Citrus Sinensis ID: 018731
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | 2.2.26 [Sep-21-2011] | |||||||
| B9RX57 | 364 | Lipoyl synthase, chloropl | N/A | no | 0.997 | 0.961 | 0.802 | 1e-174 | |
| B9I666 | 376 | Lipoyl synthase 1, chloro | yes | no | 0.997 | 0.930 | 0.773 | 1e-163 | |
| Q8LEE8 | 394 | Lipoyl synthase, chloropl | yes | no | 0.994 | 0.885 | 0.737 | 1e-160 | |
| B9N2B0 | 397 | Lipoyl synthase 2, chloro | no | no | 0.997 | 0.881 | 0.714 | 1e-156 | |
| B8B016 | 384 | Lipoyl synthase 2, chloro | N/A | no | 0.863 | 0.789 | 0.747 | 1e-135 | |
| Q6L534 | 384 | Lipoyl synthase 2, chloro | yes | no | 0.863 | 0.789 | 0.744 | 1e-135 | |
| Q5ZAQ2 | 370 | Lipoyl synthase 1, chloro | no | no | 0.943 | 0.894 | 0.708 | 1e-133 | |
| B8AA76 | 370 | Lipoyl synthase 1, chloro | N/A | no | 0.943 | 0.894 | 0.708 | 1e-133 | |
| B6TN12 | 361 | Lipoyl synthase 1, chloro | N/A | no | 0.868 | 0.844 | 0.745 | 1e-132 | |
| C5XKZ1 | 368 | Lipoyl synthase, chloropl | N/A | no | 0.937 | 0.894 | 0.7 | 1e-132 |
| >sp|B9RX57|LISC_RICCO Lipoyl synthase, chloroplastic OS=Ricinus communis GN=LIP1P PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 609 bits (1571), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/364 (80%), Positives = 322/364 (88%), Gaps = 14/364 (3%)
Query: 2 IHQAIWKPSNSISYS-------IPSKIRCE-------SRTDTVKMKPPQRQQMGLHTGRD 47
+ Q ++ PS S+ S I S+I+C+ S T T + P ++ MG +TGRD
Sbjct: 1 MEQTLFNPSISMPKSFYHKHITISSRIQCQLSTNSPSSNTKTTTVTVPSKKTMGPYTGRD 60
Query: 48 PDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM 107
P+VKKPEWLRQ+APQG+RFQEVK SLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM
Sbjct: 61 PNVKKPEWLRQRAPQGERFQEVKHSLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM 120
Query: 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG 167
LLGDTCTRGCRFCAVKTSRNP+PPDP+EP+NTA AIASWGVDYIVLTSVDRDD+PDGGSG
Sbjct: 121 LLGDTCTRGCRFCAVKTSRNPSPPDPLEPQNTALAIASWGVDYIVLTSVDRDDLPDGGSG 180
Query: 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDP 227
HF+ TV+AMKK KP+IMVECLTSDFRGDL AVETLVHSGLDVFAHNIETVKRLQRIVRDP
Sbjct: 181 HFSETVQAMKKLKPEIMVECLTSDFRGDLEAVETLVHSGLDVFAHNIETVKRLQRIVRDP 240
Query: 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ 287
RAGYEQSL VLKHAK SK+G+ITKSSIMLGLGE+DD+LKEAMADLR+IDVDILTLGQYLQ
Sbjct: 241 RAGYEQSLSVLKHAKHSKEGMITKSSIMLGLGETDDELKEAMADLRAIDVDILTLGQYLQ 300
Query: 288 PTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNT 347
PTPLHLTVKEYVTPEKF FWK YGESIGFRYVASGP+VRSSYRAGELFVKTMV+ER+ N+
Sbjct: 301 PTPLHLTVKEYVTPEKFAFWKEYGESIGFRYVASGPMVRSSYRAGELFVKTMVKERSSNS 360
Query: 348 VAMP 351
A P
Sbjct: 361 AAKP 364
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Ricinus communis (taxid: 3988) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|B9I666|LISC1_POPTR Lipoyl synthase 1, chloroplastic OS=Populus trichocarpa GN=LIP1P-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 290/375 (77%), Positives = 320/375 (85%), Gaps = 25/375 (6%)
Query: 1 MIHQAIWKPSNSISYSIP-------------SKIRCES----RTDTVKMKPPQRQ----- 38
MI Q++ KPS S+S IP SKIRCES + + K PQ
Sbjct: 1 MIEQSLSKPSFSLSIPIPQPPKSKSSFLCSYSKIRCESVDYPSSSKIDAKHPQISSINSN 60
Query: 39 ---QMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWN 95
+MG +TGRDP+VKKPEWLRQKAPQG+R+ EVKESLS LKLNTVC+EAQCPNIGECWN
Sbjct: 61 GGGKMGSYTGRDPNVKKPEWLRQKAPQGERYDEVKESLSRLKLNTVCQEAQCPNIGECWN 120
Query: 96 GGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTS 155
GGGDGIATATIM+LGDTCTRGCRFCAVKTSRNP PPDPMEP NTA AIASWGVDYIV+TS
Sbjct: 121 GGGDGIATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEPLNTALAIASWGVDYIVITS 180
Query: 156 VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215
VDRDD+PDGGSGHFA+TV+AMK+ KP+IMVECLTSDFRGDL+AV+TLVHSGLDVFAHN+E
Sbjct: 181 VDRDDLPDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSGLDVFAHNVE 240
Query: 216 TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275
TVKRLQRIVRDPRAGYEQSL VLKHAK+SKKG+ITK+SIMLGLGESD+++KEAMADLR+I
Sbjct: 241 TVKRLQRIVRDPRAGYEQSLSVLKHAKISKKGMITKTSIMLGLGESDNEVKEAMADLRAI 300
Query: 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELF 335
VDILT GQYLQPTPLHLTVKEYVTPEKF FWK YGESIGFRYVASGPLVRSSYRAGELF
Sbjct: 301 GVDILTFGQYLQPTPLHLTVKEYVTPEKFAFWKEYGESIGFRYVASGPLVRSSYRAGELF 360
Query: 336 VKTMVRERAKNTVAM 350
VKTMV+E K A+
Sbjct: 361 VKTMVKESVKEAAAI 375
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Populus trichocarpa (taxid: 3694) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8LEE8|LISC_ARATH Lipoyl synthase, chloroplastic OS=Arabidopsis thaliana GN=LIP1P PE=2 SV=2 | Back alignment and function description |
|---|
Score = 565 bits (1455), Expect = e-160, Method: Compositional matrix adjust.
