Citrus Sinensis ID: 018729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGEMDAATFILNCFK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEHHHccccccccccHHHHHccccccccccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHccccHcEEEEEccccccHHHHHHHHHccccEEEEEccccccEEEEEEHHHHEEcccccccccHHccccccccccccccHHHHHHHHHccccEEEEEEccccccccEEEHHHHHHHHHHcHccccccccHcccEEcccccc
Coil and Loop (DISEMBL)
matdsdvaccGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIksgrpqdrihaakifpvVKNQHLLLCTLLIGNSLAMEALpifldklvppwAAVLISVTLILMFGEILPQAVCTrygltvgatmAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNfhgneagkggdlthDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTmghsrvpvysgnptnIIGLILVKNllsvdyrdavpLRKMIIRriprvsedmplyDILNEFQKGHSHIAVVYKdlnekkegelfkdnckkprgqpekssqkgemDAATFILNCFK
Flexible Loop (DISEMBL)
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGneagkggdlthDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIrriprvsedmpLYDILNEFQKGHSHIAVVYKDLNEKKEgelfkdnckkprgqpekssqkgemdaATFILNCFK
Low Complexity Region (SEG)
MATDSDVACCGTMFFVFVLGIIALVCFaglmagltlglmslglVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSldldatltldtlNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGEMDAATFILNCFK
Disordered region (IsUnstruct)
******VACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL*********************************FILN***
Disordered Region (DISOPRED)
*******ACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDL***************AKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGH******A****FVN**************DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGEMDAATFILNCFK
Disordered Region (DISEMBL)
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK***************DAATFILNCFK
Disordered Region (DISPRO)
*****DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGEMDAATFI*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGEMDAATFILNCFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q8RY60	527	DUF21 domain-containing p	yes	no	0.948	0.631	0.772	1e-156
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.877	0.728	0.668	1e-120
Q9LTD8	500	DUF21 domain-containing p	no	no	0.940	0.66	0.602	1e-115
Q8VZI2	424	DUF21 domain-containing p	no	no	0.877	0.726	0.652	1e-114
Q67XQ0	494	DUF21 domain-containing p	no	no	0.837	0.595	0.597	1e-98
Q4V3C7	495	DUF21 domain-containing p	no	no	0.954	0.676	0.533	2e-97
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.837	0.589	0.577	1e-95
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.851	0.423	0.389	2e-54
Q9USJ3	679	Uncharacterized protein C	yes	no	0.817	0.422	0.394	3e-54
Q3TWN3	875	Metal transporter CNNM2 O	yes	no	0.866	0.347	0.373	5e-52

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  552 bits (1422), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 271/351 (77%), Positives = 301/351 (85%), Gaps = 18/351 (5%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CCGT F ++V+ IIALV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI+A KI
Sbjct: 3   SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLT DET+II GALELTEKTAKDAMTPIS AFSL+LD  L L+TLN IM++GHSRVP
Sbjct: 183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct: 243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEG------------------ELFKDNCKKPRGQPEKSSQK 337
           AVVYKDL+E+++                   ELFKD+C+KP+ Q E S ++
Sbjct: 303 AVVYKDLDEQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKE 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/308 (66%), Positives = 251/308 (81%)

Query: 6   DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIF 65
           +  CCGT FF+ +  I+ LV FAGLM+GLTLGLMS+ LVDLEVL KSG P+DRIHAAKI 
Sbjct: 4   EYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKIL 63

Query: 66  PVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRY 125
           PVVKNQHLLLCTLLI N+ AMEALPIFLD LV  W A+LISVTLIL+FGEI+PQ+VC+R+
Sbjct: 64  PVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRH 123

Query: 126 GLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGK 185
           GL +GAT+AP VRVL+ +  P+++PISK+LD +LG G   L RRAELKT V+ HGNEAGK
Sbjct: 124 GLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGK 183

Query: 186 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV 245
           GG+LTHDETTIIAGALEL+EK AKDAMTPIS  F +D++A L  D +N I+  GHSRVPV
Sbjct: 184 GGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPV 243

Query: 246 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
           Y    TNIIGL+LVKNLL+++  + + ++ + IRRIPRV E +PLYDILNEFQKGHSH+A
Sbjct: 244 YYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMA 303

Query: 306 VVYKDLNE 313
           VV +  ++
Sbjct: 304 VVVRQCDK 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/332 (60%), Positives = 257/332 (77%), Gaps = 2/332 (0%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DV CC TMF+V++L  +ALV FAGLM+GLTLGLMSL +V+LEV+IK+G P DR +A KI
Sbjct: 4   NDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEKI 63

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
            P+VKNQHLLLCTLLIGN+LAMEALPIF+D L+P W A+LISVTLIL FGEI+PQAVC+R
Sbjct: 64  LPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCSR 123

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL++GA ++ +VR+++ +FFP+SYPISK+LDL+LGK H+ LL RAELK+ V  HGNEAG
Sbjct: 124 YGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEAG 183

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGG+LTHDETTII+GAL++++K+AKDAMTP+S+ FSLD++  L   T+  I + GHSR+P
Sbjct: 184 KGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRIP 243

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           +YS NP  IIG ILVKNL+ V   D   +R + IRR+P+V  ++PLYDILN FQ G SH+
Sbjct: 244 IYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHM 303

Query: 305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQ 336
           A V    N         +  K   G P K + 
Sbjct: 304 AAVVGTKNHTNTNTPVHE--KSINGSPNKDAN 333

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/308 (65%), Positives = 246/308 (79%)

Query: 6   DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIF 65
           +  CC   FF+ +  I+ LV FAGLM+GLTLGLMSL LVDLEVL KSG P+ R +AAKI 
Sbjct: 4   EYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKIL 63

Query: 66  PVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRY 125
           PVVKNQHLLL TLLI N+ AME LPIFLD LV  W A+LISVTLIL+FGEI+PQ++C+RY
Sbjct: 64  PVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRY 123

Query: 126 GLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGK 185
           GL +GAT+AP VRVL+ +  P+++PISK+LD +LG   A L RRAELKT V+FHGNEAGK
Sbjct: 124 GLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGK 183

Query: 186 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV 245
           GG+LTHDETTIIAGALEL+EK  KDAMTPIS  F +D++A L  D +N I+  GHSRVPV
Sbjct: 184 GGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPV 243

Query: 246 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
           Y   PTNIIGL+LVKNLL+++  + +P++ + IRRIPRV E +PLYDILNEFQKG SH+A
Sbjct: 244 YYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMA 303

Query: 306 VVYKDLNE 313
           VV +  ++
Sbjct: 304 VVVRQCDK 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  360 bits (923), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 177/296 (59%), Positives = 227/296 (76%), Gaps = 2/296 (0%)

Query: 11  GTMFFVFVLGIIA-LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVK 69
           G+  ++   GI   LV FAG+M+GLTLGLMSLGLV+LE+L +SG P ++  AA IFPVV+
Sbjct: 31  GSFEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQ 90

Query: 70  NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
            QH LL TLL+ N++AME LPI+LDKL   + A+++SVT +L FGE++PQA+CTRYGL V
Sbjct: 91  KQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAV 150

Query: 130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
           GA    +VR+L+ L +PI++PI KILDL+LG   A L RRA+LK  V+ H  EAGKGG+L
Sbjct: 151 GANFVWLVRILMTLCYPIAFPIGKILDLVLGHNDA-LFRRAQLKALVSIHSQEAGKGGEL 209

Query: 190 THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN 249
           THDETTII+GAL+LTEKTA++AMTPI   FSLD+++ L  + +  I+  GHSRVPVYSGN
Sbjct: 210 THDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN 269

Query: 250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
           P N+IGL+LVK+LL+V       +  + IRRIPRV  DMPLYDILNEFQKG SH+A
Sbjct: 270 PKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMA 325

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  356 bits (913), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/345 (53%), Positives = 247/345 (71%), Gaps = 10/345 (2%)

Query: 2   ATDSDVACCGTMFFVFVLGIIA-LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIH 60
           A  S+    G++ ++   GI   LV FAG+M+GLTLGLMSLGLV+LE+L +SG P+++  
Sbjct: 21  ALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQ 80

Query: 61  AAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQA 120
           +A IFPVV+ QH LL TLL+ N+LAME LPI+LDK+   + A+++SVT +L  GE++PQA
Sbjct: 81  SAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQA 140

Query: 121 VCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHG 180
           +CTRYGL VGA +  +VR+L+ L +PIS+PI+K+LD +LG     L RRA+LK  V+ HG
Sbjct: 141 ICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHNDP-LFRRAQLKALVSIHG 199

Query: 181 NEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH 240
             AGKGG+LTHDETTII+GAL+LTEKTA++AMTPI   FSLD+++ L  + ++ I   GH
Sbjct: 200 EAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGH 259

Query: 241 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKG 300
           SRVPVYS NP N+IGL+LVK+LL+V       +  + IRRIPRV  +MPLYDILNEFQKG
Sbjct: 260 SRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKG 319

Query: 301 HSHIAVVYKDLNEKKEGE---LFKDNCKKPRGQPEKSSQKGEMDA 342
            SH+A V K +  K +G    L ++N     G+   SS   E+ A
Sbjct: 320 SSHMAAVVK-VKGKSKGHPSTLHEENS----GESNVSSNNSELTA 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  350 bits (898), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 171/296 (57%), Positives = 225/296 (76%), Gaps = 2/296 (0%)

Query: 11  GTMFFVFVLGIIA-LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVK 69
           G+ ++  V+G+   LV FAG+M+GLTLGLMSLGLV+LE+L +SG   ++  AA I PVVK
Sbjct: 29  GSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVK 88

Query: 70  NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
            QH LL TLL+ N+ AMEALPI LDK+  P+ AVL+SVT +L FGEI+PQA+C+RYGL V
Sbjct: 89  KQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAV 148

Query: 130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
           GA    +VR+L+ + +PI+YPI K+LD ++G     L RRA+LK  V+ H  EAGKGG+L
Sbjct: 149 GANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDT-LFRRAQLKALVSIHSQEAGKGGEL 207

Query: 190 THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN 249
           TH+ET II+GAL+L++KTA++AMTPI   FSLD++  L  +T+  I++ GHSR+PVY GN
Sbjct: 208 THEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGN 267

Query: 250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
           P NIIGL+LVK+LL+V      P+  + IR+IPRV  DMPLYDILNEFQKG SH+A
Sbjct: 268 PKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMA 323

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 181/308 (58%), Gaps = 9/308 (2%)

Query: 6   DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIF 65
           D A   T + + ++    LV   G+ AGLTLGLM    V L+V+  SG   ++  A ++ 
Sbjct: 57  DEASVTTYYIISII----LVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVL 112

Query: 66  PVV-KNQHLLLCTLLIGNSLAMEALPIFLDK-LVPPWAAVLISVTLILMFGEILPQAVCT 123
            ++ + +H +L TLL+ N +  E LPI LD+ L   W AV+ S  LI++FGEI+PQ+VC 
Sbjct: 113 DLISRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCV 172

Query: 124 RYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEA 183
           +YGL VGA   P V VL+ L +P++YPI+ +LD MLG+ H  + +++ LKT V  H    
Sbjct: 173 KYGLQVGAFFCPFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMG 232

Query: 184 GKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV 243
            +   LT DE TII+  L+L  K  ++ MTPI   F++  D  L   T+  I   G SR+
Sbjct: 233 VE--RLTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRI 290

Query: 244 PVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHS 302
           P++  N P N IG++LV+ L+S D  D +P+    +  +P  S +    +ILN FQ+G +
Sbjct: 291 PIFLPNEPNNFIGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKA 350

Query: 303 HIAVVYKD 310
           H+ VV K+
Sbjct: 351 HMCVVSKE 358

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/294 (39%), Positives = 177/294 (60%), Gaps = 7/294 (2%)

Query: 24  LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKN-QHLLLCTLLIGN 82
           L+   G+ AGLT+GLM    + L+VL +SG   +R+HA K+  +++  +H +L TLL+GN
Sbjct: 72  LILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKHWVLVTLLLGN 131

Query: 83  SLAMEALPIFLDKLVPP-WAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLL 141
            +  E LPI  D ++   W AVLIS  +I++FGE++PQA C RYGL++GA + PIV  ++
Sbjct: 132 VIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGAKLEPIVLFMM 191

Query: 142 CLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD-LTHDETTIIAGA 200
            L +PI+YP + ILD  LG+  + + +++ LKT V  H +    G D L  DE TII   
Sbjct: 192 YLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRD---LGIDKLNQDEVTIITAV 248

Query: 201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYS-GNPTNIIGLILV 259
           L+L EK A+  MTPI   F+L +D  L  D +  I+  G+SR+PV+  G P + IG++L 
Sbjct: 249 LDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFPHDFIGMLLT 308

Query: 260 KNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE 313
           K L+  D  D  P+ K  +  +P+   +    D+LN  Q+G SH+ ++     E
Sbjct: 309 KTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILISNSPGE 362

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q3TWN3|CNNM2_MOUSE Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=3

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/313 (37%), Positives = 185/313 (59%), Gaps = 9/313 (2%)

Query: 14  FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHL 73
           F++ V+ I  L+C +G+ +GL LGLM+L  ++L ++   G  +++ +A +I PV +  + 
Sbjct: 255 FWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGNY 314

Query: 74  LLCTLLIGNSLAMEALPIFLDKLVPP-WAAVLISVTLILMFGEILPQAVCTRYGLTVGAT 132
           LLC+LL+GN L    L I LD +      AV++S   I++FGEI+PQA+C+R+GL VGA 
Sbjct: 315 LLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGAN 374

Query: 133 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 192
              + +  + + FP SYP+SK+LD +LG+    +  R +L   +           DL  +
Sbjct: 375 TIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKE 430

Query: 193 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 252
           E  II GALEL  KT +D MTP+   F +  +A L  +T++ IM  G++R+PV+ G  +N
Sbjct: 431 ELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSN 490

Query: 253 IIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309
           I+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V +
Sbjct: 491 IVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR 550

Query: 310 DLNEKKEGELFKD 322
            +N + EG+ F +
Sbjct: 551 -VNNEGEGDPFYE 562

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
302142492	524	unnamed protein product [Vitis vinifera]	0.894	0.599	0.885	1e-161
225458287	526	PREDICTED: DUF21 domain-containing prote	0.940	0.627	0.844	1e-161
224129624	513	predicted protein [Populus trichocarpa]	0.965	0.660	0.845	1e-160
255538638	428	conserved hypothetical protein [Ricinus	0.886	0.726	0.871	1e-157
147771522	1762	hypothetical protein VITISV_038533 [Viti	0.894	0.178	0.812	1e-156
356510213	487	PREDICTED: DUF21 domain-containing prote	0.951	0.685	0.804	1e-155
297846940	525	hypothetical protein ARALYDRAFT_473883 [	0.928	0.620	0.784	1e-155
22330087	527	uncharacterized protein [Arabidopsis tha	0.948	0.631	0.772	1e-154
356518903	487	PREDICTED: DUF21 domain-containing prote	0.891	0.642	0.849	1e-154
312283071	517	unnamed protein product [Thellungiella h	0.945	0.642	0.768	1e-153

>gi|302142492|emb|CBI19695.3| unnamed protein product [Vitis vinifera]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/314 (88%), Positives = 299/314 (95%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DVACCGT FF++V+ I+ LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   ADVACCGTKFFIYVVIIVGLVGFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAME+LPIFLDKLVPPWAA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPPWAAILISVTLILMFGEILPQALCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YG+TVGATMAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAG
Sbjct: 123 YGMTVGATMAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL+TLNAIMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLETLNAIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G PTNIIGLILVKNLL VD  DAVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGKPTNIIGLILVKNLLMVDPDDAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEGE 318
           AVV+KDLNE KE +
Sbjct: 303 AVVFKDLNETKEAQ 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458287|ref|XP_002282587.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Vitis vinifera]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/335 (84%), Positives = 307/335 (91%), Gaps = 5/335 (1%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DVACCGT FF++V+ I+ LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   ADVACCGTKFFIYVVIIVGLVGFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAME+LPIFLDKLVPPWAA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPPWAAILISVTLILMFGEILPQALCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YG+TVGATMAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAG
Sbjct: 123 YGMTVGATMAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL+TLNAIMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLETLNAIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G PTNIIGLILVKNLL VD  DAVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGKPTNIIGLILVKNLLMVDPDDAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGE 339
           AVV+KDLNE KE +      K   G  + S ++GE
Sbjct: 303 AVVFKDLNETKEAQ-----NKTKDGALQVSMKRGE 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129624|ref|XP_002320632.1| predicted protein [Populus trichocarpa] gi|222861405|gb|EEE98947.1| predicted protein [Populus trichocarpa]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/342 (84%), Positives = 312/342 (91%), Gaps = 3/342 (0%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CC + F ++++ II LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   SDIGCCSSKFMLYMVIIIGLVTFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVL SVTLILMFGEILPQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLASVTLILMFGEILPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGLTVGAT+AP+VRVLL LFFPISYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLTVGATLAPLVRVLLLLFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           +GGDLTHDETTII GALELTEKTAKDAMTPISKAFSLDLDATL L+TLNAIMTMGHSRVP
Sbjct: 183 RGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNAIMTMGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G PTNIIGL LVKNLL+VD  DAVPL+KMIIR+IPRVSED+PLYDILNEFQKGHSHI
Sbjct: 243 VYAGKPTNIIGLFLVKNLLAVDPEDAVPLKKMIIRKIPRVSEDLPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKE--GELFKDNCKKPRGQPEKSSQKGEMDAAT 344
           AVVYKDLN  KE     FKD+C+K RG+ E S +KG+ +  +
Sbjct: 303 AVVYKDLNANKETPKNEFKDSCRK-RGKTETSHEKGDSEVGS 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538638|ref|XP_002510384.1| conserved hypothetical protein [Ricinus communis] gi|223551085|gb|EEF52571.1| conserved hypothetical protein [Ricinus communis]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/311 (87%), Positives = 291/311 (93%)

Query: 6   DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIF 65
           DV CCGT F ++V+ I+ LV FAGLMAGLTLGLMSLGLVDLEVL KSGRPQDRI+A+KI 
Sbjct: 4   DVGCCGTEFSLYVVVIVGLVAFAGLMAGLTLGLMSLGLVDLEVLKKSGRPQDRIYASKIL 63

Query: 66  PVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRY 125
           PVVKNQHLLLCTLL+GNSLAMEALPIFLDK+VPPWAA+LISVTLILMFGEILPQAVCTRY
Sbjct: 64  PVVKNQHLLLCTLLMGNSLAMEALPIFLDKIVPPWAAILISVTLILMFGEILPQAVCTRY 123

Query: 126 GLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGK 185
           GL VGATMAP VR+L+ LFFP+SYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEA K
Sbjct: 124 GLKVGATMAPFVRLLVMLFFPVSYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAQK 183

Query: 186 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV 245
           GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATL LDT+NAIMTMGHSRVPV
Sbjct: 184 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLNLDTMNAIMTMGHSRVPV 243

Query: 246 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
           Y+GNP NIIGLILVKNLL+V+  DAVPLRKMIIR+IPRVSEDMPLYDILNEFQKGHSH+A
Sbjct: 244 YAGNPNNIIGLILVKNLLAVNLEDAVPLRKMIIRKIPRVSEDMPLYDILNEFQKGHSHLA 303

Query: 306 VVYKDLNEKKE 316
            VYKDL+ K E
Sbjct: 304 AVYKDLDPKIE 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771522|emb|CAN75692.1| hypothetical protein VITISV_038533 [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/342 (81%), Positives = 299/342 (87%), Gaps = 28/342 (8%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DVACCGT FF++V+ I+ LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   ADVACCGTKFFIYVVIIVGLVGFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAME+LPIFLDKLVPPWAA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPPWAAILISVTLILMFGEILPQALCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YG+TVGATMAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAG
Sbjct: 123 YGMTVGATMAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTL--------------- 229
           KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL               
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLWVYKFLINLSISIMF 242

Query: 230 -------------DTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM 276
                        +TLNAIMT+GHSRVPVY+G PTNIIGLILVKNLL VD  DAVPLRKM
Sbjct: 243 PCHSYVFILFSLRETLNAIMTIGHSRVPVYAGKPTNIIGLILVKNLLMVDPDDAVPLRKM 302

Query: 277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGE 318
           +IR+IPRVSE+MPLYDILNEFQKGHSHIAVV+KDLNE KE +
Sbjct: 303 VIRKIPRVSENMPLYDILNEFQKGHSHIAVVFKDLNETKEAQ 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510213|ref|XP_003523834.1| PREDICTED: DUF21 domain-containing protein At1g47330 [Glycine max]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/343 (80%), Positives = 307/343 (89%), Gaps = 9/343 (2%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +++ CCGT F ++VL II LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHA+KI
Sbjct: 3   AEIPCCGTKFSLYVLVIIGLVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHASKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           +PVVKNQHLLLCTLLIGNSLAMEALPIFLD LV P AA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  YPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVHPAAAILISVTLILMFGEILPQAICTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGLTVGAT+AP+VRVLL +FFP+SYPISK+LD MLGKGHA LL+RAELKTFVNFHGNEAG
Sbjct: 123 YGLTVGATLAPLVRVLLIVFFPLSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTII GAL+LTEKTAKDAMTPISKAFSLDLDATL L+TLN+IMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIITGALDLTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G  TNIIGL+LVKNL  VD + AVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGEKTNIIGLVLVKNLFMVDSKAAVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEK-------KEGELFKDNCKKPRGQPEKSS-QKGE 339
           AVVY+DLN+K       K+GEL  D   K + + EK+S  KGE
Sbjct: 303 AVVYRDLNDKNEAPKKVKDGELL-DLKDKRKNKGEKTSLDKGE 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846940|ref|XP_002891351.1| hypothetical protein ARALYDRAFT_473883 [Arabidopsis lyrata subsp. lyrata] gi|297337193|gb|EFH67610.1| hypothetical protein ARALYDRAFT_473883 [Arabidopsis lyrata subsp. lyrata]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/344 (78%), Positives = 298/344 (86%), Gaps = 18/344 (5%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CCGT F ++V+ IIALV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI+A KI
Sbjct: 3   SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPFVRVLLILFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLT DET+II GALELTEKTAKDAMTPIS AFSL+LD TL L+TLN IM++GHSRVP
Sbjct: 183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTTLNLETLNTIMSVGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct: 243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEG------------------ELFKDNCKKPRGQ 330
           AVVYKDL+E+++                   ELFKD+C+KP+ Q
Sbjct: 303 AVVYKDLDEQEQSPETSESGIERRKNKNTKDELFKDSCRKPKAQ 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330087|ref|NP_175166.2| uncharacterized protein [Arabidopsis thaliana] gi|75247684|sp|Q8RY60.1|Y1733_ARATH RecName: Full=DUF21 domain-containing protein At1g47330; AltName: Full=CBS domain-containing protein CBSDUF7 gi|19715640|gb|AAL91640.1| At1g47330/T3F24_2 [Arabidopsis thaliana] gi|22137130|gb|AAM91410.1| At1g47330/T3F24_2 [Arabidopsis thaliana] gi|332194036|gb|AEE32157.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/351 (77%), Positives = 301/351 (85%), Gaps = 18/351 (5%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CCGT F ++V+ IIALV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI+A KI
Sbjct: 3   SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLT DET+II GALELTEKTAKDAMTPIS AFSL+LD  L L+TLN IM++GHSRVP
Sbjct: 183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct: 243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEG------------------ELFKDNCKKPRGQPEKSSQK 337
           AVVYKDL+E+++                   ELFKD+C+KP+ Q E S ++
Sbjct: 303 AVVYKDLDEQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKE 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518903|ref|XP_003528116.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Glycine max]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/313 (84%), Positives = 291/313 (92%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +++ CCGT F ++VL II LVCFAGLMAGLTLGLMSLG+VDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   AEIPCCGTKFSLYVLVIIGLVCFAGLMAGLTLGLMSLGIVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           +PVVKNQHLLLCTLLIGNSLAMEALPIFLD LV P AA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  YPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVHPAAAILISVTLILMFGEILPQAICTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGLTVGAT+AP+VRVLL +FFP SYPISK+LD MLGKGHA LL+RAELKTFVNFHGNEAG
Sbjct: 123 YGLTVGATLAPLVRVLLIVFFPFSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTII GALELTEKTAKDAMTPISKAFSLDLDATL L+TLN+IMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G  TNIIGL+LVKNL  VD + AVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGEKTNIIGLVLVKNLFMVDSKAAVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEG 317
           AVVY+DLN+K E 
Sbjct: 303 AVVYRDLNDKNEA 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283071|dbj|BAJ34401.1| unnamed protein product [Thellungiella halophila]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/350 (76%), Positives = 301/350 (86%), Gaps = 18/350 (5%)

Query: 6   DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIF 65
           D+ CCG  F ++V+ IIALV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI+A KIF
Sbjct: 5   DIPCCGARFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKIF 64

Query: 66  PVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRY 125
           PVVKNQHLLLCTLLIGNS+AMEALPIFLD++VPPWAA+++SVTLIL+FGEI+PQAVCTRY
Sbjct: 65  PVVKNQHLLLCTLLIGNSMAMEALPIFLDRIVPPWAAIVLSVTLILIFGEIMPQAVCTRY 124

Query: 126 GLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGK 185
           GL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAGK
Sbjct: 125 GLKVGAIMAPFVRVLLILFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAGK 184

Query: 186 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV 245
           GGDLT+DET+II GALELTEKTAKDAMTPIS AFSL+LD+TL L+TL+ IM++GHSRVPV
Sbjct: 185 GGDLTNDETSIITGALELTEKTAKDAMTPISNAFSLELDSTLNLETLSTIMSVGHSRVPV 244

Query: 246 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
           Y  NPT+IIGLILVKNLL+ D R  V LRKMI+R+IPRVSE MPLYDILNEFQKGHSHIA
Sbjct: 245 YFRNPTHIIGLILVKNLLAFDARKEVSLRKMIMRKIPRVSETMPLYDILNEFQKGHSHIA 304

Query: 306 VVYKDLNEKK------------------EGELFKDNCKKPRGQPEKSSQK 337
           VVYKDL+E+K                    ELFKD+CKKP+ Q E S ++
Sbjct: 305 VVYKDLDEQKGSPETSQNGSERRKNKKTRDELFKDSCKKPKSQLEVSEKE 354

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.908	0.605	0.746	2.4e-127
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.868	0.721	0.619	3.2e-97
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.937	0.658	0.552	1.6e-93
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.877	0.726	0.594	9e-93
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.866	0.615	0.532	3.3e-79
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.954	0.676	0.484	2.7e-77
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.900	0.633	0.498	1.1e-76
ASPGD|ASPL0000052186	484	AN0789 [Emericella nidulans (t	0.814	0.590	0.382	5.1e-51
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.752	0.368	0.395	4.9e-48
CGD|CAL0000380	780	orf19.6979 [Candida albicans (	0.763	0.343	0.377	3.9e-46

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
 Identities = 238/319 (74%), Positives = 262/319 (82%)

Query:     5 SDVACCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKI 64
             SD+ CCGT F ++V+ IIALV F                VDLEVLIKSGRPQDRI+A KI
Sbjct:     3 SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query:    65 FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
             FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct:    63 FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query:   125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
             YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct:   123 YGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query:   185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVP 244
             KGGDLT DET+II GALELTEKTAKDAMTPIS AFS            N IM++GHSRVP
Sbjct:   183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVP 242

Query:   245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
             VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct:   243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query:   305 AVVYKDLNEKKEGELFKDN 323
             AVVYKDL+E+++     +N
Sbjct:   303 AVVYKDLDEQEQSPETSEN 321

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 189/305 (61%), Positives = 227/305 (74%)

Query:     9 CCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVV 68
             CCGT FF+ +  I+ LV F                VDLEVL KSG P+DRIHAAKI PVV
Sbjct:     7 CCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVV 66

Query:    69 KNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLT 128
             KNQHLLLCTLLI N+ AMEALPIFLD LV  W A+LISVTLIL+FGEI+PQ+VC+R+GL 
Sbjct:    67 KNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLA 126

Query:   129 VGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD 188
             +GAT+AP VRVL+ +  P+++PISK+LD +LG G   L RRAELKT V+ HGNEAGKGG+
Sbjct:   127 IGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGE 186

Query:   189 LTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSG 248
             LTHDETTIIAGALEL+EK AKDAMTPIS  F             N I+  GHSRVPVY  
Sbjct:   187 LTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYE 246

Query:   249 NPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308
               TNIIGL+LVKNLL+++  + + ++ + IRRIPRV E +PLYDILNEFQKGHSH+AVV 
Sbjct:   247 QRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVV 306

Query:   309 KDLNE 313
             +  ++
Sbjct:   307 RQCDK 311

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 183/331 (55%), Positives = 235/331 (70%)

Query:     5 SDVACCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKI 64
             +DV CC TMF+V++L  +ALV F                V+LEV+IK+G P DR +A KI
Sbjct:     4 NDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEKI 63

Query:    65 FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
              P+VKNQHLLLCTLLIGN+LAMEALPIF+D L+P W A+LISVTLIL FGEI+PQAVC+R
Sbjct:    64 LPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCSR 123

Query:   125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
             YGL++GA ++ +VR+++ +FFP+SYPISK+LDL+LGK H+ LL RAELK+ V  HGNEAG
Sbjct:   124 YGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEAG 183

Query:   185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVP 244
             KGG+LTHDETTII+GAL++++K+AKDAMTP+S+ FS              I + GHSR+P
Sbjct:   184 KGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRIP 243

Query:   245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
             +YS NP  IIG ILVKNL+ V   D   +R + IRR+P+V  ++PLYDILN FQ G SH+
Sbjct:   244 IYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHM 303

Query:   305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSS 335
             A V    N         +  K   G P K +
Sbjct:   304 AAVVGTKNHTNTNTPVHE--KSINGSPNKDA 332

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 183/308 (59%), Positives = 223/308 (72%)

Query:     6 DVACCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIF 65
             +  CC   FF+ +  I+ LV F                VDLEVL KSG P+ R +AAKI 
Sbjct:     4 EYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKIL 63

Query:    66 PVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRY 125
             PVVKNQHLLL TLLI N+ AME LPIFLD LV  W A+LISVTLIL+FGEI+PQ++C+RY
Sbjct:    64 PVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRY 123

Query:   126 GLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGK 185
             GL +GAT+AP VRVL+ +  P+++PISK+LD +LG   A L RRAELKT V+FHGNEAGK
Sbjct:   124 GLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGK 183

Query:   186 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPV 245
             GG+LTHDETTIIAGALEL+EK  KDAMTPIS  F             N I+  GHSRVPV
Sbjct:   184 GGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPV 243

Query:   246 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
             Y   PTNIIGL+LVKNLL+++  + +P++ + IRRIPRV E +PLYDILNEFQKG SH+A
Sbjct:   244 YYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMA 303

Query:   306 VVYKDLNE 313
             VV +  ++
Sbjct:   304 VVVRQCDK 311

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 163/306 (53%), Positives = 207/306 (67%)

Query:    11 GTMFFVFVLGIIA-LVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVVK 69
             G+  ++   GI   LV F                V+LE+L +SG P ++  AA IFPVV+
Sbjct:    31 GSFEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQ 90

Query:    70 NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
              QH LL TLL+ N++AME LPI+LDKL   + A+++SVT +L FGE++PQA+CTRYGL V
Sbjct:    91 KQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAV 150

Query:   130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
             GA    +VR+L+ L +PI++PI KILDL+LG   A L RRA+LK  V+ H  EAGKGG+L
Sbjct:   151 GANFVWLVRILMTLCYPIAFPIGKILDLVLGHNDA-LFRRAQLKALVSIHSQEAGKGGEL 209

Query:   190 THDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN 249
             THDETTII+GAL+LTEKTA++AMTPI   FS              I+  GHSRVPVYSGN
Sbjct:   210 THDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN 269

Query:   250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309
             P N+IGL+LVK+LL+V       +  + IRRIPRV  DMPLYDILNEFQKG SH+A V K
Sbjct:   270 PKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVK 329

Query:   310 DLNEKK 315
                + K
Sbjct:   330 VKGKSK 335

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 167/345 (48%), Positives = 223/345 (64%)

Query:     2 ATDSDVACCGTMFFVFVLGIIA-LVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIH 60
             A  S+    G++ ++   GI   LV F                V+LE+L +SG P+++  
Sbjct:    21 ALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQ 80

Query:    61 AAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQA 120
             +A IFPVV+ QH LL TLL+ N+LAME LPI+LDK+   + A+++SVT +L  GE++PQA
Sbjct:    81 SAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQA 140

Query:   121 VCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHG 180
             +CTRYGL VGA +  +VR+L+ L +PIS+PI+K+LD +LG     L RRA+LK  V+ HG
Sbjct:   141 ICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHNDP-LFRRAQLKALVSIHG 199

Query:   181 NEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGH 240
               AGKGG+LTHDETTII+GAL+LTEKTA++AMTPI   FS            + I   GH
Sbjct:   200 EAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGH 259

Query:   241 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKG 300
             SRVPVYS NP N+IGL+LVK+LL+V       +  + IRRIPRV  +MPLYDILNEFQKG
Sbjct:   260 SRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKG 319

Query:   301 HSHIAVVYKDLNEKKEGE---LFKDNCKKPRGQPEKSSQKGEMDA 342
              SH+A V K +  K +G    L ++N     G+   SS   E+ A
Sbjct:   320 SSHMAAVVK-VKGKSKGHPSTLHEENS----GESNVSSNNSELTA 359

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 160/321 (49%), Positives = 213/321 (66%)

Query:    11 GTMFFVFVLGIIA-LVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVVK 69
             G+ ++  V+G+   LV F                V+LE+L +SG   ++  AA I PVVK
Sbjct:    29 GSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVK 88

Query:    70 NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
              QH LL TLL+ N+ AMEALPI LDK+  P+ AVL+SVT +L FGEI+PQA+C+RYGL V
Sbjct:    89 KQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAV 148

Query:   130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
             GA    +VR+L+ + +PI+YPI K+LD ++G     L RRA+LK  V+ H  EAGKGG+L
Sbjct:   149 GANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDT-LFRRAQLKALVSIHSQEAGKGGEL 207

Query:   190 THDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN 249
             TH+ET II+GAL+L++KTA++AMTPI   FS              I++ GHSR+PVY GN
Sbjct:   208 THEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGN 267

Query:   250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309
             P NIIGL+LVK+LL+V      P+  + IR+IPRV  DMPLYDILNEFQKG SH+A V K
Sbjct:   268 PKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMAAVVK 327

Query:   310 --DLNEKKEGELFKDNCKKPR 328
               D ++K   +L   N + P+
Sbjct:   328 VKDKDKKNNMQLLS-NGETPK 347

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000052186 AN0789 [Emericella nidulans (taxid:162425)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 111/290 (38%), Positives = 171/290 (58%)

Query:    22 IALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVV-KNQHLLLCTLLI 80
             +ALV                  V L+VL  SG   ++ HA  +  ++ K +H +L TLL+
Sbjct:    51 VALVLIGGVFAGLTIALMGQDAVHLQVLATSGDGPEQKHARTVLGLISKGKHWVLVTLLL 110

Query:    81 GNSLAMEALPIFLDK-LVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRV 139
             GN +  E+LPI LDK L   W AVL S  LI++FGEI+PQ+VC RYGL +GA ++P V V
Sbjct:   111 GNVVVNESLPIVLDKTLGGGWPAVLGSTVLIVIFGEIIPQSVCVRYGLPIGAYLSPAVLV 170

Query:   140 LLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD-LTHDETTIIA 198
             L+  F P+++P +++LD +LG+ H  + +++ LKT V  H +   +  + LT DE TII 
Sbjct:   171 LMYAFAPVAWPTARLLDYLLGENHGTVYKKSGLKTLVTLHKSLGSQPAERLTEDEVTIIT 230

Query:   199 GALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYS-GNPTNIIGLI 257
               L+L  K  ++ MTP+   F+              I++ G SR+PV++ GNP + +G++
Sbjct:   231 AVLDLKAKPVREIMTPMESVFTMPSNAVLDEKTMELILSAGFSRIPVHAPGNPGDFLGML 290

Query:   258 LVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
             LVK L++ D  DA  +++ ++  +P  S D    DILN FQ+GHSH+A+V
Sbjct:   291 LVKTLITYDPDDAKRVKEFVLATLPETSPDTSCLDILNYFQEGHSHMALV 340

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 502 (181.8 bits), Expect = 4.9e-48, P = 4.9e-48
 Identities = 106/268 (39%), Positives = 160/268 (59%)

Query:    44 VDLEVLIKSG-RPQDRIHAAKIFPVVKN-QHLLLCTLLIGNSLAMEALPIFLDK-LVPPW 100
             V L+V+  SG  P +R +AA +  ++K  +H +L TLL+ N +  E LPI LD+ L   W
Sbjct:    91 VYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSLGGGW 150

Query:   101 AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLG 160
              AVL S  LI++FGEI+PQ++C RYGL +GA MAP V  L+ L  P+++P++K+LD +LG
Sbjct:   151 PAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLDRLLG 210

Query:   161 KGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFS 220
             + H  + ++A LKT V  H      G  L  DE TII+  L+L EK+    MTP+   F+
Sbjct:   211 EDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPMEDVFT 270

Query:   221 XXXXXXXXXXXXNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYRDAVPLRKMIIR 279
                         + I++ G+SR+P++S  NP N IG++LVK L++ D  D  P+    + 
Sbjct:   271 MSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSHFALA 330