Identities = 290/393 (73%), Positives = 319/393 (81%), Gaps = 44/393 (11%)
Query: 1 MIHQAIWKPSNSISYS-------------IPSKIRCES-------RTDTVKMK------- 33
M H +I KP+ SIS S + +IRCES RT V +
Sbjct: 2 MHHCSITKPTFSISISTQKLHHHSSKFLNLGFRIRCESGDVSSPLRTKAVSLSSEMEDSS 61
Query: 34 -----------------PPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSL 76
P +MG TGRDP+VKKP WLRQKAPQG+RFQEVKESLS L
Sbjct: 62 SLKKSLMELEGKKSEPYPGGMPKMGPFTGRDPNVKKPAWLRQKAPQGERFQEVKESLSRL 121
Query: 77 KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEP 136
LNTVCEEAQCPNIGECWNGGGDG+ATATIM+LGDTCTRGCRFCAVKTSRNP PPDPMEP
Sbjct: 122 NLNTVCEEAQCPNIGECWNGGGDGVATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEP 181
Query: 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL 196
ENTAKAIASWGVDYIV+TSVDRDDIPDGGSGHFA+TVKAMK+ KPDIM+ECLTSDFRGDL
Sbjct: 182 ENTAKAIASWGVDYIVITSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDL 241
Query: 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256
AV+TLVHSGLDVFAHN+ETVKRLQR+VRDPRAGYEQS+ VLKHAK+SK G+ITK+SIML
Sbjct: 242 EAVDTLVHSGLDVFAHNVETVKRLQRLVRDPRAGYEQSMSVLKHAKISKPGMITKTSIML 301
Query: 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGF 316
GLGE+D++LKEAMADLR+IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWK YGESIGF
Sbjct: 302 GLGETDEELKEAMADLRAIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKTYGESIGF 361
Query: 317 RYVASGPLVRSSYRAGELFVKTMVRERAKNTVA 349
RYVASGPLVRSSYRAGELFVKTMV+E +++
Sbjct: 362 RYVASGPLVRSSYRAGELFVKTMVKESYSKSLS 394
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|B9N2B0|LISC2_POPTR Lipoyl synthase 2, chloroplastic OS=Populus trichocarpa GN=LIP1P-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 283/396 (71%), Positives = 316/396 (79%), Gaps = 46/396 (11%)
Query: 1 MIHQAIWKPSNSISYSIP-------------SKIRCES----RTDTVKMKPPQRQ----- 38
MI Q++ KPS S+S IP SKIRCES + K PQ
Sbjct: 1 MIEQSLSKPSFSLSIPIPKAPKSKSSFFCSYSKIRCESVDYPSLTKIDAKHPQNSTTINN 60
Query: 39 ------------------------QMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLS 74
+MG +TGRD + KKPEWLRQ+APQG+RF+EVKES+S
Sbjct: 61 GSSSSASVDLKNNEKGPYPYPGGGKMGPYTGRDLNEKKPEWLRQRAPQGERFEEVKESIS 120
Query: 75 SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPM 134
L LNTVC+EAQCPNIGECWNGGGDGIATATIM+LGDTCTRGCRFCAVKTSR P PPDPM
Sbjct: 121 RLNLNTVCQEAQCPNIGECWNGGGDGIATATIMVLGDTCTRGCRFCAVKTSRTPPPPDPM 180
Query: 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG 194
EP NTA AIASWGVDYIV+TSVDRDD+ DGGSGHFA+TV+AMK+ KP+IMVECLTSDFRG
Sbjct: 181 EPLNTALAIASWGVDYIVITSVDRDDLSDGGSGHFAQTVRAMKELKPEIMVECLTSDFRG 240
Query: 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254
DL+AV+TLVHSGLDVFAHN+ETVKRLQRIVRDPRAGYEQSL VLKHAK+SKKG+ITK+SI
Sbjct: 241 DLKAVDTLVHSGLDVFAHNVETVKRLQRIVRDPRAGYEQSLSVLKHAKVSKKGMITKTSI 300
Query: 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI 314
MLGLGE+DD++KEAM DLR+IDVDILT GQYLQPTPLHLTVKEYV+PEKF +WK YGESI
Sbjct: 301 MLGLGETDDEVKEAMTDLRAIDVDILTFGQYLQPTPLHLTVKEYVSPEKFAYWKEYGESI 360
Query: 315 GFRYVASGPLVRSSYRAGELFVKTMVRERAKNTVAM 350
GFRYVASGPLVRSSYRAGELFVKTMV+E AK A+
Sbjct: 361 GFRYVASGPLVRSSYRAGELFVKTMVKESAKEAAAI 396
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Populus trichocarpa (taxid: 3694) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|B8B016|LISC2_ORYSI Lipoyl synthase 2, chloroplastic OS=Oryza sativa subsp. indica GN=LIP1P-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/309 (74%), Positives = 263/309 (85%), Gaps = 6/309 (1%)
Query: 41 GLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDG 100
G +TGRDP +KP WLRQ+A QG+++ ++ESL LKLNTVC EAQCPNIGECWNGGG
Sbjct: 67 GPYTGRDPAARKPAWLRQRAAQGEKYARLRESLGELKLNTVCVEAQCPNIGECWNGGGGA 126
Query: 101 ------IATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLT 154
IATATIMLLGDTCTRGCRFCAVKTS P PPD +EP TA A+ASWGVDY+VLT
Sbjct: 127 GGDGDGIATATIMLLGDTCTRGCRFCAVKTSNKPPPPDALEPLRTAVAVASWGVDYVVLT 186
Query: 155 SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214
SVDRDD+PDGGSGHFA+TVKA+K+ KP I+VECLTSDFRGDL AV +L SGLDVFAHNI
Sbjct: 187 SVDRDDLPDGGSGHFAQTVKALKELKPGILVECLTSDFRGDLEAVSSLASSGLDVFAHNI 246
Query: 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274
ETV+ LQRIVRDPRA Y+QSL VLKHAK K G++TKSSIMLGLGE+D+++K+ M DLR+
Sbjct: 247 ETVRSLQRIVRDPRAAYDQSLAVLKHAKNCKDGMVTKSSIMLGLGETDEEVKQTMCDLRA 306
Query: 275 IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGEL 334
IDVDILTLGQYLQPT HL V+EYVTPEKFDFWK YGES+GF YVASGPLVRSSYRAGEL
Sbjct: 307 IDVDILTLGQYLQPTERHLRVREYVTPEKFDFWKEYGESLGFLYVASGPLVRSSYRAGEL 366
Query: 335 FVKTMVRER 343
FV+ +VR +
Sbjct: 367 FVQNLVRRK 375
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6L534|LISC2_ORYSJ Lipoyl synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=LIP1P-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/309 (74%), Positives = 263/309 (85%), Gaps = 6/309 (1%)
Query: 41 GLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDG 100
G +TGRDP +KP WLRQ+A QG+++ ++ESL LKLNTVC EAQCPNIGECW+GGG
Sbjct: 67 GPYTGRDPAARKPAWLRQRAAQGEKYARLRESLGELKLNTVCVEAQCPNIGECWDGGGGA 126
Query: 101 ------IATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLT 154
IATATIMLLGDTCTRGCRFCAVKTS P PPD +EP TA A+ASWGVDY+VLT
Sbjct: 127 GGDGDGIATATIMLLGDTCTRGCRFCAVKTSNKPPPPDALEPLRTAVAVASWGVDYVVLT 186
Query: 155 SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214
SVDRDD+PDGGSGHFA+TVKA+K+ KP I+VECLTSDFRGDL AV +L SGLDVFAHNI
Sbjct: 187 SVDRDDLPDGGSGHFAQTVKALKELKPGILVECLTSDFRGDLEAVSSLASSGLDVFAHNI 246
Query: 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274
ETV+ LQRIVRDPRA Y+QSL VLKHAK K G++TKSSIMLGLGE+D+++K+ M DLR+
Sbjct: 247 ETVRSLQRIVRDPRAAYDQSLAVLKHAKNCKDGMVTKSSIMLGLGETDEEVKQTMCDLRA 306
Query: 275 IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGEL 334
IDVDILTLGQYLQPT HL V+EYVTPEKFDFWK YGES+GF YVASGPLVRSSYRAGEL
Sbjct: 307 IDVDILTLGQYLQPTERHLRVREYVTPEKFDFWKEYGESLGFLYVASGPLVRSSYRAGEL 366
Query: 335 FVKTMVRER 343
FV+ +VR +
Sbjct: 367 FVQNLVRRK 375