Query:   280 RIPRVSEDMPLYDILNEFQKGHSHIAVV 307
              +P    +    DI+N FQ+G SH+ +V
Sbjct:   331 TLPETRPETSCLDIVNFFQEGKSHMVLV 358

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0000380 orf19.6979 [Candida albicans (taxid:5476)]

 Score = 489 (177.2 bits), Expect = 3.9e-46, P = 3.9e-46
 Identities = 103/273 (37%), Positives = 158/273 (57%)

Query:    44 VDLEVLIKSGRPQDRIHAAKIFPVV-KNQHLLLCTLLIGNSLAMEALPIFLDK-LVPPWA 101
             V L+V+  SG   +R HA K+  ++ + +H +L TLL+ N +  E LPI LD+ L   W 
Sbjct:   107 VYLKVIAHSGDSTERKHAKKVLQLIGRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWP 166

Query:   102 AVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGK 161
             AV+ S   I++FGEI+PQ++C RYGL VG+  AP V VL+ + +P++YP + +LD +LG+
Sbjct:   167 AVVTSTVSIVIFGEIIPQSICVRYGLQVGSLFAPFVLVLMYIMYPVAYPCAMLLDHILGE 226

Query:   162 GHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSX 221
              H  + +++ LKT V  H     +   L  DE TII+  L+L EK     MTP+ + ++ 
Sbjct:   227 DHGTVYKKSGLKTLVTLHKTMGVER--LNQDEVTIISAVLDLKEKPVSSIMTPMDRVYTM 284

Query:   222 XXXXXXXXXXXNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR 280
                          I   G SR+P++  N PTN IG++LV+ L+S D  DA+P+    +  
Sbjct:   285 SADALLDEKTVEEIFNAGFSRIPIHLPNEPTNFIGMLLVRVLISYDPEDALPVASFPLAT 344

Query:   281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE 313
             +P    D    +ILN FQ+G SH+ VV ++  E
Sbjct:   345 LPETGLDTSCLNILNYFQEGKSHMIVVSENPGE 377

GO:0003674 "molecular_function" evidence=ND

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RY60	Y1733_ARATH	No assigned EC number	0.7720	0.9487	0.6318	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	1e-49
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	3e-31
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	2e-26
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	2e-25
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	5e-20
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	5e-13
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	6e-09

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  171 bits (435), Expect = 1e-49
 Identities = 78/312 (25%), Positives = 147/312 (47%), Gaps = 21/312 (6%)

Query: 12  TMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQ 71
               + +L I+ L+  +   +     L+SL    LE L + G  +    A     +++  
Sbjct: 1   MSLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERL 56

Query: 72  HLLLCTLLIGNSLA------------MEALPIFLDKLVPPWAAVLISVT-LILMFGEILP 118
           +  L T+ +G +L                L   L+ L    A     +T L ++FGE++P
Sbjct: 57  NRYLSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVP 116

Query: 119 QAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNF 178
           +++  R    V   +AP +R    L +P+ + +++I + +L       +    L +    
Sbjct: 117 KSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEE 176

Query: 179 HG--NEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM 236
               +E+ + G L  +E  +I   L+L ++T ++ MTP +   +LDL  T+  + +  I+
Sbjct: 177 LELVSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL 235

Query: 237 TMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-VPLRKMIIRRIPRVSEDMPLYDILN 295
             GHSR+PVY G+  NIIG++ VK+LL            ++++R    V E + L D+L 
Sbjct: 236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLE 295

Query: 296 EFQKGHSHIAVV 307
           EF++  +H+A+V
Sbjct: 296 EFREERTHMAIV 307

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  116 bits (292), Expect = 3e-31
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 20/188 (10%)

Query: 18  VLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCT 77
           +L I+ L+  +   +     L+SL    LE L + G       A ++  ++ N   LL T
Sbjct: 3   LLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEGNKG----ARRLLKLLANPDRLLAT 58

Query: 78  LLIGNSLAMEALPIFLDKL--------VPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
           LL+GN+LA   L               +    A L+S  LIL+FGEILP+ +  R    +
Sbjct: 59  LLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPERI 118

Query: 130 GATMAPIVRVLLCLFFPISYPISKILDLMLG----KGHAVLLRRAELKTFVNFHGNEAGK 185
              +AP +RVL+ L +P+ + +SK+ +L+L     K     +   EL+  V    +E  +
Sbjct: 119 ALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALV----DEGEE 174

Query: 186 GGDLTHDE 193
            G +  +E
Sbjct: 175 EGVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score =  108 bits (271), Expect = 2e-26
 Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 28/313 (8%)

Query: 13  MFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQH 72
             ++ ++ II L+  +   +G    L +L    L  L K G   +R  A ++  +++   
Sbjct: 1   PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQG---NR-GAKRVEKLLEKPD 56

Query: 73  LLLCTLLIGNSLAMEALP----IFLDKLVPPWA---AVLISVTLILMFGEILPQAVCTRY 125
            L+ T+LIGN+L          I   +L        A  +   +IL+F E+LP+ +   Y
Sbjct: 57  RLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALY 116

Query: 126 GLTVGATMAPIVRVLLCLFFPISYPISKILDL---MLGKGHAV----LLRRAELKTFVNF 178
              V    + I+ +L+ LF P+ + ++ I      +LG         L  + EL+T VN 
Sbjct: 117 PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNE 176

Query: 179 HGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 238
            G+E    G +   +  ++ G L+L   T  D M P ++   +D+D     + +  ++  
Sbjct: 177 SGSE----GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS 231

Query: 239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR----VSEDMPLYDIL 294
            H+R+P+Y  +  NIIG++ V++LL +   +     K  I R       V E  PL D L
Sbjct: 232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLN-EKNEFTKEDILRAADEPYFVPEGTPLSDQL 290

Query: 295 NEFQKGHSHIAVV 307
             FQ+   HIA+V
Sbjct: 291 VAFQRNKKHIALV 303

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score =  105 bits (264), Expect = 2e-25
 Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 30/303 (9%)

Query: 21  IIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLI 80
           I+ L+  + L++G  +   SL   DL    +    +++I    +  ++     LL T+LI
Sbjct: 2   ILLLLL-SALVSGSEVAFFSLSPTDLNDEEEDNSKKEQI----VINLLDRPKKLLATILI 56

Query: 81  GNSLAMEALPIFLDKLV--------PPWAAVLISVT----LILMFGEILPQAVCTRYGLT 128
            N+    A+ +    L               LI V     LIL+FGEILP+    R  L 
Sbjct: 57  ANNFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLK 116

Query: 129 VGATMAPIVRVLLCLFFPISYP---ISKILDLMLGK-GHAVLLRRAELKTFVNFHGNEAG 184
               MA  + +L  +F PIS P   I+  +    GK    + + +            E  
Sbjct: 117 FAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLS-------QALELT 169

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
              D T +E  I+ G +       K  M P    F+LD++ T   + +  I+  G+SR+P
Sbjct: 170 DEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIE-TSFSEIIPKIIENGYSRIP 228

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY     NI G++ +K+LL    +     + + +R    V E+  L D+L +FQ+  +H+
Sbjct: 229 VYKETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHL 287

Query: 305 AVV 307
           A+V
Sbjct: 288 AIV 290

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 83.7 bits (208), Expect = 5e-20
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-AVPLRKMI 277
            +LD D TL  + L  I   GHSR PVY G+  NIIG++ VK+LL            + +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308
           +R    V E  PL D+L E +K  SH+A+V 
Sbjct: 63  LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 68.2 bits (167), Expect = 5e-13
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP 250
            D   ++ G +++ +   +D M P S+  +L  + TL  + L+ I+   HSR PV S + 
Sbjct: 52  ADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDK 110

Query: 251 TNIIGLILVKNLLSVDYRDAVPLR-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
            ++ G++L K+LL     DA P   K ++R    V E   +  +L EF+   +H+A+V
Sbjct: 111 DHVEGILLAKDLLPFMRSDAEPFDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIV 168

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 56.0 bits (135), Expect = 6e-09
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 192 DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT 251
           D   ++ G +++ ++  +D M P S+  +L  + TL  + L+ I+   HSR PV S +  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 252 NIIGLILVKNLLSVDYRDAVPLR-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
           +I G+++ K+LL     DA       ++R+   V E   +  +L EF+    H+A+V
Sbjct: 112 HIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIV 168

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	100.0
KOG2118	498	consensus Predicted membrane protein, contains two	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.97
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.97
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.73
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.72
COG4109	432	Predicted transcriptional regulator containing CBS	99.66
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.62
COG2524	294	Predicted transcriptional regulator, contains C-te	99.59
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.57
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.49
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.48
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.47
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.47
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.47
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.46
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.45
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.44
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.44
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.44
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.43
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.42
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.42
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.42
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.42
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.42
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.41
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.41
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.4
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.4
COG3620	187	Predicted transcriptional regulator with C-termina	99.4
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.4
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.39
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.39
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.39
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.39
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.38
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.38
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.38
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.38
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.37
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.37
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.36
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.36
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.36
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.36
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.35
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.35
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.35
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.35
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.35
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.35
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.34
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.34
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.34
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.34
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.33
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.33
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.33
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.33
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.33
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.33
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.32
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.32
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.31
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.31
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.31
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.31
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.31
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.31
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.3
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.28
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.27
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.27
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.27
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.26
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.26
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.26
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.22
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.22
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.21
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.21
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.18
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.17
COG0517	117	FOG: CBS domain [General function prediction only]	99.03
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.86
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.86
COG2905	610	Predicted signal-transduction protein containing c	98.81
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.66
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.63
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.56
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.4
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.38
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.37
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.29
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.86
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.85
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.76
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.73
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.7
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.7
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.67
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.65
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.61
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.6
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.59
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.59
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.57
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.55
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.52
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.52
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.51
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.48
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.48
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.45
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.43
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.42
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.42
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.41
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.4
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.4
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.39
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.38
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.37
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.37
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.37
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.36
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.35
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.33
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.32
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.31
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.3
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.29
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.29
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.28
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.28
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.27
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.27
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.26
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.25
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.25
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.25
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.25
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.24
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.24
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.22
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.2
COG0517	117	FOG: CBS domain [General function prediction only]	97.2
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.19
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.18
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.17
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.17
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.16
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.16
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.15
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.15
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.15
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.14
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.12
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.12
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.1
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.09
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.08
COG2524	294	Predicted transcriptional regulator, contains C-te	97.07
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.06
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.04
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.02
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.0
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	96.94
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	96.93
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.89
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.86
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.84
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.84
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.82
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.79
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.77
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.64
COG2905	610	Predicted signal-transduction protein containing c	96.64
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	96.63
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.58
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.55
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.52
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.49
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.44
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.32
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	96.29
COG3620	187	Predicted transcriptional regulator with C-termina	95.87
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	94.72
COG4109	432	Predicted transcriptional regulator containing CBS	94.33
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.31
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	93.32
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	90.53
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	90.07
PRK11573	413	hypothetical protein; Provisional	89.72

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-67  Score=487.11  Aligned_cols=314  Identities=25%  Similarity=0.394  Sum_probs=279.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 018729           14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL   93 (351)
Q Consensus        14 ~~~~l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~   93 (351)
                      .|..++.+++|+++||||||+|||++++||.|+++++++|++    +|+++.+++++|+++++++++|||++|++.+.+.
T Consensus         2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasala   77 (423)
T COG4536           2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASALA   77 (423)
T ss_pred             cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence            577788889999999999999999999999999999999997    5789999999999999999999999998876554


Q ss_pred             Hh----hhhhH---HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhccCC
Q 018729           94 DK----LVPPW---AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDL---MLGKGH  163 (351)
Q Consensus        94 ~~----~~~~~---~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~---l~~~~~  163 (351)
                      ..    +++.+   .|..+.|+++++|+|++||++|+.|||++++..++++.++.++|+|++|+++++++.   ++|.+.
T Consensus        78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~  157 (423)
T COG4536          78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL  157 (423)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence            33    23332   467778899999999999999999999999999999999999999999999998775   467542


Q ss_pred             ----CccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729          164 ----AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (351)
Q Consensus       164 ----~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~  239 (351)
                          +...+.||+|.+++.    ++++|...+++++|+.+++++++++|+|||+||+++..++.|++.+ ++.+.+.+++
T Consensus       158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~  232 (423)
T COG4536         158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP  232 (423)
T ss_pred             ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence                346789999999984    5566777788999999999999999999999999999999999998 9999999999


Q ss_pred             CcEEeeEcCCCCceeEEeEhhhhcccccccc----ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcc
Q 018729          240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDA----VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKK  315 (351)
Q Consensus       240 ~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~----~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~  315 (351)
                      |+|+|+|+++.|+++|++|.||++++..+.+    .++..+ .++|+|||+++++.+.|..||+++.|+++||||||.+.
T Consensus       233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~  311 (423)
T COG4536         233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ  311 (423)
T ss_pred             CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence            9999999999999999999999998765533    223333 58999999999999999999999999999999999999


Q ss_pred             cccchhhhhccccCCCCCCCCc
Q 018729          316 EGELFKDNCKKPRGQPEKSSQK  337 (351)
Q Consensus       316 GiVT~~Dil~~l~~~~~~~~~~  337 (351)
                      |+||.+|++|++.|+..+....
T Consensus       312 GLVTLEDIlEEIVGdftde~d~  333 (423)
T COG4536         312 GLVTLEDILEEIVGDFTDEHDT  333 (423)
T ss_pred             eeeeHHHHHHHHhccccccCcc
Confidence            9999999999999998754443

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=4.5e-65  Score=498.63  Aligned_cols=302  Identities=25%  Similarity=0.422  Sum_probs=266.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 018729           22 IALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LV   97 (351)
Q Consensus        22 ~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~~----~~   97 (351)
                      ++|+++||||||+|+|++|+++.|+++++++|++    +|++++++++||+++++|+|+|||++|++++.++..    ++
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577899999999999999999999999999875    577899999999999999999999999887654332    22


Q ss_pred             hh----H----HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hccCCCcc
Q 018729           98 PP----W----AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGHAVL  166 (351)
Q Consensus        98 ~~----~----~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l---~~~~~~~~  166 (351)
                      +.    +    .+++++|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++++   +|.+. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~  156 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN  156 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence            21    1    2345567889999999999999999999999999999999999999999999988765   45443 35


Q ss_pred             ccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeE
Q 018729          167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY  246 (351)
Q Consensus       167 ~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~  246 (351)
                      +|+|||+.+++.    ++++| ++++|++|++|+|+|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||
T Consensus       157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~  230 (408)
T TIGR03520       157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY  230 (408)
T ss_pred             CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence            899999999984    44556 5899999999999999999999999999999999999998 99999999999999999


Q ss_pred             cCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          247 SGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       247 ~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      +++.|+++|++|.||++....+++.++.++ ++++.+||+++++.++++.||+++.|+|+|+||||+..|+||.+|++++
T Consensus       231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDilee  309 (408)
T TIGR03520       231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEE  309 (408)
T ss_pred             cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHH
Confidence            988899999999999986543333457776 7899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC
Q 018729          327 PRGQPEKSS  335 (351)
Q Consensus       327 l~~~~~~~~  335 (351)
                      +.|+..++.
T Consensus       310 ivgei~de~  318 (408)
T TIGR03520       310 IVGDISDEF  318 (408)
T ss_pred             HhCCCCCcC
Confidence            999876543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=4.1e-65  Score=498.97  Aligned_cols=300  Identities=20%  Similarity=0.318  Sum_probs=263.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHh----hhh--
Q 018729           25 VCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LVP--   98 (351)
Q Consensus        25 i~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~~----~~~--   98 (351)
                      +++||||||+|+|++|+++.|+++++++|++    +|++++++++||+++|+|+|+|||++|++++.+...    +++  
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4679999999999999999999999999986    477899999999999999999999999876654322    222  


Q ss_pred             -hHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hccCC----CccccHH
Q 018729           99 -PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRA  170 (351)
Q Consensus        99 -~~~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l---~~~~~----~~~~t~e  170 (351)
                       .+.+++++|+++++|||++||++|.+||+++|+++++|+++++++++|++|+++++++.+   +|.++    ...+|+|
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence             223556778899999999999999999999999999999999999999999998887754   56432    2468999


Q ss_pred             HHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCC
Q 018729          171 ELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP  250 (351)
Q Consensus       171 El~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~  250 (351)
                      ||+.+++.    +++  .++++|++|++|+|+|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus       158 El~~lv~~----~~~--~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHE----SRS--QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHH----Hhh--hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            99999983    322  59999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             CceeEEeEhhhhcccccc-cc---ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          251 TNIIGLILVKNLLSVDYR-DA---VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       251 d~ivGiv~~kdll~~~~~-~~---~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      |+++|++|.||++....+ ++   .++.++ +||+.+||+++++.++|++||+++.|+|+|+||||+..|+||.+|++++
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe  309 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE  309 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence            999999999999864322 11   223354 7899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCC
Q 018729          327 PRGQPEKSSQ  336 (351)
Q Consensus       327 l~~~~~~~~~  336 (351)
                      +.|++.++.+
T Consensus       310 ivGei~de~d  319 (413)
T PRK11573        310 IVGDFTTSMS  319 (413)
T ss_pred             HhCCCCcccC
Confidence            9999876543

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=6.3e-61  Score=473.04  Aligned_cols=313  Identities=27%  Similarity=0.464  Sum_probs=272.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 018729           14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL   93 (351)
Q Consensus        14 ~~~~l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~   93 (351)
                      .+..++++++|+++|||||++|+|++|++|.|+++++++|++    +|..++++.++|+.+++++|+|||++++..+..+
T Consensus         3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~   78 (429)
T COG1253           3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVG   78 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            445667788899999999999999999999999999999875    5778999999999999999999999998766544


Q ss_pred             Hhhh----hhHH-----H----HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-
Q 018729           94 DKLV----PPWA-----A----VLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML-  159 (351)
Q Consensus        94 ~~~~----~~~~-----a----~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l~-  159 (351)
                      ...+    ..+.     +    ++++|+++++|||++||++|++||++++++.++++++++++++|++|++++++++++ 
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~  158 (429)
T COG1253          79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR  158 (429)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322    1111     1    456688999999999999999999999999999999999999999999999988764 


Q ss_pred             --ccC----CCccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHH
Q 018729          160 --GKG----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLN  233 (351)
Q Consensus       160 --~~~----~~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~  233 (351)
                        |.+    +....+++|++ +++    ++.++|.++++|++|++|+|+|++++|+++||||+++++++.+.+.+ ++.+
T Consensus       159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~  232 (429)
T COG1253         159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE  232 (429)
T ss_pred             HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence              433    22346777888 776    57789999999999999999999999999999999999999999998 9999


Q ss_pred             HHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc--ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecC
Q 018729          234 AIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL  311 (351)
Q Consensus       234 ~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~--~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~  311 (351)
                      .+.+++|||+|||+++.|+++|++|.||++....+++  ...... .+|+++||+++++.++|++||+++.|||+|+|||
T Consensus       233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy  311 (429)
T COG1253         233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY  311 (429)
T ss_pred             HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence            9999999999999988999999999999998765543  222222 5699999999999999999999999999999999


Q ss_pred             CCcccccchhhhhccccCCCCCCCCc
Q 018729          312 NEKKEGELFKDNCKKPRGQPEKSSQK  337 (351)
Q Consensus       312 g~~~GiVT~~Dil~~l~~~~~~~~~~  337 (351)
                      |.+.|+||.+|+++++.|+..++.+.
T Consensus       312 G~~~GlVTleDIiEeIvGei~de~d~  337 (429)
T COG1253         312 GGVEGLVTLEDIIEEIVGEIPDEHDE  337 (429)
T ss_pred             CCeEEEeEHHHHHHHHhCCCcCcccc
Confidence            99999999999999999988766543

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.2e-34  Score=249.28  Aligned_cols=179  Identities=22%  Similarity=0.394  Sum_probs=160.3

Q ss_pred             HHHHHHHHhccCCCccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHH
Q 018729          151 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD  230 (351)
Q Consensus       151 ~~~~~~~l~~~~~~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e  230 (351)
                      +..+++.+|..++   -+++||-.+++    .+++.+.++++..+|++++++..+.+|+|||+||+++++++.+++++ +
T Consensus        19 fe~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~   90 (293)
T COG4535          19 FERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E   90 (293)
T ss_pred             HHHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence            3444555665443   36999999998    46778999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEE
Q 018729          231 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY  308 (351)
Q Consensus       231 ~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVv  308 (351)
                      .+..+.++.||||||+.++.|++.||++.|||++....+  ...++++ .||..+|||++.+..+|++|+.++.|||+|+
T Consensus        91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi  169 (293)
T COG4535          91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI  169 (293)
T ss_pred             HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence            999999999999999999999999999999999865433  3567886 8999999999999999999999999999999


Q ss_pred             ecCCCcccccchhhhhccccCCCCCCCCcc
Q 018729          309 KDLNEKKEGELFKDNCKKPRGQPEKSSQKG  338 (351)
Q Consensus       309 De~g~~~GiVT~~Dil~~l~~~~~~~~~~~  338 (351)
                      ||||++-|+||.+|+++.+.|+++.+.+.-
T Consensus       170 DEfGgVsGLVTIEDiLEqIVGdIEDE~Dee  199 (293)
T COG4535         170 DEFGGVSGLVTIEDILEQIVGDIEDEYDEE  199 (293)
T ss_pred             eccCCeeeeEEHHHHHHHHhcccccccchh
Confidence            999999999999999999999998876643

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=100.00  E-value=3.9e-34  Score=284.18  Aligned_cols=327  Identities=50%  Similarity=0.707  Sum_probs=288.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-hHHHHHHHHHcchHHHHHHHHHHHHHH
Q 018729            8 ACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI-HAAKIFPVVKNQHLLLCTLLIGNSLAM   86 (351)
Q Consensus         8 ~~~~~~~~~~l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~-~a~~~l~l~~~~~~~l~tilign~~~~   86 (351)
                      .+|.+.++...-++++|+++++++||.+.++++++-..++.+.+.|..++++ .+.++....++.+.+++|++++|.+++
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~~~   85 (498)
T KOG2118|consen    6 PKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSIAT   85 (498)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhhcc
Confidence            4677777777777777999999999999999999999999999999988775 567788888999999999999999999


Q ss_pred             HH-HHHHHHhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCc
Q 018729           87 EA-LPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAV  165 (351)
Q Consensus        87 ~~-~~~~~~~~~~~~~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~  165 (351)
                      .+ ++.+.....+.|.++.+++..++.|||++|++++.+|.-.+...+.|+.+++.++++|+.|++++. ++.+|...+.
T Consensus        86 e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~~~  164 (498)
T KOG2118|consen   86 EAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNLGE  164 (498)
T ss_pred             ccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccccc
Confidence            88 887777777778888889999999999999999999999999999999999999999999999988 7788887766


Q ss_pred             cccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEee
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  245 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV  245 (351)
                      ...+.++..++..+++|+.+ |.+..+|..++.+++++.++.++|+|||-.+++.++.+..++++....+.++||||+||
T Consensus       165 ~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv  243 (498)
T KOG2118|consen  165 FLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPV  243 (498)
T ss_pred             chhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeee
Confidence            77789999999998888766 99999999999999999999999999999999999999999878888889999999999


Q ss_pred             EcCCCCceeEEeEhhhhcccc----ccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchh
Q 018729          246 YSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFK  321 (351)
Q Consensus       246 ~~~~~d~ivGiv~~kdll~~~----~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~  321 (351)
                      |+++..+.+|.+..+.++...    .....++.+.+.++.+.+|++++..+.++.||+.+.|+++|.. .....|++|..
T Consensus       244 ~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~  322 (498)
T KOG2118|consen  244 YEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLE  322 (498)
T ss_pred             ccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEecc
Confidence            998888888887777776654    2234567777789999999999999999999999999999987 57789999999


Q ss_pred             hhhccccCCCCCCCCcc
Q 018729          322 DNCKKPRGQPEKSSQKG  338 (351)
Q Consensus       322 Dil~~l~~~~~~~~~~~  338 (351)
                      |+ +...++.+.+....
T Consensus       323 ~~-~~~~~ev~de~d~~  338 (498)
T KOG2118|consen  323 DL-EEVVKEVEDEEDKE  338 (498)
T ss_pred             ch-hhhcceeccccccc
Confidence            99 77776665554433

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.97  E-value=9.1e-32  Score=252.48  Aligned_cols=172  Identities=23%  Similarity=0.393  Sum_probs=152.7

Q ss_pred             HHHhccCCCccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHH
Q 018729          156 DLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAI  235 (351)
Q Consensus       156 ~~l~~~~~~~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~  235 (351)
                      ..++|.+.   .|+|||+.+++    ++.++|.++++|++|++|+|+|++++|+++|+||.++++++.+++++ ++++.+
T Consensus        24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i   95 (292)
T PRK15094         24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI   95 (292)
T ss_pred             HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence            33555543   48999999998    46778999999999999999999999999999999999999999998 999999


Q ss_pred             HhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCC
Q 018729          236 MTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE  313 (351)
Q Consensus       236 ~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~  313 (351)
                      .+++|+|+|||+++.|+++|++|.||++.....  ...++.++ ++++++||+++++.++|+.|++++.|+|+|+||||.
T Consensus        96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~  174 (292)
T PRK15094         96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG  174 (292)
T ss_pred             HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence            999999999999877899999999999864322  12346776 788899999999999999999999999999999999


Q ss_pred             cccccchhhhhccccCCCCCCCC
Q 018729          314 KKEGELFKDNCKKPRGQPEKSSQ  336 (351)
Q Consensus       314 ~~GiVT~~Dil~~l~~~~~~~~~  336 (351)
                      ++|+||++|+++.+.|++..+..
T Consensus       175 viGiVTleDIle~ivGei~de~d  197 (292)
T PRK15094        175 VSGLVTIEDILELIVGEIEDEYD  197 (292)
T ss_pred             EEEEeEHHHHHHHHhCCCccccc
Confidence            99999999999999998766544

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.97  E-value=1.4e-29  Score=222.31  Aligned_cols=168  Identities=29%  Similarity=0.484  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHhh-
Q 018729           18 VLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKL-   96 (351)
Q Consensus        18 l~~~~~li~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~~~-   96 (351)
                      ++++++++++|||||++|+|++++++.+++.++++|++    +++++.++++||+++++|+++||++++++.+.+.... 
T Consensus         3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~   78 (183)
T PF01595_consen    3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA   78 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999885    5778999999999999999999999998776443332 


Q ss_pred             ---hh----hHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---ccCC--C
Q 018729           97 ---VP----PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKGH--A  164 (351)
Q Consensus        97 ---~~----~~~a~~i~t~l~lvfgEiiPK~la~~~~~~~a~~~a~~~~~~~~l~~P~~~~~~~~~~~l~---~~~~--~  164 (351)
                         ++    .+.+.++.++++++|||++||++|.+||++++.+.+|++++++++++|+++++.++.+++.   |.+.  +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~  158 (183)
T PF01595_consen   79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED  158 (183)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence               22    2345566778899999999999999999999999999999999999999999999888654   4432  4


Q ss_pred             ccccHHHHHHHHHhcccccccCCCCCHHH
Q 018729          165 VLLRRAELKTFVNFHGNEAGKGGDLTHDE  193 (351)
Q Consensus       165 ~~~t~eEl~~lv~~~~~e~~~~g~l~~~e  193 (351)
                      ..+|+|||+.+++    +++++|.++++|
T Consensus       159 ~~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  159 PAVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            5789999999999    577889999876

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.73  E-value=1.7e-17  Score=165.13  Aligned_cols=155  Identities=13%  Similarity=0.081  Sum_probs=129.7

Q ss_pred             cccHHHHHHHHHhcccccccC------CCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHh--
Q 018729          166 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT--  237 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~------g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~--  237 (351)
                      .++.||+..+++.    ..++      +.++++|++.+++++++++.+|+++|++  ++.+++.+++++ ++++.+.+  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            4678888888873    3333      4799999999999999999999999985  789999999998 99999975  


Q ss_pred             -cCCcE--EeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCc
Q 018729          238 -MGHSR--VPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEK  314 (351)
Q Consensus       238 -~~~sr--~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~  314 (351)
                       .++++  +||.++ .++++|+++.+|++...  ++.+++++|.++++++++++++.++++.|++++.+.++|+|++|++
T Consensus       162 ~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l  238 (449)
T TIGR00400       162 KTKEDIYTLYVTNE-SKHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL  238 (449)
T ss_pred             CCccceeEEEEECC-CCeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence             33444  445454 48999999999998643  3357888866667789999999999999999999999999999999


Q ss_pred             ccccchhhhhccccCC
Q 018729          315 KEGELFKDNCKKPRGQ  330 (351)
Q Consensus       315 ~GiVT~~Dil~~l~~~  330 (351)
                      +|+||.+|+++.+..+
T Consensus       239 vGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       239 VGIVTVDDIIDVIQSE  254 (449)
T ss_pred             EEEEEHHHHHHHHHhh
Confidence            9999999999877554

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.72  E-value=3.8e-17  Score=162.42  Aligned_cols=151  Identities=15%  Similarity=0.225  Sum_probs=129.9

Q ss_pred             ccccHHHHHHHHHhcccccccCCCCCH-----HHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729          165 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (351)
Q Consensus       165 ~~~t~eEl~~lv~~~~~e~~~~g~l~~-----~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~  239 (351)
                      ..+|++|+..++..    .+..|.+++     +|++++++++++++.     |++  +++++++++++. ++++.+.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            45799999999874    345788984     899999999987764     544  568899999998 9999999999


Q ss_pred             CcEEeeEcCCC--CceeEEeEhhhhcccccccccccccccc-ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccc
Q 018729          240 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE  316 (351)
Q Consensus       240 ~sr~PV~~~~~--d~ivGiv~~kdll~~~~~~~~~l~~i~~-~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~G  316 (351)
                      ++++||++++.  ++++|+|+.+|++... ..+.++.++|. .+++++++++++.++++.|++++.+.++|+|++|+++|
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG  189 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG  189 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            99999998754  6999999999997543 23457888855 38999999999999999999999999999999999999


Q ss_pred             ccchhhhhcccc
Q 018729          317 GELFKDNCKKPR  328 (351)
Q Consensus       317 iVT~~Dil~~l~  328 (351)
                      +||.+|+++.+.
T Consensus       190 iVT~~DIl~~~~  201 (450)
T TIGR01302       190 LITMKDIVKRRK  201 (450)
T ss_pred             EEEhHHhhhccc
Confidence            999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.66  E-value=1.9e-16  Score=146.63  Aligned_cols=139  Identities=19%  Similarity=0.216  Sum_probs=123.0

Q ss_pred             HHHHHhhhc-----ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc
Q 018729          194 TTIIAGALE-----LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (351)
Q Consensus       194 ~~~i~~vl~-----l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~  268 (351)
                      ..||++++.     -+=.+|.|+|+|..+..++..+++++ +..+...++|||||||+++. ..++|+|+.||+....+ 
T Consensus       171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~-  247 (432)
T COG4109         171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP-  247 (432)
T ss_pred             HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC-
Confidence            456665554     33468999999999999999999998 99999999999999999876 79999999999987543 


Q ss_pred             ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCC
Q 018729          269 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQ  336 (351)
Q Consensus       269 ~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~  336 (351)
                       +.++..+|.+.|.+|.+.+++..+-+.|-..+..|.||+|++..++|+||+.|+++.++.-..+++.
T Consensus       248 -~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqv  314 (432)
T COG4109         248 -STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQV  314 (432)
T ss_pred             -CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcc
Confidence             4688899889999999999999999999999999999999999999999999999999876666644

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.62  E-value=1.1e-14  Score=132.01  Aligned_cols=157  Identities=13%  Similarity=0.176  Sum_probs=128.0

Q ss_pred             cccHHHHHHHHHhcccccccCCCCCHHHHHHHHh-------hhcccccccccccccCcceEEEeCCCCccHHHHHHHHhc
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAG-------ALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM  238 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~-------vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~  238 (351)
                      .++.+|+...+..    -.|--.++.++-+-+-+       .-.+.+.++.|||++  ++++++.+++++ ++.+.+.++
T Consensus       202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            3678888887763    23344566655333222       223578899999987  899999999998 999999999


Q ss_pred             CCcEEeeEcCCCCceeEEeEhhhhcccccc---------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEe
Q 018729          239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK  309 (351)
Q Consensus       239 ~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD  309 (351)
                      +...+||.|++ .+++|+|..+|+++....         .+.+++.+|..++.++.++++..+++..|...+.|..+|+|
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld  353 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD  353 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence            99999999876 899999999999873211         13567888666889999999999999999999999999999


Q ss_pred             cCCCcccccchhhhhccccCC
Q 018729          310 DLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       310 e~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +.|+++|+||..|++.++..+
T Consensus       354 ~~g~lvGIvsQtDliaal~r~  374 (382)
T COG3448         354 AAGKLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             CCCcEEEEeeHHHHHHHHHHH
Confidence            999999999999999876544

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.59  E-value=1.5e-15  Score=135.36  Aligned_cols=128  Identities=16%  Similarity=0.248  Sum_probs=115.9

Q ss_pred             HHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--ccccc
Q 018729          197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR  274 (351)
Q Consensus       197 i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~  274 (351)
                      +..+....+.+|+++|++  ++.++++++|+. |+.+.+.+++....||.++  |+++|+++..|+..+..++  +..++
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~  237 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS  237 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence            345556778999999987  779999999998 9999999999999999975  5999999999998876654  46789


Q ss_pred             ccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       275 ~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      ++|.+.++++.+++.+.|+++.|.+++....+|+|.+|+.+|++|+.|++..+.+
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999998865

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.57  E-value=1.6e-14  Score=145.13  Aligned_cols=150  Identities=18%  Similarity=0.214  Sum_probs=128.0

Q ss_pred             ccccHHHHHHHHHhcccccccCCCCC-----HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729          165 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (351)
Q Consensus       165 ~~~t~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~  239 (351)
                      ..+|++|+...+..    .+..|.|+     ++++++++++.++     +++|.+  ++.++++++++. ++++.+.+++
T Consensus        50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence            45799999999873    44567787     5888999988875     457754  668899999998 9999999999


Q ss_pred             CcEEeeEcCCCCceeEEeEhhhhcccccccccccccccc-ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccccc
Q 018729          240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGE  318 (351)
Q Consensus       240 ~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~-~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiV  318 (351)
                      ++++||++++ ++++|+++.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.++|+|++|+++|+|
T Consensus       118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI  195 (486)
T PRK05567        118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI  195 (486)
T ss_pred             CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9999999865 8999999999986542 23356888865 6889999999999999999999999999999999999999


Q ss_pred             chhhhhcccc
Q 018729          319 LFKDNCKKPR  328 (351)
Q Consensus       319 T~~Dil~~l~  328 (351)
                      |..|+++.+.
T Consensus       196 T~~DLl~~~~  205 (486)
T PRK05567        196 TVKDIEKAEE  205 (486)
T ss_pred             EhHHhhhhhh
Confidence            9999998764

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.49  E-value=1.2e-13  Score=109.87  Aligned_cols=107  Identities=13%  Similarity=0.199  Sum_probs=93.5

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++.++++++++. ++++.+.+++++++||.+++ ++++|+++.+|++....++..++.+++.+++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            456789999998 99999999999999999875 8999999999997654333345777766888999999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |++.+.+.++|+|++|++.|++|..|+.+
T Consensus        81 ~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          81 MERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=2e-13  Score=110.77  Aligned_cols=107  Identities=16%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-----ccccc------cccccCceeC
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VPLRK------MIIRRIPRVS  285 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-----~~l~~------i~~~~~~~V~  285 (351)
                      ++.++++++++. ++.+.+.+++++++||++++ ++++|+++.+|++....++.     .++.+      .+..++.+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999998 99999999999999999874 89999999999986432211     11222      1224567899


Q ss_pred             CCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          286 EDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       286 ~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++++.++++.|.+++.+.++|+|++|+++|++|..|+++
T Consensus        80 ~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            9999999999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.7e-13  Score=109.18  Aligned_cols=106  Identities=12%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----cccccccccccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~l~~i~~~~~~~V~~~~~l~  291 (351)
                      ++.+++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++......     ..++.+++.+++.+++++.++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence            456789999998 99999999999999999876 7999999999998643221     2367777667888999999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|.+.+.+.++|+|+ |+++|++|..|+++
T Consensus        80 ~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          80 EAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            9999999999989999988 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.47  E-value=2.8e-13  Score=108.52  Aligned_cols=107  Identities=17%  Similarity=0.291  Sum_probs=93.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cccccccccccCceeCCCCCHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL  294 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~~~~~~V~~~~~l~~lL  294 (351)
                      ++.+++.++++. ++.+.+.+++++++||.+++ ++++|+++.+|+.....+.  +.++.++|..++..+++++++.+++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence            357789999998 99999999999999999865 7999999999987643221  2467888777888999999999999


Q ss_pred             HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.|.+++.+..+|+|++|+++|++|..|+++
T Consensus        80 ~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          80 RIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            9999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.47  E-value=2.2e-13  Score=108.31  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=93.5

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++.+++.+++++ ++.+.+.+++++++||++++ ++++|+++.+|++...  .+.++.+++.+++.+++++.++.++++.
T Consensus         3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~~   78 (108)
T cd04596           3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAHM   78 (108)
T ss_pred             ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence            567899999998 99999999999999999865 8999999999997642  2346888766788899999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |++++.+.++|+|++|+++|++|..|+++
T Consensus        79 ~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          79 MIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2e-13  Score=108.96  Aligned_cols=106  Identities=15%  Similarity=0.217  Sum_probs=92.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---cccccccccccCceeCCCCCHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI  293 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---~~~l~~i~~~~~~~V~~~~~l~~l  293 (351)
                      ++..++.+++++ ++++.+.+++++++||++++ ++++|+++.+|++......   +.++.+++.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            456789999998 89999999999999999875 7999999999988643321   246777767788899999999999


Q ss_pred             HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++.|++++.+.++|+|+ |+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2.4e-13  Score=109.21  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=91.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~  291 (351)
                      ++.+++.++++. ++++.+.+++++.+||++++.++++|+++.+|+++...+     ...++.+++.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            567899999998 999999999999999998643799999999998763211     12457777667888999999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|.+++.+.++|+|+ |+++|++|..|++.
T Consensus        81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          81 YCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            9999999999999999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.45  E-value=3.2e-13  Score=109.77  Aligned_cols=107  Identities=15%  Similarity=0.240  Sum_probs=92.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--------------cccccccccccCc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP  282 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--------------~~~l~~i~~~~~~  282 (351)
                      ++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|++......              +.++.+++.+++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            567889999998 99999999999999999876 8999999999987543221              2256777667888


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++++++.++++.|++++.+..+|+|++|+++|++|..|++.
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999999999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.44  E-value=4.7e-13  Score=106.65  Aligned_cols=109  Identities=36%  Similarity=0.534  Sum_probs=93.2

Q ss_pred             cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc--ccccccccccCceeCCCCCHHHH
Q 018729          216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDI  293 (351)
Q Consensus       216 ~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~--~~l~~i~~~~~~~V~~~~~l~~l  293 (351)
                      +++..++.++++. ++.+.+.+.+++.+||.+++.++++|+++.+|++....++.  .++.++ .+++.+++++.++.++
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~   78 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL   78 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence            3678899999998 99999999999999999864378999999999987543221  245565 5788899999999999


Q ss_pred             HHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      ++.|.+++.+.++|+|++|+++|++|..|++++
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~~  111 (111)
T cd04590          79 LEEMRKERSHMAIVVDEYGGTAGLVTLEDILEE  111 (111)
T ss_pred             HHHHHhcCCcEEEEEECCCCEEEEeEHHHhhcC
Confidence            999999999999999999999999999998763

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=6.3e-13  Score=104.65  Aligned_cols=95  Identities=14%  Similarity=0.203  Sum_probs=85.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      +++++++++++. ++.+.+.+++++.+||++++.++++|+++.+|+.+...             +.++++++++.++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence            578899999998 99999999999999999864478999999999875321             6789999999999999


Q ss_pred             HhhCCceEEEEEecC-CCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDL-NEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~-g~~~GiVT~~Dil~  325 (351)
                      |.+++.+..+|+|++ |+++|++|..|++.
T Consensus        68 m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          68 LLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=3e-13  Score=110.08  Aligned_cols=108  Identities=15%  Similarity=0.196  Sum_probs=92.7

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---------------cccccccccccC
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI  281 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---------------~~~l~~i~~~~~  281 (351)
                      ++..++.++++. ++++.+.+++++++||++++.++++|+++.+|++....++               ..++.+++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            456789999998 9999999999999999986447899999999997543221               235667766778


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++++++++.++++.|++.+.+.++|+|++|+++|+||..|+++
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.43  E-value=5.5e-13  Score=107.16  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=92.3

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----cccccccccccCceeCCCCCHHHH
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYDI  293 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~~~l~~i~~~~~~~V~~~~~l~~l  293 (351)
                      +..+++++++. ++.+.+.+.+++++||++++ ++++|+++.+|++....++    ..++.+++.++++++++++++.++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence            45678999998 99999999999999999875 8999999999988643221    224677777888999999999999


Q ss_pred             HHHHhhCCceEEEEEecC--CCcccccchhhhhcc
Q 018729          294 LNEFQKGHSHIAVVYKDL--NEKKEGELFKDNCKK  326 (351)
Q Consensus       294 L~~~~~~~~~~aiVvDe~--g~~~GiVT~~Dil~~  326 (351)
                      ++.|++++.+.++|+|++  |+++|+||..|++++
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            999999999999999988  899999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=6.8e-13  Score=108.65  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc----c-------------ccccccc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV----P-------------LRKMIIR  279 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~----~-------------l~~i~~~  279 (351)
                      ++.+++.++++. ++++.+.+++++.+||++++ ++++|+++.+|++....++..    +             ..+.+.+
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            567899999998 99999999999999999876 899999999998865422111    0             1123456


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            7889999999999999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.42  E-value=7.1e-13  Score=105.41  Aligned_cols=106  Identities=17%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cccccccccccCceeCCCCCHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL  294 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~~~~~~V~~~~~l~~lL  294 (351)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.+|+++...++  ..++.+++.+++.+++++.++.+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence            456789999998 9999999999999999976  7899999999998754322  2457777667888999999999999


Q ss_pred             HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.|++.+.+..+|+|++|++.|++|..|+++
T Consensus        79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=6e-13  Score=107.83  Aligned_cols=107  Identities=18%  Similarity=0.232  Sum_probs=92.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-------------ccccccccccccCce
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR  283 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-------------~~~~l~~i~~~~~~~  283 (351)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|++.....             ...++.+++.+++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            456789999998 99999999999999999875 899999999998764321             134567776678889


Q ss_pred             eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++++++.++++.|++.+.+.++|+|++|+++|++|..|+++
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          80 VTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=8.1e-13  Score=106.28  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=93.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~  291 (351)
                      ++..++.++++. ++.+.+.++++..+||.+++ ++++|+++.+|++.....     ...++.+++.+++..+++++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   79 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH   79 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence            457789999998 99999999999999999876 899999999998754321     13467787778888999999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|.+++.+..+|+|+.|+++|++|..|+++
T Consensus        80 ~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          80 DVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            9999999999999999999899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=5.9e-13  Score=106.07  Aligned_cols=107  Identities=21%  Similarity=0.297  Sum_probs=92.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccccCceeCCCCCHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL  294 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~~~V~~~~~l~~lL  294 (351)
                      ++.+++.+++++ ++.+.+.+.+++++||++++ ++++|+++.+|+......  .+.++.+++.+++++++++.++.+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence            456789999998 99999988999999999875 789999999998764322  22467787778899999999999999


Q ss_pred             HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.|++++.+.++|+|++|+++|++|..|+.+
T Consensus        80 ~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          80 RLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            9999999999999998899999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=9.2e-13  Score=105.10  Aligned_cols=107  Identities=14%  Similarity=0.225  Sum_probs=92.4

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---cccccccccccCceeCCCCCHHHHH
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDIL  294 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---~~~l~~i~~~~~~~V~~~~~l~~lL  294 (351)
                      +..++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|++....++   +.++.+++.++++.+++++++.+++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   80 (112)
T cd04624           3 VVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAA   80 (112)
T ss_pred             CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHH
Confidence            45789999998 99999999999999999876 8999999999987653221   2467777678888999999999999


Q ss_pred             HHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      +.|.+++.+.++|+|++|++.|++|..|++++
T Consensus        81 ~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~~  112 (112)
T cd04624          81 KLMRKNNIRHHLVVDKGGELVGVISIRDLVRE  112 (112)
T ss_pred             HHHHHcCccEEEEEcCCCcEEEEEEHHHhccC
Confidence            99999989999999999999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.41  E-value=9.4e-13  Score=104.64  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=92.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccCceeCCCCCHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI  293 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~~~V~~~~~l~~l  293 (351)
                      ++.+++.++++. ++++.+.+.+++.+||+++  ++++|+++.+|+++....   ...++.+++.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence            456789999998 9999999999999999976  799999999998865422   2346777767788899999999999


Q ss_pred             HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++.|++.+.+.++|+|++|++.|++|..|+++
T Consensus        79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            99999999999999999999999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.40  E-value=4.4e-13  Score=127.98  Aligned_cols=120  Identities=13%  Similarity=0.090  Sum_probs=103.4

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccC
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI  281 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~  281 (351)
                      ..+|+++|.+..++.++++++++. ++.+.+.+++.+.+||++++ ++++|+++.+|+.+....   .+.++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            467999997743478999999998 99999999999999999876 899999999997653321   2346788877888


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      .+++++.++.++++.|.+++...++|+|++|+++|+||..|++++
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            899999999999999999999999999999999999999999864

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.40  E-value=9.1e-13  Score=105.12  Aligned_cols=107  Identities=15%  Similarity=0.196  Sum_probs=92.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----cccccccccccCceeCCCCCHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  292 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~~~l~~i~~~~~~~V~~~~~l~~  292 (351)
                      ++.+++++++++ ++++.+.+.+++++||++++ ++++|+++.+|+.....+.    ..++.+++.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   79 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED   79 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence            456789999998 99999999999999999876 7899999999997643221    14677877788999999999999


Q ss_pred             HHHHHhhCCceEEEEEec-CCCcccccchhhhhc
Q 018729          293 ILNEFQKGHSHIAVVYKD-LNEKKEGELFKDNCK  325 (351)
Q Consensus       293 lL~~~~~~~~~~aiVvDe-~g~~~GiVT~~Dil~  325 (351)
                      +++.|++.+.+.++|+|+ +|+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            999999999999999998 899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.40  E-value=5.8e-13  Score=110.74  Aligned_cols=137  Identities=20%  Similarity=0.244  Sum_probs=107.1

Q ss_pred             cCCCCCHHH---HHHHHhhhccc--ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEh
Q 018729          185 KGGDLTHDE---TTIIAGALELT--EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV  259 (351)
Q Consensus       185 ~~g~l~~~e---~~~i~~vl~l~--~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~  259 (351)
                      |.|.+++.=   +++++...+-+  ..+++.+|+.  +++.+.+++++. ++.++|.++|||.+||.++  |.++|-++-
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE  113 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE  113 (187)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence            457777643   33343333333  4689999964  889999999998 9999999999999999986  799999999


Q ss_pred             hhhccccccc-----cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          260 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       260 kdll~~~~~~-----~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .|+.+...++     ...++++|-.+.+.|.++.++..+-..+..+  +..+|+ |+|+++|+||..|+++.+.|
T Consensus       114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence            9987765332     3567888888889999999998777766544  334454 88999999999999998765

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.40  E-value=6.7e-13  Score=127.02  Aligned_cols=120  Identities=18%  Similarity=0.080  Sum_probs=102.6

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR  279 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~  279 (351)
                      ...+|+++|++..++.++++++++. ++++.+.++++..+||.+++ ++++|+++.+|+.+....    .+.++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            5678999998755778999999998 99999998888888888765 899999999998754322    13568898778


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      ++.++++++++.++++.|.+++.+..+|+| .|+++|+||..|+++.
T Consensus       278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        278 GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            889999999999999999999999999987 4899999999999864

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=1.3e-12  Score=104.84  Aligned_cols=105  Identities=16%  Similarity=0.130  Sum_probs=89.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---------cccccccccccCceeCCC
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED  287 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---------~~~l~~i~~~~~~~V~~~  287 (351)
                      ++++++.++++. ++++.+.+++++++||++++ ++++|+++.+|+++...+.         +.++.+++.+++..++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            567899999998 99999999999999999865 7899999999997654321         245677766678899999


Q ss_pred             CCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          288 MPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       288 ~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++.++++.|.+.+  ..+|+|++|+++|++|..|+++
T Consensus        80 ~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          80 ADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            99999999998754  5788999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.39  E-value=1.1e-12  Score=105.16  Aligned_cols=107  Identities=12%  Similarity=0.125  Sum_probs=89.1

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcC-CcEEeeEcCCCCceeEEeEhhhhccccccc--ccccccccc--ccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMII--RRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~~l~~i~~--~~~~~V~~~~~l~  291 (351)
                      ++.+++.++++. ++.+.+.+++ ++++||++++ ++++|+++.+|++....+.  +.++.+++.  .+++.+++++++.
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence            456789999998 9999887665 8999999865 8999999999988754321  346777642  2356899999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|++++.+.++|+|++|+++|++|..|+++
T Consensus        80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          80 EVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            9999999999999999999899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.39  E-value=1.3e-12  Score=103.86  Aligned_cols=106  Identities=17%  Similarity=0.193  Sum_probs=91.3

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc---ccccccccccCceeCCCCCHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI  293 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~---~~l~~i~~~~~~~V~~~~~l~~l  293 (351)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.+|++.....+.   .++.+++.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence            456789999998 9999999999999999986  89999999999986443221   14556667888999999999999


Q ss_pred             HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++.|++++.+.++|+|++|+++|++|..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            99999999999999998899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.39  E-value=1.8e-12  Score=102.62  Aligned_cols=106  Identities=14%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++..+++++++. ++++.+.+++++++||++++ ++++|+++.+|++.... ...++.+++.+.+.++++++++.+++..
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            456789999998 99999999999999999875 79999999999876432 2346777767788899999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |++.+.+.++|+|++|+++|++|.+|+++
T Consensus        80 ~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          80 VLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            99999999999999999999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.7e-12  Score=103.74  Aligned_cols=105  Identities=12%  Similarity=0.160  Sum_probs=90.9

Q ss_pred             EEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCCCCHHHHH
Q 018729          219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDIL  294 (351)
Q Consensus       219 ~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~~~l~~lL  294 (351)
                      ..++.++++. ++++.+.+++++++||++++ ++.+|+++.+|++....+    .+.++.+++..++.++++++++.+++
T Consensus         4 ~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           4 SCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             EEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            6689999998 99999999999999999875 889999999999763221    13467777667888999999999999


Q ss_pred             HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.|++++.+..+|+|++|+++|++|..|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999988999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.5e-12  Score=105.50  Aligned_cols=107  Identities=12%  Similarity=0.175  Sum_probs=91.6

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-------------cccccccccccccCce
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR  283 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-------------~~~~~l~~i~~~~~~~  283 (351)
                      ++.+++.++++. ++++.+.+++++.+||++++ ++++|+++.+|++....             ....++.+++.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            567889999998 99999999999999999865 89999999999875310             0123566666677889


Q ss_pred             eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++++++.++++.|++.+.+.++|+|++|++.|++|..|+++
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          80 VTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            999999999999999999999999999999999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.38  E-value=2.3e-12  Score=101.84  Aligned_cols=104  Identities=16%  Similarity=0.251  Sum_probs=90.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++.+++.+.+++ ++++.+.+.+++++||+++  ++++|+++.+|++...  ...++.+++..++.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            567889999998 9999998889999999974  7999999999998642  2345778766778889999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |++++.+.++|+|++|+++|++|..|+++
T Consensus        78 ~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          78 MFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.7e-12  Score=105.72  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--cc-----------cccccccccCce
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AV-----------PLRKMIIRRIPR  283 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~~-----------~l~~i~~~~~~~  283 (351)
                      ++..++.++++. ++++.+.+++++++||++++.++++|+++.+|+++...++  ..           ...+++.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            456789999998 9999999999999999986437899999999987643211  00           011234567789


Q ss_pred             eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhh
Q 018729          284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDN  323 (351)
Q Consensus       284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Di  323 (351)
                      ++++.++.++++.|.+++.+.++|+|++|+++|+||..|+
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence            9999999999999999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.37  E-value=2.5e-12  Score=101.97  Aligned_cols=106  Identities=18%  Similarity=0.201  Sum_probs=90.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCC-CCCHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN  295 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~-~~~l~~lL~  295 (351)
                      +...++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|++.... .+.++.+++..++.++.. ++++.++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            456789999998 99999999999999999876 89999999999875432 335677775555666666 999999999


Q ss_pred             HHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          296 EFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       296 ~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      .|++.+.+.++|+|++|+++|+||.+|+++
T Consensus        80 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          80 LLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            999999999999999999999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.6e-12  Score=107.37  Aligned_cols=106  Identities=19%  Similarity=0.262  Sum_probs=90.8

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----c--------------------cc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP  272 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~--------------------~~  272 (351)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|++......    .                    .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            456789999998 99999999999999999875 8999999999987643221    1                    15


Q ss_pred             ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.+++.++++++++++++.++++.|.+.+.+.++|+|+ |+++|++|..|+++
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            66776677889999999999999999999999999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.36  E-value=3e-12  Score=102.52  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=90.5

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccCceeCCCCCHHHHH
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL  294 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~~~V~~~~~l~~lL  294 (351)
                      .++++.++++. ++++.+.+.++..+||++++ ++++|+++.+|++....+   .+.++.+++..++..+++++++.+++
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL   81 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence            36789999998 99999998999999999875 899999999998753321   12457777656678899999999999


Q ss_pred             HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.|.+++.+.++|+|++|+++|++|.+|++.
T Consensus        82 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          82 ALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            9999999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.36  E-value=3.6e-12  Score=100.61  Aligned_cols=104  Identities=11%  Similarity=0.005  Sum_probs=89.6

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++....   .++.+++.+++..+++++++.++++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence            456789999998 99999999999999999865 89999999999986432   24667655566779999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |.+++.+.++|+|++|+++|++|..|++.
T Consensus        77 ~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          77 MFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.36  E-value=2.4e-12  Score=103.84  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--------------cccccccccccCc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP  282 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--------------~~~l~~i~~~~~~  282 (351)
                      ++.+++.+.++. ++++.+.+.+++.+||+++  ++++|+++.+|++......              +.++.+++.+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            456789999998 9999999999999999986  7999999999988653211              1346666667788


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++++++.+++..|++.+.+.++|+|++|+++|+||..|+++
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          79 TVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            9999999999999999999999999999999999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.36  E-value=6.3e-12  Score=123.70  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=128.6

Q ss_pred             CCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC-----cEEeeEcCCCCceeEEeEhhhh
Q 018729          188 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH-----SRVPVYSGNPTNIIGLILVKNL  262 (351)
Q Consensus       188 ~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~d~ivGiv~~kdl  262 (351)
                      .++++|++.++..+.+.+.+++.+|++  +.++++.+.|++ +++..+++.+.     ..+.|.|.+ ++++|++..+++
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L  189 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL  189 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence            378899999999999999999999987  889999999998 99999986543     334455654 689999999999


Q ss_pred             ccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC---------CC
Q 018729          263 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP---------EK  333 (351)
Q Consensus       263 l~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~---------~~  333 (351)
                      +...+  +..+.++|.+.+.+|+.++..+++-+.|++++.-.++|||++|+++|++|.+|+++.+..+.         ..
T Consensus       190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G~~  267 (451)
T COG2239         190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAGPL  267 (451)
T ss_pred             hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcCCC
Confidence            87543  45788988788899999999999999999999999999999999999999999997654332         23


Q ss_pred             CCCcccchhHHHHhh
Q 018729          334 SSQKGEMDAATFILN  348 (351)
Q Consensus       334 ~~~~~~~~~~~~~~~  348 (351)
                      +..+.+.+.++..+|
T Consensus       268 ~~~~~~~~v~~~~k~  282 (451)
T COG2239         268 DVPDLFASVLKLVKK  282 (451)
T ss_pred             CCchhccCHHHHHhh
Confidence            445666666665554

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=2.6e-12  Score=107.00  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=91.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---------------------------
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------------------  269 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---------------------------  269 (351)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|++......                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            456789999998 99999999999999999875 8999999999998643211                           


Q ss_pred             cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.++.+++..++.++++++++.++++.|.+++.+.++|+|+ |+++|++|..|+++
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            23577776667889999999999999999999999999988 99999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.35  E-value=1.2e-12  Score=134.36  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=104.8

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----cccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  278 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~  278 (351)
                      ++..+|+|+|+|  +...++++++++ |+.+.+.+++++.+||.|++ ++++|+++.+|+.+...+    ++.++.+++.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            567889999976  457789999998 99999999999999999875 799999999998763211    1246778877


Q ss_pred             ccCceeCCCCCHHHHHHHHhhCCceEEEEEecC--CCcccccchhhhhccccC
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL--NEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~--g~~~GiVT~~Dil~~l~~  329 (351)
                      +++..+++++++.++++.|++++.+..+|+|++  |+++|+||++|+++.+..
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            788899999999999999999999999999987  479999999999987643

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=4.7e-12  Score=99.06  Aligned_cols=94  Identities=9%  Similarity=0.104  Sum_probs=84.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++.+++.++++. ++++.+.+.+++.+||.+++ ++++|+++.+|+....             .+.+++++.++.++++.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~   66 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK   66 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence            467889999998 99999999999999999865 8999999999987632             16789999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |++++.+.++|+|+.|+++|++|..|+++
T Consensus        67 m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          67 MKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.8e-12  Score=103.66  Aligned_cols=106  Identities=17%  Similarity=0.237  Sum_probs=90.5

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc------ccccccccccccCceeCCCCCH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL  290 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~------~~~~l~~i~~~~~~~V~~~~~l  290 (351)
                      ++..++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+++...+      ...++.+++.+++.++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   79 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI   79 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence            346789999998 99999998899999999865 789999999998763221      2346777766778899999999


Q ss_pred             HHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          291 YDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       291 ~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      .++++.|.+++.+.++|+|+ |+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          80 VDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            99999999999988999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.35  E-value=3.3e-12  Score=101.71  Aligned_cols=105  Identities=12%  Similarity=0.133  Sum_probs=90.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-c---ccccccccccccCceeCCCCCHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DAVPLRKMIIRRIPRVSEDMPLYD  292 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-~---~~~~l~~i~~~~~~~V~~~~~l~~  292 (351)
                      ++.+++.++++. ++.+.+.+.+++++||.++  ++++|+++.+|++.... .   .+.++.+++.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence            457789999998 9999999999999999975  89999999999875321 1   124577776788899999999999


Q ss_pred             HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++.|++.+.+.++|+|+ |+++|++|.+|+++
T Consensus        79 ~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          79 ALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            999999999999999998 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.35  E-value=4.4e-12  Score=99.84  Aligned_cols=103  Identities=9%  Similarity=0.103  Sum_probs=89.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++..++.++++. ++++.+.+++++++||.+ + ++++|+++.+|++....  +.++.+++..++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            456789999998 999999999999999997 4 79999999999986432  345777766788899999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |.+++...++|+|+ |+++|++|..|++.
T Consensus        77 ~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          77 MEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            99999999999998 99999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.34  E-value=3.3e-12  Score=101.64  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=87.6

Q ss_pred             EeCCCCccHHHHHHHHhcCC-----cEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHH
Q 018729          221 LDLDATLTLDTLNAIMTMGH-----SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN  295 (351)
Q Consensus       221 v~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~  295 (351)
                      +++++++. ++++.+.++++     ..+||++++ ++++|+++.+|++...  .+.++.+++..++..+++++++.++++
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            56788998 89999988773     678999765 8999999999998642  234677876567889999999999999


Q ss_pred             HHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          296 EFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       296 ~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      .|++.+.+.++|+|++|+++|++|..|+++.+
T Consensus        78 ~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          78 LFEKYDLLALPVVDEEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             HHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence            99999999999999999999999999998753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.34  E-value=5.5e-12  Score=99.69  Aligned_cols=100  Identities=14%  Similarity=0.165  Sum_probs=87.3

Q ss_pred             EEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHh
Q 018729          219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ  298 (351)
Q Consensus       219 ~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~  298 (351)
                      .+++.++++. ++++.+.+.+++++||+++  ++++|+++.+|++....   .++.+++..++.+++++.++.++++.|+
T Consensus         4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~   77 (104)
T cd04594           4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM   77 (104)
T ss_pred             eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence            3578999998 9999999999999999985  89999999999986422   2466666677889999999999999999


Q ss_pred             hCCceEEEEEecCCCcccccchhhhhc
Q 018729          299 KGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       299 ~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++.+.++|+|+ |+++|++|.+|+++
T Consensus        78 ~~~~~~~~Vv~~-~~~iGvit~~dl~~  103 (104)
T cd04594          78 KNKTRWCPVVDD-GKFKGIVTLDSILD  103 (104)
T ss_pred             HcCcceEEEEEC-CEEEEEEEHHHhhc
Confidence            999999999984 99999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.34  E-value=4.1e-12  Score=101.10  Aligned_cols=105  Identities=15%  Similarity=0.231  Sum_probs=91.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccccCceeCCCCCHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL  294 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~~~V~~~~~l~~lL  294 (351)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|+......  ...++.+++.+++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            456789999998 9999999899999999986  789999999998754321  23567787778888999999999999


Q ss_pred             HHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          295 NEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       295 ~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.|++++.+.++|+| +|+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          80 ELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            999999999999998 799999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.34  E-value=2.6e-12  Score=106.44  Aligned_cols=106  Identities=13%  Similarity=0.194  Sum_probs=90.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc--------------------------ccc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA  270 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~--------------------------~~~  270 (351)
                      ++.+++.++++. ++++.+.++++.++||++++ ++++|+++.+|++....                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            567889999998 99999999999999999865 89999999999875321                          112


Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      .++.+++..+++.+++++++.++++.|++.+.+..+|+| +|+++|++|..|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            456677667788999999999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=4.8e-12  Score=102.36  Aligned_cols=107  Identities=12%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccc--cCceeCCCCCH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR--RIPRVSEDMPL  290 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~--~~~~V~~~~~l  290 (351)
                      +..+++.++++. ++++.+.+++.+.+||.+++ ++++|+++.+|+......    ...++.++|.+  +++++++++++
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            456789999998 99999999999999999865 789999999998765421    12345666543  67899999999


Q ss_pred             HHHHHHHhhCCceEEEEEecC---CCcccccchhhhhc
Q 018729          291 YDILNEFQKGHSHIAVVYKDL---NEKKEGELFKDNCK  325 (351)
Q Consensus       291 ~~lL~~~~~~~~~~aiVvDe~---g~~~GiVT~~Dil~  325 (351)
                      .++++.|.+++.+..+|+|+.   |+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            999999999999999999987   69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=6.7e-12  Score=99.25  Aligned_cols=104  Identities=21%  Similarity=0.212  Sum_probs=89.8

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~  296 (351)
                      ++++++.++++. ++++.+.+.+++++||++++ ++++|+++.++++....  +.++.+++.+++.++++++++.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            567889999998 89999999999999999876 89999999999875422  235666666778899999999999999


Q ss_pred             HhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          297 FQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       297 ~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      |++++.+.++|+|+ |+++|++|.+|+++
T Consensus        78 ~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          78 MVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             HHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            99999999999985 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.33  E-value=3.8e-12  Score=101.57  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=89.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-c---cc-ccccccccccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DA-VPLRKMIIRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-~---~~-~~l~~i~~~~~~~V~~~~~l~  291 (351)
                      ++.+++.+++++ ++.+.+.+++++++||.++  ++++|+++.+|++.... .   .. .++.+++.+++.+++++.++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~   78 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL   78 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence            456789999998 8999999899999999975  89999999999874221 1   11 467777667788899999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|.+++.+..+|+|++|+++|++|..|++.
T Consensus        79 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          79 EALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            9999999999988899999899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=5e-12  Score=103.58  Aligned_cols=107  Identities=17%  Similarity=0.242  Sum_probs=89.7

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----------------ccccccccccc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR  279 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----------------~~~~l~~i~~~  279 (351)
                      ++..++.++++. ++++.+.+.+++.+||++++ ++++|+++.+|+......                 .+.++.+++.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            456789999998 99999999999999999876 899999999998743210                 12356777668


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEe--cCCCcccccchhhhhc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK--DLNEKKEGELFKDNCK  325 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD--e~g~~~GiVT~~Dil~  325 (351)
                      +++++++++++.++++.|.+++.+.++|++  +.|+++|+||..|+++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            889999999999999999999888888873  5699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.33  E-value=4e-12  Score=101.51  Aligned_cols=107  Identities=14%  Similarity=0.138  Sum_probs=91.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCCCCHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD  292 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~~~l~~  292 (351)
                      ++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.++++....+    ...++.+++.+++.++++++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            445678999998 89999988899999999875 799999999988754322    123577876677889999999999


Q ss_pred             HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++.|.+++.+.++|+|++|+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999998899999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.33  E-value=3.7e-12  Score=127.00  Aligned_cols=121  Identities=12%  Similarity=0.108  Sum_probs=105.7

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCce
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR  283 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~  283 (351)
                      +..+++++|++  +++++++++++. ++.+.+.+++++.+||++++ ++++|+|+.+|+....  ...++.++|.+++.+
T Consensus        87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it  160 (479)
T PRK07807         87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT  160 (479)
T ss_pred             hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence            35567899965  668899999998 99999999999999999865 7899999999986532  235688988888999


Q ss_pred             eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +++++++.++++.|.+++.+..+|+|++|+++|+||..|+++.....
T Consensus       161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999865543

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.7e-12  Score=103.27  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=91.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--------------ccccccccccccCc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP  282 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--------------~~~~l~~i~~~~~~  282 (351)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.+|+......              ...++.+++.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            467789999998 9999999999999999985  799999999998753211              12356677677888


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++++++.++++.|++++.+.++|+|++|+++|++|..|+++
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             eeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            9999999999999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=6e-12  Score=100.96  Aligned_cols=105  Identities=12%  Similarity=0.238  Sum_probs=87.2

Q ss_pred             eEEEeCCCCccHHHHHHHHhcC-CcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCC--CCH
Q 018729          218 AFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSED--MPL  290 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~--~~l  290 (351)
                      +..++.+.++. ++++.+.+++ +..+||.+ + ++++|+++.+|++....+    .+.++.+++.+++++++++  .++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l   79 (115)
T cd04620           3 PLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDI   79 (115)
T ss_pred             CeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCH
Confidence            45688999998 9999998888 67778876 3 789999999998864322    1246777766777888887  689


Q ss_pred             HHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          291 YDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       291 ~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      .++++.|.+++.+.++|+|++|+++|++|.+|+++
T Consensus        80 ~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          80 FTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            99999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=5.3e-12  Score=103.41  Aligned_cols=106  Identities=15%  Similarity=0.252  Sum_probs=85.5

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc----------ccccccccccccccCce--e-
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V-  284 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~----------~~~~~~l~~i~~~~~~~--V-  284 (351)
                      +.+++.++++. ++++.+.++++..+||.+++ ++++|+++.+|+....          ...+.++.++|.+++..  + 
T Consensus         3 ~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~   80 (126)
T cd04640           3 PIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALD   80 (126)
T ss_pred             CeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhcccc
Confidence            46789999998 99999988999999999865 7999999999987521          11234577775433322  2 


Q ss_pred             ---CCCCCHHHHHHHHhhCCceEEEEEecC-CCcccccchhhhhc
Q 018729          285 ---SEDMPLYDILNEFQKGHSHIAVVYKDL-NEKKEGELFKDNCK  325 (351)
Q Consensus       285 ---~~~~~l~~lL~~~~~~~~~~aiVvDe~-g~~~GiVT~~Dil~  325 (351)
                         ++++++.++++.|.+++.+.++|+|+. |+++|+||..|+++
T Consensus        81 ~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          81 LEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence               368899999999999999999999986 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=9e-12  Score=99.36  Aligned_cols=106  Identities=12%  Similarity=0.179  Sum_probs=90.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc-ccc----ccccccccccccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~-~~~----~~~~l~~i~~~~~~~V~~~~~l~  291 (351)
                      ++.+++.++++. ++.+.+.+++++.+||+++  ++++|+++.+|++.. ..+    ...++.+++.+.+..+++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence            457789999998 9999999999999999976  899999999998632 111    11237777667888999999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|++.+.+.++|+|++|+++|++|..|+++
T Consensus        79 ~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          79 EAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.31  E-value=7.1e-12  Score=99.88  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=89.2

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCceeCCCCCHHHH
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI  293 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~~V~~~~~l~~l  293 (351)
                      ...++.+.++. ++++.+.+.+++.+||+++  ++++|+++.+|++....+    ...++.+++.++.+.+++++++.++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04589           3 PLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNA   79 (111)
T ss_pred             CEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHH
Confidence            46788999998 9999999999999999986  689999999998764321    2346777766778899999999999


Q ss_pred             HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++.|++++.+.++|+|+ |+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          80 LLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            99999999999999986 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.31  E-value=5.7e-12  Score=100.22  Aligned_cols=101  Identities=21%  Similarity=0.110  Sum_probs=87.5

Q ss_pred             cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHH
Q 018729          216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI  293 (351)
Q Consensus       216 ~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~l  293 (351)
                      ++...++++++++ ++.+.+.+.+++++||+++.  .++++|+++.+|+.....+       +|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence            4677899999998 99999999999999999862  3789999999998754321       556778899999999999


Q ss_pred             HHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          294 LNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       294 L~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++.|++++.+.++|++ +|+++|+||.+|+++
T Consensus        74 ~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          74 HQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            9999999999999985 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.31  E-value=6.6e-12  Score=100.83  Aligned_cols=107  Identities=18%  Similarity=0.181  Sum_probs=89.0

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhccccccccccccccccccCceeCC--CCCHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD  292 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~--~~~l~~  292 (351)
                      ++.+++.++++. ++++.+.+++++++||+++.  .++++|+++.+|++.... ...++.+++.+++..+..  ++++.+
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            456788999998 99999998999999999862  378999999999875322 234577776555666644  999999


Q ss_pred             HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++.|++++.+..+|+|++|+++|+||.+|+++
T Consensus        81 ~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          81 ANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             HHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            999999999999999999999999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.31  E-value=2.9e-12  Score=105.08  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=90.6

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc----cccccccccccccCceeCCCCCHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD  292 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~----~~~~~l~~i~~~~~~~V~~~~~l~~  292 (351)
                      ++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|++....    ..+.++.++|.+++..++++.++.+
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            557889999998 99999999999999999875 78999999999885321    2346789998889999999999999


Q ss_pred             HHHHHh---------hCCceEEEEEecCCCcccccchhhhhcc
Q 018729          293 ILNEFQ---------KGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       293 lL~~~~---------~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      +.+.+.         +.+.+..+|+|++|+++|+||..|+++.
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            998543         3356677788989999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.30  E-value=7.7e-12  Score=101.01  Aligned_cols=106  Identities=10%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-------------cccccccccccccCce
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR  283 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-------------~~~~~l~~i~~~~~~~  283 (351)
                      ++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+.....             ....++.+++..++.+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            456789999998 99999999999999999876 89999999999875321             1124566776678889


Q ss_pred             eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++++++.++++.|++++.+.++|+|+ |+++|++|..|+++
T Consensus        80 i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          80 VHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            999999999999999999999999987 99999999999876

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.28  E-value=1.1e-11  Score=98.09  Aligned_cols=104  Identities=21%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----cccccccccccCceeCCCCCHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  292 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~~~l~~i~~~~~~~V~~~~~l~~  292 (351)
                      ++.+++.++++. ++.+.+.+++++++||+++  ++++|+++.+|+.+...+.    ..++.+++.+++..+++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   78 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE   78 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence            356789999998 9999999999999999985  7999999999988753221    24566776677888999999999


Q ss_pred             HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++.|++ ..+ ++|+|++|+++|++|.+|+++
T Consensus        79 ~~~~~~~-~~~-~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          79 LSELLDR-GNV-AVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHHh-CCc-eeEEecCCeEEEEEeHHHhhc
Confidence            9999988 444 678899999999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.27  E-value=7.2e-12  Score=125.19  Aligned_cols=118  Identities=18%  Similarity=0.255  Sum_probs=98.5

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----cccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  278 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~  278 (351)
                      ++..+++++|.+  ++.++++++++. ++++.+.+++++.+||++++ ++++|+|+.+|++....+    .+.++.++|.
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~  407 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS  407 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence            678999999976  678899999998 99999999999999999865 789999999998764321    1246778876


Q ss_pred             ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      +++.++++++++.++++.|++++  ..+ |+++|+++|+||+.|+++.+
T Consensus       408 ~~~~~v~~~~~l~~a~~~~~~~~--~~v-V~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       408 KKFIQIGEGEKLSDLSKFLEKNS--SAI-VTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCCeEECCcCcHHHHHHHHHHCC--eeE-EEECCEEEEEEEHHHHHHhh
Confidence            77789999999999999998764  344 45579999999999998865

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.1e-11  Score=100.11  Aligned_cols=105  Identities=14%  Similarity=0.230  Sum_probs=89.8

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--------------ccccccccccccCc
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP  282 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--------------~~~~l~~i~~~~~~  282 (351)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.+|++.....              ...++.+++.+++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            456789999998 9999999999999999985  899999999998754221              12356666667888


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +++++.++.++++.|++.+.+.++|+|+ |+++|++|..|+++
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          79 TIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            9999999999999999999999999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.8e-11  Score=97.51  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=88.8

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~  291 (351)
                      ++..+++++++. ++++.+.+++++.+||.++  ++++|+++.+|++.....     ...++.+++.+++.++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   78 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence            456789999998 9999999999999999985  489999999998864211     23457777666788899999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|.+++.+.++|+|++ +++|++|..|+++
T Consensus        79 ~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999999889999975 8999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.26  E-value=2.1e-11  Score=122.45  Aligned_cols=155  Identities=9%  Similarity=0.057  Sum_probs=117.4

Q ss_pred             cccHHHHHHHHHhcccccc-cCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEe
Q 018729          166 LLRRAELKTFVNFHGNEAG-KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP  244 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~-~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~P  244 (351)
                      .+|+.++-..+...|--+- -.+.=.++.++.++.+.+++     ..|++  +++++++++++. ++++.+.+++++.+|
T Consensus        64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lp  135 (505)
T PLN02274         64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVC  135 (505)
T ss_pred             ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence            4567776665542110000 00111345567788888543     22654  668899999998 999999999999999


Q ss_pred             eEcCC--CCceeEEeEhhhhcccccccccccccccccc--CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccch
Q 018729          245 VYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF  320 (351)
Q Consensus       245 V~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~--~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~  320 (351)
                      |++++  .++++|+|+.+|+.... ..+.++.++|.++  +++++++.++.++++.|++++.+.++|+|+.|+++|+||+
T Consensus       136 VvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr  214 (505)
T PLN02274        136 VTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTR  214 (505)
T ss_pred             EEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence            99863  36899999999986532 3346788886545  6699999999999999999999999999999999999999