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q5ZAQ2|LISC1_ORYSJ Lipoyl synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=LIP1P-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/340 (70%), Positives = 279/340 (82%), Gaps = 9/340 (2%)
Query: 11 NSISYSIPSKI---RCESRTDTVKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQ 67
N + S P + RC + P R+ G +TGRDP+VKKP WLRQ+A QG+++
Sbjct: 21 NPVCRSRPGSVSVARCRAEAAPPAPAPAARRAAGPYTGRDPEVKKPAWLRQRAAQGEKYA 80
Query: 68 EVKESLSSLKLNTVCEEAQCPNIGECWNGGGDG------IATATIMLLGDTCTRGCRFCA 121
++ES+ LKLNTVC EAQCPNIGECWNGGG IATATIM+LGDTCTRGCRFCA
Sbjct: 81 RLRESIGELKLNTVCVEAQCPNIGECWNGGGGAGGEGDGIATATIMVLGDTCTRGCRFCA 140
Query: 122 VKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181
VKTS P PPDP+EP NTA A+ASWGVDY+VLTSVDRDD+PDGGS HFA+TV+A+K+ KP
Sbjct: 141 VKTSNKPPPPDPLEPLNTALAVASWGVDYVVLTSVDRDDLPDGGSSHFAQTVRALKELKP 200
Query: 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHA 241
I+VECLTSDFRGDL AV L +SGLDVFAHNIETV+ LQRIVRDPRAGY+QSL VLKHA
Sbjct: 201 GILVECLTSDFRGDLEAVSALANSGLDVFAHNIETVRSLQRIVRDPRAGYDQSLAVLKHA 260
Query: 242 KLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTP 301
K K+G+ITKSSIMLGLGE+D+++K+AM DLR+I VDILTLGQYLQPT HLTV+EYVTP
Sbjct: 261 KSCKEGMITKSSIMLGLGETDEEVKQAMIDLRAIGVDILTLGQYLQPTERHLTVREYVTP 320
Query: 302 EKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVR 341
EKF FWK YGES+GFRYVASGPLVRSSYRAGELFV+ +VR
Sbjct: 321 EKFQFWKEYGESVGFRYVASGPLVRSSYRAGELFVQNLVR 360
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|B8AA76|LISC1_ORYSI Lipoyl synthase 1, chloroplastic OS=Oryza sativa subsp. indica GN=LIP1P-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/340 (70%), Positives = 279/340 (82%), Gaps = 9/340 (2%)
Query: 11 NSISYSIPSKI---RCESRTDTVKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQ 67
N + S P + RC + P R+ G +TGRDP+VKKP WLRQ+A QG+++
Sbjct: 21 NPVCRSRPGSVSVARCRAEAAPPAPAPAARRAAGPYTGRDPEVKKPAWLRQRAAQGEKYA 80
Query: 68 EVKESLSSLKLNTVCEEAQCPNIGECWNGGGDG------IATATIMLLGDTCTRGCRFCA 121
++ES+ LKLNTVC EAQCPNIGECWNGGG IATATIM+LGDTCTRGCRFCA
Sbjct: 81 RLRESIGELKLNTVCVEAQCPNIGECWNGGGGAGGEGDGIATATIMVLGDTCTRGCRFCA 140
Query: 122 VKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181
VKTS P PPDP+EP NTA A+ASWGVDY+VLTSVDRDD+PDGGS HFA+TV+A+K+ KP
Sbjct: 141 VKTSNKPPPPDPLEPLNTALAVASWGVDYVVLTSVDRDDLPDGGSSHFAQTVRALKELKP 200
Query: 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHA 241
I+VECLTSDFRGDL AV L +SGLDVFAHNIETV+ LQRIVRDPRAGY+QSL VLKHA
Sbjct: 201 GILVECLTSDFRGDLEAVSALANSGLDVFAHNIETVRSLQRIVRDPRAGYDQSLAVLKHA 260
Query: 242 KLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTP 301
K K+G+ITKSSIMLGLGE+D+++K+AM DLR+I VDILTLGQYLQPT HLTV+EYVTP
Sbjct: 261 KSCKEGMITKSSIMLGLGETDEEVKQAMIDLRAIGVDILTLGQYLQPTERHLTVREYVTP 320
Query: 302 EKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVR 341
EKF FWK YGES+GFRYVASGPLVRSSYRAGELFV+ +VR
Sbjct: 321 EKFQFWKEYGESVGFRYVASGPLVRSSYRAGELFVQNLVR 360
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|B6TN12|LISC1_MAIZE Lipoyl synthase 1, chloroplastic OS=Zea mays GN=LIP1P-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/311 (74%), Positives = 269/311 (86%), Gaps = 6/311 (1%)
Query: 37 RQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNG 96
R G +TGRDP+VKKP WLRQ+A QG+++ ++ES+ LKLNTVC EAQCPNIGECWNG
Sbjct: 42 RAPAGPYTGRDPEVKKPAWLRQRAAQGEKYARLRESIGELKLNTVCVEAQCPNIGECWNG 101
Query: 97 GGDG------IATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDY 150
GG IATATIM+LGDTCTRGCRFCAVKTS P PPDP+EP NTA A+ASWGVDY
Sbjct: 102 GGGAGGEGDGIATATIMVLGDTCTRGCRFCAVKTSNKPPPPDPLEPLNTALAVASWGVDY 161
Query: 151 IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210
+VLTSVDRDD+PDGGS HFA+TVKA+K+ KP I+VECLTSDFRGDL A+ +L SGLDV+
Sbjct: 162 VVLTSVDRDDLPDGGSSHFAQTVKALKELKPGILVECLTSDFRGDLEAISSLASSGLDVY 221
Query: 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMA 270
AHNIETV+ LQRIVRDPRAGY+QSL VLKHAK ++G++TKSSIMLGLGE+D+++K+AM
Sbjct: 222 AHNIETVRSLQRIVRDPRAGYDQSLAVLKHAKACREGMVTKSSIMLGLGETDEEVKQAMM 281
Query: 271 DLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYR 330
DLR+I VDILTLGQYLQPT HLTV+EYVTPEKF FWK YGES+GFRYVASGPLVRSSYR
Sbjct: 282 DLRAIGVDILTLGQYLQPTERHLTVREYVTPEKFQFWKEYGESVGFRYVASGPLVRSSYR 341
Query: 331 AGELFVKTMVR 341
AGELFV+ +VR
Sbjct: 342 AGELFVQNLVR 352
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Zea mays (taxid: 4577) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|C5XKZ1|LISC_SORBI Lipoyl synthase, chloroplastic OS=Sorghum bicolor GN=LIP1P PE=3 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/340 (70%), Positives = 278/340 (81%), Gaps = 11/340 (3%)
Query: 9 PSNSISYSIPSKIRCESRTDTVKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQE 68
P S+S + RC + + R G +TGRDP+VKKP WLRQ+A QG ++
Sbjct: 26 PRGSVSVA-----RCRAEAAPPTVGTASRAPAGPYTGRDPEVKKPAWLRQRAAQGDKYAR 80
Query: 69 VKESLSSLKLNTVCEEAQCPNIGECWNGGGDG------IATATIMLLGDTCTRGCRFCAV 122
++ES+ LKLNTVC EAQCPNIGECWNGGG IATATIM+LGDTCTRGCRFCAV
Sbjct: 81 LRESIGELKLNTVCVEAQCPNIGECWNGGGGAGGEGDGIATATIMVLGDTCTRGCRFCAV 140
Query: 123 KTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182
KTS P PPDP+EP NTA A+ASWGVDY+VLTSVDRDD+PDGGS HFA+TV+A+K+ KP
Sbjct: 141 KTSNKPPPPDPLEPLNTALAVASWGVDYVVLTSVDRDDLPDGGSSHFAQTVRALKELKPG 200
Query: 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAK 242
I+VECLTSDFRGDL AV +L +SGLDV+AHNIETV+ LQRIVRDPRAGY+QSL VLKHAK
Sbjct: 201 ILVECLTSDFRGDLEAVSSLANSGLDVYAHNIETVRSLQRIVRDPRAGYDQSLAVLKHAK 260
Query: 243 LSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPE 302
++G+ITKSSIMLGLGE+D+++K+AM DLR+I VDILTLGQYLQPT HLTV+EYVTPE
Sbjct: 261 DCREGMITKSSIMLGLGETDEEVKQAMIDLRAIGVDILTLGQYLQPTERHLTVREYVTPE 320
Query: 303 KFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRE 342
KF FWK YGES+GFRYVASGPLVRSSYRAGELFV+ +VR
Sbjct: 321 KFQFWKEYGESVGFRYVASGPLVRSSYRAGELFVQNLVRN 360
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Sorghum bicolor (taxid: 4558) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| 255554575 | 364 | lipoic acid synthetase, putative [Ricinu | 0.997 | 0.961 | 0.802 | 1e-172 | |