Q ss_pred             hhhhccccC
Q 018729          321 KDNCKKPRG  329 (351)
Q Consensus       321 ~Dil~~l~~  329 (351)
                      +|+++.+..
T Consensus       215 ~DIlk~~~~  223 (505)
T PLN02274        215 TDVKRVKGY  223 (505)
T ss_pred             HHHHHHhhC
Confidence            999988764

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=2.3e-11  Score=95.69  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=91.3

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-c---cccccccccCceeCCCCCHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V---PLRKMIIRRIPRVSEDMPLYD  292 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-~---~l~~i~~~~~~~V~~~~~l~~  292 (351)
                      ++..++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|++....... .   .+.+++..++.+++++.++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            456788999998 99999999999999999876 89999999999986543221 1   144566678889999999999


Q ss_pred             HHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          293 ILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       293 lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++..|++.+.+.++|+|++|+++|+++..|+++
T Consensus        80 ~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          80 AAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.26  E-value=2.4e-11  Score=121.99  Aligned_cols=150  Identities=11%  Similarity=0.157  Sum_probs=116.3

Q ss_pred             cccHHHHHHHHHhcccccccCCCC-----CHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDL-----THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  240 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l-----~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~  240 (351)
                      .+|+.++-..+...|.    -|.+     -+++.+.++.+-+++     +.|++  +.+++++++++. ++++.+.++++
T Consensus        60 ~vt~~~ma~a~a~~Gg----lGvi~~~~~~e~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~  127 (495)
T PTZ00314         60 TVTEHKMAIAMALMGG----IGVIHNNCSIEEQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGF  127 (495)
T ss_pred             ccccHHHHHHHHHCCC----eEEecCCCCHHHHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCC
Confidence            4567776665543211    1222     234566777776544     46654  447899999998 99999999999


Q ss_pred             cEEeeEcCC--CCceeEEeEhhhhccccccccccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccc
Q 018729          241 SRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE  316 (351)
Q Consensus       241 sr~PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~G  316 (351)
                      +.+||.+++  .++++|+++.+|+.... ..+.++.++|.+  ++.+++++.++.++++.|++++.+..+|+|++|+++|
T Consensus       128 s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liG  206 (495)
T PTZ00314        128 SSILITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVA  206 (495)
T ss_pred             cEEEEEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            999999863  36899999999987432 234578888654  6788999999999999999999999999999999999


Q ss_pred             ccchhhhhcccc
Q 018729          317 GELFKDNCKKPR  328 (351)
Q Consensus       317 iVT~~Dil~~l~  328 (351)
                      +||++|+++...
T Consensus       207 IIT~~DIl~~~~  218 (495)
T PTZ00314        207 LVSRSDLKKNRG  218 (495)
T ss_pred             EEEehHhhhccc
Confidence            999999998754

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.22  E-value=3.3e-11  Score=97.09  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=86.6

Q ss_pred             eEEEeCCCCccHHHHHHHHhcC-CcEEeeEcCCCCceeEEeEhhhhcccccc-------ccccccccccccCceeCCCCC
Q 018729          218 AFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDMP  289 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~d~ivGiv~~kdll~~~~~-------~~~~l~~i~~~~~~~V~~~~~  289 (351)
                      +.+++.++++. ++.+.+.+.+ ++++||.++  ++++|+++.+|++.....       .+.++.++|..++..++++++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~   79 (119)
T cd04598           3 APTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTP   79 (119)
T ss_pred             cCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCC
Confidence            45678999998 9999998877 899999986  899999999998753221       234677876677889999999


Q ss_pred             HHHHHHHHhhCCc---eEEEEEecCCCcccccchhhhhc
Q 018729          290 LYDILNEFQKGHS---HIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       290 l~~lL~~~~~~~~---~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      +.+++..|.+++.   .-.+|+|++|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          80 LEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999988874   23467888999999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=3.2e-11  Score=101.29  Aligned_cols=105  Identities=15%  Similarity=0.224  Sum_probs=89.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----------------------------
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------------------------  268 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----------------------------  268 (351)
                      ++++++.++++. ++.+.+.+++++.+||+++  ++++|+++.+|++.....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            457889999998 9999999999999999985  799999999998753211                            


Q ss_pred             --------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          269 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       269 --------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                              ...++.+++.+++..+++++++.+++..|++.+.+.++|+|+ |+++|++|..|+++
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                    123455666678889999999999999999999988999988 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.21  E-value=5.7e-11  Score=119.24  Aligned_cols=129  Identities=14%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhcccccc
Q 018729          191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR  268 (351)
Q Consensus       191 ~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~~  268 (351)
                      +++.+++..+-++.   .+.++.|    .++++++++. ++++.+.+++++.+||++++  .++++|+|+.+|+......
T Consensus        87 e~qa~lV~kVk~~~---~g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~  158 (502)
T PRK07107         87 ESEAAMVRRVKNYK---AGFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS  158 (502)
T ss_pred             HHHHHHHHHHHHHh---cCCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence            56666665555543   2223333    4789999998 99999999999999999862  4799999999998643222


Q ss_pred             ccccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          269 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       269 ~~~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      .+.++.++|.+  ++.+++++.++.++++.|++++....+|+|++|+++|+||.+|+++..
T Consensus       159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            34678898654  567899999999999999999999999999999999999999999864

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=4.9e-11  Score=95.02  Aligned_cols=105  Identities=12%  Similarity=0.168  Sum_probs=87.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~~~~~V~~~~~l~  291 (351)
                      ++..++.++++. ++++.+.+++++.+||.+ + ++++|+++.+|++.....     ...++.+++..++..+++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   78 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID   78 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence            567889999998 899999888888888774 4 799999999998864321     12467787666678899999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      ++++.|.+++.+..+|+|+ |+++|++|..|+++
T Consensus        79 ~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~  111 (112)
T cd04625          79 EVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence            9999999999998999985 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.18  E-value=4.7e-11  Score=110.95  Aligned_cols=111  Identities=15%  Similarity=0.093  Sum_probs=96.2

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccccCc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP  282 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~~  282 (351)
                      .+|+++|.+. ++..+++++++. ++++.+.+.+++.+||.+++ ++++|+++.+|+......   .+.++.++|.+++.
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999764 267899999998 99999999999999999875 899999999998764321   23568888778888


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccc
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL  319 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT  319 (351)
                      .+++++++.++++.|.+.+.+..+|+|+.|+++|+|+
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            9999999999999999999999999999999999874

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.17  E-value=1.1e-10  Score=116.49  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=103.0

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCcee
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV  284 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V  284 (351)
                      ..+++++|++  +.+++++++++. ++++.+.+++++.+||.++  ++++|+|+.+|+....  ...++.++|.+++.++
T Consensus        87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~litv  159 (475)
T TIGR01303        87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVTA  159 (475)
T ss_pred             hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceEe
Confidence            5567788976  457899999998 9999999999999999874  6899999999986542  2356889888889999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          285 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +++.++.++++.|.+++.+.++|+|++|+++|+||..|+++.....
T Consensus       160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       160 PADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999865443

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.03  E-value=1.4e-09  Score=87.01  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=94.6

Q ss_pred             ccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-c--cccccccccCceeC
Q 018729          209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V--PLRKMIIRRIPRVS  285 (351)
Q Consensus       209 ~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-~--~l~~i~~~~~~~V~  285 (351)
                      +++|.  .++.++.++.++. ++...+.+++++++||.++  ++++|+++.+|+......+. .  ++.++|.+++..+.
T Consensus         2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~   76 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD   76 (117)
T ss_pred             ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence            34554  4678899999998 9999999999999999975  37999999999988764332 1  47777666888999


Q ss_pred             CCCCHHHHHHHHhh-CCceEEEEEecCC-Ccccccchhhhh
Q 018729          286 EDMPLYDILNEFQK-GHSHIAVVYKDLN-EKKEGELFKDNC  324 (351)
Q Consensus       286 ~~~~l~~lL~~~~~-~~~~~aiVvDe~g-~~~GiVT~~Dil  324 (351)
                      ++.++.++++.|.+ ++.+..+|+|+.+ +++|++|..|++
T Consensus        77 ~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          77 PDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             CCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            99999999999999 6999999999986 999999999974

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.86  E-value=7.7e-09  Score=86.07  Aligned_cols=95  Identities=14%  Similarity=0.126  Sum_probs=76.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc---c------------ccccc----
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---P------------LRKMI----  277 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~---~------------l~~i~----  277 (351)
                      ++..+++++++. ++++.+.+++++.+||++++ ++++|+++.+|++........   .            +.+++    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            567899999998 99999999999999999875 899999999998865432110   1            12232    


Q ss_pred             -----cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCC
Q 018729          278 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE  313 (351)
Q Consensus       278 -----~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~  313 (351)
                           .+++.++++++++.++++.|.+++.+.++|+|+.+.
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~  120 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD  120 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence                 256788999999999999999999999999987553

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.86  E-value=9.6e-09  Score=105.14  Aligned_cols=120  Identities=15%  Similarity=0.165  Sum_probs=99.7

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----------------
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------------  268 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----------------  268 (351)
                      ..+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|+.....+                
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            3679999975  678899999998 99999999999999999876 899999999998652100                


Q ss_pred             ---------------------------------------------c----------------------------------
Q 018729          269 ---------------------------------------------D----------------------------------  269 (351)
Q Consensus       269 ---------------------------------------------~----------------------------------  269 (351)
                                                                   +                                  
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                         0                                  


Q ss_pred             ----------------------ccccccccc-ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          270 ----------------------AVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       270 ----------------------~~~l~~i~~-~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                                            ..++.++|. +++.++++++++.++.+.|.+++.+..+|+|++|+++|++|..|+++.
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~  302 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP  302 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence                                  012334444 578899999999999999999999999999999999999999999975


Q ss_pred             cc
Q 018729          327 PR  328 (351)
Q Consensus       327 l~  328 (351)
                      ..
T Consensus       303 ~~  304 (546)
T PRK14869        303 VR  304 (546)
T ss_pred             cc
Confidence            43

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.81  E-value=4.3e-09  Score=103.76  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=103.9

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc----ccccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMII  278 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~----~~~~~l~~i~~  278 (351)
                      |--.+++++|+.  ..+++++..++. ++.+.+.+.|.|.+-+.+++ +...||++.+|+....-    ..+.++.++|.
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT  221 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT  221 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence            344568888876  447899999998 99999999999988888765 89999999999876432    23568999988


Q ss_pred             ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      .|++.|..+..+.+++-.|.+++.+..+|. |+|+++|++|..||+....
T Consensus       222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFS  270 (610)
T ss_pred             cCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhC
Confidence            999999999999999999999999999887 5699999999999998765

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.66  E-value=2.5e-08  Score=69.93  Aligned_cols=55  Identities=29%  Similarity=0.496  Sum_probs=50.2

Q ss_pred             cccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       208 v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      |+++|+|  ++.++++++++. ++.+.+.+++++++||++++ ++++|+++.+|++...
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence            5789987  779999999998 99999999999999999876 9999999999998653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.63  E-value=1.5e-08  Score=71.12  Aligned_cols=55  Identities=16%  Similarity=-0.047  Sum_probs=50.6

Q ss_pred             cccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          274 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       274 ~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +++|.++++++++++++.++++.|++++.+.++|+|++|+++|++|..|+++.+.
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            4566778999999999999999999999999999999999999999999998753

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=2.9e-07  Score=90.40  Aligned_cols=122  Identities=11%  Similarity=0.029  Sum_probs=96.3

Q ss_pred             cccccccccCcc-eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCcee
Q 018729          206 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV  284 (351)
Q Consensus       206 ~~v~~iMtpr~~-v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V  284 (351)
                      .++.++|.+... .+....+.+.. ++++.+.+.+.++..|++++ +++.|+++.+++.....+ ..++.+.+......|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence            567788854221 12334556776 89999999999999999876 899999999998754332 235666555667899


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          285 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                      ++++++.+++..+.+...+ .+|+|+.|+++|+||..++++.+.+..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        351 DAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG  396 (400)
T ss_pred             CCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence            9999999999999988777 778899999999999999999886543

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.40  E-value=7.6e-07  Score=86.77  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=93.4

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc-----cc-cccc------ccccCcee
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VP-LRKM------IIRRIPRV  284 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~-----~~-l~~i------~~~~~~~V  284 (351)
                      .+..+..+.++. ++++.|.+.+.|.+||++.+ ++.+|.....|+.....++.     .. +.+.      -..+++.+
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588999999997 99999999999999999986 67799999999876543321     11 2211      11235779


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          285 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                      .++.++.+++..|..++.|-+.|||++|.++|+||..|++..+....
T Consensus       316 ~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p  362 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP  362 (381)
T ss_pred             eecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999998876553

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.38  E-value=1.4e-06  Score=84.51  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             EEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhh
Q 018729          220 SLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQK  299 (351)
Q Consensus       220 ~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~  299 (351)
                      ....+.+.. ++++.+...+.+...|++++ ++..|++..+++....... ..+.+.+......+++++++.+++..|.+
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVLK  330 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHHh
Confidence            445566776 88999998899999999876 7999999999987654332 34666556667889999999999999999


Q ss_pred             CCceEEEEEecCCCcccccchhhhhccccC
Q 018729          300 GHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       300 ~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      ++.+ .+|+|+.|+++|+||..++++.+.+
T Consensus       331 ~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       331 AGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             CCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            9999 8888999999999999999998755

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.37  E-value=2.7e-07  Score=91.97  Aligned_cols=120  Identities=21%  Similarity=0.205  Sum_probs=95.7

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCC----ceeEEeEhhhhccccc------c----
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT----NIIGLILVKNLLSVDY------R----  268 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d----~ivGiv~~kdll~~~~------~----  268 (351)
                      +++.+|+|+|.+  ++++++.-..+. .+.+.+..+.|..|||+|+..+    .+.|++-.+.++....      +    
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            356789999977  899999999998 8999999999999999986543    5778876666542110      0    


Q ss_pred             ----------------c----------------cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccc
Q 018729          269 ----------------D----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE  316 (351)
Q Consensus       269 ----------------~----------------~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~G  316 (351)
                                      .                -.++.++|-..|++||+++++..++..|++-+....+||+..++.+|
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g  735 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG  735 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence                            0                02234444455889999999999999999999988899988889999


Q ss_pred             ccchhhhhc
Q 018729          317 GELFKDNCK  325 (351)
Q Consensus       317 iVT~~Dil~  325 (351)
                      ++|++|+..
T Consensus       736 ilTR~D~~~  744 (762)
T KOG0474|consen  736 ILTRKDLAR  744 (762)
T ss_pred             EEehhhhhh
Confidence            999999984

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.29  E-value=1.3e-06  Score=83.20  Aligned_cols=153  Identities=12%  Similarity=0.126  Sum_probs=117.2

Q ss_pred             ccccHHHHHHHHHhcccccccCCC-CCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEE
Q 018729          165 VLLRRAELKTFVNFHGNEAGKGGD-LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV  243 (351)
Q Consensus       165 ~~~t~eEl~~lv~~~~~e~~~~g~-l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~  243 (351)
                      ..+|+.|......+.+--+-=... =.+++..+++.+-.|..-   -++-|    +.+.++.++. ++++....++++.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g---~~~~p----~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENG---FINNP----IVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcc---cccCC----cccCCcccch-hhhhhccccccccc
Confidence            356777776655543211000001 145778889888887753   33333    5678899998 99999999999999


Q ss_pred             eeEcCC--CCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchh
Q 018729          244 PVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFK  321 (351)
Q Consensus       244 PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~  321 (351)
                      ||.++.  ..+++|+|+.+|+-.. .++...+.++|...+++.|...++.++=+.+++++..-.+|||+.|+++-++++.
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rt  221 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRT  221 (503)
T ss_pred             ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehh
Confidence            999643  3689999999997544 4445778888777779999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q 018729          322 DNCKK  326 (351)
Q Consensus       322 Dil~~  326 (351)
                      |+.+.
T Consensus       222 Dl~k~  226 (503)
T KOG2550|consen  222 DLMKN  226 (503)
T ss_pred             hhhhh
Confidence            99875

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.86  E-value=2.5e-05  Score=62.10  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            3568899964  567899999998 99999999999999999876 78999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.85  E-value=3.4e-05  Score=61.01  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=51.3

Q ss_pred             hcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       201 l~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+..+.++.++|.+  ++.+++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus        54 ~~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          54 LDILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             CccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            34455679999976  457899999998 99999999999999999865 89999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.76  E-value=4e-05  Score=60.91  Aligned_cols=58  Identities=26%  Similarity=0.409  Sum_probs=50.6

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.|..++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            467899998755567899999998 99999999999999999864 78999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.73  E-value=6.5e-05  Score=60.32  Aligned_cols=55  Identities=18%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+++++|.+  ++..++.++++. ++++.+.++++..+||++++ ++++|+++.+|+..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            679999976  567899999998 99999999999999999875 78999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.70  E-value=2.2e-05  Score=80.53  Aligned_cols=118  Identities=12%  Similarity=-0.003  Sum_probs=86.9

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---------------c
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------D  269 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------------~  269 (351)
                      ..+|+++|+ +.++.+++++++++ ++.+.+.+++++++||++++ ++++|+++.+|++.....               +
T Consensus       245 ~~~V~~iM~-~~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~  321 (546)
T PRK14869        245 SIPVSYIMT-TEDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEG  321 (546)
T ss_pred             CCCHHHhcc-CCCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCccccccccc
Confidence            578999997 24678899999998 99999999999999999876 899999999999864321               0


Q ss_pred             --c---------ccccccccccCcee---CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          270 --A---------VPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       270 --~---------~~l~~i~~~~~~~V---~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                        +         .++.+++.+.|..+   |...+...+.+.|++.+.....++.. ..+.|++|-.+.++.
T Consensus       322 ~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~ll~gIlsDT~~f~~  391 (546)
T PRK14869        322 IEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-LLLAAILSDTLLFKS  391 (546)
T ss_pred             hhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHHhcCccC
Confidence              0         12333333344433   33455667778888888887777654 467899998888763

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.70  E-value=7.2e-05  Score=75.14  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=87.9

Q ss_pred             ccccccccCc---ceEEEeCC-CCccHHHHHHHHhcCCcEEeeEc-CCCCceeEEeEhhhhcccccc----c--------
Q 018729          207 TAKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYS-GNPTNIIGLILVKNLLSVDYR----D--------  269 (351)
Q Consensus       207 ~v~~iMtpr~---~v~~v~~~-~t~~~e~~~~~~~~~~sr~PV~~-~~~d~ivGiv~~kdll~~~~~----~--------  269 (351)
                      -..++|.|+.   ....++.+ .+++ |....+.++.|+.+||+- ++....+|++..+|+......    +        
T Consensus       544 ~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~  622 (696)
T KOG0475|consen  544 LAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI  622 (696)
T ss_pred             hhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc
Confidence            3455665543   34555554 7887 889999999999999874 455789999999998643210    0        


Q ss_pred             ---------------cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          270 ---------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       270 ---------------~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                                     ...+++++.-.|..|...+|...+++.|++-+..-..| +++|++.|+||.+|++..
T Consensus       623 ~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  623 YFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKKDCLRH  693 (696)
T ss_pred             ccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEE-ccCCeeEeeeehHHHHHh
Confidence                           12345554455778999999999999999888777766 789999999999999864

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.67  E-value=6.8e-05  Score=59.74  Aligned_cols=56  Identities=20%  Similarity=0.312  Sum_probs=49.2

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.+++++|..  +..++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            4678899965  667899999998 99999999999999999865 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.65  E-value=7.9e-05  Score=59.77  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCC--CceeEEeEhhhhcc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS  264 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~--d~ivGiv~~kdll~  264 (351)
                      ..+.+++++|+.-.++.+++.++++. ++++.+.+++++++||++++.  ++++|+++.+|+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            34567888996323577899999998 999999999999999998652  58999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.61  E-value=5.8e-05  Score=60.59  Aligned_cols=55  Identities=18%  Similarity=0.129  Sum_probs=49.4

Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                      .++.++|.+++.++++++++.++++.|++.+....+|+|+.|+++|++|..|+.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            4577877788889999999999999999999899999999999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.60  E-value=5.7e-05  Score=75.58  Aligned_cols=112  Identities=13%  Similarity=0.112  Sum_probs=84.4

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCce
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR  283 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~  283 (351)
                      ++.+++++|+|  ++.++++++++. ++++.+.++++..+||+|++ ++++|+++.+|++....++  ...+++......
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~  266 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK  266 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence            55689999976  568899999998 99999999999999999876 7999999999998765432  224543333333


Q ss_pred             eCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       284 V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      ..++..+.+.+..|.+++.+..+|.    .+.|++| ..++..
T Consensus       267 ~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~  304 (449)
T TIGR00400       267 PLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISN  304 (449)
T ss_pred             CCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHH
Confidence            3345677888888888888877763    5677777 555543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.59  E-value=0.00019  Score=72.50  Aligned_cols=116  Identities=15%  Similarity=0.154  Sum_probs=81.8

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc---cccccccccC
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI  281 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~---~l~~i~~~~~  281 (351)
                      +.+++++|++ .++++++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|++......+.   .-..+.....
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa  222 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA  222 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence            4579999973 4678899999998 99999999999999999876 899999999999875421110   0111112222


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEe-cCCCcccccchhhhhcc
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYK-DLNEKKEGELFKDNCKK  326 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvD-e~g~~~GiVT~~Dil~~  326 (351)
                      ..++++  -.+..+.|.+.+.+.. |+| .+|+..|+++.-+.++.
T Consensus       223 i~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        223 VGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             cccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence            333331  2677788888888855 556 46888887776665554

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.59  E-value=0.00022  Score=72.13  Aligned_cols=62  Identities=24%  Similarity=0.321  Sum_probs=55.7

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ..+.+++++|+|..+++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++..
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence            45678999999877889999999998 99999999999999999865 7899999999998754

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.57  E-value=6.3e-05  Score=49.22  Aligned_cols=48  Identities=17%  Similarity=0.021  Sum_probs=42.8

Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      ++.+++++.++.++++.|++.+.+.++|+|++|+++|+++..|+.+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            356789999999999999999999999999889999999999987654

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.55  E-value=0.00011  Score=58.48  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=50.7

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..+.++.++|.+  +..+++.++++. ++++.+.+.+.+++||++++ ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            345678999965  668899999998 99999999999999999865 79999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.52  E-value=0.00016  Score=57.31  Aligned_cols=56  Identities=14%  Similarity=0.354  Sum_probs=48.8

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.+++++|.+  .+.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            3568899965  567899999998 99999999999999999865 78999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.52  E-value=8.9e-05  Score=60.27  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=48.0

Q ss_pred             cccccccccccCcceEEEe----CCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~----~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|.+...+..++    +++++. ++++.|.+++.+++||++++.++++|+++.+|++.
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4567999997644444443    578887 89999999999999999865358999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.00016  Score=56.85  Aligned_cols=55  Identities=15%  Similarity=0.421  Sum_probs=48.6

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.+++++|.+  ++.+++.++++. ++++.+.+++.+++||+++  ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            5678999965  668899999998 9999999999999999975  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.48  E-value=0.00025  Score=71.21  Aligned_cols=99  Identities=10%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccccccccc----ccccC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI  281 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i----~~~~~  281 (351)
                      ..++++|++  ++.++++++++. ++++.+.+++..++||++++ ++++|+|+.+|+++.....  +..+.    .....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa  221 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA  221 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence            569999986  678999999998 99999999999999999875 7999999999998754322  11111    11111


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEec-CCC
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD-LNE  313 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe-~g~  313 (351)
                        +.-.....+.+..|.+.+... +++|- +|.
T Consensus       222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        222 --VGINGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             --hccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence              222334678888888888887 66674 454

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.48  E-value=0.0002  Score=55.88  Aligned_cols=56  Identities=20%  Similarity=0.393  Sum_probs=48.5

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +..++++|.++  ..+++.++++. ++++.+.+++.+++||++++ |+++|+++.+|++.
T Consensus        51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSKD--LVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCCC--CeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            35688999664  57789999998 99999999999999999876 79999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.45  E-value=0.00022  Score=55.66  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++++++++. ++++.|.+++..++||.+++.++++|+++.+|++.
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999998 99999999999999999865478999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.43  E-value=0.00019  Score=67.27  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=92.9

Q ss_pred             HHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccccc
Q 018729          193 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVP  272 (351)
Q Consensus       193 e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~  272 (351)
                      -++.++++-...=.++++||.+......-...+..+ .+++.+...+.+.+-+++ ..++.+|+++..++...       
T Consensus       261 V~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~-------  331 (386)
T COG4175         261 VRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPR-VALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA-------  331 (386)
T ss_pred             HHHHHhcCChhheeeHHHhhcccccccccccccccc-hhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------
Confidence            456777777777789999998522222222222333 577788877777777776 34679999998776543       


Q ss_pred             ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                         .+..++..++.++++.+.+...++...++++| ||.|+++|+++...+++++.+
T Consensus       332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~aVv-de~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVAVV-DEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ---cccccccccCccchHHHHHHHHhcCCCceeEE-cCCCcEEEEecHHHHHHHHhc
Confidence               23556778999999999999999999999855 999999999999999998765

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.42  E-value=0.00023  Score=56.07  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=48.4

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .++.++|.+  ...+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            578899965  557899999998 99999999999999999876 78999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.42  E-value=0.00034  Score=54.53  Aligned_cols=54  Identities=15%  Similarity=0.278  Sum_probs=47.0

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +++++|.+  ...+++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            47888976  346789999998 99999999999999999875 78999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.41  E-value=0.00049  Score=69.10  Aligned_cols=102  Identities=10%  Similarity=0.125  Sum_probs=70.0

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccccccccccccc--Cce
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPR  283 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~--~~~  283 (351)
                      .+++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++.....  +..+..-+.  ---
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa  219 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA  219 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence            579999986  678899999998 99999999999999999865 7899999999998753321  111110000  001


Q ss_pred             eCCCCCHHHHHHHHhhCCceEEEEEe-cCCCc
Q 018729          284 VSEDMPLYDILNEFQKGHSHIAVVYK-DLNEK  314 (351)
Q Consensus       284 V~~~~~l~~lL~~~~~~~~~~aiVvD-e~g~~  314 (351)
                      +.-.....+.+..+.+.+... +|+| -+|+-
T Consensus       220 v~~~~~~~~ra~~Lv~aGVd~-i~~D~a~g~~  250 (475)
T TIGR01303       220 VGINGDVGGKAKALLDAGVDV-LVIDTAHGHQ  250 (475)
T ss_pred             eeeCccHHHHHHHHHHhCCCE-EEEeCCCCCc
Confidence            223345567777777777666 3445 34443

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.40  E-value=0.023  Score=56.24  Aligned_cols=108  Identities=11%  Similarity=0.047  Sum_probs=75.0

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---cccc-----ccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVP-----LRKMI  277 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~-----l~~i~  277 (351)
                      .+++++|.|   +..+++++++. ++++.|++++....+|+|+. |.++|+|+..|++...-.   ++.+     +..+ 
T Consensus       255 ~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~-  328 (408)
T TIGR03520       255 FDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI-  328 (408)
T ss_pred             CCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe-
Confidence            457788854   46899999998 99999999999999999875 889999999999875421   1111     1111 


Q ss_pred             cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccc
Q 018729          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL  319 (351)
Q Consensus       278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT  319 (351)
                      ....+.++..+++.++-+.|.-...+.-..-++|..+.|.++
T Consensus       329 ~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~  370 (408)
T TIGR03520       329 DDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLL  370 (408)
T ss_pred             CCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHH
Confidence            233466888999999999885432111112245666667643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.40  E-value=0.00035  Score=55.41  Aligned_cols=56  Identities=16%  Similarity=0.285  Sum_probs=47.2

Q ss_pred             ccccccccccCcceEEEeCC--CCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~--~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.+  ++.+++++  +++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4678899965  56677776  6777 89999999999999999875 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.39  E-value=0.00038  Score=54.82  Aligned_cols=55  Identities=16%  Similarity=0.377  Sum_probs=47.9

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.+++++|.+  ++.+++.++++. ++++.+.+++..++||.++  ++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4578999954  567899999998 9999999999999999973  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.38  E-value=0.00028  Score=55.46  Aligned_cols=56  Identities=18%  Similarity=0.397  Sum_probs=49.3

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.+++++|.+  +..+++.++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus        52 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            5679999965  567899999998 99999999999999999865 79999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.37  E-value=0.0003  Score=55.49  Aligned_cols=57  Identities=14%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.++.++|.+  ++.+++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            45678889965  568899999998 99999999999999999865 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.37  E-value=0.00028  Score=56.68  Aligned_cols=57  Identities=21%  Similarity=0.483  Sum_probs=50.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ...+++++|.+  .+.++++++++. ++++.+.+.+.+++||.+++ ++++|+++.+|++.
T Consensus        67 ~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            45678999965  568899999998 99999999999999999865 89999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.37  E-value=0.00032  Score=55.69  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=48.8

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|.+  ++.+++.++++. ++++.+.+++..++||+++  ++++|+++..|++.
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            34678899954  678899999998 9999999999999999975  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.36  E-value=0.00035  Score=55.04  Aligned_cols=55  Identities=18%  Similarity=0.339  Sum_probs=48.0

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+++++|.+  +..+++.++++. ++++.+.+++.+++||.+++ ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            358899965  567889999998 99999999999999999865 78999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.00027  Score=54.80  Aligned_cols=49  Identities=20%  Similarity=0.150  Sum_probs=44.5

Q ss_pred             ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      ++++.+++++++.++++.|.+++...++|+|++|+++|+++..|+....
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~   49 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS   49 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence            4677899999999999999989889999999999999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.0004  Score=55.99  Aligned_cols=52  Identities=29%  Similarity=0.334  Sum_probs=44.7

Q ss_pred             cccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhc
Q 018729          208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  263 (351)
Q Consensus       208 v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll  263 (351)
                      +.++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++..|+-
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            3456754  668899999998 99999999999999999876 7899999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.32  E-value=0.0008  Score=68.05  Aligned_cols=61  Identities=15%  Similarity=0.264  Sum_probs=54.9

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|+|..++++++++.++. ++++.+.+++...+||++++ ++++|+++.+|+++..
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence            3567999999877889999999998 99999999999999999876 7899999999998753

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.31  E-value=0.00037  Score=68.08  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=92.1

Q ss_pred             ccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--c--------cccccc---ccc
Q 018729          213 TPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A--------VPLRKM---IIR  279 (351)
Q Consensus       213 tpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--~--------~~l~~i---~~~  279 (351)
                      +++...+++.+..+.- ++...+.++++.|+||.+.+.+++..+++.+.++......  .        .++.++   ...
T Consensus       159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~  237 (381)
T KOG1764|consen  159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS  237 (381)
T ss_pred             ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence            4444547788888876 7888999999999999985567999999999998754321  1        122222   123


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      ....+.+++++.++++.|.+++..-.+|||++|+.+|..+..|+......
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~  287 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE  287 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence            46789999999999999999999999999999999999999999876543

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.30  E-value=0.00046  Score=54.00  Aligned_cols=56  Identities=23%  Similarity=0.421  Sum_probs=46.4

Q ss_pred             ccccccccccCcceEEEeC-CCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~-~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.++.  ..+.. ++++. ++++.+.+.+++++||++++ ++++|+++.+|++.
T Consensus        53 ~~~v~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTPEN--LLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhcccCc--eEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            457889996533  44555 89997 99999999999999999865 79999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.29  E-value=0.00046  Score=54.28  Aligned_cols=57  Identities=25%  Similarity=0.389  Sum_probs=49.4

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.+  ++.++++++++. ++++.+.+.+.+++||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4789999976  567899999998 99999999999999999762378999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.29  E-value=0.00036  Score=56.14  Aligned_cols=57  Identities=16%  Similarity=0.405  Sum_probs=49.6

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|.+  .+.+++.++++. ++++.+.+.+.+++||.+++ ++++|+|+.+|+++
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            34678889865  678999999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.28  E-value=0.0004  Score=57.42  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=49.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|++  ++..+++++++. ++++.+.+.++.++||.++  ++++|+++.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            35679999976  557899999998 9999999999999999975  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.28  E-value=0.00037  Score=56.96  Aligned_cols=55  Identities=24%  Similarity=0.434  Sum_probs=48.3

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..++.++|.+  ++..++.++++. ++++.+.+.+.+++||.++  ++++|+++.+|++.
T Consensus        77 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          77 GKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            4478899965  568899999998 9999999999999999986  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.27  E-value=0.0003  Score=71.20  Aligned_cols=61  Identities=11%  Similarity=0.225  Sum_probs=54.6

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+|+++|+|...+.++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++..
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~  221 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVK  221 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence            4678999999876688999999998 99999999999999999865 7899999999998654

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.27  E-value=0.00047  Score=54.27  Aligned_cols=56  Identities=18%  Similarity=0.450  Sum_probs=48.3

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.++.++|.+  ++.+++.++++. ++++.+.+++...+||++++  +++|+++.+|++.
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence            45678899965  567889999998 99999999999999999753  8999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.26  E-value=0.0004  Score=55.45  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=50.0

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..+.+++++|.+  .+.+++.+++++ ++++.+.+++++.+||+++  ++++|+++.+|++.
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456779999976  568899999998 9999999999999999975  78999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.25  E-value=0.00047  Score=67.45  Aligned_cols=117  Identities=12%  Similarity=0.054  Sum_probs=80.3

Q ss_pred             HHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-cccccc
Q 018729          196 IIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLR  274 (351)
Q Consensus       196 ~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-~~~~l~  274 (351)
                      ++..+-...-.+++++|.|....  ...+.+ .  +++.   ++.+...|.++      |++...+....... +...+.
T Consensus       264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~-~--~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  329 (382)
T TIGR03415       264 FVAHTNPLNVLTARSLMRPLTDL--EHVDGG-W--CVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE  329 (382)
T ss_pred             HhcccCcccceeHHHHhcccccc--cccCcc-h--hhhh---cccceeEeecc------ceecccchHhHhhcccccchh
Confidence            33433334456899999764433  222222 2  3333   77888888754      88887775442221 223466


Q ss_pred             ccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       275 ~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      + .....+.|++++++.+++....+.+.++++ +|+ |+++|+|+..+++..+.+
T Consensus       330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       330 S-LEAAPTVINPDTLMRDVLAARHRTGGAILL-VEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             h-hcccCcccCCCCcHHHHHHHHhcCCCCeEE-eeC-CeEEEEEeHHHHHHHHhc
Confidence            6 477788999999999999999988888765 476 999999999999988754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.25  E-value=0.00053  Score=54.90  Aligned_cols=57  Identities=14%  Similarity=0.338  Sum_probs=49.4

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.++.++|.  .++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus        65 ~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            4567888994  4667899999998 99999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.25  E-value=0.00032  Score=56.07  Aligned_cols=57  Identities=16%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.+.++.++|.+  +..+++.++++. ++++.+.+.+.+++||+++  ++++|+++.+|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            345678889965  568899999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.25  E-value=0.00048  Score=54.19  Aligned_cols=57  Identities=18%  Similarity=0.341  Sum_probs=49.6

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      +.+++++|.+  +...++.++++. ++++.+.+++...+||++++ ++++|+++..|++..
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4578999965  568899999998 99999999999999999875 799999999998753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.24  E-value=0.00044  Score=54.95  Aligned_cols=57  Identities=14%  Similarity=0.261  Sum_probs=46.9

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..++++|.+....+..+.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            45889997655444444499997 99999999999999999865 78999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.24  E-value=0.00061  Score=54.07  Aligned_cols=56  Identities=23%  Similarity=0.490  Sum_probs=47.8

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC-CCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~d~ivGiv~~kdll~  264 (351)
                      .+++++|.+  ++..++.++++. ++++.+.+++..++||++++ .++++|+++.+|++.
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            347788865  567899999998 99999999999999999764 268999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.22  E-value=0.00059  Score=53.29  Aligned_cols=55  Identities=31%  Similarity=0.536  Sum_probs=48.0

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..+.++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            468888965  567899999998 99999999999999999875 79999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.20  E-value=0.00038  Score=57.12  Aligned_cols=57  Identities=21%  Similarity=0.345  Sum_probs=50.0

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..+.+++++|.+  +..+++.++++. ++++.+.+.+.+++||++ + ++++|+++.+|+++
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            356789999965  568899999998 999999999999999998 4 89999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.20  E-value=0.00099  Score=52.69  Aligned_cols=53  Identities=25%  Similarity=0.510  Sum_probs=47.2

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHh-cCCcEEeeEcCCCC-ceeEEeEhhhhc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL  263 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~-~~~sr~PV~~~~~d-~ivGiv~~kdll  263 (351)
                      +++++|++  .+.++.++.++. ++.+.+.+ ++.+++||.+++ + +++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence            69999976  668899999998 99999999 799999999875 4 999999999974

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.19  E-value=0.00067  Score=53.15  Aligned_cols=57  Identities=18%  Similarity=0.333  Sum_probs=49.2

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|.+  ++..++.++++. ++++.+.+.+...+||++++ ++++|+++.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            35678899965  568899999998 89999999999999999875 78999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.18  E-value=0.00066  Score=53.40  Aligned_cols=55  Identities=22%  Similarity=0.455  Sum_probs=48.0

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.+  ++..+++++++. ++++.+.+++..++||+++  ++++|+++..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            4578888964  667899999998 9999999999999999975  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.17  E-value=0.00062  Score=53.59  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=48.7

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|.+  +...+++++++. ++++.+.+++..++||.++  ++++|+++.+|++.
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            35578899965  668899999997 9999999999999999974  78999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.17  E-value=0.00078  Score=64.25  Aligned_cols=57  Identities=19%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      +.+++++|++  +..++++++++. ++++.+.+++..++||++++ ++++|+++.+|++++
T Consensus       262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            4568999976  567899999998 99999999999999999876 689999999999864

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.16  E-value=0.00041  Score=57.55  Aligned_cols=50  Identities=14%  Similarity=-0.017  Sum_probs=45.1

Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .+..+++++++.++++.|.+++.+.++|+|+.|+++|++|..|+++.+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            45789999999999999998998899999999999999999999987653

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.16  E-value=0.00063  Score=52.79  Aligned_cols=55  Identities=20%  Similarity=0.345  Sum_probs=48.2

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.+  +..+++.++++. ++++.+.+++.+++||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~  104 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence            4568899965  568899999998 9999999999999999975  79999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.15  E-value=0.00064  Score=54.39  Aligned_cols=57  Identities=16%  Similarity=0.402  Sum_probs=49.3

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.++.++|.+  +...++.++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            35668889954  568899999998 99999999999999999875 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.15  E-value=0.00082  Score=52.46  Aligned_cols=54  Identities=15%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .++.++|.+  +..+++.++++. ++++.+.+++.+++||.+ + ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence            357888976  457899999998 999999999999999997 3 79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.15  E-value=0.00093  Score=52.31  Aligned_cols=55  Identities=25%  Similarity=0.404  Sum_probs=47.5

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .++.++|.+  ++.+++.++++. ++++.+.+++.+.+||.+++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            457788865  568899999998 99999999999999999864 78999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.00047  Score=55.30  Aligned_cols=48  Identities=15%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      ++..+++++++.++++.|.+++.+..+|+|+.|+++|++|..|++...
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~   49 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA   49 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence            567899999999999999999999999999999999999999999754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.12  E-value=0.00084  Score=64.22  Aligned_cols=58  Identities=24%  Similarity=0.401  Sum_probs=51.1

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      +.+.+|+++|++  ++.++++++++. ++++.|.+++..++||.++  ++++|+++.+|+++.
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            446789999976  668899999998 9999999999999999963  689999999999864

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.12  E-value=0.0003  Score=64.87  Aligned_cols=57  Identities=14%  Similarity=0.071  Sum_probs=53.4

Q ss_pred             cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      +.+..++|.|++..++++++++++.+.|++++..-.+|+||+.+++|+||..|+.+.
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence            456678899999999999999999999999999999999999999999999999984

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.10  E-value=0.00078  Score=52.89  Aligned_cols=56  Identities=21%  Similarity=0.413  Sum_probs=48.8

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|.+  +..+++.++++. ++++.+.+.+.+++||.+ + ++++|+++.+|++.
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678899965  567899999998 999999999999999998 4 78999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.09  E-value=0.00082  Score=52.78  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=48.0

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..+.++|..  ++..++.++++. ++++.+.+++..++||++++ ++++|+++.+|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            468889954  678899999998 99999999999999999865 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.08  E-value=0.00069  Score=55.10  Aligned_cols=51  Identities=4%  Similarity=-0.101  Sum_probs=45.7

Q ss_pred             ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +++.+++++.++.++++.|++++....+|+|+.|+++|++|..|++..+..
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~   52 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS   52 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence            567889999999999999999988899999999999999999999875543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.07  E-value=0.00055  Score=62.04  Aligned_cols=58  Identities=17%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      +.+|+|+|.+  ++++++.|..+- |+++.|..++..|+-|.+.+ |+.+|+++..|+|...
T Consensus       233 ~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~ds~-gkpvGiITrTDIL~~i  290 (294)
T COG2524         233 DAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTDSN-GKPVGIITRTDILTRI  290 (294)
T ss_pred             cccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEccC-CcEEEEEehHHHHHHh
Confidence            5789999955  889999999998 99999999999999999865 8999999999998754

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.06  E-value=0.0009  Score=43.50  Aligned_cols=45  Identities=20%  Similarity=0.491  Sum_probs=39.5

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.+++.++++. ++++.+.+++++++||++++ ++++|+++.+++..
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHH
Confidence            35678899998 99999999999999999875 78999999999864

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.00074  Score=53.27  Aligned_cols=55  Identities=22%  Similarity=0.405  Sum_probs=48.2

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|.+  +..+++.++++. ++++.+.+++.+++||.++  +.++|+++.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            4578899965  567899999998 9999999999999999985  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.02  E-value=0.0009  Score=53.59  Aligned_cols=55  Identities=25%  Similarity=0.419  Sum_probs=48.0

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+++++|.+  +...++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            458888854  678899999998 99999999999999999865 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.00  E-value=0.001  Score=52.19  Aligned_cols=55  Identities=24%  Similarity=0.446  Sum_probs=48.1

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.++.++|..  ++..+++++++. ++++.+.+++.+++||.++  ++++|+++.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3568888854  678899999998 9999999999999999975  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.94  E-value=0.0013  Score=53.33  Aligned_cols=58  Identities=19%  Similarity=0.369  Sum_probs=49.1

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcC-CCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.++++..+||.++ +.++++|+++.+|++.
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45678899965  578899999998 9999999999999999853 3478999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.93  E-value=0.001  Score=52.66  Aligned_cols=49  Identities=14%  Similarity=-0.002  Sum_probs=44.5

Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      ++++++.++++.++++.|++++.+.++|+|+.|+++|+++..|+.+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~   50 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK   50 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence            4678999999999999999999999999999999999999999987664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.89  E-value=0.0018  Score=50.75  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=47.6

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .++.++|.+  +...++.++++. ++++.+.+.+...+||.+++ ++++|+++.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            467888854  668899999998 99999999999999999875 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.86  E-value=0.0022  Score=51.81  Aligned_cols=51  Identities=18%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             cccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       210 ~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +.|.  .+..++++++++. ++++.+.+++.+++||++++ ++++|+++..|+++
T Consensus        75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            4553  3568899999998 99999999999999999876 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.84  E-value=0.0018  Score=50.86  Aligned_cols=50  Identities=12%  Similarity=0.026  Sum_probs=44.2

Q ss_pred             ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +++..++.+.++.++++.|.+.+...++|+|++|+++|++|..|+++.+.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~   50 (112)
T cd04624           1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA   50 (112)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh
Confidence            35678999999999999999888888999999899999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.84  E-value=0.0014  Score=51.34  Aligned_cols=49  Identities=14%  Similarity=0.001  Sum_probs=43.9

Q ss_pred             ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      +++..++++.++.++++.|.+++.+.++|+|+.|+++|++|..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   50 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV   50 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence            5677899999999999999988888888999999999999999998654

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.82  E-value=0.0017  Score=50.96  Aligned_cols=53  Identities=15%  Similarity=0.220  Sum_probs=44.9

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.++|.   ++.+++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|++.
T Consensus        58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            4566663   357789999998 99999999999999999875 78999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.79  E-value=0.0017  Score=67.03  Aligned_cols=59  Identities=27%  Similarity=0.363  Sum_probs=50.9

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCC-CceeEEeEhhhhcccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSVD  266 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~-d~ivGiv~~kdll~~~  266 (351)
                      +.+++|+|++  +..+++++++++ ++++.+.+++.+++||+|++. ++++|+++.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999976  567899999998 999999999999999998653 4799999999998653

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.77  E-value=0.0019  Score=53.78  Aligned_cols=56  Identities=20%  Similarity=0.423  Sum_probs=48.9

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.++.++|.+  +..+++.++++. ++++.+.+.+++++||+++  ++++|+++.+|++.
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            45678899965  568899999998 9999999999999999975  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.64  E-value=0.0033  Score=49.37  Aligned_cols=49  Identities=20%  Similarity=0.408  Sum_probs=42.9

Q ss_pred             ccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          211 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       211 iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      +|.+  +..+++.++++. ++++.+.+++..++||.+ + ++++|+++.+|+++
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~-~-~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVD-E-GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CeEEEEEEhhhhhc
Confidence            7865  567899999998 999999999999999995 3 78999999999865

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.64  E-value=0.0024  Score=63.86  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=60.3

Q ss_pred             HHHHHHHhhhcc---cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          192 DETTIIAGALEL---TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       192 ~e~~~i~~vl~l---~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ++++|.+.++.=   ...+|+++||.  ++++++.++.+= |++-.|.+++..++||.++  |+++|+++..|++....
T Consensus       197 T~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         197 TRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS  270 (610)
T ss_pred             ehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence            456788888762   24689999987  779999999996 9999999999999999975  79999999999987543

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.63  E-value=0.0026  Score=49.15  Aligned_cols=51  Identities=14%  Similarity=-0.074  Sum_probs=45.0

Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      ++..++.+.++.++++.|++++.+.++|+|+.|+++|+++..|+++.....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~   52 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG   52 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence            456789999999999999998888999999999999999999999766543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.58  E-value=0.0022  Score=59.34  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             ccccccccc-CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          272 PLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       272 ~l~~i~~~~-~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      ++.++|.++ ++.++++.++.++++.|.+.+...++|+|++|+++|++|..|+.+.+
T Consensus       156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~  212 (268)
T TIGR00393       156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL  212 (268)
T ss_pred             hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH
Confidence            566776677 88999999999999999988888999999999999999999998754

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.55  E-value=0.0025  Score=49.66  Aligned_cols=48  Identities=10%  Similarity=-0.045  Sum_probs=43.1

Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      ++.+++++.++.++++.|.+++.+.++|+|+ |+++|++|.+|+.+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~   49 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALI   49 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHh
Confidence            4577899999999999999999889999998 99999999999988654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.52  E-value=0.0027  Score=63.51  Aligned_cols=58  Identities=5%  Similarity=-0.036  Sum_probs=51.8

Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      .+++++|.+++..+++++++.++++.|.+++.+.++|+|++|+++|+||..|+.+.+.
T Consensus       335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  392 (454)
T TIGR01137       335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF  392 (454)
T ss_pred             CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            4677887788899999999999999999888888999999999999999999987654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.49  E-value=0.003  Score=50.15  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=41.8

Q ss_pred             ccCceeCCCCCHHHHHHHHhhCC-ceEEEEEecCCCcccccchhhhhccc
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGH-SHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~-~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      |+++.++++.++.++++.|++.+ .+.++|+|+ |+++|+++..|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~   49 (119)
T cd04598           1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELL   49 (119)
T ss_pred             CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHH
Confidence            46678999999999999998876 678889999 9999999999988644

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.44  E-value=0.0039  Score=62.45  Aligned_cols=59  Identities=20%  Similarity=0.387  Sum_probs=52.4

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      +.+++++|++ .++.++++++++. ++++.+.+++...+||++++ ++++|+++.+|+++..
T Consensus       142 ~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence            5679999974 4678899999998 99999999999999999876 8999999999998753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.32  E-value=0.0062  Score=47.38  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ..+.++|.+  ...+++.++++. ++++.+.+++..++||.++  ++++|+++.+|++.
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            356777854  457789999998 9999999999999999974  68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=96.29  E-value=0.0075  Score=56.94  Aligned_cols=117  Identities=12%  Similarity=0.143  Sum_probs=78.8

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc---cc------cccccc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKMI  277 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~---~~------~l~~i~  277 (351)
                      +++++|.|   ++++++++++. ++++.|.+++....||+++. |.++|+|+..|++.....+   +.      .+... 
T Consensus       134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~-  207 (292)
T PRK15094        134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL-  207 (292)
T ss_pred             CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence            46788864   34799999998 99999999999999999875 7899999999998754321   11      12221 


Q ss_pred             cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCCcccc
Q 018729          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKGEM  340 (351)
Q Consensus       278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~~~~~  340 (351)
                      ....+.|+..+++.++-+.+.-   .+ . .+      +.-|....+-...+.........+.
T Consensus       208 ~~~~~~v~G~~~l~dl~~~l~~---~l-~-~~------~~~Tl~G~i~~~l~~iP~~Gd~i~~  259 (292)
T PRK15094        208 SRHTWTVRALASIEDFNEAFGT---HF-S-DE------EVDTIGGLVMQAFGHLPARGETIDI  259 (292)
T ss_pred             CCCeEEEEeccCHHHHHHHhCC---CC-C-CC------CCccHHHHHHHHhCcCCCCCCEEEE
Confidence            2234679999999999988743   21 1 12      3445555555555555555444433

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=95.87  E-value=0.0045  Score=52.28  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=51.1

Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +.+.+|.+|++++.++.++.++++.|++++..-.+|+++ |+++|-||-.|+.+....
T Consensus        66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le  122 (187)
T COG3620          66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLE  122 (187)
T ss_pred             eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhc
Confidence            445667888999999999999999999999999999988 999999999999887644

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=94.72  E-value=0.029  Score=55.95  Aligned_cols=60  Identities=20%  Similarity=0.269  Sum_probs=52.9

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      -.+..++++|.++  +++++.+++.+ ++.+.+.+++....||++++ ++++|+++..|++...
T Consensus       193 ~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi  252 (451)
T COG2239         193 EPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI  252 (451)
T ss_pred             CcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence            4567899999774  78999999987 99999999999999999976 8999999999998653

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=94.33  E-value=0.049  Score=51.84  Aligned_cols=59  Identities=17%  Similarity=0.312  Sum_probs=51.6

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ++.+...+|+..+  +++.+.+++. .+.+.|.-.++.-+||.+++ .+++|+++.+|+++..
T Consensus       247 ~~t~ieKVMtknp--~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l  305 (432)
T COG4109         247 PSTTIEKVMTKNP--ITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL  305 (432)
T ss_pred             CCccHHHHhccCC--eeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence            4567889998744  7899999998 89999999999999999876 7999999999998754

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.31  E-value=0.038  Score=53.46  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          187 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       187 g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      |.+...+-+.+    +=....+.|+|+|+.  ++.+.+.+++ ++-+.+.++...++||++++ |+++.++...||.+.
T Consensus       156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN  226 (503)
T ss_pred             EEEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence            34444444444    345677999999988  7889999998 89999999999999999876 999999999999764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=93.32  E-value=0.093  Score=51.12  Aligned_cols=57  Identities=19%  Similarity=0.464  Sum_probs=49.1

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+.|.+  ...++++++++. +++..+.++++. +||++++ ++++|+|+..+++....
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY  358 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            457888855  567899999998 999999999999 9999876 89999999999987643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=90.53  E-value=0.46  Score=43.84  Aligned_cols=99  Identities=15%  Similarity=0.129  Sum_probs=67.3

Q ss_pred             eEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc--------c---------cccccccccc
Q 018729          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------A---------VPLRKMIIRR  280 (351)
Q Consensus       218 v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~--------~---------~~l~~i~~~~  280 (351)
                      ++.|..|.  + |++++.     +|+-|.++  |+++-+=+..+++..+.++        +         ..+.+.+...
T Consensus       189 ivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         189 IVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            45555554  4 777654     67888864  7888888888877654321        0         1112221111


Q ss_pred             C----ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          281 I----PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       281 ~----~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      .    --++......+.+..+...+...+.|+|+.|+++|.+|..|++..
T Consensus       259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            1    124555666778999999999999999999999999999998753

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=90.07  E-value=0.34  Score=47.79  Aligned_cols=58  Identities=19%  Similarity=0.281  Sum_probs=48.2

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      +..+++.|.+  +..+++.++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus       336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            3467778854  557899999998 999999987777 9999876 89999999999987654

>PRK11573 hypothetical protein; Provisional

Probab=89.72  E-value=0.88  Score=45.14  Aligned_cols=79  Identities=13%  Similarity=0.099  Sum_probs=58.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----c-c----ccccccccccCceeCCC
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----D-A----VPLRKMIIRRIPRVSED  287 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~-~----~~l~~i~~~~~~~V~~~  287 (351)
                      ++..++.+.++. ++++.+++++..-.-|+|+. |...|+|+..|++...-.    + +    .++... ....+.|+..
T Consensus       263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~  339 (413)
T PRK11573        263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT  339 (413)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence            456799999998 99999999887777788765 889999999999875321    1 1    111111 2234678899


Q ss_pred             CCHHHHHHHHh
Q 018729          288 MPLYDILNEFQ  298 (351)
Q Consensus       288 ~~l~~lL~~~~  298 (351)
                      ++++++-+.+.
T Consensus       340 ~~l~d~~~~l~  350 (413)
T PRK11573        340 ANVREINKAFN  350 (413)
T ss_pred             eEHHHHHHHhC
Confidence            99999988874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		9e-05

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 235 IMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDIL 294
           I+   HSR PVY  +  NIIG++L K+LL      A+ +R + +R    + E   L  +L
Sbjct: 33  IIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPALDIRSL-VRPAVFIPEVKRLNVLL 91
Query: 295 NEFQKGHSHIAVV 307
            EF+   +H+A+V
Sbjct: 92  REFRASRNHLAIV 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	4e-29
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	3e-28
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	7e-28
3ocm_A	173	Putative membrane protein; structural genomics, PS	7e-27
3oco_A	153	Hemolysin-like protein containing CBS domains; str	2e-25
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	4e-24
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	2e-23
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	2e-22
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	2e-21
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	3e-21
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-05
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	3e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	4e-04

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  109 bits (275), Expect = 4e-29
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 169 RAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLT 228
           + +++  +     E    G + H+E  ++     L E+T    M P S    LDL+  L 
Sbjct: 9   QEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64

Query: 229 LDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSED 287
              L  +M   HSR PV   N  +++G+I  K LLS     + + L   +++    V   
Sbjct: 65  -ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVD-LVKNCNFVPNS 122

Query: 288 MPLYDILNEFQKGHSHIAVV 307
           +   ++L  F+   S +  V
Sbjct: 123 LSGMELLEHFRTTGSQMVFV 142

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  106 bits (268), Expect = 3e-28
 Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 169 RAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLT 228
             ++   +     +A +      D    +   L+ ++   +DAM   S+   L  + ++ 
Sbjct: 5   AEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 229 LDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYRDAVPLRKMIIRRIPRVSED 287
                 ++   HSR PV   +   ++G++  K+LL  +   +   L+  I+R    V E 
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKS-ILRPAVFVPEG 118

Query: 288 MPLYDILNEFQKGHSHIAVV 307
             L  +L EF++  +H+A+V
Sbjct: 119 KSLTALLKEFREQRNHMAIV 138

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  105 bits (265), Expect = 7e-28
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
             G +   E  ++    E  EK  ++ M P +    +    +     L  +   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 245 VYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSH 303
           V   N  +I+G + +++L +     + + L + I+R I  +SE++ +   L   +K    
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEE-ILRDIIYISENLTIDKALERIRKEKLQ 119

Query: 304 IAVV 307
           +A+V
Sbjct: 120 LAIV 123

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  103 bits (259), Expect = 7e-27
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 182 EAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS 241
                     +E  +++G L L E++ +  MTP +    +++D          +    HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 242 RVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGH 301
             PV  G+   ++G+   K+L++    +    R   +R    V E + +  +++  ++  
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRN-RLRDPIIVHESIGILRLMDTLKRSR 129

Query: 302 SHIAVV 307
             + +V
Sbjct: 130 GQLVLV 135

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 99.0 bits (248), Expect = 2e-25
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 188 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYS 247
           +   ++   +  A E+ +K A D M   +    +D+D T+  D L   +   +SR PV +
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 248 -GNPTNIIGLILVKNLLS-VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
             +   IIG     +++      D   +   I+R I  V E+M + D++ E       +A
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKIST-IMRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 306 VV 307
           +V
Sbjct: 120 IV 121

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 94.8 bits (237), Expect = 4e-24
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 262
             E+T  D M P S+   LD+   L    L  I+   HSR PVY  +  NIIG++L K+L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 263 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
           L      A+ +R  ++R    + E   L  +L EF+   +H+A+V
Sbjct: 61  LRYMLEPALDIRS-LVRPAVFIPEVKRLNVLLREFRASRNHLAIV 104

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 93.3 bits (233), Expect = 2e-23
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 262
             +      MTP    F +D   T+  + L+       SR  VYS    NIIG +    L
Sbjct: 3   AQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLEL 61

Query: 263 LS--VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
                       L   ++R I  V  +  L  + ++       +A+V
Sbjct: 62  FKMQQSGSGQKQLGA-VMRPIQVVLNNTALPKVFDQMMTHRLQLALV 107

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 90.2 bits (225), Expect = 2e-22
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264
           + +  D M P ++   +D++       +  +    H R+ +Y  +  + I ++ V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 265 VDYRDAVPLRKMIIRRIPR----VSEDMPLYDILNEFQKGHSHIAVV 307
           +   +     K I+ R       V E  PL   L +FQ+    + +V
Sbjct: 60  L-MTEKKEFTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLV 105

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 87.9 bits (219), Expect = 2e-21
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264
           +   +D M P S+  S+    T   + L A++   HSR PV   +  +++G++L K+LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLP 60

Query: 265 VDYR---DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
           +  +   D+  ++K ++R    V E   L  +L EF+  H+H+A+V
Sbjct: 61  LILKADGDSDDVKK-LLRPATFVPESKRLNVLLREFRANHNHMAIV 105

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 87.1 bits (217), Expect = 3e-21
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264
           ++  +D M P S+  +L  + TL  + L+ I+   HSR PV S +  +I G+++ K+LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 265 --VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
                 +A  + K ++R    V E   +  +L EF+    H+A+V
Sbjct: 61  FMRSDAEAFSMDK-VLRTAVVVPESKRVDRMLKEFRSQRYHMAIV 104

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--------TNI 253
           +L E T    M    K   + +   L    L  +   G++ +PV   +           I
Sbjct: 10  QLLEATVGQFMIEADKVAHVQVGNNL-EHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68

Query: 254 IGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310
           +  I     +  +  D + + ++++  IPR+  + P+          +  + V   +
Sbjct: 69  MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN-NGFVCVENDE 124

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLI---- 257
           E  + T K  + P  K   +     L    L  +   G+S +PV   +   + GLI    
Sbjct: 7   EFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTM 64

Query: 258 LVKNLLSVDYRDAVPLRKMIIRRI-----PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310
           ++  +L ++  +   L  M +  +     PR+  D  L   +      H  + V   D
Sbjct: 65  MMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVN-HPFVCVENDD 121

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLI---- 257
           E  +   KD M    K   + +   L    L  ++  G+S +PV       + GLI    
Sbjct: 11  EFQQIFVKDLMISSEKVAHVQIGNGL-EHALLVLVKSGYSAIPVLDPM-YKLHGLISTAM 68

Query: 258 LVKNLLSVDYRDAVPLRKMII-----RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310
           ++  +L ++  +   L +M +     + IP +  +      L      H  I  V +D
Sbjct: 69  ILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTID-HPFICAVNED 125

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 230 DTL-NAIMTM---GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV----PLRKMIIRRI 281
            T+  AI  M      ++PV   +  +++G++  + L++           P  K + +R+
Sbjct: 402 ATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRV 461

Query: 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE 316
            R++E   L  +    +   S   ++       K 
Sbjct: 462 IRLNESEILGKLARVLEVDPS--VLILGKNPAGKV 494

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.95
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.95
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.93
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.93
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.9
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.89
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.88
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.87
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.87
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.87
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.86
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.86
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.82
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.8
4esy_A	170	CBS domain containing membrane protein; structural	99.79
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.77
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.77
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.76
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.75
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.75
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.75
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.74
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.72
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.72
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.72
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.72
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.72
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.71
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.71
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.7
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.7
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.69
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.68
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.68
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.68
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.68
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.67
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.67
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.67
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.66
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.66
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.65
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.65
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.64
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.64
3ddj_A	296	CBS domain-containing protein; structural genomics	99.64
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.63
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.61
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.59
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.58
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.58
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.56
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.56
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.54
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.54
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.54
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.54
3ddj_A	296	CBS domain-containing protein; structural genomics	99.53
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.5
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.48
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.46
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.43
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.33
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.25
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.13
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.61
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.49
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.46
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.37
4esy_A	170	CBS domain containing membrane protein; structural	98.32
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.17
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.13
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.09
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.09
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.07
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.02
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.02
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.02
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.97
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	97.95
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.95
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.95
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.94
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.94
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.93
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.93
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.93
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.92
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.92
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.92
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	97.92
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.9
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.9
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.9
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.89
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.89
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.87
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.86
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.83
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.82
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.82
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.81
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.81
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.81
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.77
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.75
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.71
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.7
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.65
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.6
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.48
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.42
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.41
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.36
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.31
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.31
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.16
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.15
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.06
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.88
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.79
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.63
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.45

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.95  E-value=1.7e-28  Score=208.45  Aligned_cols=154  Identities=19%  Similarity=0.334  Sum_probs=141.5

Q ss_pred             cccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEee
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  245 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV  245 (351)
                      .+|+|||+.+++    +++++|.++++|++++++++++++.+|+++|+|+.+++++++++++. ++++.+.+++++++||
T Consensus         2 ~~t~~el~~li~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHH----HHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHH----hHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            378999999998    46678999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             EcCCCCceeEEeEhhhhcccccc-ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhh
Q 018729          246 YSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNC  324 (351)
Q Consensus       246 ~~~~~d~ivGiv~~kdll~~~~~-~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil  324 (351)
                      ++++.++++|+++.+|++....+ .+.++.++ +++++++++++++.++++.|++++.+.++|+|++|+++|+||..|++
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~i-m~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSI-LRPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHH-CBCCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHH-cCCCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            98765699999999999886543 35678898 57899999999999999999999999999999999999999999987


Q ss_pred             c
Q 018729          325 K  325 (351)
Q Consensus       325 ~  325 (351)
                      +
T Consensus       156 e  156 (156)
T 3oi8_A          156 E  156 (156)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.95  E-value=7.7e-29  Score=214.03  Aligned_cols=165  Identities=22%  Similarity=0.375  Sum_probs=115.1

Q ss_pred             ccccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEe
Q 018729          165 VLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP  244 (351)
Q Consensus       165 ~~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~P  244 (351)
                      +.+|++||+.+++    ++.++|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.+.+++++++|
T Consensus         5 ~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p   79 (172)
T 3lhh_A            5 DNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP   79 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred             ccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence            4689999999998    46778999999999999999999999999999999999999999998 999999999999999


Q ss_pred             eEcCCCCceeEEeEhhhhccccccc-cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhh
Q 018729          245 VYSGNPTNIIGLILVKNLLSVDYRD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDN  323 (351)
Q Consensus       245 V~~~~~d~ivGiv~~kdll~~~~~~-~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Di  323 (351)
                      |++++.++++|+++.+|++....++ +.++.++| ++++++++++++.++++.|++++.+.++|+|++|+++|+||..|+
T Consensus        80 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Di  158 (172)
T 3lhh_A           80 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDM  158 (172)
T ss_dssp             EESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             EEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHH
Confidence            9987557999999999998765432 56899986 999999999999999999999999999999999999999999999


Q ss_pred             hccccCCCCCCC
Q 018729          324 CKKPRGQPEKSS  335 (351)
Q Consensus       324 l~~l~~~~~~~~  335 (351)
                      ++.+.++...+.
T Consensus       159 l~~l~~~~~de~  170 (172)
T 3lhh_A          159 MDALTGEFFQED  170 (172)
T ss_dssp             HHHHHTTCC---
T ss_pred             HHHHhCCCcccc
Confidence            999999876543

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.93  E-value=2e-26  Score=199.50  Aligned_cols=152  Identities=16%  Similarity=0.233  Sum_probs=134.5

Q ss_pred             cccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhh
Q 018729          183 AGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL  262 (351)
Q Consensus       183 ~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdl  262 (351)
                      ++++|.++++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.+.+++++++||++++.++++|+|+.+|+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            4567999999999999999999999999999999999999999998 999999999999999998765799999999999


Q ss_pred             cccccc-ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCCc
Q 018729          263 LSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQK  337 (351)
Q Consensus       263 l~~~~~-~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~~  337 (351)
                      +....+ .+.++.  +++++++|++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+.++...+...
T Consensus        92 ~~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A           92 VADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             HHHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred             HHHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcccc
Confidence            876432 345676  4799999999999999999999999999999999999999999999999999987765543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.93  E-value=1.6e-26  Score=194.02  Aligned_cols=145  Identities=19%  Similarity=0.350  Sum_probs=119.5

Q ss_pred             cCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       185 ~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      ++|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.+.+++++++||++++.++++|+++.+|++.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            46899999999999999999999999999999999999999998 99999999999999999875579999999999987


Q ss_pred             ccccc-cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          265 VDYRD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       265 ~~~~~-~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                      ...++ +.++.++| ++++++++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+.|+.
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i  147 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI  147 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence            64333 56899986 99999999999999999999999999999999999999999999999998764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.90  E-value=6.7e-25  Score=185.32  Aligned_cols=145  Identities=21%  Similarity=0.307  Sum_probs=124.6

Q ss_pred             CCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeE-cCCCCceeEEeEhhhhccccc
Q 018729          189 LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY-SGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       189 l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~-~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ++++|++++++++++++.+|+++|+|+.+++++++++++. ++++.+.+++++++||+ +++.++++|+++.+|++....
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            6778899999999999999999999998999999999998 99999999999999999 654579999999999987643


Q ss_pred             c-ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCC
Q 018729          268 R-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSS  335 (351)
Q Consensus       268 ~-~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~  335 (351)
                      . ...++.++| ++++++++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+.++...+.
T Consensus        82 ~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~de~  149 (153)
T 3oco_A           82 IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDEQ  149 (153)
T ss_dssp             HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC------
T ss_pred             cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCCcc
Confidence            2 256899986 999999999999999999999999999999999999999999999999999776543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.89  E-value=2.1e-23  Score=171.11  Aligned_cols=127  Identities=30%  Similarity=0.435  Sum_probs=114.6

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  282 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~  282 (351)
                      ..+.+|+++|+|+.+++++++++++. ++++.+.+++++++||++++.++++|+++.+|++....+++.++.++ +++++
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~-m~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSL-VRPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGG-CBCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHH-hCCCe
Confidence            46789999999999999999999998 99999999999999999875579999999999988755556688898 57899


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                      ++++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+.|+.
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999998865

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.88  E-value=9.4e-23  Score=168.80  Aligned_cols=129  Identities=26%  Similarity=0.412  Sum_probs=110.5

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc---ccccccccccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY---RDAVPLRKMIIRR  280 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~---~~~~~l~~i~~~~  280 (351)
                      ++.+|+++|+|+.+++++++++++. ++++.+.+++++++||++++.++++|+++.+|++....   ..+.++.++ +++
T Consensus         1 ~~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~-m~~   78 (136)
T 3lfr_A            1 ADLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKL-LRP   78 (136)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGT-CBC
T ss_pred             CCCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHH-cCC
Confidence            3678999999999999999999998 99999999999999999875579999999999997643   234678898 577


Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCC
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKS  334 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~  334 (351)
                      ++++++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+.++..++
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de  132 (136)
T 3lfr_A           79 ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDE  132 (136)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-------
T ss_pred             CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCc
Confidence            999999999999999999999999999999999999999999999999876654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.87  E-value=3.8e-23  Score=169.92  Aligned_cols=125  Identities=16%  Similarity=0.261  Sum_probs=111.6

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----ccccccccccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRR  280 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~~~l~~i~~~~  280 (351)
                      +.+|+++|+|+.+++++++++++. ++++.+.+++++++||++++.++++|+++.+|++....++    ..++.++ +++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~-m~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRA-ADE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHH-SBC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHh-ccC
Confidence            368999999999999999999998 9999999999999999976558999999999998765432    2457787 489


Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                      ++++++++++.++++.|++++.+.++|+||+|+++|+||..|+++.+.|+.
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i  129 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  129 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC--
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999998864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.87  E-value=5.7e-23  Score=174.75  Aligned_cols=139  Identities=16%  Similarity=0.146  Sum_probs=115.1

Q ss_pred             HHHhhhc-ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc------
Q 018729          196 IIAGALE-LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------  268 (351)
Q Consensus       196 ~i~~vl~-l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~------  268 (351)
                      |+.+.|+ |-..+++++|+|+.+++++++++|++ ++++.+.+++++++||++++ ++++|+++.+|++.....      
T Consensus         4 mi~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~   81 (156)
T 3k6e_A            4 MIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQE   81 (156)
T ss_dssp             HHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHH
T ss_pred             hHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccc
Confidence            5555553 55678999999999999999999998 99999999999999999865 899999999999765321      


Q ss_pred             --ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCCcc
Q 018729          269 --DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKG  338 (351)
Q Consensus       269 --~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~~~  338 (351)
                        .+.++.++|.++++++++++++.++++.|++++  +++|||++|+++|+||..|+++++.+...+..+++
T Consensus        82 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~~~~~e~  151 (156)
T 3k6e_A           82 IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHDFSKEY  151 (156)
T ss_dssp             HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSCC-----
T ss_pred             cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhcccchhh
Confidence              245788888889999999999999999998764  58999999999999999999999876555444433

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.87  E-value=5.1e-22  Score=176.47  Aligned_cols=148  Identities=9%  Similarity=0.083  Sum_probs=130.4

Q ss_pred             ccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhc---CCcEE
Q 018729          167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM---GHSRV  243 (351)
Q Consensus       167 ~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~---~~sr~  243 (351)
                      +.+++.+.++.          .++++|+++++++++|.+.+|+++|+|  +++++++++|+. ++++.+.++   +++.+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            34555555554          378999999999999999999999987  779999999998 999999987   78999


Q ss_pred             eeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhh
Q 018729          244 PVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDN  323 (351)
Q Consensus       244 PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Di  323 (351)
                      ||++++ ++++|+|+.+|++...  .+.++.++|.+++++|++++++.++++.|++++.+.++|||++|+++|+||..|+
T Consensus        92 ~Vvd~~-~~lvGivt~~dll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Di  168 (205)
T 3kxr_A           92 FIVDEA-DKYLGTVRRYDIFKHE--PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAA  168 (205)
T ss_dssp             EEECTT-CBEEEEEEHHHHTTSC--TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHH
T ss_pred             EEEcCC-CeEEEEEEHHHHHhCC--CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence            999875 8999999999998753  3457899977889999999999999999999999999999999999999999999


Q ss_pred             hccccCC
Q 018729          324 CKKPRGQ  330 (351)
Q Consensus       324 l~~l~~~  330 (351)
                      ++.+..+
T Consensus       169 l~~i~~e  175 (205)
T 3kxr_A          169 TALVREH  175 (205)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9876544

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.86  E-value=9.8e-23  Score=167.15  Aligned_cols=127  Identities=20%  Similarity=0.278  Sum_probs=111.5

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccc
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIR  279 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~  279 (351)
                      +|++.+|+++|+|+.+++++++++++. ++++.+.+++++++||++++.++++|+++.+|++....+  .+.++.++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            477899999999999999999999998 999999999999999998755899999999999876433  246788884 8


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      ++.++++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+.|+
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ge  130 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVGE  130 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHTC
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcCC
Confidence            899999999999999999999999999999999999999999999998764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.86  E-value=5.2e-22  Score=162.15  Aligned_cols=125  Identities=26%  Similarity=0.421  Sum_probs=109.8

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--ccccccccccccC
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRI  281 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~  281 (351)
                      ++.+|+++|+|+.+++++++++++. ++++.+.+++++++||++++.++++|+++.+|++....+  .+.++.++ ++++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~-m~~~   78 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRTA   78 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHH-CBCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHH-cCCC
Confidence            3678999999988899999999998 999999999999999998755799999999999876432  34678888 5788


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      .++++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+.|+
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ge  127 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE  127 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC---
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999998764

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.82  E-value=1.8e-20  Score=173.93  Aligned_cols=142  Identities=11%  Similarity=0.103  Sum_probs=124.2

Q ss_pred             CCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhc-----CCcEEeeEcCCCCceeEEeEhhh
Q 018729          187 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM-----GHSRVPVYSGNPTNIIGLILVKN  261 (351)
Q Consensus       187 g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~-----~~sr~PV~~~~~d~ivGiv~~kd  261 (351)
                      |.+++.++..+.+++.+.+.+|+++|+|  +++++++++++. ++++.+.++     +++++||++++ ++++|+|+.+|
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~d  191 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRD  191 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHH
Confidence            4678899999999999999999999987  779999999998 999999987     78999999876 89999999999


Q ss_pred             hccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCC
Q 018729          262 LLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKS  334 (351)
Q Consensus       262 ll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~  334 (351)
                      ++...  .+.++.++|.+++++|++++++.++++.|++++.+.++|||++|+++|+||..|+++.+.++....
T Consensus       192 ll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~~ed  262 (278)
T 2yvy_A          192 LIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATED  262 (278)
T ss_dssp             HHHSC--TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC-------
T ss_pred             HhcCC--CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHhHHH
Confidence            98653  346789987789999999999999999999999999999999999999999999999998776544

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.80  E-value=9.7e-20  Score=181.11  Aligned_cols=154  Identities=12%  Similarity=0.097  Sum_probs=136.4

Q ss_pred             cccHHHHHHHHHhcccccccC---------CCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHH
Q 018729          166 LLRRAELKTFVNFHGNEAGKG---------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM  236 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~---------g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~  236 (351)
                      .+++||+..+++.    ..++         +.++++|++++++++++++.+|+++|+|  ++++++++++++ ++++.+.
T Consensus       110 ~l~~dd~~~ll~~----l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQA----VRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHH----HHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHh----CCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            4677888888873    3344         7899999999999999999999999987  789999999998 9999999