| 356575490 | 364 | PREDICTED: lipoyl synthase, chloroplasti | 0.982 | 0.947 | 0.824 | 1e-172 | |
| 225463795 | 372 | PREDICTED: lipoyl synthase, chloroplasti | 0.863 | 0.814 | 0.917 | 1e-165 | |
| 449458724 | 398 | PREDICTED: lipoyl synthase, chloroplasti | 0.897 | 0.791 | 0.882 | 1e-164 | |
| 224126729 | 376 | predicted protein [Populus trichocarpa] | 0.997 | 0.930 | 0.773 | 1e-161 | |
| 356534404 | 358 | PREDICTED: LOW QUALITY PROTEIN: lipoyl s | 0.968 | 0.949 | 0.807 | 1e-158 | |
| 18415808 | 394 | lipoyl synthase [Arabidopsis thaliana] g | 0.994 | 0.885 | 0.737 | 1e-158 | |
| 21553591 | 393 | lipoic acid synthase-like protein [Arabi | 0.994 | 0.888 | 0.737 | 1e-158 | |
| 224127031 | 397 | predicted protein [Populus trichocarpa] | 0.997 | 0.881 | 0.714 | 1e-154 | |
| 302821689 | 357 | hypothetical protein SELMODRAFT_186771 [ | 0.960 | 0.943 | 0.728 | 1e-144 |
| >gi|255554575|ref|XP_002518326.1| lipoic acid synthetase, putative [Ricinus communis] gi|308197093|sp|B9RX57.1|LISC_RICCO RecName: Full=Lipoyl synthase, chloroplastic; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoate synthase, plastidial; Short=LIP1p; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|223542546|gb|EEF44086.1| lipoic acid synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 292/364 (80%), Positives = 322/364 (88%), Gaps = 14/364 (3%)
Query: 2 IHQAIWKPSNSISYS-------IPSKIRCE-------SRTDTVKMKPPQRQQMGLHTGRD 47
+ Q ++ PS S+ S I S+I+C+ S T T + P ++ MG +TGRD
Sbjct: 1 MEQTLFNPSISMPKSFYHKHITISSRIQCQLSTNSPSSNTKTTTVTVPSKKTMGPYTGRD 60
Query: 48 PDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM 107
P+VKKPEWLRQ+APQG+RFQEVK SLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM
Sbjct: 61 PNVKKPEWLRQRAPQGERFQEVKHSLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM 120
Query: 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG 167
LLGDTCTRGCRFCAVKTSRNP+PPDP+EP+NTA AIASWGVDYIVLTSVDRDD+PDGGSG
Sbjct: 121 LLGDTCTRGCRFCAVKTSRNPSPPDPLEPQNTALAIASWGVDYIVLTSVDRDDLPDGGSG 180
Query: 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDP 227
HF+ TV+AMKK KP+IMVECLTSDFRGDL AVETLVHSGLDVFAHNIETVKRLQRIVRDP
Sbjct: 181 HFSETVQAMKKLKPEIMVECLTSDFRGDLEAVETLVHSGLDVFAHNIETVKRLQRIVRDP 240
Query: 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ 287
RAGYEQSL VLKHAK SK+G+ITKSSIMLGLGE+DD+LKEAMADLR+IDVDILTLGQYLQ
Sbjct: 241 RAGYEQSLSVLKHAKHSKEGMITKSSIMLGLGETDDELKEAMADLRAIDVDILTLGQYLQ 300
Query: 288 PTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNT 347
PTPLHLTVKEYVTPEKF FWK YGESIGFRYVASGP+VRSSYRAGELFVKTMV+ER+ N+
Sbjct: 301 PTPLHLTVKEYVTPEKFAFWKEYGESIGFRYVASGPMVRSSYRAGELFVKTMVKERSSNS 360
Query: 348 VAMP 351
A P
Sbjct: 361 AAKP 364
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575490|ref|XP_003555873.1| PREDICTED: lipoyl synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/359 (82%), Positives = 322/359 (89%), Gaps = 14/359 (3%)
Query: 1 MIHQAIWKPSNSISYSIPS-----------KIRCESRTDTVKMK--PPQRQQMGLHTGRD 47
MI Q+++ P SI++S PS +IRC++ + +V+ K P +G HTGRD
Sbjct: 1 MIRQSLYTPP-SITFSTPSPKRHRFAPPSWRIRCDASSVSVEQKVVGPYPGGLGPHTGRD 59
Query: 48 PDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM 107
P+ KKPEWLRQKAPQG+RFQE+KESLS LKLNTVCEEAQCPNIGECWNGGGDGIATATIM
Sbjct: 60 PNAKKPEWLRQKAPQGERFQEIKESLSHLKLNTVCEEAQCPNIGECWNGGGDGIATATIM 119
Query: 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG 167
LLGDTCTRGCRFCAVKTSRNP P DPMEPENTAKAIASWGVDYIVLTSVDRDD+PDGGSG
Sbjct: 120 LLGDTCTRGCRFCAVKTSRNPPPADPMEPENTAKAIASWGVDYIVLTSVDRDDLPDGGSG 179
Query: 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDP 227
HFA+TVKAMK KP+IMVECLTSDFRGDL+AVETLVHSGLDVFAHNIETVKRLQRIVRDP
Sbjct: 180 HFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSGLDVFAHNIETVKRLQRIVRDP 239
Query: 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ 287
RAGYEQSL VLKHAK SK+G+ITK+SIMLGLGESDD++KEAMADLR+IDVDILTLGQYLQ
Sbjct: 240 RAGYEQSLSVLKHAKHSKEGMITKTSIMLGLGESDDEVKEAMADLRAIDVDILTLGQYLQ 299
Query: 288 PTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKN 346
PTPLHLTVKEYVTPEKFDFWK YGESIGFRYVASGPLVRSSYRAGELFVKTMVRE+ KN
Sbjct: 300 PTPLHLTVKEYVTPEKFDFWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVREKTKN 358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463795|ref|XP_002270080.1| PREDICTED: lipoyl synthase, chloroplastic [Vitis vinifera] gi|297742716|emb|CBI35350.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/303 (91%), Positives = 290/303 (95%)
Query: 41 GLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDG 100
G TGRDP+VKKP WLRQ+A QG+RF+EVK+SLS L LNTVC+EAQCPNIGECWNGGGDG
Sbjct: 60 GAFTGRDPNVKKPAWLRQRAAQGERFEEVKQSLSHLNLNTVCQEAQCPNIGECWNGGGDG 119
Query: 101 IATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDD 160
IATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDD
Sbjct: 120 IATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDD 179
Query: 161 IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL 220
+PDGGSGHFARTVKAMKK KP+IMVECLTSDFRGDL AVETLVHSGLDVFAHNIETVKRL
Sbjct: 180 LPDGGSGHFARTVKAMKKFKPEIMVECLTSDFRGDLSAVETLVHSGLDVFAHNIETVKRL 239
Query: 221 QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDIL 280
QRIVRDPRAGYEQSL VLKHAK SK G+ITKSSIMLGLGESDD+LKEAMADLR+IDVDIL
Sbjct: 240 QRIVRDPRAGYEQSLSVLKHAKHSKVGMITKSSIMLGLGESDDELKEAMADLRAIDVDIL 299
Query: 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMV 340
TLGQYLQPTPLHLTVKEYVTPEKF FWK YGESIGFRYVASGPLVRSSYRAGELFVK+MV
Sbjct: 300 TLGQYLQPTPLHLTVKEYVTPEKFAFWKEYGESIGFRYVASGPLVRSSYRAGELFVKSMV 359
Query: 341 RER 343
RER
Sbjct: 360 RER 362
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458724|ref|XP_004147097.1| PREDICTED: lipoyl synthase, chloroplastic-like [Cucumis sativus] gi|449526690|ref|XP_004170346.1| PREDICTED: lipoyl synthase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 278/315 (88%), Positives = 297/315 (94%)
Query: 35 PQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECW 94
P MG +TGRDP VKKP WLRQ+APQG++FQEVK+SLS L LNTVCEEAQCPNIGECW