Q ss_pred             hc-----CCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecC
Q 018729          237 TM-----GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL  311 (351)
Q Consensus       237 ~~-----~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~  311 (351)
                      ++     +++++||++++ ++++|+++.+|++...  .+.+++++|.+++++|++++++.++++.|++++.+.++|||++
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~--~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~  259 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE  259 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC--TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC--CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC
Confidence            86     47999999876 8999999999998643  3468999977899999999999999999999999999999999


Q ss_pred             CCcccccchhhhhccccC
Q 018729          312 NEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       312 g~~~GiVT~~Dil~~l~~  329 (351)
                      |+++|+||.+|+++.+.+
T Consensus       260 g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          260 GRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             SBEEEEEEHHHHHHHHHH
T ss_pred             CEEEEEEehHhhHHHHHH
Confidence            999999999999987643

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.79  E-value=3.9e-19  Score=152.53  Aligned_cols=134  Identities=15%  Similarity=0.165  Sum_probs=113.5

Q ss_pred             HHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---
Q 018729          192 DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---  268 (351)
Q Consensus       192 ~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---  268 (351)
                      .+++.+.+.  +++.+|+|+|++  +++++++++++. ++++.+.+++++.+||++++ |+++|+++.+|+++....   
T Consensus         6 ~~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~   79 (170)
T 4esy_A            6 ARRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI   79 (170)
T ss_dssp             HHHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH
T ss_pred             HHHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc
Confidence            334455554  468899999986  779999999998 99999999999999999876 899999999999864321   


Q ss_pred             -----------------------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc
Q 018729          269 -----------------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK  325 (351)
Q Consensus       269 -----------------------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~  325 (351)
                                             ...++.++|.++++++++++++.++++.|.+++.+.++|+|+ |+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGivt~~Dil~  158 (170)
T 4esy_A           80 YEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD-GVPVGIVTRRDLLK  158 (170)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHTT
T ss_pred             cchhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHHH
Confidence                                   124677888889999999999999999999999999999985 99999999999999


Q ss_pred             cccCCCC
Q 018729          326 KPRGQPE  332 (351)
Q Consensus       326 ~l~~~~~  332 (351)
                      .+..+..
T Consensus       159 ~l~~~~~  165 (170)
T 4esy_A          159 LLLLEES  165 (170)
T ss_dssp             TSCCC--
T ss_pred             HHHhccC
Confidence            9877643

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.77  E-value=5.1e-19  Score=149.08  Aligned_cols=136  Identities=18%  Similarity=0.168  Sum_probs=111.5

Q ss_pred             HHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--------
Q 018729          197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------  268 (351)
Q Consensus       197 i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--------  268 (351)
                      .++...+.+.+|+++|+|+.++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++.....        
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   79 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFER   79 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGG
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHH
Confidence            34556678899999999877888999999998 99999999999999999875 899999999999865432        


Q ss_pred             -ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCC
Q 018729          269 -DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQ  336 (351)
Q Consensus       269 -~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~  336 (351)
                       ...++.++|.++++++++++++.++++.|.+++.  ++|+|++|+++|+||..|+++.+.+.......
T Consensus        80 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~~~~~  146 (157)
T 2emq_A           80 LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHRPNG  146 (157)
T ss_dssp             GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTCCC--
T ss_pred             hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhhcccc
Confidence             2457888877889999999999999999999976  88999999999999999999988776554433

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.76  E-value=8.4e-19  Score=146.35  Aligned_cols=127  Identities=13%  Similarity=0.076  Sum_probs=110.3

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc----------------
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----------------  267 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~----------------  267 (351)
                      +..+|+++|+|+.+++++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4578999999988889999999998 99999999999999999876 79999999999986421                


Q ss_pred             -cccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCC
Q 018729          268 -RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE  332 (351)
Q Consensus       268 -~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~  332 (351)
                       ....++.++|.++++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.....
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~  146 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR  146 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC---
T ss_pred             HhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence             12357888877778899999999999999999999999999999999999999999998876544

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.75  E-value=4.3e-19  Score=148.51  Aligned_cols=128  Identities=15%  Similarity=0.100  Sum_probs=111.7

Q ss_pred             hcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---------ccc
Q 018729          201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAV  271 (351)
Q Consensus       201 l~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------~~~  271 (351)
                      -.|.+++|+++|+|..++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++.....         ...
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~   87 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEM   87 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGC
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcC
Confidence            3467899999999987889999999998 99999999999999999875 899999999999865421         245


Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCC
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE  332 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~  332 (351)
                      ++.++|.+++.++++++++.++++.|.+++.  .+|+|++|+++|+||..|+++.+....+
T Consensus        88 ~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A           88 KVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             BGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             CHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence            7888877888999999999999999998875  8899999999999999999998876544

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.75  E-value=1.6e-18  Score=161.52  Aligned_cols=136  Identities=16%  Similarity=0.125  Sum_probs=123.7

Q ss_pred             CCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhc-----CCcEEeeEcCCCCceeEEeEhhhh
Q 018729          188 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM-----GHSRVPVYSGNPTNIIGLILVKNL  262 (351)
Q Consensus       188 ~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~-----~~sr~PV~~~~~d~ivGiv~~kdl  262 (351)
                      .++.+++..+++++.+.+.+|+++|+|  ++++++.++++. ++++.+.++     +++++||++++ ++++|+|+.+|+
T Consensus       119 ~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dl  194 (286)
T 2oux_A          119 LLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDL  194 (286)
T ss_dssp             TSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHH
T ss_pred             cCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHH
Confidence            578888999999999999999999987  678999999998 999999987     88999999875 899999999999


Q ss_pred             ccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          263 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       263 l~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +...  .+.++.++|.+++++|++++++.++++.|++++.+.++|||++|+++|+||..|+++.+..
T Consensus       195 l~~~--~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          195 IVND--DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TTSC--TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HcCC--CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            8753  3457889877889999999999999999999999999999999999999999999987654

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.75  E-value=1e-18  Score=165.34  Aligned_cols=140  Identities=11%  Similarity=0.069  Sum_probs=120.0

Q ss_pred             CCCHHHHHHHHhhhcccc-cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          188 DLTHDETTIIAGALELTE-KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       188 ~l~~~e~~~i~~vl~l~~-~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .++++|+++++++++|-+ .+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.|+++|+++.+|++...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            456789999999999655 99999999999999999999998 9999999999999999998768999999999998643


Q ss_pred             c--------cc------cccccc-------cccccC--ceeCCCCCHHHHHHHHhhCCceEEEEEecCCC-----ccccc
Q 018729          267 Y--------RD------AVPLRK-------MIIRRI--PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE-----KKEGE  318 (351)
Q Consensus       267 ~--------~~------~~~l~~-------i~~~~~--~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~-----~~GiV  318 (351)
                      .        ..      +.++..       +|.+++  .++++++++.++++.|++++.+.++|+|++|+     ++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Giv  161 (334)
T 2qrd_G           82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVL  161 (334)
T ss_dssp             HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEE
T ss_pred             HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEe
Confidence            1        11      122222       245677  89999999999999999999999999999876     99999


Q ss_pred             chhhhhcccc
Q 018729          319 LFKDNCKKPR  328 (351)
Q Consensus       319 T~~Dil~~l~  328 (351)
                      |..|+++.+.
T Consensus       162 t~~dl~~~~~  171 (334)
T 2qrd_G          162 TQYRILKFIS  171 (334)
T ss_dssp             EHHHHHHHHH
T ss_pred             eHHHHHHHHH
Confidence            9999998664

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.75  E-value=9.3e-19  Score=141.06  Aligned_cols=120  Identities=12%  Similarity=0.184  Sum_probs=108.1

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~  285 (351)
                      ++|+++|+|  ++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|++....++..++.++|.+++.+++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            468999987  668899999998 99999999999999999865 89999999999987655555689998778889999


Q ss_pred             CCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          286 EDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       286 ~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.+
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            99999999999999999999999999999999999999998765

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=1.7e-18  Score=147.67  Aligned_cols=135  Identities=10%  Similarity=0.106  Sum_probs=115.2

Q ss_pred             hhhcccccccccccccC-cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----cccc
Q 018729          199 GALELTEKTAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVP  272 (351)
Q Consensus       199 ~vl~l~~~~v~~iMtpr-~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~  272 (351)
                      ....+..++|+++|+|+ .++.++++++++. ++++.+.+++++.+||++++ ++++|+|+.+|+++....     ...+
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   94 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQS   94 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTSB
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccCC
Confidence            45567889999999985 5678999999998 99999999999999999865 899999999999865322     2467


Q ss_pred             ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCC
Q 018729          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQ  336 (351)
Q Consensus       273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~  336 (351)
                      +.++|.++++++++++++.++++.|.+++.+.++|+|+ |+++|+||..|+++.+..+......
T Consensus        95 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~~~~~~  157 (165)
T 3fhm_A           95 VSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEIEAEAE  157 (165)
T ss_dssp             GGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC------
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHHHHHH
Confidence            88987788999999999999999999999999999999 9999999999999999887665444

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.73  E-value=8.8e-18  Score=138.37  Aligned_cols=128  Identities=13%  Similarity=0.212  Sum_probs=111.4

Q ss_pred             hcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc-cccc---cccccccc
Q 018729          201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYR---DAVPLRKM  276 (351)
Q Consensus       201 l~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~-~~~~---~~~~l~~i  276 (351)
                      +.|.+.+|+++|++  ++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|++. ...+   ...++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999985  678899999998 99999999999999999865 89999999999973 3221   24678898


Q ss_pred             ccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCC
Q 018729          277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEK  333 (351)
Q Consensus       277 ~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~  333 (351)
                      |.++++++++++++.++++.|.+++.+.+ |+|++|+++|+||..|+++.+.+..+.
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~  133 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLET  133 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCC
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHh
Confidence            77889999999999999999999999988 999999999999999999998776543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=4e-18  Score=139.52  Aligned_cols=125  Identities=17%  Similarity=0.180  Sum_probs=109.4

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIR  279 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~  279 (351)
                      +++.+|+++|+|  ++.++++++++. ++++.+.+++++++||++ + ++++|+++.+|++....+   .+.++.++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999987  568899999998 999999999999999998 4 799999999999765332   24578888768


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCC
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE  332 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~  332 (351)
                      ++.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+....+
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~  128 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFE  128 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC-
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999988765443

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.72  E-value=1.5e-18  Score=163.99  Aligned_cols=143  Identities=12%  Similarity=0.184  Sum_probs=115.8

Q ss_pred             cccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhh
Q 018729          183 AGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL  262 (351)
Q Consensus       183 ~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdl  262 (351)
                      ++++|.+.+.+++.+++.  |.+.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+++.+|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dl   90 (330)
T 2v8q_E           14 NEHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF   90 (330)
T ss_dssp             ---------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHH
T ss_pred             ChHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHH
Confidence            345677777777778777  46889999999999999999999998 999999999999999999876899999999998


Q ss_pred             ccccccc------------ccc-------ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEec-CCCcccccchhh
Q 018729          263 LSVDYRD------------AVP-------LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD-LNEKKEGELFKD  322 (351)
Q Consensus       263 l~~~~~~------------~~~-------l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe-~g~~~GiVT~~D  322 (351)
                      +......            ..+       +.++|.++++++++++++.++++.|++++.+.++|+|+ +|+++|+||..|
T Consensus        91 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~d  170 (330)
T 2v8q_E           91 INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKR  170 (330)
T ss_dssp             HHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHH
T ss_pred             HHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHH
Confidence            7642110            111       23455688899999999999999999999999999998 999999999999


Q ss_pred             hhcccc
Q 018729          323 NCKKPR  328 (351)
Q Consensus       323 il~~l~  328 (351)
                      +++.+.
T Consensus       171 l~~~~~  176 (330)
T 2v8q_E          171 ILKFLK  176 (330)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.72  E-value=6.4e-18  Score=137.77  Aligned_cols=121  Identities=12%  Similarity=0.087  Sum_probs=107.9

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccc---cccccccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRR  280 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~---~~l~~i~~~~  280 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.+++++.+||+++  ++++|+++.+|+++...++.   .++.++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            46799999987  567899999998 9999999999999999986  89999999999987654322   5688987788


Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +.++++++++.++++.|.+++.+..+|+|++|+++|+||..|+++.+..
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999987753

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.72  E-value=5.1e-18  Score=142.11  Aligned_cols=118  Identities=20%  Similarity=0.155  Sum_probs=105.7

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  281 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~  281 (351)
                      ++|+++|+|+.++.++++++++. ++++.+.+++++.+||++++ ++++|+|+.+|++....+    .+.++.++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999877889999999998 99999999999999999866 899999999999875432    2457888877888


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      .++++++++.++++.|.+++.+.++|+|+. +++|+||..|++++
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~a  149 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLRA  149 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTCC
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhcC
Confidence            999999999999999999999999999985 99999999999863

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.72  E-value=2.6e-18  Score=145.37  Aligned_cols=133  Identities=17%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---------cccc
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVP  272 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------~~~~  272 (351)
                      .+.+.+|+++|+|+.++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++.....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            567899999999877889999999998 99999999999999999875 799999999999865322         2457


Q ss_pred             ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCCcc
Q 018729          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKG  338 (351)
Q Consensus       273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~~~  338 (351)
                      +.++|.+++.++++++++.++++.|.+++.  ++|+|++|+++|+||..|+++.+.+........+
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~~~~~~  151 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSLNKEG  151 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-------
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHhhcccc
Confidence            888877788999999999999999998865  8899999999999999999998876655444433

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.72  E-value=4.9e-18  Score=146.01  Aligned_cols=123  Identities=15%  Similarity=0.106  Sum_probs=109.0

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc------------------
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD------------------  266 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~------------------  266 (351)
                      ..+|+++|+|+.+++++++++++. ++++.+.+++++++||++++ ++++|+++.+|++...                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            468999999988889999999998 99999999999999999876 8999999999998531                  


Q ss_pred             -------------ccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          267 -------------YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       267 -------------~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                                   ...+.++.++|.++++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                         012356888877778999999999999999999999999999999999999999999988754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.71  E-value=1.7e-17  Score=137.36  Aligned_cols=118  Identities=12%  Similarity=0.112  Sum_probs=105.4

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCC--ceeEEeEhhhhcccccc---cccccccccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT--NIIGLILVKNLLSVDYR---DAVPLRKMIIRR  280 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d--~ivGiv~~kdll~~~~~---~~~~l~~i~~~~  280 (351)
                      .+|+++|++  ++.++++++++. ++++.+.+++++++||++++ +  +++|+++.+|++....+   .+.++.++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCC
Confidence            689999986  678999999998 99999999999999999875 5  89999999999875322   246788987788


Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +++++++ ++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence            9999999 9999999999999999999999999999999999998754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.71  E-value=9.5e-18  Score=137.79  Aligned_cols=122  Identities=10%  Similarity=0.107  Sum_probs=106.8

Q ss_pred             cc-ccccccccC-cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc-cccc----ccccccccc
Q 018729          205 EK-TAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYR----DAVPLRKMI  277 (351)
Q Consensus       205 ~~-~v~~iMtpr-~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~-~~~~----~~~~l~~i~  277 (351)
                      ++ +|+++|+|+ .++.++++++++. ++++.+.+++++++||++ + ++++|+++.+|++. ...+    .+.++.++|
T Consensus         4 ~m~~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (135)
T 2rc3_A            4 HMKTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIM   80 (135)
T ss_dssp             -CCBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTS
T ss_pred             cceeHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhc
Confidence            34 899999976 7889999999998 999999999999999997 4 79999999999985 2221    246788987


Q ss_pred             cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      .+++.++++++++.++++.|.+++.+.++|+| +|+++|+||..|+++.+.++
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           81 TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             cCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence            78899999999999999999999999999999 69999999999999988654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.70  E-value=1.7e-17  Score=136.55  Aligned_cols=123  Identities=12%  Similarity=0.186  Sum_probs=107.3

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhh-cccccc---cccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL-LSVDYR---DAVPLRKMII  278 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdl-l~~~~~---~~~~l~~i~~  278 (351)
                      +.+.+|+++|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|+ +....+   .+.++.++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            567899999976  668899999998 99999999999999999875 899999999999 764322   2457888877


Q ss_pred             ccCceeCCCCCHHHHHHHHhhCC-----ceEEEEEecCCCcccccchhhhhccccC
Q 018729          279 RRIPRVSEDMPLYDILNEFQKGH-----SHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       279 ~~~~~V~~~~~l~~lL~~~~~~~-----~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +++.++++++++.++++.|.+++     .+.++|+|++|+++|++|..|+++.+.+
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            78899999999999999999999     9999999999999999999999987654

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.70  E-value=4.1e-18  Score=160.39  Aligned_cols=143  Identities=12%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             cCCCCCHHHHHHHHhhhcc-cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhc
Q 018729          185 KGGDLTHDETTIIAGALEL-TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  263 (351)
Q Consensus       185 ~~g~l~~~e~~~i~~vl~l-~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll  263 (351)
                      +.|.++++|+++++++++| .+.+++|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            4567889999999999999 9999999999999999999999998 9999999999999999998767999999999987


Q ss_pred             cccc----cc----------ccccccc------ccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCC-----ccccc
Q 018729          264 SVDY----RD----------AVPLRKM------IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE-----KKEGE  318 (351)
Q Consensus       264 ~~~~----~~----------~~~l~~i------~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~-----~~GiV  318 (351)
                      ....    ..          ...+.++      +.+++.++++++++.++++.|.+++.+.++|+|++|+     ++|++
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Giv  166 (323)
T 3t4n_C           87 NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVL  166 (323)
T ss_dssp             HHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEE
T ss_pred             HHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEe
Confidence            6421    00          0112222      2477889999999999999999999999999999887     99999


Q ss_pred             chhhhhcccc
Q 018729          319 LFKDNCKKPR  328 (351)
Q Consensus       319 T~~Dil~~l~  328 (351)
                      |..|+++.+.
T Consensus       167 t~~di~~~l~  176 (323)
T 3t4n_C          167 TQYRILKFVA  176 (323)
T ss_dssp             EHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999997654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.69  E-value=4.6e-17  Score=141.28  Aligned_cols=120  Identities=17%  Similarity=0.197  Sum_probs=107.7

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-----ccccccccccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRR  280 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-----~~~~~l~~i~~~~  280 (351)
                      .+|+++|++  ++++++.++++. ++++.+.+++++++||++++ ++++|+++.+|++....     ....++.++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            789999975  678999999998 99999999999999999865 89999999999987532     1245788887778


Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.+
T Consensus        85 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           85 IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             CcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999998765

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.68  E-value=3e-17  Score=138.39  Aligned_cols=128  Identities=9%  Similarity=0.077  Sum_probs=111.4

Q ss_pred             cccccccccC----cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----cccccccc
Q 018729          206 KTAKDAMTPI----SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKM  276 (351)
Q Consensus       206 ~~v~~iMtpr----~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i  276 (351)
                      .+|+|+|+|+    .++.++++++++. ++++.+.+++++++||.+  .++++|+++.+|++.....     .+.++.++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999988    7889999999998 999999999999999954  3899999999999865321     24678888


Q ss_pred             ccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCCCCCc
Q 018729          277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQK  337 (351)
Q Consensus       277 ~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~~~~~  337 (351)
                      |.+++.++++++++.++++.|.+++.+.++|+| +|+++|+||..|+++.+.++......+
T Consensus        84 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~~~~~  143 (157)
T 4fry_A           84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQFTISQ  143 (157)
T ss_dssp             SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCCCCC-
T ss_pred             cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHhhHHH
Confidence            778889999999999999999999999999999 699999999999999998776655443

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.68  E-value=2e-17  Score=170.02  Aligned_cols=126  Identities=16%  Similarity=0.001  Sum_probs=108.7

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHH-hcCCcEEeeEcCCCCceeEEeEhhhhccccccc----c--------
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM-TMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------  270 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~-~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----~--------  270 (351)
                      ++++|+|+|+||+++.+++++++++ |+.+.+. +++++++||+|++ ++++|+|+.+|+++...+.    +        
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999999999999999998 9999999 8999999999875 8999999999998753221    0        


Q ss_pred             ---------------------------------------ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecC
Q 018729          271 ---------------------------------------VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL  311 (351)
Q Consensus       271 ---------------------------------------~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~  311 (351)
                                                             .++.++|.+++.+|++++++.++++.|++++.+.++|+ |+
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~  607 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence                                                   02567788899999999999999999999999999999 78


Q ss_pred             CCcccccchhhhhccccCCCC
Q 018729          312 NEKKEGELFKDNCKKPRGQPE  332 (351)
Q Consensus       312 g~~~GiVT~~Dil~~l~~~~~  332 (351)
                      |+++|+||++|+++.+..+.+
T Consensus       608 G~lvGIVT~~Dll~~~~~~~~  628 (632)
T 3org_A          608 GKLVGIVEREDVAYGYSNSLE  628 (632)
T ss_dssp             TEEEEEEEGGGTEECCCC---
T ss_pred             CEEEEEEehhhHHHHHhhhHH
Confidence            999999999999998876543

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.68  E-value=3e-17  Score=134.26  Aligned_cols=123  Identities=13%  Similarity=0.148  Sum_probs=105.0

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhc-ccccc----ccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL-SVDYR----DAVPLRKMI  277 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll-~~~~~----~~~~l~~i~  277 (351)
                      +.-.+|+++|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++ .....    .+.++.++|
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA   80 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHh
Confidence            344689999986  668899999998 99999999999999999765 8999999999998 34322    235788887


Q ss_pred             cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      .++++++++++++.++++.|.+++.+.++|+|+ |+++|++|..|+++.+.++
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~~  132 (133)
T 1y5h_A           81 RDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPEH  132 (133)
T ss_dssp             TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC--
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence            788999999999999999999999999999998 9999999999999988654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.68  E-value=4.9e-17  Score=137.71  Aligned_cols=122  Identities=16%  Similarity=0.184  Sum_probs=107.2

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc----ccccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMII  278 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~----~~~~~l~~i~~  278 (351)
                      +.+++|+++|++  . +++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....    ....++.++|.
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            457899999985  3 4899999998 99999999999999999865 89999999999987531    12467889866


Q ss_pred             c--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCC---CcccccchhhhhccccC
Q 018729          279 R--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN---EKKEGELFKDNCKKPRG  329 (351)
Q Consensus       279 ~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g---~~~GiVT~~Dil~~l~~  329 (351)
                      +  ++.++++++++.++++.|.+++.+.++|+|++|   +++|+||..|+++.+..
T Consensus        89 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           89 RMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            6  788999999999999999999999999999988   99999999999987654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.67  E-value=4.6e-17  Score=131.45  Aligned_cols=118  Identities=15%  Similarity=0.159  Sum_probs=103.9

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  281 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~  281 (351)
                      ++|+++|++  ++.++++++++. ++++.+.+++++++||++ + ++++|+++.+|++....+    .+.++.++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            468999986  678899999998 999999999999999998 4 899999999999865322    2457888877889


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .++++++++.++++.|.+++.+.++|+|+ |+++|++|..|+++.+.+
T Consensus        76 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           76 VTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             GEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             eEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999999 999999999999998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.67  E-value=2.8e-17  Score=163.95  Aligned_cols=150  Identities=16%  Similarity=0.194  Sum_probs=113.7

Q ss_pred             ccccHHHHHHHHHhcccccccCCCC-----CHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729          165 VLLRRAELKTFVNFHGNEAGKGGDL-----THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (351)
Q Consensus       165 ~~~t~eEl~~lv~~~~~e~~~~g~l-----~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~  239 (351)
                      ..+|++|+...+...    +.-|.|     .++|+++++++     ++++++|++  +++++++++++. ++++.+.+++
T Consensus        52 dtVTe~~ma~a~a~~----GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQE----GGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHH----TCEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHc----CCcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcC
Confidence            357899998887632    223445     66788999998     456889985  678999999998 9999999999


Q ss_pred             CcEEeeEcCCCCceeEEeEhhhhcccccccccccccccc-c-cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccc
Q 018729          240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-R-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEG  317 (351)
Q Consensus       240 ~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~-~-~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~Gi  317 (351)
                      |+++||++++ ++++|+|+.+|+... .+.+.++.++|. + +++++++++++.++++.|++++.+.++||||+|+++|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rDL~~~-~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~Gi  197 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRDVRFV-TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGM  197 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHHHTTC-CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEE
T ss_pred             CcEEEEEccC-CEEEEEEEHHHHhhc-ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEe
Confidence            9999999875 899999999999743 234568899854 3 68999999999999999999999999999999999999


Q ss_pred             cchhhhhcccc
Q 018729          318 ELFKDNCKKPR  328 (351)
Q Consensus       318 VT~~Dil~~l~  328 (351)
                      ||++|+++...
T Consensus       198 IT~~DIl~~~~  208 (496)
T 4fxs_A          198 ITAKDFHKAES  208 (496)
T ss_dssp             ECCC-----CC
T ss_pred             ehHhHHHHhhc
Confidence            99999998754

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=5.1e-17  Score=137.21  Aligned_cols=124  Identities=18%  Similarity=0.134  Sum_probs=108.2

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcE-EeeEcCCCCceeEEeEhhhhccccc-------------
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSR-VPVYSGNPTNIIGLILVKNLLSVDY-------------  267 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr-~PV~~~~~d~ivGiv~~kdll~~~~-------------  267 (351)
                      .+.+.+|+++|++  ++.++++++++. ++++.+.++++++ +||++++  +++|+++.+|++....             
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            3567889999976  678999999998 9999999999999 9999864  8999999999986421             


Q ss_pred             ------cccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          268 ------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       268 ------~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                            ..+.++.++|.+ ++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.+..
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence                  124578888666 889999999999999999999999999999999999999999999876543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.66  E-value=4.5e-17  Score=134.70  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=104.9

Q ss_pred             cccccccc---ccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----cccccc
Q 018729          203 LTEKTAKD---AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLR  274 (351)
Q Consensus       203 l~~~~v~~---iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~  274 (351)
                      +-+.++++   +|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++.....     .+.++.
T Consensus         5 ~~~~~v~~~~~~~~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~   80 (144)
T 2nyc_A            5 FLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG   80 (144)
T ss_dssp             GGGSBGGGSSCCBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHH
T ss_pred             hhhcchhhcCCCCCC--CceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHH
Confidence            45678888   7764  678899999998 99999999999999999875 899999999999865432     135677


Q ss_pred             ccccc------cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          275 KMIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       275 ~i~~~------~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      ++|.+      ++.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.+
T Consensus        81 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           81 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            87555      67899999999999999999999999999999999999999999998754

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.66  E-value=4.3e-17  Score=140.80  Aligned_cols=127  Identities=18%  Similarity=0.157  Sum_probs=108.8

Q ss_pred             cccccccccccCcc--eEEE--eCCCCccHHHHHHHHhcCCcEEeeEc-CCCCceeEEeEhhhhccccc-----------
Q 018729          204 TEKTAKDAMTPISK--AFSL--DLDATLTLDTLNAIMTMGHSRVPVYS-GNPTNIIGLILVKNLLSVDY-----------  267 (351)
Q Consensus       204 ~~~~v~~iMtpr~~--v~~v--~~~~t~~~e~~~~~~~~~~sr~PV~~-~~~d~ivGiv~~kdll~~~~-----------  267 (351)
                      .+.+|+++|+|..+  ++++  ++++++. ++++.+.+++++++||++ ++.++++|+|+.+|++....           
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            57899999998744  6777  9999998 999999999999999993 23489999999999986532           


Q ss_pred             -----------------cccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          268 -----------------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       268 -----------------~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                                       ....++.++|.++++++++++++.++++.|.+++.+.++|+| +|+++|+||..|+++.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A           88 TSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             TCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence                             123568888768899999999999999999999999999999 79999999999999988654


Q ss_pred             CC
Q 018729          331 PE  332 (351)
Q Consensus       331 ~~  332 (351)
                      ..
T Consensus       167 ~~  168 (185)
T 2j9l_A          167 AN  168 (185)
T ss_dssp             CC
T ss_pred             hc
Confidence            43

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.65  E-value=9.3e-17  Score=136.21  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=106.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc------------cccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY------------RDAV  271 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~------------~~~~  271 (351)
                      ...+|+++|++  +++++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            45789999987  668899999998 99999999999999999865 89999999999986432            1245


Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      ++.++|.++++++++++++.++++.|.+++.+.++|+|+ |+++|+||..|+++.+..
T Consensus        79 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            788887778889999999999999999999999999998 999999999999987654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.64  E-value=9.3e-17  Score=135.85  Aligned_cols=130  Identities=11%  Similarity=0.114  Sum_probs=106.3

Q ss_pred             HHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcC-CCCceeEEeEhhhhccccccc------
Q 018729          197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYRD------  269 (351)
Q Consensus       197 i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~d~ivGiv~~kdll~~~~~~------  269 (351)
                      ..+.+.+.+.+|+++|++  ++++++.++++. ++++.+.+++++.+||+++ +.++++|+++.+|++.....+      
T Consensus         4 ~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~   80 (164)
T 2pfi_A            4 LGRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP   80 (164)
T ss_dssp             ------CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------
T ss_pred             ccccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCC
Confidence            344566788999999987  668899999998 9999999999999999986 248999999999998654221      


Q ss_pred             --ccccccccccc------CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          270 --AVPLRKMIIRR------IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       270 --~~~l~~i~~~~------~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                        ..++.++|.++      +.++++++++.++++.|.+++.+.++|+| +|+++|+||..|+++.+.+.
T Consensus        81 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~  148 (164)
T 2pfi_A           81 GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNL  148 (164)
T ss_dssp             CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhh
Confidence              24566765444      68899999999999999999999999999 69999999999999887654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.64  E-value=3.7e-16  Score=156.11  Aligned_cols=151  Identities=10%  Similarity=0.103  Sum_probs=128.0

Q ss_pred             cccHHHHHHHHHhcccccccCCCCC-----HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  240 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~  240 (351)
                      .+|++|+...+..    .+..|.+.     +++++++++++++     +++|+|  +++++++++++. ++++.+.++++
T Consensus        54 ~vt~~eLa~av~~----~Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIAR----AGGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHH----TTCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHH----cCCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            4678899988874    22234454     6788999888765     679987  678899999998 99999999999


Q ss_pred             cEEeeEcC-CCCceeEEeEhhhhccccccccccccccccc-cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccccc
Q 018729          241 SRVPVYSG-NPTNIIGLILVKNLLSVDYRDAVPLRKMIIR-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGE  318 (351)
Q Consensus       241 sr~PV~~~-~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~-~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiV  318 (351)
                      +++||+++ +.++++|+|+.+|++... +.+.++.++|.+ +++++++++++.++++.|++++.+.++|||++|+++|++
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiv  200 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI  200 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            99999982 348999999999998642 345688998666 889999999999999999999999999999999999999


Q ss_pred             chhhhhccccC
Q 018729          319 LFKDNCKKPRG  329 (351)
Q Consensus       319 T~~Dil~~l~~  329 (351)
                      |.+|+++.+..
T Consensus       201 t~~Dil~~~~~  211 (491)
T 1zfj_A          201 TIKDIEKVIEF  211 (491)
T ss_dssp             EHHHHHHHHHC
T ss_pred             EHHHHHHHHhc
Confidence            99999998764

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.64  E-value=1.9e-16  Score=147.16  Aligned_cols=148  Identities=15%  Similarity=0.176  Sum_probs=122.7

Q ss_pred             cccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEee
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  245 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV  245 (351)
                      .+|.+||...+..    +.+.       .+...+.+++.+.+++++|+|  +++++++++++. ++++.+.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~~~-------~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YCKD-------SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----cccc-------cccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            4677787765531    1100       344556667778999999997  668899999998 9999999999999999


Q ss_pred             EcCCCCceeEEeEhhhhcccccc--ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhh
Q 018729          246 YSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDN  323 (351)
Q Consensus       246 ~~~~~d~ivGiv~~kdll~~~~~--~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Di  323 (351)
                      ++++ ++++|+++.+|++.....  ...++.++|.+++.++++++++.++++.|++++.+.++|+|++|+++|++|..|+
T Consensus       130 vd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl  208 (296)
T 3ddj_A          130 VDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA  208 (296)
T ss_dssp             ECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             EcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence            9865 899999999999875432  2357888877889999999999999999999999999999999999999999999


Q ss_pred             hcccc
Q 018729          324 CKKPR  328 (351)
Q Consensus       324 l~~l~  328 (351)
                      ++.+.
T Consensus       209 ~~~~~  213 (296)
T 3ddj_A          209 IKQLA  213 (296)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.63  E-value=4.1e-16  Score=156.08  Aligned_cols=150  Identities=12%  Similarity=0.123  Sum_probs=123.8

Q ss_pred             cccHHHHHHHHHhcccccccCCCCC-----HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  240 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~  240 (351)
                      .+|++++...+...+    .-|.|+     +++.++++++..     .++.|++  +++++++++++. ++++.+.++++
T Consensus        77 tvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~~  144 (511)
T 3usb_A           77 TVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYRI  144 (511)
T ss_dssp             TTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHCC
T ss_pred             hhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcCC
Confidence            468899877775322    124443     455667777765     5567865  678899999998 99999999999


Q ss_pred             cEEeeEcC--CCCceeEEeEhhhhccccccccccccccccc-cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccc
Q 018729          241 SRVPVYSG--NPTNIIGLILVKNLLSVDYRDAVPLRKMIIR-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEG  317 (351)
Q Consensus       241 sr~PV~~~--~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~-~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~Gi  317 (351)
                      +++||+++  + ++++|+|+.+|+... ...+.++.++|.+ +++++++++++.++++.|++++.+.++||||+|+++|+
T Consensus       145 s~~pVvd~g~~-~~lvGiVt~rDl~~~-~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~Gi  222 (511)
T 3usb_A          145 SGVPVVNNLDE-RKLVGIITNRDMRFI-QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGL  222 (511)
T ss_dssp             SEEEEESCTTT-CBEEEEEEHHHHTTC-CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             cEEEEEecCCC-CEEEEEEEehHhhhh-ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeee
Confidence            99999986  4 899999999999763 3335688998665 88999999999999999999999999999999999999


Q ss_pred             cchhhhhccccC
Q 018729          318 ELFKDNCKKPRG  329 (351)
Q Consensus       318 VT~~Dil~~l~~  329 (351)
                      ||.+|+++.+..
T Consensus       223 IT~~Dil~~~~~  234 (511)
T 3usb_A          223 ITIKDIEKVIEF  234 (511)
T ss_dssp             EEHHHHHHHHHC
T ss_pred             ccHHHHHHhhhc
Confidence            999999998754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.61  E-value=2.8e-16  Score=144.10  Aligned_cols=151  Identities=12%  Similarity=0.138  Sum_probs=120.7

Q ss_pred             cccHHHHHHHHHhcccccccCCCCCHHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEee
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  245 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV  245 (351)
                      .+|.+|+...+..    +.+.+.++   .....++++..+.+++++|+|  ++++++.++++. ++++.+.+++++++||
T Consensus        51 ivt~~di~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~V  120 (280)
T 3kh5_A           51 IITSMDIVDFMGG----GSKYNLIR---EKHERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPI  120 (280)
T ss_dssp             EEEHHHHHHHTTT----SGGGHHHH---TTSTTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEE
T ss_pred             EEEHHHHHHHhcc----cchhhhhh---hccccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEE
Confidence            4688888876641    11112111   111233444457899999987  678899999998 9999999999999999


Q ss_pred             EcCCCCceeEEeEhhhhcccccc---ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhh
Q 018729          246 YSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKD  322 (351)
Q Consensus       246 ~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~D  322 (351)
                      ++++ ++++|+++.+|++....+   ...++.++|.+++.++++++++.++++.|++++.+.++|+ ++|+++|+||..|
T Consensus       121 vd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~d  198 (280)
T 3kh5_A          121 VNDE-NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTD  198 (280)
T ss_dssp             ECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHH
T ss_pred             EcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHH
Confidence            9876 899999999999875432   2347888877889999999999999999999999999999 6899999999999


Q ss_pred             hhcccc
Q 018729          323 NCKKPR  328 (351)
Q Consensus       323 il~~l~  328 (351)
                      +++.+.
T Consensus       199 l~~~~~  204 (280)
T 3kh5_A          199 FIKLLG  204 (280)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.59  E-value=2e-16  Score=158.34  Aligned_cols=153  Identities=11%  Similarity=0.075  Sum_probs=21.7

Q ss_pred             cccHHHHHHHHHhcccccccCCCC-----CHHHHHHHHhhhcccccccccc-cccCcceEEEeCCCCccHHHHHHHHhcC
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDL-----THDETTIIAGALELTEKTAKDA-MTPISKAFSLDLDATLTLDTLNAIMTMG  239 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l-----~~~e~~~i~~vl~l~~~~v~~i-Mtpr~~v~~v~~~~t~~~e~~~~~~~~~  239 (351)
                      .++++++...+...+    ..|.+     .+++++++.++..      .++ |+|  +++++++++++. ++++.+.+++
T Consensus        61 ~vt~~~la~~la~~g----g~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~  127 (503)
T 1me8_A           61 SVSGEKMAIALAREG----GISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTT  127 (503)
T ss_dssp             TTCSHHHHHHHHHTT----CEEEECCSSCHHHHHHHHHHHHT------TTC-----------------------------
T ss_pred             hhhHHHHHHHHHhCC----CcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcC
Confidence            467889987776321    11222     2567778877654      345 987  778999999998 9999999999


Q ss_pred             CcEEeeEcCC--CCceeEEeEhhhhcccccccccccccccccc--CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcc
Q 018729          240 HSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKK  315 (351)
Q Consensus       240 ~sr~PV~~~~--~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~--~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~  315 (351)
                      ++++||++++  .++++|+|+.+|++......+.+++++|.++  ++++++++++.++++.|++++.+.++|+||+|+++
T Consensus       128 ~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lv  207 (503)
T 1me8_A          128 HNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLR  207 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEE
Confidence            9999999864  3799999999999853222346788986555  89999999999999999999999999999999999