Sbjct: 83 PYPGGMGPYTGRDPSVKKPGWLRQRAPQGEKFQEVKDSLSRLNLNTVCEEAQCPNIGECW 142
Query: 95 NGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLT 154
NGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEP NTA AIASWGVDYIVLT
Sbjct: 143 NGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPLNTATAIASWGVDYIVLT 202
Query: 155 SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214
SVDRDDIPDGGSGHFA+TVKAMK+ KP+IMVECLTSDFRGDL+AVETLVHSGLDVFAHN+
Sbjct: 203 SVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGLDVFAHNV 262
Query: 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274
ETVKRLQRIVRDPRAGY+QSL VLKHAK SK+G+ITKSSIMLGLGESDD+LKEA+ADLR+
Sbjct: 263 ETVKRLQRIVRDPRAGYDQSLAVLKHAKHSKEGMITKSSIMLGLGESDDELKEALADLRA 322
Query: 275 IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGEL 334
IDVDILTLGQYLQPTPLHLTVKEYVTPEKF FWK YGESIGFRYVASGPLVRSSYRAGEL
Sbjct: 323 IDVDILTLGQYLQPTPLHLTVKEYVTPEKFAFWKEYGESIGFRYVASGPLVRSSYRAGEL 382
Query: 335 FVKTMVRERAKNTVA 349
FV+TMVRER K++ A
Sbjct: 383 FVQTMVRERVKSSTA 397
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126729|ref|XP_002319912.1| predicted protein [Populus trichocarpa] gi|308191445|sp|B9I666.1|LISC1_POPTR RecName: Full=Lipoyl synthase 1, chloroplastic; AltName: Full=Lipoate synthase 1; Short=LS 1; Short=Lip-syn 1; AltName: Full=Lipoate synthase, plastidial 1; Short=LIP1p 1; AltName: Full=Lipoic acid synthase 1; Flags: Precursor gi|222858288|gb|EEE95835.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/375 (77%), Positives = 320/375 (85%), Gaps = 25/375 (6%)
Query: 1 MIHQAIWKPSNSISYSIP-------------SKIRCES----RTDTVKMKPPQRQ----- 38
MI Q++ KPS S+S IP SKIRCES + + K PQ
Sbjct: 1 MIEQSLSKPSFSLSIPIPQPPKSKSSFLCSYSKIRCESVDYPSSSKIDAKHPQISSINSN 60
Query: 39 ---QMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWN 95
+MG +TGRDP+VKKPEWLRQKAPQG+R+ EVKESLS LKLNTVC+EAQCPNIGECWN
Sbjct: 61 GGGKMGSYTGRDPNVKKPEWLRQKAPQGERYDEVKESLSRLKLNTVCQEAQCPNIGECWN 120
Query: 96 GGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTS 155
GGGDGIATATIM+LGDTCTRGCRFCAVKTSRNP PPDPMEP NTA AIASWGVDYIV+TS
Sbjct: 121 GGGDGIATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEPLNTALAIASWGVDYIVITS 180
Query: 156 VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215
VDRDD+PDGGSGHFA+TV+AMK+ KP+IMVECLTSDFRGDL+AV+TLVHSGLDVFAHN+E
Sbjct: 181 VDRDDLPDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSGLDVFAHNVE 240
Query: 216 TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275
TVKRLQRIVRDPRAGYEQSL VLKHAK+SKKG+ITK+SIMLGLGESD+++KEAMADLR+I
Sbjct: 241 TVKRLQRIVRDPRAGYEQSLSVLKHAKISKKGMITKTSIMLGLGESDNEVKEAMADLRAI 300
Query: 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELF 335
VDILT GQYLQPTPLHLTVKEYVTPEKF FWK YGESIGFRYVASGPLVRSSYRAGELF
Sbjct: 301 GVDILTFGQYLQPTPLHLTVKEYVTPEKFAFWKEYGESIGFRYVASGPLVRSSYRAGELF 360
Query: 336 VKTMVRERAKNTVAM 350
VKTMV+E K A+
Sbjct: 361 VKTMVKESVKEAAAI 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534404|ref|XP_003535745.1| PREDICTED: LOW QUALITY PROTEIN: lipoyl synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 289/358 (80%), Positives = 316/358 (88%), Gaps = 18/358 (5%)
Query: 1 MIHQAIWKPSNSISYSIPS-----------KIRCESRTDTVKMKPPQRQQMGLHTGRDPD 49
MI Q+++ P SI +S PS +IRC++ + +V+ K +G HTGRDP+
Sbjct: 1 MIRQSLYNPP-SIPFSTPSMKRHRFSPPSWRIRCDASSVSVEQK-----VVGPHTGRDPN 54
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
VKKPEWLRQKAPQG+RFQE+KESLS LKLNTVCEEAQCPNIGECWNGGGDGIATATIM+L
Sbjct: 55 VKKPEWLRQKAPQGERFQEIKESLSHLKLNTVCEEAQCPNIGECWNGGGDGIATATIMVL 114
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGH 168
GDTCTRGCRFCAVKTSRNP PPDPMEP NTAKAIASWG YIVLTSVDRDD+PDGGSGH
Sbjct: 115 GDTCTRGCRFCAVKTSRNPPPPDPMEPINTAKAIASWGXCGYIVLTSVDRDDLPDGGSGH 174
Query: 169 FARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPR 228
FA+TVKAMK KP+IMVECLTSDFRGDL+AVE LVHSGLDVFAHNIETVKRLQRIVRDPR
Sbjct: 175 FAQTVKAMKNLKPEIMVECLTSDFRGDLKAVEILVHSGLDVFAHNIETVKRLQRIVRDPR 234
Query: 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288
AGYEQSL VLKHAK SK+GLITK+SIMLGLGE+DD++KEAMADLR+IDVDI+T GQYLQP
Sbjct: 235 AGYEQSLSVLKHAKHSKEGLITKTSIMLGLGETDDEVKEAMADLRAIDVDIVTFGQYLQP 294
Query: 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKN 346
TPLHLTVKEYVTPEKF FWK YGESIGF YVASGPLVRSSYRAGELFVKTMVRE+AKN
Sbjct: 295 TPLHLTVKEYVTPEKFAFWKEYGESIGFCYVASGPLVRSSYRAGELFVKTMVREKAKN 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415808|ref|NP_568196.1| lipoyl synthase [Arabidopsis thaliana] gi|308191548|sp|Q8LEE8.2|LISC_ARATH RecName: Full=Lipoyl synthase, chloroplastic; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoate synthase, plastidial; Short=LIP1p; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|20373023|dbj|BAB91180.1| lipoic acid synthase [Arabidopsis thaliana] gi|98960967|gb|ABF58967.1| At5g08415 [Arabidopsis thaliana] gi|332003915|gb|AED91298.1| lipoyl synthase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 290/393 (73%), Positives = 319/393 (81%), Gaps = 44/393 (11%)
Query: 1 MIHQAIWKPSNSISYS-------------IPSKIRCES-------RTDTVKMK------- 33
M H +I KP+ SIS S + +IRCES RT V +
Sbjct: 2 MHHCSITKPTFSISISTQKLHHHSSKFLNLGFRIRCESGDVSSPLRTKAVSLSSEMEDSS 61
Query: 34 -----------------PPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSL 76
P +MG TGRDP+VKKP WLRQKAPQG+RFQEVKESLS L
Sbjct: 62 SLKKSLMELEGKKSEPYPGGMPKMGPFTGRDPNVKKPAWLRQKAPQGERFQEVKESLSRL 121
Query: 77 KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEP 136
LNTVCEEAQCPNIGECWNGGGDG+ATATIM+LGDTCTRGCRFCAVKTSRNP PPDPMEP
Sbjct: 122 NLNTVCEEAQCPNIGECWNGGGDGVATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEP 181
Query: 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL 196
ENTAKAIASWGVDYIV+TSVDRDDIPDGGSGHFA+TVKAMK+ KPDIM+ECLTSDFRGDL
Sbjct: 182 ENTAKAIASWGVDYIVITSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDL 241
Query: 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256
AV+TLVHSGLDVFAHN+ETVKRLQR+VRDPRAGYEQS+ VLKHAK+SK G+ITK+SIML
Sbjct: 242 EAVDTLVHSGLDVFAHNVETVKRLQRLVRDPRAGYEQSMSVLKHAKISKPGMITKTSIML 301
Query: 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGF 316
GLGE+D++LKEAMADLR+IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWK YGESIGF
Sbjct: 302 GLGETDEELKEAMADLRAIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKTYGESIGF 361
Query: 317 RYVASGPLVRSSYRAGELFVKTMVRERAKNTVA 349
RYVASGPLVRSSYRAGELFVKTMV+E +++
Sbjct: 362 RYVASGPLVRSSYRAGELFVKTMVKESYSKSLS 394
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21553591|gb|AAM62684.1| lipoic acid synthase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 290/393 (73%), Positives = 319/393 (81%), Gaps = 44/393 (11%)
Query: 1 MIHQAIWKPSNSISYS-------------IPSKIRCES-------RTDTVKMK------- 33
M H +I KP+ SIS S + +IRCES RT V +
Sbjct: 1 MHHCSITKPTFSISISTQKLHHHSSKFLNLGFRIRCESGDVSSPLRTKAVSLSSEMEDSS 60
Query: 34 -----------------PPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSL 76
P +MG TGRDP+VKKP WLRQKAPQG+RFQEVKESLS L
Sbjct: 61 SLKKSLMELEGKKSEPYPGGMPKMGPFTGRDPNVKKPAWLRQKAPQGERFQEVKESLSRL 120
Query: 77 KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEP 136
LNTVCEEAQCPNIGECWNGGGDG+ATATIM+LGDTCTRGCRFCAVKTSRNP PPDPMEP
Sbjct: 121 NLNTVCEEAQCPNIGECWNGGGDGVATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEP 180
Query: 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL 196
ENTAKAIASWGVDYIV+TSVDRDDIPDGGSGHFA+TVKAMK+ KPDIM+ECLTSDFRGDL
Sbjct: 181 ENTAKAIASWGVDYIVITSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDL 240
Query: 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256
AV+TLVHSGLDVFAHN+ETVKRLQR+VRDPRAGYEQS+ VLKHAK+SK G+ITK+SIML
Sbjct: 241 EAVDTLVHSGLDVFAHNVETVKRLQRLVRDPRAGYEQSMSVLKHAKISKPGMITKTSIML 300
Query: 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGF 316
GLGE+D++LKEAMADLR+IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWK YGESIGF
Sbjct: 301 GLGETDEELKEAMADLRAIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKTYGESIGF 360
Query: 317 RYVASGPLVRSSYRAGELFVKTMVRERAKNTVA 349
RYVASGPLVRSSYRAGELFVKTMV+E +++
Sbjct: 361 RYVASGPLVRSSYRAGELFVKTMVKESYSKSLS 393
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127031|ref|XP_002329366.1| predicted protein [Populus trichocarpa] gi|308191448|sp|B9N2B0.1|LISC2_POPTR RecName: Full=Lipoyl synthase 2, chloroplastic; AltName: Full=Lipoate synthase 2; Short=LS 2; Short=Lip-syn 2; AltName: Full=Lipoate synthase, plastidial 2; Short=LIP1p 2; AltName: Full=Lipoic acid synthase 2; Flags: Precursor gi|222870416|gb|EEF07547.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/396 (71%), Positives = 316/396 (79%), Gaps = 46/396 (11%)
Query: 1 MIHQAIWKPSNSISYSIP-------------SKIRCES----RTDTVKMKPPQRQ----- 38
MI Q++ KPS S+S IP SKIRCES + K PQ
Sbjct: 1 MIEQSLSKPSFSLSIPIPKAPKSKSSFFCSYSKIRCESVDYPSLTKIDAKHPQNSTTINN 60
Query: 39 ------------------------QMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLS 74
+MG +TGRD + KKPEWLRQ+APQG+RF+EVKES+S
Sbjct: 61 GSSSSASVDLKNNEKGPYPYPGGGKMGPYTGRDLNEKKPEWLRQRAPQGERFEEVKESIS 120
Query: 75 SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPM 134
L LNTVC+EAQCPNIGECWNGGGDGIATATIM+LGDTCTRGCRFCAVKTSR P PPDPM
Sbjct: 121 RLNLNTVCQEAQCPNIGECWNGGGDGIATATIMVLGDTCTRGCRFCAVKTSRTPPPPDPM 180
Query: 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG 194
EP NTA AIASWGVDYIV+TSVDRDD+ DGGSGHFA+TV+AMK+ KP+IMVECLTSDFRG
Sbjct: 181 EPLNTALAIASWGVDYIVITSVDRDDLSDGGSGHFAQTVRAMKELKPEIMVECLTSDFRG 240
Query: 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254
DL+AV+TLVHSGLDVFAHN+ETVKRLQRIVRDPRAGYEQSL VLKHAK+SKKG+ITK+SI
Sbjct: 241 DLKAVDTLVHSGLDVFAHNVETVKRLQRIVRDPRAGYEQSLSVLKHAKVSKKGMITKTSI 300
Query: 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI 314
MLGLGE+DD++KEAM DLR+IDVDILT GQYLQPTPLHLTVKEYV+PEKF +WK YGESI
Sbjct: 301 MLGLGETDDEVKEAMTDLRAIDVDILTFGQYLQPTPLHLTVKEYVSPEKFAYWKEYGESI 360
Query: 315 GFRYVASGPLVRSSYRAGELFVKTMVRERAKNTVAM 350
GFRYVASGPLVRSSYRAGELFVKTMV+E AK A+
Sbjct: 361 GFRYVASGPLVRSSYRAGELFVKTMVKESAKEAAAI 396
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302821689|ref|XP_002992506.1| hypothetical protein SELMODRAFT_186771 [Selaginella moellendorffii] gi|300139708|gb|EFJ06444.1| hypothetical protein SELMODRAFT_186771 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/346 (72%), Positives = 289/346 (83%), Gaps = 9/346 (2%)
Query: 5 AIWK---PSNSISYSIPSKIRCESRTDTVKMKPPQRQ-QMGLHTGRDPDVKKPEWLRQKA 60
A+W P+ S+ + + ES + TV ++ R +G HTGRD VKKPEWLRQ+A
Sbjct: 4 ALWSSIAPARSLPIARCCATQEESSSATVSVRERSRSASLGPHTGRDLSVKKPEWLRQRA 63
Query: 61 PQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGG-GDG---IATATIMLLGDTCTRG 116
QG R+ E+KESL +LKL+TVCEEA+CPNIGECWNGG GDG I TATIMLLGDTCTRG
Sbjct: 64 AQGDRYSELKESLGALKLHTVCEEARCPNIGECWNGGSGDGAHGIGTATIMLLGDTCTRG 123
Query: 117 CRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176
CRFCAV TSRNPAPPDP+EPENTAKAIASWGV YIVLTSVDRDD+PDGGSGHFARTV+ +
Sbjct: 124 CRFCAVATSRNPAPPDPLEPENTAKAIASWGVGYIVLTSVDRDDMPDGGSGHFARTVRTL 183
Query: 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLE 236
K+ KP+I+VECL SDFRGD AV T+ GLDVFAHNIETVKRLQRIVRDPRAGYEQSL
Sbjct: 184 KELKPEILVECLVSDFRGDPEAVTTVATCGLDVFAHNIETVKRLQRIVRDPRAGYEQSLG 243
Query: 237 VLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVK 296
VLK AK SK GLITKSSIMLGLGE DD++K+A+ DL++ VDI+T GQYLQPTP+HLTVK
Sbjct: 244 VLKLAKASKDGLITKSSIMLGLGEKDDEIKQALDDLKAAGVDIVTFGQYLQPTPVHLTVK 303
Query: 297 EYVTPEKFDFWKAYGES-IGFRYVASGPLVRSSYRAGELFVKTMVR 341
EY+TPEKFDFWK YGES +GFRYVASGPLVRSSYRAGE F+++M+R
Sbjct: 304 EYITPEKFDFWKEYGESVVGFRYVASGPLVRSSYRAGEFFLESMIR 349
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| TAIR|locus:505006586 | 394 | AT5G08415 [Arabidopsis thalian | 0.880 | 0.784 | 0.883 | 2.9e-151 | |
| UNIPROTKB|I3LGA8 | 372 | LIAS "Lipoyl synthase, mitocho | 0.837 | 0.790 | 0.636 | 2.5e-104 | |
| RGD|1307270 | 373 | Lias "lipoic acid synthetase" | 0.837 | 0.788 | 0.632 | 2.5e-104 | |
| UNIPROTKB|E2R257 | 373 | LIAS "Lipoyl synthase, mitocho | 0.849 | 0.798 | 0.627 | 3.2e-104 | |
| UNIPROTKB|Q5BIP7 | 372 | LIAS "Lipoyl synthase, mitocho | 0.837 | 0.790 | 0.629 | 1.4e-103 | |