Q ss_pred             cccchhhhhccccCCC
Q 018729          316 EGELFKDNCKKPRGQP  331 (351)
Q Consensus       316 GiVT~~Dil~~l~~~~  331 (351)
                      |+||.+|+++.+....
T Consensus       208 GiIT~~Dil~~~~~~~  223 (503)
T 1me8_A          208 YIVFRKDYDRSQVCHN  223 (503)
T ss_dssp             --------------CC
T ss_pred             EEEEecHHHHhhhccc
Confidence            9999999999886543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.58  E-value=4.4e-15  Score=132.17  Aligned_cols=119  Identities=14%  Similarity=0.063  Sum_probs=106.2

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCcee
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV  284 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V  284 (351)
                      ..+++++|++  +++++++++++. ++++.+.+++++++||++++ ++++|+++.+|+.....  +.++.++|.+++.++
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v   85 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFV   85 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCE
T ss_pred             ccCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEE
Confidence            3578999976  678899999998 99999999999999999865 89999999999987643  357889877888999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          285 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      ++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..
T Consensus        86 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           86 HEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             ETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.58  E-value=2.5e-16  Score=157.06  Aligned_cols=146  Identities=12%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             cccHHHHHHHHHhcccccccCCCCC-----HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  240 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~  240 (351)
                      .+|++|+...+..    .+..|.+.     +++++++++++++++     +|++  +++++++++++. ++++.+.++++
T Consensus        57 ~vt~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~v~~~~~-----~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMAR----EGGLGVIHRNMGIEEQVEQVKRVKRAER-----LIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHH----TTCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHh----cCCceeecCCCCHHHHHHHHHhhcchhh-----cccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            4678888887763    22223443     577899999988754     6874  779999999998 99999999999


Q ss_pred             cEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccch
Q 018729          241 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF  320 (351)
Q Consensus       241 sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~  320 (351)
                      +++||+++  ++++|+|+.+|++.   +.+.++.++|.+++.++++++++.++++.|++++.+.++|+|++|+++|+||.
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~  199 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITM  199 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEH
Confidence            99999986  89999999999986   33567889876688999999999999999999999999999999999999999


Q ss_pred             hhhhcccc
Q 018729          321 KDNCKKPR  328 (351)
Q Consensus       321 ~Dil~~l~  328 (351)
                      +|+++...
T Consensus       200 ~Dil~~~~  207 (486)
T 2cu0_A          200 SDLVARKK  207 (486)
T ss_dssp             -------C
T ss_pred             HHHHHhhh
Confidence            99999865

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.56  E-value=5.5e-16  Score=154.50  Aligned_cols=149  Identities=13%  Similarity=0.173  Sum_probs=24.3

Q ss_pred             cccHHHHHHHHHhcccccccCCCCC-----HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCC
Q 018729          166 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  240 (351)
Q Consensus       166 ~~t~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~  240 (351)
                      .+|++++...+...    +.-|.++     +++++++.++.     +++++|++  +++++++++++. ++++.+.++++
T Consensus        52 tVTe~~lA~ala~~----GGiGvI~~~~~~e~~a~~v~~vk-----~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~~  119 (490)
T 4avf_A           52 TVTEARLAIAMAQE----GGIGIIHKNMGIEQQAAEVRKVK-----KHETAIVR--DPVTVTPSTKII-ELLQMAREYGF  119 (490)
T ss_dssp             TTCSHHHHHHHHHH----TSEEEECCSSCHHHHHHHHHHHH-----HCCC------------------------------
T ss_pred             hhCHHHHHHHHHHc----CCCccccCCCCHHHHHHHhhhhc-----ccccCccc--CceEeCCCCcHH-HHHHHHHHhCC
Confidence            46889999877642    2234444     66788888774     47888975  668999999998 99999999999


Q ss_pred             cEEeeEcCCCCceeEEeEhhhhcccccccccccccccc-c-cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCccccc
Q 018729          241 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-R-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGE  318 (351)
Q Consensus       241 sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~-~-~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiV  318 (351)
                      +++||++ + ++++|+|+.+|+... ...+.++.++|. + ++.++++++++.++++.|++++.+.++||||+|+++|+|
T Consensus       120 s~~pVvd-~-g~lvGIVt~rDl~~~-~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiI  196 (490)
T 4avf_A          120 SGFPVVE-Q-GELVGIVTGRDLRVK-PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLV  196 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEE-C-CEEEEEEEhHHhhhc-cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9999998 4 899999999998643 233568899865 3 689999999999999999999999999999999999999


Q ss_pred             chhhhhccccC
Q 018729          319 LFKDNCKKPRG  329 (351)
Q Consensus       319 T~~Dil~~l~~  329 (351)
                      |++|+++....
T Consensus       197 T~~Dil~~~~~  207 (490)
T 4avf_A          197 TFRDIEKAKTY  207 (490)
T ss_dssp             ----------C
T ss_pred             ehHHhhhhccC
Confidence            99999987643

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.56  E-value=5.9e-15  Score=135.24  Aligned_cols=119  Identities=15%  Similarity=0.181  Sum_probs=103.0

Q ss_pred             ccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc------------------c
Q 018729          209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD------------------A  270 (351)
Q Consensus       209 ~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~------------------~  270 (351)
                      +++|++  +++++++++|+. ++++.+.+++++++||++++.++++|+++.+|++.....+                  +
T Consensus         7 ~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
T 3kh5_A            7 KIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAIN   83 (280)
T ss_dssp             GTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTT
T ss_pred             HHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhh
Confidence            345655  789999999998 9999999999999999987558999999999998653211                  2


Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      .+++++|.+++.++++++++.++++.|++++.+.++|+|++|+++|++|..|+++.+.+.
T Consensus        84 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  143 (280)
T 3kh5_A           84 EPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK  143 (280)
T ss_dssp             SBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG
T ss_pred             hhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc
Confidence            478888777899999999999999999999999999999999999999999999876543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.54  E-value=5.2e-15  Score=139.08  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=109.0

Q ss_pred             cccccccccc---cccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----cccc
Q 018729          202 ELTEKTAKDA---MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPL  273 (351)
Q Consensus       202 ~l~~~~v~~i---Mtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~l  273 (351)
                      .+.+.+++++   |++  ++.+++.++++. ++++.+.+++++++||++++ ++++|+++.+|++....++     +.++
T Consensus       183 ~~~~~~v~~~~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v  258 (323)
T 3t4n_C          183 HFLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV  258 (323)
T ss_dssp             GGCCSBGGGTTCSBCT--TCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBH
T ss_pred             hhhhCcHHHcCCCCCC--CcEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCH
Confidence            3556789999   754  678899999998 99999999999999999875 8999999999998754332     3477


Q ss_pred             cccccc------cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          274 RKMIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       274 ~~i~~~------~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      .++|.+      +++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.++
T Consensus       259 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          259 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             HHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             HHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            888655      688999999999999999999999999999999999999999999988764

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.54  E-value=3.5e-15  Score=150.23  Aligned_cols=125  Identities=13%  Similarity=0.103  Sum_probs=107.8

Q ss_pred             ccccccccccccCcceEEEeCC-CCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMI  277 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~-~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~  277 (351)
                      +.+.+|+++|++  ++++++++ +++. ++++.|.+++++++||++++.++++|+|+.+|+++....    .+.++.++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            557899999986  67889999 9998 999999999999999998334899999999999865322    246789998


Q ss_pred             cccCceeCCCCCHHHHHHHHhhCCceEEEEEec----CCCcccccchhhhhccccCCCC
Q 018729          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD----LNEKKEGELFKDNCKKPRGQPE  332 (351)
Q Consensus       278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe----~g~~~GiVT~~Dil~~l~~~~~  332 (351)
                      .+++.+|++++++.++++.|.+++  +++|||+    +|+++|+||..|+++.+.....
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~~  514 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAAGKQ  514 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHTCCC
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHhccc
Confidence            899999999999999999997665  5799999    5999999999999999877654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.54  E-value=5.8e-15  Score=135.70  Aligned_cols=118  Identities=19%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~  285 (351)
                      ++|+++|++  +++++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....  +.+++++|.+++++++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            468999985  678899999998 99999999999999999864 89999999999986543  3578888667789999


Q ss_pred             CCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhc-cccC
Q 018729          286 EDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK-KPRG  329 (351)
Q Consensus       286 ~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~-~l~~  329 (351)
                      +++++.++++.|.+++.+.++|+|++|+++|++|..|+++ .+.+
T Consensus        75 ~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           75 ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998 6654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.54  E-value=6.5e-15  Score=133.43  Aligned_cols=119  Identities=15%  Similarity=0.161  Sum_probs=98.1

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----------------
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------------  268 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----------------  268 (351)
                      +.+|+|+|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++....                
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            4689999976  568899999998 99999999999999999875 899999999998754210                


Q ss_pred             --------------------------------------------------------------------------------
Q 018729          269 --------------------------------------------------------------------------------  268 (351)
Q Consensus       269 --------------------------------------------------------------------------------  268 (351)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------cccccccccc-ccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          269 ---------------------DAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       269 ---------------------~~~~l~~i~~-~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                                           ...+++++|. +++.++++++++.++++.|++++.+..+|+|++|+++|+||..|+++.
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence                                 0123556665 789999999999999999999999999999999999999999999876


Q ss_pred             c
Q 018729          327 P  327 (351)
Q Consensus       327 l  327 (351)
                      .
T Consensus       242 ~  242 (245)
T 3l2b_A          242 H  242 (245)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.53  E-value=4.5e-15  Score=137.75  Aligned_cols=124  Identities=12%  Similarity=0.124  Sum_probs=109.5

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----------cccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------DAVP  272 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----------~~~~  272 (351)
                      ..+.+++++|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....+          .+.+
T Consensus       153 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  228 (296)
T 3ddj_A          153 DEIFPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKV  228 (296)
T ss_dssp             CCCCBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCB
T ss_pred             cccccHHHhhcC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcC
Confidence            345689999975  668899999998 99999999999999999865 899999999999875431          2457


Q ss_pred             ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +.++|.++++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.++
T Consensus       229 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          229 VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  286 (296)
T ss_dssp             HHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHH
Confidence            8888778899999999999999999999999999999999999999999999988654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.50  E-value=6.7e-14  Score=128.58  Aligned_cols=122  Identities=13%  Similarity=0.079  Sum_probs=106.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhc------cccc------c---
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL------SVDY------R---  268 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll------~~~~------~---  268 (351)
                      .+.+++++|++  ++.+++.++++. ++.+.+.+++++++||.+++ ++++|+++.+|++      +...      .   
T Consensus       124 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  199 (282)
T 2yzq_A          124 KGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEE  199 (282)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             ccCcHHHHhCC--CCEEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhh
Confidence            36789999965  567899999998 99999999999999999865 7899999999998      4321      0   


Q ss_pred             -------------------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          269 -------------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       269 -------------------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                                         ...++.++|.+++.++++++++.++++.|.+++.+..+|+|+.|+++|+||..|+++.+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          200 EWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             -------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             hhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence                               1356888888889999999999999999999999999999998999999999999998765

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.48  E-value=3.3e-14  Score=129.73  Aligned_cols=125  Identities=14%  Similarity=0.046  Sum_probs=102.4

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC-CCceeEEeEhhhhccccccc-----------
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRD-----------  269 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~d~ivGiv~~kdll~~~~~~-----------  269 (351)
                      ...+++|+|+|++  +++++.+++++. ++.+.+.+++++++||++++ .++++|+|+.+||+......           
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~   85 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA   85 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence            3467899999986  789999999998 99999999999999999864 25799999999987531100           


Q ss_pred             --------------------------------------------------------------------------------
Q 018729          270 --------------------------------------------------------------------------------  269 (351)
Q Consensus       270 --------------------------------------------------------------------------------  269 (351)
                                                                                                      
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
T 2d4z_A           86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS  165 (250)
T ss_dssp             CCBCCC--------------------------------------------------------------------------
T ss_pred             hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence                                                                                            


Q ss_pred             -------------------cccc--c-ccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          270 -------------------AVPL--R-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       270 -------------------~~~l--~-~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                                         +.++  . .+|...|+.|.+++++.++...|++.+.+.++|+| .|+++|+||++|+++++
T Consensus       166 ~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai  244 (250)
T 2d4z_A          166 RFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  244 (250)
T ss_dssp             -CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                               0011  1 13456677899999999999999999999999997 59999999999999988


Q ss_pred             cCC
Q 018729          328 RGQ  330 (351)
Q Consensus       328 ~~~  330 (351)
                      .+.
T Consensus       245 ~~~  247 (250)
T 2d4z_A          245 EGS  247 (250)
T ss_dssp             HC-
T ss_pred             HHH
Confidence            653

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.46  E-value=6.9e-14  Score=131.94  Aligned_cols=126  Identities=7%  Similarity=0.073  Sum_probs=107.5

Q ss_pred             ccccccc---ccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccc
Q 018729          204 TEKTAKD---AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRK  275 (351)
Q Consensus       204 ~~~~v~~---iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~  275 (351)
                      .+.++++   +|++  ++.+++.++++. ++++.+.+++++++||++++ ++++|+++.+|++....+     .+.++.+
T Consensus       180 ~~~~v~~l~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~  255 (334)
T 2qrd_G          180 LRVPLNQMTIGTWS--NLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE  255 (334)
T ss_dssp             CCCBGGGSSCSBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHH
T ss_pred             hhCcHHHhCCcccC--CceEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHH
Confidence            4577888   4864  668899999998 99999999999999999865 799999999999875432     1356777


Q ss_pred             cccc------cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCC
Q 018729          276 MIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEK  333 (351)
Q Consensus       276 i~~~------~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~  333 (351)
                      +|.+      +++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.+....
T Consensus       256 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~~  319 (334)
T 2qrd_G          256 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT  319 (334)
T ss_dssp             HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC-
T ss_pred             HHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcccc
Confidence            7653      789999999999999999999999999999999999999999999988776543

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.43  E-value=2e-13  Score=128.67  Aligned_cols=124  Identities=13%  Similarity=0.114  Sum_probs=105.1

Q ss_pred             ccccccc--cccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----cccccccc
Q 018729          205 EKTAKDA--MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMI  277 (351)
Q Consensus       205 ~~~v~~i--Mtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~l~~i~  277 (351)
                      ..+++++  |+ ..++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....++     +.++.+++
T Consensus       189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~  265 (330)
T 2v8q_E          189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL  265 (330)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHH
Confidence            3456666  43 25678899999998 99999999999999999865 8999999999998765432     34666764


Q ss_pred             ------cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          278 ------IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       278 ------~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                            .+++.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..+.
T Consensus       266 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          266 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  325 (330)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             hccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence                  378899999999999999999999999999999999999999999999886643

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.33  E-value=1.7e-13  Score=136.82  Aligned_cols=129  Identities=9%  Similarity=0.113  Sum_probs=13.0

Q ss_pred             HHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc
Q 018729          192 DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV  271 (351)
Q Consensus       192 ~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~  271 (351)
                      ++++.+.++..     ++++|++  +++++++++++. ++++.+.+++++.+||++++ ++++|+|+.+|++.. .+.+.
T Consensus        86 ~~~~~v~~v~~-----~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~-~~~~~  155 (494)
T 1vrd_A           86 EQARQVSIVKK-----TENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE-KNLSK  155 (494)
T ss_dssp             HHHHHHHHHHT-----C---------------------------------------------------------------
T ss_pred             HHHHHHHhhhh-----HhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh-cCCCC
Confidence            34556666654     5778986  678999999998 99999999999999999865 799999999999763 22346


Q ss_pred             cccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          272 PLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       272 ~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      ++.++|.+  ++.++++++++.++++.|++++.+..+|||++|+++|+||..|+++.+...
T Consensus       156 ~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          156 KIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             -----------------------------------------------------CHHHHTCT
T ss_pred             cHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            78898766  889999999999999999999999999999999999999999999987665

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.25  E-value=6.9e-13  Score=133.09  Aligned_cols=120  Identities=14%  Similarity=0.163  Sum_probs=71.6

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhccccc-cccccccccccc--cC
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDY-RDAVPLRKMIIR--RI  281 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~-~~~~~l~~i~~~--~~  281 (351)
                      +++++|++  +.+++++++++. ++++.+.+++++++||++++  .++++|+|+.+|+..... ..+.++.++|.+  ++
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~  185 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIEL  185 (514)
T ss_dssp             TCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBCC
T ss_pred             hhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCC
Confidence            68899986  567899999998 99999999999999999863  379999999999976421 234678888766  78


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +++++++++.++++.|.+++.+.++|||++|+++|+||+.|+++.+..
T Consensus       186 ~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          186 VVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             CCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCC
T ss_pred             eEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999988754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.13  E-value=8.8e-12  Score=122.69  Aligned_cols=128  Identities=12%  Similarity=0.186  Sum_probs=10.5

Q ss_pred             HHHHHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC--CCceeEEeEhhhhcccccc
Q 018729          191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR  268 (351)
Q Consensus       191 ~~e~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~d~ivGiv~~kdll~~~~~  268 (351)
                      ++|.++++.+-.+++     .|+.  +.+++.++.++. |+++++.++++|.+||.++.  .++++|||+-+|+...  +
T Consensus       128 e~Qa~~V~~VKr~e~-----g~i~--dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d  197 (556)
T 4af0_A          128 EEQAAMVRRVKKYEN-----GFIT--DPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D  197 (556)
T ss_dssp             HHHHHHHHHHHHCCC-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccc-----CccC--CCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c
Confidence            456788888876654     3432  458899999998 99999999999999999852  3689999999998653  3


Q ss_pred             ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          269 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       269 ~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      .+.+++++|..++++++++.+++++.+.|++++..-++|||++|+++|+||++|+.+.-.
T Consensus       198 ~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          198 AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ------------------------------------------------------------
T ss_pred             cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            456899998888999999999999999999999999999999999999999999987653

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.61  E-value=5.5e-09  Score=92.46  Aligned_cols=103  Identities=12%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCc-ee
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP-RV  284 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~-~V  284 (351)
                      .+++++|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++...... ....+.+.+-.+ ..
T Consensus        72 ~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l~~~~~  146 (213)
T 1vr9_A           72 SSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRFSVLLE  146 (213)
T ss_dssp             SBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC-------------
T ss_pred             CcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEEEEEeC
Confidence            469999987  568899999998 99999999999999999875 8999999999998754321 112222111111 11


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEEecCCC
Q 018729          285 SEDMPLYDILNEFQKGHSHIAVVYKDLNE  313 (351)
Q Consensus       285 ~~~~~l~~lL~~~~~~~~~~aiVvDe~g~  313 (351)
                      ....++.++.+.|.+++.+..+|++.+|.
T Consensus       147 ~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          147 DKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             -----------------------------
T ss_pred             CCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence            33345899999999999999988766554

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.49  E-value=1.7e-07  Score=68.02  Aligned_cols=65  Identities=14%  Similarity=0.285  Sum_probs=52.9

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-c----ccccccccccccCcee
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R----DAVPLRKMIIRRIPRV  284 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-~----~~~~l~~i~~~~~~~V  284 (351)
                      +++++++++++. ++.+.|.+++++.+||.++  |+++|+++-+|+++... +    .+.+++++|.+++.+|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            357899999998 9999999999999999974  79999999999975322 1    2357888877777653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.37  E-value=1.7e-07  Score=84.24  Aligned_cols=60  Identities=20%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ...+++++|+| .++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++..
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLISTH  242 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC------
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhchh
Confidence            45789999998 7788999999998 99999999999999999876 8999999999998753

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.32  E-value=5.6e-07  Score=76.19  Aligned_cols=60  Identities=17%  Similarity=0.089  Sum_probs=55.4

Q ss_pred             cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +.+++++|.+++.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~   76 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIP   76 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCC
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhh
Confidence            467899988999999999999999999999999999999999999999999999886543

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.17  E-value=1.3e-06  Score=72.61  Aligned_cols=61  Identities=16%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~  268 (351)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+++++++||++ + |+++|+++.+|++....+
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHT
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            357899999987  568899999998 999999999999999998 4 899999999999986543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.13  E-value=1.8e-06  Score=72.08  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=55.6

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCC---ceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT---NIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d---~ivGiv~~kdll~~~  266 (351)
                      ..+.+++++|+++.++.++++++++. ++++.+.+++++++||++++ +   +++|+|+.+|++...
T Consensus        78 ~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l  142 (159)
T 3fv6_A           78 LTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKIL  142 (159)
T ss_dssp             TTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHH
T ss_pred             ccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHH
Confidence            46789999999877788999999998 99999999999999999865 5   899999999998754

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.09  E-value=3.6e-06  Score=66.57  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ...+++++|.+  ++.++++++++. ++++.+.+++.+++||++++ |+++|+++.+|++...
T Consensus        60 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           60 NKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLF  118 (122)
T ss_dssp             TCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHh
Confidence            34489999987  567899999998 99999999999999999875 8999999999998754

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.07  E-value=2.1e-06  Score=68.09  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=53.3

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+.+++++|+|  ++.++++++++. ++++.+.+++++++||+++  ++++|+++.+|++...
T Consensus        61 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           61 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAK  120 (125)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             cccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            3457889999987  668899999998 9999999999999999986  8999999999998754

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.04  E-value=3.8e-06  Score=68.27  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|+|   +.++++++++. ++++.|.+++..++||++++ |+++|+++.+|++....
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC-
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHHh
Confidence            356789999965   57899999998 99999999999999999875 89999999999987653

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.02  E-value=3.9e-06  Score=67.24  Aligned_cols=59  Identities=10%  Similarity=0.012  Sum_probs=54.2

Q ss_pred             cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +.+++++|.++++++++++++.++++.|++++.+.++|+|+ |+++|+||..|+.+.+..
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~   62 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKG   62 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSS
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhh
Confidence            45788988889999999999999999999999999999999 999999999999987654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.02  E-value=9.7e-06  Score=69.34  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=54.0

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++....
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            456789999986  568899999998 99999999999999999875 79999999999987654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.02  E-value=5.1e-06  Score=67.06  Aligned_cols=59  Identities=25%  Similarity=0.430  Sum_probs=52.8

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ..+.+++++|++  ++.++++++++. ++++.+.+++.+++||++ + |+++|+++.+|++...
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHH
Confidence            457899999987  568899999998 999999999999999998 4 8999999999998754

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.97  E-value=4.1e-06  Score=68.67  Aligned_cols=61  Identities=21%  Similarity=0.394  Sum_probs=52.7

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|.|  ++.++++++++. ++++.+.+++++++||++++ ++++|+|+.+|++....
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHHH
Confidence            346789999987  557899999998 99999999999999999865 89999999999987643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=97.95  E-value=6.5e-06  Score=59.52  Aligned_cols=49  Identities=14%  Similarity=0.026  Sum_probs=44.1

Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +++|.+++++.++++.|.+++...++|+|+ |+++|++|..|+++.+...
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~~   50 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAK   50 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence            568999999999999999999999999985 8999999999999876543

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.95  E-value=3.4e-06  Score=84.11  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=23.4

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccccccccccccc--ccC
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII--RRI  281 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~--~~~  281 (351)
                      .+.+++++|+|+.+++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++...... ...+...  ...
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l~v~  235 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRYLVG  235 (503)
T ss_dssp             -----------------------------------------------------------------CC-CCBCTTSCBCCE
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhccccccccc
Confidence            4568999999876689999999998 99999999999999999876 89999999999987654321 1222111  111


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEec-CCCcccccc
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD-LNEKKEGEL  319 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe-~g~~~GiVT  319 (351)
                      ..++. ....+.++.|.+.+.+.. ++|. +|...|.++
T Consensus       236 a~v~~-~~~~e~~~~l~e~gv~~l-~Vd~~~g~~~~~~~  272 (503)
T 1me8_A          236 AGINT-RDFRERVPALVEAGADVL-CIDSSDGFSEWQKI  272 (503)
T ss_dssp             EEECS-SSHHHHHHHHHHHTCSEE-EECCSCCCSHHHHH
T ss_pred             cccCc-hhHHHHHHHHHhhhccce-EEecccCcccchhh
Confidence            23444 566677888888888864 4443 354444333

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.95  E-value=5.6e-06  Score=68.85  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=52.6

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ..+.+++++|+|   +.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++...
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~l  151 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLAL  151 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHHH
Confidence            457889999987   57899999998 99999999999999999865 8999999999998754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.94  E-value=1.6e-05  Score=67.31  Aligned_cols=67  Identities=12%  Similarity=0.142  Sum_probs=55.1

Q ss_pred             HHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          195 TIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       195 ~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      +++....+-.+.+++++| +  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++...
T Consensus        96 dl~~~~~~~~~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~~l  162 (172)
T 3lhh_A           96 QLLSESIAGERLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMDAL  162 (172)
T ss_dssp             HHHHHHHTTCCCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             HHHHHHhhcCcccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHHHH
Confidence            344333333467899999 4  568899999998 99999999999999999875 8999999999998764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.94  E-value=5.3e-06  Score=66.71  Aligned_cols=59  Identities=20%  Similarity=0.352  Sum_probs=52.4

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      +.+++++|.+  ++.++++++++. ++++.+.+++.+++||++++ |+++|+++.+|++....
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAID  124 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHH
Confidence            5789999986  567899999998 99999999999999999865 89999999999987543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.93  E-value=1.2e-05  Score=64.66  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=50.8

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|.|   +.++++++++. ++++.|.+++..++||++++ |+++|+++.+|++...
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLEQI  124 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            46789999965   57899999998 99999999999999999875 8999999999998754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.93  E-value=9.2e-06  Score=68.15  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=53.8

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ...+.+++++|++  ++.++++++++. ++++.+.+++++++||+++  |+++|+|+.+|++....
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3457899999985  668899999998 9999999999999999986  89999999999987653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.92  E-value=1.3e-05  Score=64.87  Aligned_cols=56  Identities=11%  Similarity=0.048  Sum_probs=51.2

Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      .+++++|.++++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~   62 (138)
T 2yzi_A            7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR   62 (138)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            46788877888999999999999999999999999999989999999999999853

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=97.92  E-value=1e-05  Score=66.64  Aligned_cols=59  Identities=15%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             ccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          271 VPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       271 ~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .+++++|.+  +++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence            368888766  78999999999999999999999999999999999999999999987754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.92  E-value=1.9e-05  Score=64.15  Aligned_cols=57  Identities=16%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      +.+++++|++  ++.+++++ ++. ++++.+.+++.+++||++++ ++++|+++.+|+++..
T Consensus        70 ~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~  126 (141)
T 2rih_A           70 DGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCFER  126 (141)
T ss_dssp             TSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHSCH
T ss_pred             CCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcCCeEEEEEcCC-CcEEEEEEHHHHHHHH
Confidence            5789999976  66889999 998 99999999999999999865 8999999999998754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=97.92  E-value=1.6e-05  Score=65.25  Aligned_cols=57  Identities=11%  Similarity=0.132  Sum_probs=51.0

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      +.+++++| +  ++.++++++++. ++++.+.+++..++||++++ |+++|+++.+|++...
T Consensus        87 ~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~~l  143 (148)
T 3lv9_A           87 KIELEEIL-R--DIIYISENLTID-KALERIRKEKLQLAIVVDEY-GGTSGVVTIEDILEEI  143 (148)
T ss_dssp             CCCGGGTC-B--CCEEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SSEEEEEEHHHHHHHH
T ss_pred             CccHHHhc-C--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            78899999 3  457899999998 99999999999999999875 8999999999998754

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.90  E-value=1.3e-05  Score=64.46  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=50.9

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|.|   +.++++++++. ++++.+.+++..++||++++ |+++|+++.+|++...
T Consensus        70 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           70 GQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             TTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             CcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHHHH
Confidence            36789999954   57899999998 99999999999999999875 8999999999998653

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.90  E-value=7.5e-06  Score=66.47  Aligned_cols=62  Identities=13%  Similarity=0.187  Sum_probs=52.4

Q ss_pred             ccccccccccccCc----ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPIS----KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~----~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ..+.+++++|+++.    ++.+++.++++. ++++.+.+++.+++||++++ ++++|+++.+|++...
T Consensus        74 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~~l  139 (144)
T 2nyc_A           74 DLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYI  139 (144)
T ss_dssp             -CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             cCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHH
Confidence            34678999998753    578999999998 99999999999999999865 8999999999998754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.90  E-value=8.5e-06  Score=68.88  Aligned_cols=61  Identities=21%  Similarity=0.380  Sum_probs=53.6

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ...+.+++++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            3457789999987  457899999998 99999999999999999865 8999999999998764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.89  E-value=1.6e-05  Score=65.80  Aligned_cols=59  Identities=12%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      .+.+++++| +  ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++....
T Consensus        84 ~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           84 DKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEELF  142 (153)
T ss_dssp             TTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHHH
T ss_pred             CCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHHh
Confidence            377899999 4  568899999998 99999999999999999875 89999999999987643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.89  E-value=7e-06  Score=65.94  Aligned_cols=58  Identities=21%  Similarity=0.338  Sum_probs=52.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.+++.+++||+++  |+++|+++.+|++...
T Consensus        72 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           72 NTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  129 (133)
T ss_dssp             TTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             cccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            46789999987  668899999998 9999999999999999986  7999999999998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.87  E-value=1.1e-05  Score=64.44  Aligned_cols=59  Identities=14%  Similarity=0.089  Sum_probs=51.5

Q ss_pred             ccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecC-CCcccccchhhhhccccC
Q 018729          271 VPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL-NEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       271 ~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~-g~~~GiVT~~Dil~~l~~  329 (351)
                      .+++++|..  ++.++++++++.++++.|.+++.+..+|+|++ |+++|+||..|+++.+..
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~   64 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS   64 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc
Confidence            356777653  38899999999999999999999999999988 899999999999987753

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.86  E-value=1.3e-05  Score=64.63  Aligned_cols=58  Identities=10%  Similarity=0.056  Sum_probs=52.2

Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhh-hcccc
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDN-CKKPR  328 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Di-l~~l~  328 (351)
                      .+++++|.+++.++++++++.++++.|++++.+.++|+|++|+++|++|..|+ .+.+.
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            46788877788999999999999999999999999999999999999999999 77554

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.83  E-value=1.5e-05  Score=66.35  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~  264 (351)
                      .+.+++++|+|   +.++++++++. ++++.|.+++..++||++++ |+++|+++.+|++.
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dile  156 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDIIE  156 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHCC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhcC
Confidence            46789999975   57899999998 99999999999999999875 89999999999863

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.82  E-value=9.4e-06  Score=67.79  Aligned_cols=58  Identities=9%  Similarity=-0.022  Sum_probs=52.5

Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      .+++++|.+++++++++.++.++++.|++++.+.++|+|++|+++|+||..|+++.+.
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   62 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE   62 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence            4677887778899999999999999999999999999999999999999999987653

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.81  E-value=2.7e-05  Score=63.91  Aligned_cols=59  Identities=14%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|++  ++.++++++++. ++++.+.++++  +||++++ |+++|+|+.+|++....
T Consensus        84 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~--l~Vvd~~-g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           84 LEEMKVEQVMKQ--DIPVLKLEDSFA-KALEMTIDHPF--ICAVNED-GYFEGILTRRAILKLLN  142 (150)
T ss_dssp             GGGCBGGGTCBS--SCCEEETTCBHH-HHHHHHHHCSE--EEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             HhcCCHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCE--EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            356789999985  568899999998 99999999887  9999865 89999999999987643

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.81  E-value=1.7e-05  Score=63.88  Aligned_cols=58  Identities=17%  Similarity=0.149  Sum_probs=50.2

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ...+++++|.   ++.++++++++. ++++.|.+++..++||++++ |+++|+++.+|++...
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEI  125 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             chhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHHH
Confidence            3467899994   357899999998 99999999999999999875 8999999999998754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.81  E-value=3.8e-05  Score=76.63  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=80.1

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCc-
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP-  282 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~-  282 (351)
                      .+.+++++|+| .++++++.+.++. ++++.+.+++..++||+|++ ++++|+++.+|+++..... ....+...+..+ 
T Consensus       173 ~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~rl~V~  248 (511)
T 3usb_A          173 YSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGRLLVG  248 (511)
T ss_dssp             SSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSCBCCE
T ss_pred             CCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccceeee
Confidence            46789999987 5678899999998 99999999999999999876 8999999999998765332 122332222222 


Q ss_pred             -eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccc
Q 018729          283 -RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEG  317 (351)
Q Consensus       283 -~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~Gi  317 (351)
                       .+..+....+.++.+.+.+.+...|-..+|...|+
T Consensus       249 aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v  284 (511)
T 3usb_A          249 AAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGV  284 (511)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHH
T ss_pred             eeeeeccchHHHHHHHHhhccceEEecccccchhhh
Confidence             24434455677778888888877665555544443

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.77  E-value=1.8e-05  Score=65.49  Aligned_cols=59  Identities=12%  Similarity=0.016  Sum_probs=52.8

Q ss_pred             ccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          271 VPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       271 ~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .++.++|.+  ++++++++.++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..
T Consensus        11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~   71 (157)
T 2emq_A           11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG   71 (157)
T ss_dssp             CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBC
T ss_pred             CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhc
Confidence            567788654  78899999999999999999999999999999999999999999987653

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.75  E-value=2.5e-05  Score=68.48  Aligned_cols=60  Identities=17%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.+++...+||++++ |+++|+|+..|++....
T Consensus       114 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          114 PHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVR  173 (205)
T ss_dssp             TTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            46789999976  568899999998 99999999999999999875 89999999999987653

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.71  E-value=1.4e-05  Score=66.86  Aligned_cols=58  Identities=17%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      +.+.+++++|++  ++.++++++++. ++++.+.++++  +||++++ |+++|+|+.+|++++.
T Consensus        83 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~--lpVVd~~-g~l~GiiT~~Dil~~~  140 (156)
T 3k6e_A           83 MADTDIVHMTKT--DVAVVSPDFTIT-EVLHKLVDESF--LPVVDAE-GIFQGIITRKSILKAV  140 (156)
T ss_dssp             HTTSBGGGTCBC--SCCCBCTTCCHH-HHHHHTTTSSE--EEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             ccccCHHHhhcC--CceecccccHHH-HHHHHHHHcCC--eEEEecC-CEEEEEEEHHHHHHHH
Confidence            356789999976  668899999998 99999987764  9999876 8999999999998764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.70  E-value=2.4e-05  Score=65.02  Aligned_cols=59  Identities=8%  Similarity=0.033  Sum_probs=53.1

Q ss_pred             cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEec--CCCcccccchhhhhcccc
Q 018729          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD--LNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe--~g~~~GiVT~~Dil~~l~  328 (351)
                      ..+++++|.++++++++++++.++++.|.+++.+.++|+|+  +|+++|+||..|+.+.+.
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~   72 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ   72 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHH
Confidence            35678887788899999999999999999999999999996  799999999999998764

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.65  E-value=1.8e-05  Score=65.82  Aligned_cols=59  Identities=12%  Similarity=-0.035  Sum_probs=52.7

Q ss_pred             ccccccccc--cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          271 VPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       271 ~~l~~i~~~--~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .++.++|.+  ++++++++.++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..
T Consensus        14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   74 (159)
T 1yav_A           14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG   74 (159)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred             hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence            467787655  78999999999999999999999999999999999999999999987653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.60  E-value=4.9e-05  Score=64.48  Aligned_cols=60  Identities=13%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|++  ++.++++++++. ++++.+.+++.+++||++ + ++++|+|+.+|++....
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd-~-g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTH-N-GRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCCCcEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence            356789999976  568899999998 999999999999999998 4 89999999999987643

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.48  E-value=7.2e-05  Score=68.46  Aligned_cols=60  Identities=17%  Similarity=0.330  Sum_probs=52.9

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      .+.+++++|++  ++.+++.++++. ++++.|.+++...+||++++ |+++|+|+..|++....
T Consensus       197 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          197 PRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC-
T ss_pred             CCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHH
Confidence            56789999976  568899999998 99999999999999999875 89999999999987543

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.42  E-value=8.9e-05  Score=62.96  Aligned_cols=59  Identities=14%  Similarity=0.050  Sum_probs=52.0

Q ss_pred             ccccccccc--ccCceeCCCCCHHHHHHHHhhCCceEEEEEecC-CCcccccchhhhhcccc
Q 018729          270 AVPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL-NEKKEGELFKDNCKKPR  328 (351)
Q Consensus       270 ~~~l~~i~~--~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~-g~~~GiVT~~Dil~~l~  328 (351)
                      +.+++++|.  +++++++++.++.++++.|++++....+|+|++ |+++|+||..|+++.+.
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~   96 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI   96 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh
Confidence            467889864  467889999999999999999999999999987 89999999999997653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.41  E-value=8.9e-05  Score=67.10  Aligned_cols=59  Identities=7%  Similarity=0.054  Sum_probs=53.0

Q ss_pred             cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecC--CCcccccchhhhhcccc
Q 018729          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL--NEKKEGELFKDNCKKPR  328 (351)
Q Consensus       270 ~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~--g~~~GiVT~~Dil~~l~  328 (351)
                      +..++++|.+++.+|.+++++.++.+.|.+++.+-.+|||+.  |+++|+||..|+++.+.
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~   72 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ   72 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHH
Confidence            457889988999999999999999999999999999999974  68999999999997653

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.36  E-value=9.9e-05  Score=67.96  Aligned_cols=59  Identities=17%  Similarity=0.342  Sum_probs=52.8