| MGI|MGI:1934604 | 373 | Lias "lipoic acid synthetase" | 0.837 | 0.788 | 0.625 | 7.7e-103 | |
| ZFIN|ZDB-GENE-040426-1528 | 399 | lias "lipoic acid synthetase" | 0.854 | 0.751 | 0.621 | 7.7e-103 | |
| UNIPROTKB|F1NEN8 | 339 | LIAS "Uncharacterized protein" | 0.851 | 0.882 | 0.618 | 1.6e-102 | |
| UNIPROTKB|O43766 | 372 | LIAS "Lipoyl synthase, mitocho | 0.837 | 0.790 | 0.622 | 2.6e-102 | |
| WB|WBGene00010809 | 354 | M01F1.3 [Caenorhabditis elegan | 0.866 | 0.858 | 0.590 | 7.1e-100 |
| TAIR|locus:505006586 AT5G08415 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
Identities = 273/309 (88%), Positives = 294/309 (95%)
Query: 34 PPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGEC 93
P +MG TGRDP+VKKP WLRQKAPQG+RFQEVKESLS L LNTVCEEAQCPNIGEC
Sbjct: 79 PGGMPKMGPFTGRDPNVKKPAWLRQKAPQGERFQEVKESLSRLNLNTVCEEAQCPNIGEC 138
Query: 94 WNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVL 153
WNGGGDG+ATATIM+LGDTCTRGCRFCAVKTSRNP PPDPMEPENTAKAIASWGVDYIV+
Sbjct: 139 WNGGGDGVATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEPENTAKAIASWGVDYIVI 198
Query: 154 TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213
TSVDRDDIPDGGSGHFA+TVKAMK+ KPDIM+ECLTSDFRGDL AV+TLVHSGLDVFAHN
Sbjct: 199 TSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDLEAVDTLVHSGLDVFAHN 258
Query: 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273
+ETVKRLQR+VRDPRAGYEQS+ VLKHAK+SK G+ITK+SIMLGLGE+D++LKEAMADLR
Sbjct: 259 VETVKRLQRLVRDPRAGYEQSMSVLKHAKISKPGMITKTSIMLGLGETDEELKEAMADLR 318
Query: 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGE 333
+IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWK YGESIGFRYVASGPLVRSSYRAGE
Sbjct: 319 AIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKTYGESIGFRYVASGPLVRSSYRAGE 378
Query: 334 LFVKTMVRE 342
LFVKTMV+E
Sbjct: 379 LFVKTMVKE 387
|
|
| UNIPROTKB|I3LGA8 LIAS "Lipoyl synthase, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 187/294 (63%), Positives = 234/294 (79%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ + P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 74 LRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLM 133
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT+RNP P D EP NTAKAIA WG+DY+VLTSVDRDD+PDGG+ HF
Sbjct: 134 GDTCTRGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHF 193
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ P I+VECLT DFRGDL+AVE + SGLDV+AHN+ETV LQR VRDPRA
Sbjct: 194 AKTVSYLKERNPKILVECLTPDFRGDLKAVEKVAVSGLDVYAHNVETVPELQRKVRDPRA 253
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
G++QSL VLKHAK + +I+K+SIMLGLGE+D+ + M LR DVD LTLGQY+QPT
Sbjct: 254 GFDQSLRVLKHAKEVRPDVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPT 313
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343
HL V+EY+TPEKF +W+ G +GF Y ASGPLVRSSY+AGE F+K +V +R
Sbjct: 314 KRHLKVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLVAKR 367
|
|
| RGD|1307270 Lias "lipoic acid synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 186/294 (63%), Positives = 234/294 (79%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ K P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 73 LRLPPWLKTKIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLM 132
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT+RNP P DP EP+NTA+AIA WG+DY+VLTSVDRDD+ DGG+ H
Sbjct: 133 GDTCTRGCRFCSVKTARNPPPLDPSEPDNTARAIAEWGLDYVVLTSVDRDDVVDGGAEHI 192
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ P I+VECLT DFRGDLRAVE + SGLDV+AHN+ETV LQR VRDPRA
Sbjct: 193 AKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRA 252
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
++QSL VLKHAK + +++K+SIMLGLGE+D+ + M LR+ DVD LTLGQY+QPT
Sbjct: 253 NFDQSLRVLKHAKEVQPDVVSKTSIMLGLGETDEQVYATMKALRAADVDCLTLGQYMQPT 312
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343
HL V+EYVTPEKF +W+ G +GF Y ASGPLVRSSY+AGE F+K +V +R
Sbjct: 313 KRHLKVEEYVTPEKFKYWEEVGNELGFHYTASGPLVRSSYKAGEFFLKNLVAKR 366
|
|
| UNIPROTKB|E2R257 LIAS "Lipoyl synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 187/298 (62%), Positives = 235/298 (78%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ + P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 74 LRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLM 133
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT+RNP P D EP NTAKAIA WG+DY+VLTSVDRDD+PDGG+ HF
Sbjct: 134 GDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHF 193
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ P I+VECLT DFRGDL+A+E + SGLDV+AHNIETV LQR VRDPRA
Sbjct: 194 AKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNIETVPELQRKVRDPRA 253
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
+ QSL VLKHAK + +I+K+SIMLGLGE+D+ + M LR DVD LTLGQY+QPT
Sbjct: 254 NFSQSLRVLKHAKEVRPDVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPT 313
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNT 347
HL V+EY+TPEKF +W+ G +GF Y ASGPLVRSSY+AGE F+K +V +R K++
Sbjct: 314 KRHLKVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLVAKRKKSS 371
|
|
| UNIPROTKB|Q5BIP7 LIAS "Lipoyl synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 185/294 (62%), Positives = 233/294 (79%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ + P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 74 LRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLM 133
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT+RNP P D EP NTAKAIA WG+DY+VLTSVDRDD+PDGG+ HF
Sbjct: 134 GDTCTRGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHF 193
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ P I+VECLT DFRGDL+A+E + SGLDV+AHN+ETV LQR VRDPRA
Sbjct: 194 AKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQRKVRDPRA 253
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
++QSL VLKHAK + +I+K+SIMLGLGE+D+ + M LR DVD LTLGQY+QPT
Sbjct: 254 NFDQSLRVLKHAKEVRPDVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPT 313
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343
HL V+EY+TPEKF +W+ G +GF Y ASGPLVRSSY+AGE F+K +V +R