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.+++.+++||++++ |+++|+|+..|++...
T Consensus       199 ~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          199 DDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             TTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            46789999976  568899999998 99999999999999999865 8999999999998754

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.31  E-value=0.00017  Score=73.88  Aligned_cols=56  Identities=5%  Similarity=-0.030  Sum_probs=48.3

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      +++|+|++  ++.++++++++. |+.+.|.+++.+++||+ ++ |+++|+|+.+|+++...
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~-ea~~~M~~~~i~~lpVv-e~-G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVR-QLHFLFVMLMPSMIYVT-ER-GKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHH-HHHHHHHHTCCSEEEEE-ET-TEEEEEEEGGGTEECCC
T ss_pred             ccchhhcC--CCceecCCCcHH-HHHHHHHhcCCCEEEEE-EC-CEEEEEEehhhHHHHHh
Confidence            48999987  557899999998 99999999999999999 44 89999999999987654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.31  E-value=0.00016  Score=71.69  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|+|+.++++++.++++. ++++.+.+++...+||+|++ ++++|+++.+|+++..
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhhc
Confidence            4578999999876788999999998 99999999999999999876 8999999999998754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.16  E-value=0.00027  Score=69.80  Aligned_cols=59  Identities=17%  Similarity=0.350  Sum_probs=53.2

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|++  ++.++++++++. ++.+.+.+++...+||+|++ ++++|+++.+|++...
T Consensus       217 ~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          217 PRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             TTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHH
Confidence            57889999975  668899999998 99999999999999999876 8999999999998754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.15  E-value=0.00022  Score=70.78  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|+|+.++++++.+.++. ++++.+.+++..++||+|++ ++++|+++.+|+++..
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMITAKDFHKAE  207 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEECCC-----C
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeehHhHHHHhh
Confidence            4678999999877788999999998 99999999999999999876 8999999999998753

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.06  E-value=0.00023  Score=71.26  Aligned_cols=58  Identities=7%  Similarity=-0.039  Sum_probs=53.3

Q ss_pred             ccccccccccCceeCCC-CCHHHHHHHHhhCCceEEEEEe-cCCCcccccchhhhhcccc
Q 018729          271 VPLRKMIIRRIPRVSED-MPLYDILNEFQKGHSHIAVVYK-DLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~-~~l~~lL~~~~~~~~~~aiVvD-e~g~~~GiVT~~Dil~~l~  328 (351)
                      .+++++|.+++.+++++ +++.++++.|++++....+|+| +.|+++|+||..|+++.+.
T Consensus       384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~  443 (527)
T 3pc3_A          384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIV  443 (527)
T ss_dssp             SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHH
T ss_pred             CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHH
Confidence            56889888899999999 9999999999999999999999 7899999999999997664

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.05  E-value=0.00034  Score=69.43  Aligned_cols=61  Identities=28%  Similarity=0.418  Sum_probs=3.6

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|+|+.++.++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++..
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ----------------------------------------------------------CHHHH
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhhh
Confidence            3568999999866788999999998 99999999999999999876 8999999999998754

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.88  E-value=0.0008  Score=67.08  Aligned_cols=61  Identities=13%  Similarity=0.218  Sum_probs=42.4

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|+|+.++.++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++..
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKNR  231 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHHh
Confidence            4567999999766778999999998 99999999999999999876 8999999999998764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.79  E-value=0.00077  Score=66.75  Aligned_cols=108  Identities=17%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccC--
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI--  281 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~--  281 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.+++...+||++++ ++++|+++.+|+++...... ...+...+-.  
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~~~~-~~~~~~g~~~v~  222 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKKYKN-AVRDENGELLVA  222 (486)
T ss_dssp             ---------------------------------------------------------------CCTT-CCBCTTSCBCCE
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhhccc-cccccCCceeec
Confidence            35689999986  568899999998 99999999999999999875 89999999999987643211 1111100000  


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEec-CCCcccccc
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD-LNEKKEGEL  319 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe-~g~~~GiVT  319 (351)
                      ..++. .. .+.+..+.+.+.... |+|. .|...|.++
T Consensus       223 ~~~~~-~~-~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          223 AAVSP-FD-IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             EEECT-TC-HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             ceech-hh-HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence            11222 22 455677888887764 5563 566555554

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.63  E-value=0.00074  Score=66.72  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=20.1

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccc-ccccc-ccccC
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV-PLRKM-IIRRI  281 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~-~l~~i-~~~~~  281 (351)
                      .+.+++++||+  ++++++.+.+++ |+.+++.+++..++||+|++ ++++|+++.+|+.+....... .+.+- -.+--
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~Vg  273 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKNQNYPYASKVPESKQLYCG  273 (556)
T ss_dssp             ----------------------------------------------------------------CTTCCBCTTTCCBCCE
T ss_pred             cceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhhhhCCcchhcchhhceeeE
Confidence            35789999997  689999999998 99999999999999999876 899999999999875321100 01110 00000


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEe-cCCCcccccchh
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYK-DLNEKKEGELFK  321 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvD-e~g~~~GiVT~~  321 (351)
                      .-|.-...-.+-.+.+.+.+....+| | -+|.-.+++..-
T Consensus       274 AAVgv~~d~~eR~~aLv~AGvD~ivi-D~ahGhs~~v~~~i  313 (556)
T 4af0_A          274 AAIGTRPGDKDRLKLLAEAGLDVVVL-DSSQGNSVYQIEFI  313 (556)
T ss_dssp             EEECSSHHHHHHHHHHHHTTCCEEEE-CCSCCCSHHHHHHH
T ss_pred             EEeccCccHHHHHHHHHhcCCcEEEE-eccccccHHHHHHH
Confidence            11221222345556667777766544 5 455555544433

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.45  E-value=0.0025  Score=62.97  Aligned_cols=61  Identities=15%  Similarity=0.227  Sum_probs=53.2

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      .+.+++++|++ .++++++.++++. ++++.+.+++..++||++++ ++++|+++.+|++....
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHHh
Confidence            56789999985 2567899999998 99999999999999999876 89999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	8e-08
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	3e-05

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 8e-08
 Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 20/134 (14%)

Query: 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 262
           +      D +   SK    D    +      A++T G    P++     + +G++ + + 
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 263 LSV-------------------DYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSH 303
           +++                            +   + +  +S +  L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 304 IAVVYKDLNEKKEG 317
              V    +     
Sbjct: 129 RLPVIDPESGNTLY 142

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 16/156 (10%), Positives = 40/156 (25%), Gaps = 25/156 (16%)

Query: 188 DLTHDETTIIAGALE-LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY 246
           D+   +   +      +  +T+ D +    +    D+   +   +L+ +        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLW 59

Query: 247 SGNPTNIIGLILVKNLLSV-----------------------DYRDAVPLRKMIIRRIPR 283
                   GL+ + + ++V                         R+       I      
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL 319
           V     L D      K  +    +     E     +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMI 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.82
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.79
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.77
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.77
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.77
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.74
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.74
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.72
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.72
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.72
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.72
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.71
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.71
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.7
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.7
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.69
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.69
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.67
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.67
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.66
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.66
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.66
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.63
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.63
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.56
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.3
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.28
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.24
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.23
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.21
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.17
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.14
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.08
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.05
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.04
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.02
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.0
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.98
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	97.96
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.92
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	97.87
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.87
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.83
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.77
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.75
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.75
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.67
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.65
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.58
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.57
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	96.99

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=2.9e-21  Score=157.45  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=106.5

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---------ccccccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRK  275 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---------~~~~l~~  275 (351)
                      |.+|+++|+|..++++++.+++++ ++++.+.+++|+++||++++ ++++|+++.+|++.....         .+.++.+
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            578999999999999999999998 99999999999999999876 899999999999865321         1346778


Q ss_pred             cccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          276 MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       276 i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +|.++++++++++++.+++..|.+++  .++|+|++|+++|+||..|+++.+.
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             cccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHH
Confidence            87788999999999999999998764  5889999999999999999998875

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=5.6e-20  Score=147.83  Aligned_cols=121  Identities=20%  Similarity=0.185  Sum_probs=91.7

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~  285 (351)
                      ++|+++|++  +++++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....  +.++.+++.+++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~--~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhc--ccchhhccccceeecc
Confidence            478999998  568899999998 99999999999999999876 89999999999987543  3467788788999999


Q ss_pred             CCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCC
Q 018729          286 EDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE  332 (351)
Q Consensus       286 ~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~  332 (351)
                      ++.++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..+.+
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~~e  121 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE  121 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhHhc
Confidence            99999999999999999999999999999999999999998877654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=4.4e-19  Score=142.22  Aligned_cols=119  Identities=14%  Similarity=0.061  Sum_probs=107.9

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccCceeC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~  285 (351)
                      ++++++|++  ++.++++++|++ ++++.+.+++++.+||++++ ++++|+++.+|+++...  +.++.+++.+++++++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~--~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhc--cccccccccCccEEEC
Confidence            468999986  778899999998 99999999999999999865 89999999999987543  3578888888999999


Q ss_pred             CCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          286 EDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       286 ~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +++++.++++.|++++.+.++|+||+|+++|+||..|+++.+..+
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999987654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.77  E-value=2.6e-19  Score=144.79  Aligned_cols=121  Identities=17%  Similarity=0.206  Sum_probs=108.5

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc---ccccccccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIR  279 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~---~~~~l~~i~~~  279 (351)
                      +++.+|+++|++  +++++++++++. ++.+.+.+++++++||+++  ++++|+++.+|+++...+   .+.++.+++.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999976  789999999998 9999999999999999974  689999999999875432   24578888778


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +++++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=8.9e-20  Score=155.85  Aligned_cols=144  Identities=10%  Similarity=0.028  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHhhhcc-cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          189 LTHDETTIIAGALEL-TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       189 l~~~e~~~i~~vl~l-~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      +++.|+..++.+.+| .+.+++|+|+|..++++++.+.++. ++++.+.+++++++||++++.++++|+++.+|++....
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            356788999999997 8899999999999999999999998 99999999999999999976689999999999975321


Q ss_pred             c---------c--------------cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCC-----Ccccccc
Q 018729          268 R---------D--------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN-----EKKEGEL  319 (351)
Q Consensus       268 ~---------~--------------~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g-----~~~GiVT  319 (351)
                      .         .              .......+.++++++++++++.+++..|.+++.|.++|+|++|     +++|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT  160 (179)
T d2ooxe1          81 YYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLT  160 (179)
T ss_dssp             HHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEE
T ss_pred             hccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEe
Confidence            0         0              0112234567889999999999999999999999999999877     4889999


Q ss_pred             hhhhhccccCCCCC
Q 018729          320 FKDNCKKPRGQPEK  333 (351)
Q Consensus       320 ~~Dil~~l~~~~~~  333 (351)
                      ..||++.+.....+
T Consensus       161 ~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         161 QYRILKFISMNCKE  174 (179)
T ss_dssp             HHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHhhhH
Confidence            99999998766553

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=3.7e-19  Score=148.99  Aligned_cols=126  Identities=13%  Similarity=0.189  Sum_probs=108.5

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-------------
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-------------  269 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-------------  269 (351)
                      |.+.+++|+|.+..++++++.++++. ++++.+.+++++++||++++.++++|+++.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            45789999999999999999999998 9999999999999999987668899999999987643210             


Q ss_pred             ------cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEe-cCCCcccccchhhhhccccC
Q 018729          270 ------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK-DLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       270 ------~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvD-e~g~~~GiVT~~Dil~~l~~  329 (351)
                            .....+.+.++++.+++++++.++++.|.+++.|.++|+| |+|+++|+||..|+++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence                  0122345667889999999999999999999999999998 67999999999999987643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=2.5e-18  Score=141.68  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=106.6

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-c----cccccccccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R----DAVPLRKMIIRR  280 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-~----~~~~l~~i~~~~  280 (351)
                      ++|+|+|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|+++... .    .+.+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            579999986  678999999998 99999999999999999876 89999999999975432 1    235788988889


Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      ++++.+++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+.
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          79 IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             cccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=6.4e-19  Score=144.60  Aligned_cols=121  Identities=12%  Similarity=0.146  Sum_probs=107.5

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----------ccccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------DAVPLRK  275 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----------~~~~l~~  275 (351)
                      .+|+++|+|  +++++++++|+. ++++.+.+++++++||++++ ++++|+++.+|+++....          ...++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            368999998  578999999998 99999999999999999876 889999999998764321          1357888


Q ss_pred             cccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          276 MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       276 i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +|.+++++++++.++.++++.|++++.+.++|+|++|+++|+||..|+++.+.+.
T Consensus        78 im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHH
Confidence            8778899999999999999999999999999999999999999999999987653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=1.3e-18  Score=139.82  Aligned_cols=117  Identities=13%  Similarity=0.167  Sum_probs=101.8

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc-c----cccccccccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R----DAVPLRKMIIRR  280 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~-~----~~~~l~~i~~~~  280 (351)
                      .||+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.... +    ....+.++|..+
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            479999976  679999999998 99999999999999999876 89999999999875322 2    123566776678


Q ss_pred             CceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       281 ~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      +.++++++++.++++.|.+++.+..+|+|+ |+++|+||..|+++.+
T Consensus        77 ~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          77 IYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  122 (123)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             ceeeeecchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHhhC
Confidence            889999999999999999999999999985 8999999999999865

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.72  E-value=1.5e-18  Score=142.34  Aligned_cols=118  Identities=18%  Similarity=0.162  Sum_probs=104.6

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc------------ccccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------------DAVPL  273 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~------------~~~~l  273 (351)
                      .+|+|+|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++.....            .+.++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            479999987  668999999998 99999999999999999876 899999999999754321            13567


Q ss_pred             cccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          274 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       274 ~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      .++|.++++++++++++.++++.|.+++.+.++|+|+ |+++|+||..|+++.+.
T Consensus        78 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             hHhhccccccccccchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            8887889999999999999999999999999999985 99999999999998764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=3.3e-18  Score=138.33  Aligned_cols=116  Identities=15%  Similarity=0.088  Sum_probs=105.1

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcC-----CcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccC
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI  281 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~  281 (351)
                      ||+.+|++  +++++++++|+. ++++.+++++     .+.+||++++ ++++|++..++++....  +.++.++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~--~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccccc--cEEhhhhccCCC
Confidence            78999976  889999999998 9999998874     6889999876 89999999999987543  457999988899


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +++++++++.++++.|.+++.+.++|||++|+++|+||..|+++.+.
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998764

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=1e-17  Score=139.64  Aligned_cols=121  Identities=13%  Similarity=0.074  Sum_probs=106.5

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--------------
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------  268 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--------------  268 (351)
                      +.+.+++++|..  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....              
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            467899999965  689999999998 99999999999999999876 899999999998643110              


Q ss_pred             --------------------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          269 --------------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       269 --------------------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                                          .+.++.++|.+++.++++++++.++.+.|.+++.+..+|+|++|+++|+||..|+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                                02356777778889999999999999999999999999999999999999999999876

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=2.2e-18  Score=142.44  Aligned_cols=117  Identities=12%  Similarity=0.107  Sum_probs=105.0

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcC-----CcEEeeEcCCCCceeEEeEhhhhccccccccccccccccccC
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI  281 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~  281 (351)
                      +|+++|++  +++++++++|+. ++++.+.+++     .+.+||++++ ++++|+++.+|+.....  +.++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~--~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCT--TCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhccc--ccchHHhcccCC
Confidence            68999987  779999999998 9999998875     5788999876 89999999999987543  457889888899


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +++++++++.++++.|++++.+.++|||++|+++|+||..|+++.+..
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987644

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.71  E-value=4e-18  Score=137.69  Aligned_cols=118  Identities=11%  Similarity=0.144  Sum_probs=104.1

Q ss_pred             cccccccccC-cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc-----ccccccccccc
Q 018729          206 KTAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIR  279 (351)
Q Consensus       206 ~~v~~iMtpr-~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~-----~~~~l~~i~~~  279 (351)
                      +||+|+|+.+ .+++++++++|+. ++++.+.+++++.+||+++  |+++|+++.+|+++....     .+.++.++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            4799999864 4789999999998 9999999999999999974  799999999999764321     23578888889


Q ss_pred             cCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       280 ~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      ++.++.+++++.++++.|.+++.+..+|+| +|+++|+||..|+++++
T Consensus        79 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          79 QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            999999999999999999999999999998 59999999999999875

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.70  E-value=1.8e-17  Score=133.62  Aligned_cols=112  Identities=12%  Similarity=0.059  Sum_probs=96.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC-CCceeEEeEhhhhccccccccccccccccccCceeCCCCCHHHHHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN  295 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~d~ivGiv~~kdll~~~~~~~~~l~~i~~~~~~~V~~~~~l~~lL~  295 (351)
                      +.+++++++++. ++++.+.+++++++||+++. .++++|+++.+|+......+.......+.+++.+++++.++.++++
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   84 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAER   84 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHHHH
Confidence            457899999998 99999999999999999863 3789999999999876544333333444567788999999999999


Q ss_pred             HHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          296 EFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       296 ~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .|.+++.+..+|||++|+++|+||+.|+++.+..
T Consensus        85 ~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          85 ILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             HHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            9999999999999999999999999999998765

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=1.8e-17  Score=134.72  Aligned_cols=122  Identities=13%  Similarity=0.228  Sum_probs=107.2

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccC
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  281 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~  281 (351)
                      .+|+++|+.  +++++++++++. ++++.+.+++++++||++++ ++++|+++.+|++.....    .+.+++++|.+++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            479999975  789999999998 99999999999999999876 899999999999864322    2457889888899


Q ss_pred             ceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCC
Q 018729          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE  332 (351)
Q Consensus       282 ~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~  332 (351)
                      +++++++++.++++.|.+++.+..+| +++|+++|+||..|+++.+..+.+
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V-~~~~~~vGivt~~Dil~a~~~~le  130 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILI-EEEGKIVGIFTLSDLLEASRRRLE  130 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEE-EETTEEEEEEEHHHHHHHHHCCSC
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEE-EECCEEEEEEEHHHHHHHHHHHHc
Confidence            99999999999999999999887776 567999999999999999877655

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.69  E-value=1.5e-17  Score=138.52  Aligned_cols=125  Identities=8%  Similarity=0.064  Sum_probs=105.0

Q ss_pred             cccccccc-CcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----ccccccc----
Q 018729          207 TAKDAMTP-ISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKM----  276 (351)
Q Consensus       207 ~v~~iMtp-r~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~l~~i----  276 (351)
                      +++++|.+ +.+++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++......     +.++.++    
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            56788876 67899999999998 99999999999999999875 8999999999997654321     2233333    


Q ss_pred             --ccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCCCC
Q 018729          277 --IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEK  333 (351)
Q Consensus       277 --~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~~~  333 (351)
                        +..++.+++++.++.++++.|.+++.+.++|+|++|+++|+||+.|+++.+.++...
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~~~  138 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT  138 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCTTC
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCccc
Confidence              235667899999999999999999999999999999999999999999988765443

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=2.5e-17  Score=134.00  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=104.4

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc--------------ccc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAV  271 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~--------------~~~  271 (351)
                      ++|+++|++  ++.++++++++. ++++.+.++|++++||++   ++++|+++.+|++.....              .+.
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            479999988  567899999998 999999999999999985   469999999998765321              135


Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      +++++|.+++.++++++++.++++.|.+++.+.++|+|++|+++|+||..|+++.+..
T Consensus        75 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            6888888899999999999999999999999999999999999999999999998753

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.67  E-value=2.2e-17  Score=131.97  Aligned_cols=115  Identities=15%  Similarity=0.145  Sum_probs=101.0

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccccc----ccccccccccccCc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIP  282 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~----~~~~l~~i~~~~~~  282 (351)
                      +|+|+|++  ++.+++.++|+. |+++.+.+++++.+||.++  |+++|+++.+|+++....    .+.++.++|.++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            47899986  778999999998 9999999999999999974  799999999999875432    23578888888999


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      ++++++++.++++.|++++.+.++|+ |+|+++|++|..|++++.
T Consensus        76 ~v~~~~~l~~a~~~m~~~~~~~l~V~-~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          76 TISPRATIKEAAEKMVKNVVWRLLVE-EDDEIIGVISATDILRAK  119 (120)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHcCCeEEEEE-ECCEEEEEEEHHHHHhcC
Confidence            99999999999999999999988775 579999999999999863

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.67  E-value=4.3e-17  Score=135.86  Aligned_cols=122  Identities=14%  Similarity=0.016  Sum_probs=103.6

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC-CCceeEEeEhhhhccccccc-------------
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRD-------------  269 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~d~ivGiv~~kdll~~~~~~-------------  269 (351)
                      .+.+|+|+|++  ++.++++++++. ++++.+.+++++.+||++++ .+.++|+++..|++......             
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999986  789999999998 99999999999999999854 36799999999987542110             


Q ss_pred             ----------------cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          270 ----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       270 ----------------~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                                      ...+.++|.+++++|++++++.++++.|++.+.+.++|+| +|+++|+||+.|+++++.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhCC
Confidence                            1123445678889999999999999999999999999987 5999999999999998865

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.66  E-value=5.1e-17  Score=131.46  Aligned_cols=119  Identities=12%  Similarity=0.085  Sum_probs=101.3

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCC-CCceeEEeEhhhhccccccc--cccccccccccCc
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIP  282 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~d~ivGiv~~kdll~~~~~~--~~~l~~i~~~~~~  282 (351)
                      ++|+|+|++  +++++++++++. ++++.+.+++++++||++.+ .++++|+++..|++....++  .......+.++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            479999975  668999999998 99999999999999999533 47899999999998754332  1222233478889


Q ss_pred             eeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          283 RVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       283 ~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      ++.++.++.++++.|.+++.+..+|+|++|+++|+||..|+++.+
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999999999999999864

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=9.2e-17  Score=132.22  Aligned_cols=125  Identities=12%  Similarity=0.099  Sum_probs=104.5

Q ss_pred             cccccccccccc-CcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----ccc----
Q 018729          203 LTEKTAKDAMTP-ISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVP----  272 (351)
Q Consensus       203 l~~~~v~~iMtp-r~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~----  272 (351)
                      |-..++++++.+ ..+++++++++++. ++++.+.+++++.+||++++ ++++|+++.+|++......     +.+    
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~   83 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKA   83 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHH
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhc
Confidence            345678887754 35789999999998 99999999999999999865 8899999999998765332     111    


Q ss_pred             --ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          273 --LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       273 --l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                        ....+..+++++++++++.++++.|++++.+.++|+|++|+++|+||..|+++.+..
T Consensus        84 ~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          84 LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence              223345678899999999999999999999999999999999999999999998754

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=4.5e-17  Score=133.45  Aligned_cols=122  Identities=15%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             cccccccc-cccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc-----ccc-----
Q 018729          204 TEKTAKDA-MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVP-----  272 (351)
Q Consensus       204 ~~~~v~~i-Mtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~-----~~~-----  272 (351)
                      -.++++|+ +.+..++++++.++++. ++++.+.+++++++||++++ ++++|+++.+|++......     ...     
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~   81 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL   81 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhh
Confidence            34667776 45567899999999998 99999999999999999876 7899999999998654321     011     


Q ss_pred             -ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          273 -LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       273 -l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                       ....+..+++++++++++.++++.|.+++.|.++||||+|+++|+||..|+++.+
T Consensus        82 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          82 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence             1122356778999999999999999999999999999999999999999999875

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=7.9e-17  Score=132.49  Aligned_cols=121  Identities=16%  Similarity=0.111  Sum_probs=101.8

Q ss_pred             cccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccccc----------------
Q 018729          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----------------  269 (351)
Q Consensus       206 ~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~~~----------------  269 (351)
                      ..++++|+.  +.+++++++++. ++++.+.+++++++||++++ ++++|+++.+|++......                
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            457778876  558999999998 99999999999999999876 8999999999997642110                


Q ss_pred             ---cccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          270 ---AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       270 ---~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                         ..+..++ ++++.++++++++.++++.|.+++.+.++|||++|+++|+||..|+++.+..+.
T Consensus        80 ~~~~~~~~~~-~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3          80 RLIAKNASEI-MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             CCSSCBHHHH-CBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             hccccCHHHH-cCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence               1223343 567789999999999999999999999999999999999999999999886543

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.3e-17  Score=136.08  Aligned_cols=122  Identities=19%  Similarity=0.147  Sum_probs=100.4

Q ss_pred             cccccccccCcce----EEEeCCCCccHHHHHHHHhcCCcEEeeEcC-CCCceeEEeEhhhhcccccc------------
Q 018729          206 KTAKDAMTPISKA----FSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYR------------  268 (351)
Q Consensus       206 ~~v~~iMtpr~~v----~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~d~ivGiv~~kdll~~~~~------------  268 (351)
                      ..|+|+|+|+...    +.++.++|++ ++.+.+.+++++++||+++ +.++++|+++.+|++.....            
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            5689999997533    5567788998 9999999999999999953 34679999999999753210            


Q ss_pred             ----------------ccccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          269 ----------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       269 ----------------~~~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                                      ...++.++|.+++.++++++++.++++.|.+++.+.++|+| +|+++|+||+.|+++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                            01346777778889999999999999999999999998765 7999999999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.56  E-value=1.1e-16  Score=127.87  Aligned_cols=109  Identities=12%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             ceEEEeCCCCccHHHHHHHHhcCCcEEeeEcC--CCCceeEEeEhhhhccccccc-cccccccc--cccCceeCCCCCHH
Q 018729          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG--NPTNIIGLILVKNLLSVDYRD-AVPLRKMI--IRRIPRVSEDMPLY  291 (351)
Q Consensus       217 ~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~--~~d~ivGiv~~kdll~~~~~~-~~~l~~i~--~~~~~~V~~~~~l~  291 (351)
                      +.+++++++++. ++++.+.+++++++||+++  ..++++|+++.+|+......+ +.+..+++  ..++.++++++++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            336899999999 9999999999999999975  247899999999986543322 23444443  23577899999999


Q ss_pred             HHHHHHhhCCceEEEEEecCCCcccccchhhhhcc
Q 018729          292 DILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (351)
Q Consensus       292 ~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~  326 (351)
                      ++++.|++++.+.++|+|++|+++|+||+.|+++.
T Consensus        84 ~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             HHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             HHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            99999999999999999999999999999999875

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.30  E-value=1.2e-07  Score=74.97  Aligned_cols=59  Identities=17%  Similarity=0.342  Sum_probs=53.0

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|++  ++.++++++++. ++.+.+.+++..++||++++ ++++|+++.+|++...
T Consensus        63 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          63 DDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             TTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             ccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            56789999986  557899999998 99999999999999999876 8999999999998754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.28  E-value=4.1e-07  Score=72.14  Aligned_cols=60  Identities=10%  Similarity=0.003  Sum_probs=55.7

Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      .|++++|.+++.++++++++.++++.|.+++.+..+|+|++|+++|++|..|+++.+...
T Consensus         5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~   64 (132)
T d2yzia1           5 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP   64 (132)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             CcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc
Confidence            478999889999999999999999999999999999999999999999999999876644

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.24  E-value=4.2e-07  Score=72.09  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.+++.+++||++++ |+++|+++.+|+++...
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            45789999977  668899999998 99999999999999999876 89999999999998653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.23  E-value=4.6e-07  Score=73.64  Aligned_cols=59  Identities=17%  Similarity=0.018  Sum_probs=54.7

Q ss_pred             ccccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccC
Q 018729          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRG  329 (351)
Q Consensus       271 ~~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~  329 (351)
                      .+++++|.|++.++++++++.++++.|++++....+|+|++|+++|++|..|+++....
T Consensus         4 ~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~   62 (156)
T d2yzqa1           4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI   62 (156)
T ss_dssp             CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGG
T ss_pred             CCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcc
Confidence            56888889999999999999999999999999999999999999999999999876544

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.21  E-value=1.2e-06  Score=70.28  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=54.2

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|++  +++++++++++. ++.+.+.+++.+++||++++ ++++|+++.+|+++...
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHHh
Confidence            446689999975  678999999998 99999999999999999876 89999999999998654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.17  E-value=2.4e-07  Score=72.49  Aligned_cols=60  Identities=13%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      .+.++.++|+.+.++++++++.++. ++.+.+.+++.+++||++++ ++++|+++.+|+++.
T Consensus        59 ~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          59 HDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             -------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             cCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            3567889999888999999999998 99999999999999999876 899999999999864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=4.1e-07  Score=71.20  Aligned_cols=57  Identities=12%  Similarity=-0.009  Sum_probs=51.9

Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +++++|.+++.++.+++++.++++.|++++.+.++|+|++|+++|++|..|+++...
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~   58 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL   58 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTG
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhh
Confidence            467887788999999999999999999999999999999999999999999987544

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=1.6e-06  Score=69.86  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|++  +++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++...
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHHH
Confidence            346789999986  668899999998 99999999999999999876 89999999999987643

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.05  E-value=1.2e-06  Score=68.14  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=52.0

Q ss_pred             cccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       202 ~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      .+.+.+++++|++  ++.++++++++. ++++.+.+++..++||.++  |+++|+++.+|++++
T Consensus        60 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A  118 (120)
T d1pbja3          60 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRA  118 (120)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhc
Confidence            3567889999976  668899999998 9999999999999999863  799999999999865

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.04  E-value=5.3e-07  Score=72.10  Aligned_cols=57  Identities=9%  Similarity=-0.041  Sum_probs=52.3

Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhcccc
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPR  328 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~  328 (351)
                      +++++|.+++.+++++.++.++++.|++++.+..+|+|++|+++|++|..|+++.+.
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~   59 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE   59 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHH
Confidence            467887789999999999999999999999999999999999999999999987653

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.02  E-value=1.4e-06  Score=68.39  Aligned_cols=58  Identities=21%  Similarity=0.374  Sum_probs=51.9

Q ss_pred             ccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       205 ~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      +.+++++|.+  ++.++++++++. ++.+.+.+++.+++||++++ ++++|+++..|+++..
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAI  123 (127)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             cchhhhhhhh--hccccccccchh-HHHHHHHHcCceEEEEEeCC-CeEEEEEEHHHHHHHH
Confidence            5679999976  667899999998 99999999999999999875 8999999999998754

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.00  E-value=3e-06  Score=66.51  Aligned_cols=57  Identities=26%  Similarity=0.437  Sum_probs=50.9

Q ss_pred             cccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       204 ~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      .+.+++++|++  ++.++++++++. ++++.+.+++.+++||++ + |+++|+++.+|++++
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd-~-~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEE-C-CEEEEEEEHHHHHHH
Confidence            35789999976  668899999998 999999999999999997 3 799999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.98  E-value=2.5e-06  Score=66.55  Aligned_cols=60  Identities=13%  Similarity=0.169  Sum_probs=48.1

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      ..+..++++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|++++.
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~  116 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHT
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            345679999977  568899999998 99999999999999999876 8999999999998653

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.96  E-value=3.3e-06  Score=66.18  Aligned_cols=54  Identities=6%  Similarity=-0.177  Sum_probs=48.4

Q ss_pred             ccccCceeCCCCCHHHHHHHHhhCCceEEEEEec--CCCcccccchhhhhccccCC
Q 018729          277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD--LNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       277 ~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe--~g~~~GiVT~~Dil~~l~~~  330 (351)
                      |+++|+++++++++.++++.|.+++...++|+|+  +|+++|+||..|+.+....+
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~   58 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN   58 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC
Confidence            4678889999999999999999999999999997  78899999999998876543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=5.2e-06  Score=64.47  Aligned_cols=56  Identities=13%  Similarity=0.134  Sum_probs=51.4

Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      .++++|.++++.|+++.++.++++.|++.+.+.++|+|++|+++|++|..|+++..
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~   57 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD   57 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh
Confidence            35677888999999999999999999999999999999999999999999998653

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=3.2e-06  Score=66.71  Aligned_cols=60  Identities=10%  Similarity=-0.077  Sum_probs=53.4

Q ss_pred             cccccc--cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCCC
Q 018729          272 PLRKMI--IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       272 ~l~~i~--~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~~  331 (351)
                      +++++|  .+++.+|.++.++.++++.|.+++.+-.+|+|++|+++|++|..|+++.+....
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~   64 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLE   64 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSS
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccc
Confidence            566665  467899999999999999999999999999999999999999999998876543

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=3.1e-06  Score=67.67  Aligned_cols=55  Identities=18%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             ccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       273 l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      +.++|.++|+.+++++++.++++.|.+++.+.++|+|+.|+++|++|..|+++.+
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~   60 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS   60 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhh
Confidence            4566778889999999999999999999999999999999999999999998653

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.83  E-value=1.4e-05  Score=64.46  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             HHHHHhhhcccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccc
Q 018729          194 TTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (351)
Q Consensus       194 ~~~i~~vl~l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~  265 (351)
                      ..............++++|.+  .++++++++++. ++.+.|.+.+.+++||.++  |+++|+|+.+|++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v~~l~V~d~--g~lvGiIt~~Di~k~  157 (160)
T d2d4za3          91 YRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAA  157 (160)
T ss_dssp             HHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             hhhhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHHH
Confidence            333444455666778999977  457899999998 9999999999999999873  799999999999875

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.77  E-value=5.6e-06  Score=65.00  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEE--ecCCCcccccchhhhhccccCCC
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY--KDLNEKKEGELFKDNCKKPRGQP  331 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVv--De~g~~~GiVT~~Dil~~l~~~~  331 (351)
                      +++++|.++++.+++++++.++++.|.+++.+..+|+  |+.|+++|++|..|+.+.+.+..
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~   63 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL   63 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc
Confidence            4678888999999999999999999999999999999  66789999999999998776543

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=8.2e-06  Score=67.05  Aligned_cols=60  Identities=12%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             ccccccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhccccc
Q 018729          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (351)
Q Consensus       203 l~~~~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~~  267 (351)
                      ..+.+++++|+|  +++++++++++. ++.+.+.+++..++||.++  ++++|+|+.+|+++...
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            346779999987  568999999998 9999999999999999874  78999999999998653

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.75  E-value=4.8e-06  Score=66.14  Aligned_cols=56  Identities=11%  Similarity=0.098  Sum_probs=52.0

Q ss_pred             cccccccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccc
Q 018729          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP  327 (351)
Q Consensus       272 ~l~~i~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l  327 (351)
                      |++++|.+++.+|++++++.++++.|++++.+..+|+|++|++.|++|..|+.+.+
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~   58 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQL   58 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhh
Confidence            67788888899999999999999999999999999999999999999999998664

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.67  E-value=1.8e-05  Score=63.83  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             cccccccccccC----cceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          204 TEKTAKDAMTPI----SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       204 ~~~~v~~iMtpr----~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.+++++|+.+    .+.+++++++++. ++++.+.+++.+++||++++ |+++|+++.+|++++.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~lvGivT~~Dil~~~  132 (153)
T d2ooxe2          68 LDLSVGEALLKRPANFDGVHTCRATDRLD-GIFDAIKHSRVHRLFVVDEN-LKLEGILSLADILNYI  132 (153)
T ss_dssp             GGSBHHHHHHTSCCCSSCCCEECTTCBHH-HHHHHHHHSCCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccchhhheeeeecccCCCeEECCCCcHH-HHHHhhhhceeeEEEEEcCC-CEEEEEEEHHHHHHHH
Confidence            345677777543    3557899999998 99999999999999999876 8999999999998764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=2.3e-05  Score=62.39  Aligned_cols=53  Identities=15%  Similarity=0.056  Sum_probs=48.9

Q ss_pred             cccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       278 ~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      .+++++|+++.++.++++.|.+++.+.++|+|++|+++|++|..|+++.+...
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~   71 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK   71 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc
Confidence            36788999999999999999999999999999999999999999999887654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=2e-05  Score=62.46  Aligned_cols=54  Identities=9%  Similarity=0.052  Sum_probs=49.2

Q ss_pred             ccccCceeCCCCCHHHHHHHHhhCCceEEEEEecCCCcccccchhhhhccccCC
Q 018729          277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQ  330 (351)
Q Consensus       277 ~~~~~~~V~~~~~l~~lL~~~~~~~~~~aiVvDe~g~~~GiVT~~Dil~~l~~~  330 (351)
                      +..++.++.+++++.++++.|.+++...++|+|++|+++|++|..|+++.+...
T Consensus        15 ~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~   68 (140)
T d2nyca1          15 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG   68 (140)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC
T ss_pred             cCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhc
Confidence            456788999999999999999999999999999999999999999999876544

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=1.2e-05  Score=64.98  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=50.1

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCCCceeEEeEhhhhcccc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~d~ivGiv~~kdll~~~  266 (351)
                      .+.++|++  +++++++++++. ++++.|.+++..|+||.+++.++++|+|+.+|+++..
T Consensus        97 ~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          97 VYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             eeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            45678876  668899999998 9999999999999999986658999999999999764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.99  E-value=0.00015  Score=59.44  Aligned_cols=58  Identities=16%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             ccccccccCcceEEEeCCCCccHHHHHHHHhcCCcEEeeEcCCC----CceeEEeEhhhhccccc
Q 018729          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP----TNIIGLILVKNLLSVDY  267 (351)
Q Consensus       207 ~v~~iMtpr~~v~~v~~~~t~~~e~~~~~~~~~~sr~PV~~~~~----d~ivGiv~~kdll~~~~  267 (351)
                      .+.++|.+  +++++++++++. ++++.+.+++..|+||++++.    ++++|+++.+|+++...
T Consensus       108 ~~~~~~~~--~~i~v~~~~sl~-~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         108 RKIGAIPP--ETIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             HHTTCSCS--SCCCBCTTSBHH-HHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             eeeeeccc--CceEECCCCcHH-HHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            35556755  668999999998 999999999999999998532    36999999999998754