Sbjct: 314 KRHLKVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLVAKR 367
|
|
| MGI|MGI:1934604 Lias "lipoic acid synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 184/294 (62%), Positives = 232/294 (78%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ K P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 73 LRLPPWLKTKIPMGKNYNKLKNTLRNLSLHTVCEEARCPNIGECWGGGEYATATATIMLM 132
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT+RNP P D EP+NTAKAIA WG+DY+VLTSVDRDD+ DGG+ H
Sbjct: 133 GDTCTRGCRFCSVKTARNPPPLDANEPDNTAKAIAEWGLDYVVLTSVDRDDVADGGAEHI 192
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ P I+VECLT DFRGDLRAVE + SGLDV+AHN+ETV LQR VRDPRA
Sbjct: 193 AKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRA 252
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
++QSL VL+HAK + +++K+SIMLGLGE+D+ + + LR+ DVD LTLGQY+QPT
Sbjct: 253 NFDQSLRVLRHAKEVQPDVVSKTSIMLGLGETDEQVYATLKALRAADVDCLTLGQYMQPT 312
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343
HL V+EYVTPEKF +W+ G +GF Y ASGPLVRSSY+AGE F+K +V R
Sbjct: 313 KRHLKVEEYVTPEKFKYWEKVGNELGFLYTASGPLVRSSYKAGEFFLKNLVARR 366
|
|
| ZFIN|ZDB-GENE-040426-1528 lias "lipoic acid synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 187/301 (62%), Positives = 236/301 (78%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ + P G+ + ++K +L L L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 96 LRLPPWLKTEIPIGKNYNKLKNTLRELNLHTVCEEARCPNIGECWGGGEYATATATIMLM 155
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT+R P P DP EP NTAKAIA+WG+DY+VLTSVDRDDIPDGG+ HF
Sbjct: 156 GDTCTRGCRFCSVKTARRPPPLDPDEPYNTAKAIAAWGLDYVVLTSVDRDDIPDGGAEHF 215
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ I+VECLT DFRGDL AVE + SGLDV+AHN+ETV+ LQR VRDPRA
Sbjct: 216 AKTVSNIKERNSKILVECLTPDFRGDLAAVEKIALSGLDVYAHNVETVRELQRHVRDPRA 275
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
++QSL VL+HAK K ++TK+SIMLGLGE+D ++ + +LR VD LTLGQY+QPT
Sbjct: 276 NFDQSLSVLRHAKKVKSSVLTKTSIMLGLGETDAQIQATLTELRDSGVDCLTLGQYMQPT 335
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER-AKNTV 348
HL V+EYVTPEKF FW+ G+ +GF Y ASGPLVRSSY+AGE F+K ++ +R + T
Sbjct: 336 KRHLKVEEYVTPEKFAFWEKVGQEMGFIYTASGPLVRSSYKAGEFFLKNLLEKRKTEETT 395
Query: 349 A 349
A
Sbjct: 396 A 396
|
|
| UNIPROTKB|F1NEN8 LIAS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 185/299 (61%), Positives = 232/299 (77%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ + P G+ + ++K +L SL L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 41 LRLPPWLKTEIPMGKNYNKLKNTLRSLNLHTVCEEARCPNIGECWGGGEYATATATIMLM 100
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT++NP P DP EP NTAKAIA WG+DY+VLTSVDRDD+PDGG+ HF
Sbjct: 101 GDTCTRGCRFCSVKTAKNPPPLDPEEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHF 160
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ I+VECLT DFRGDL AVE + SGLDV+AHN+ETV LQR VRDPRA
Sbjct: 161 AKTVSHLKERNSKIVVECLTPDFRGDLNAVEKVALSGLDVYAHNVETVPELQRKVRDPRA 220
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
+EQS+ VLKHAK + +I+K+S+MLGLGE+D+ + M LR VD LTLGQY+QPT
Sbjct: 221 NFEQSVRVLKHAKAVQPRVISKTSLMLGLGETDEQVLATMKLLREAGVDCLTLGQYMQPT 280
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNTV 348
HL V+EYVTPEKF +W+ G +GF Y ASGPLVRSSY+AGE F+K +V +R +
Sbjct: 281 KRHLKVEEYVTPEKFKYWEKVGNDLGFHYTASGPLVRSSYKAGEFFLKNLVEKRKTKVI 339
|
|
| UNIPROTKB|O43766 LIAS "Lipoyl synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
Identities = 183/294 (62%), Positives = 231/294 (78%)
Query: 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL 109
++ P WL+ + P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG ATATIML+
Sbjct: 74 LRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLM 133
Query: 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF 169
GDTCTRGCRFC+VKT+RNP P D EP NTAKAIA WG+DY+VLTSVDRDD+PDGG+ H
Sbjct: 134 GDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHI 193
Query: 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229
A+TV +K++ P I+VECLT DFRGDL+A+E + SGLDV+AHN+ETV LQ VRDPRA
Sbjct: 194 AKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQSKVRDPRA 253
Query: 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289
++QSL VLKHAK + +I+K+SIMLGLGE+D+ + M LR DVD LTLGQY+QPT
Sbjct: 254 NFDQSLRVLKHAKKVQPDVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPT 313
Query: 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343
HL V+EY+TPEKF +W+ G +GF Y ASGPLVRSSY+AGE F+K +V +R
Sbjct: 314 RRHLKVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLVAKR 367
|
|
| WB|WBGene00010809 M01F1.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 182/308 (59%), Positives = 240/308 (77%)
Query: 39 QMGLHTGRDPDVKKPEWLRQKA--P-QGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWN 95
++ L G D ++ P WL+++ P + + +K+ L LKL TVC+EA+CPN+GECW
Sbjct: 46 KLKLEKG-DRRLRLPPWLKKEKILPSENENVSRLKKQLKHLKLATVCQEARCPNLGECWG 104
Query: 96 GGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTS 155
G D +ATATIML+GDTCTRGC+FC+VKT+R P P DPMEPENT+ A+ASWGV+YIVLTS
Sbjct: 105 GSDDSLATATIMLMGDTCTRGCKFCSVKTARAPPPLDPMEPENTSTAVASWGVEYIVLTS 164
Query: 156 VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215
VDRDD+PDGG+ H +TV+ MK +KP++++ECL DF GD +VE + SGLDV+AHNIE
Sbjct: 165 VDRDDLPDGGADHLRKTVQLMKLKKPELLIECLLPDFAGDKISVEKMATSGLDVYAHNIE 224
Query: 216 TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275
TV+RL VRDPRA Y QSL+ L++AK LITK+SIMLGLGE++D++K+ +ADLR+
Sbjct: 225 TVERLTPWVRDPRAKYRQSLDALRYAKEVSPKLITKTSIMLGLGEAEDEIKQCLADLRAS 284
Query: 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELF 335
+VD++T GQY+QPT HL VKE+VTPEKFD W Y + +GF YVASGPLVRSSY+AGE +
Sbjct: 285 NVDVVTFGQYMQPTKRHLLVKEWVTPEKFDQWAEYSKKLGFLYVASGPLVRSSYKAGEFY 344
Query: 336 VKTMVRER 343
+K ++R R
Sbjct: 345 LKNVLRNR 352
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B4MXR6 | LIAS_DROWI | 2, ., 8, ., 1, ., 8 | 0.6066 | 0.8547 | 0.8064 | N/A | no |
| C5M276 | LIPA_CANTT | 2, ., 8, ., 1, ., 8 | 0.5784 | 0.8689 | 0.8090 | N/A | no |
| B8AA76 | LISC1_ORYSI | 2, ., 8, ., 1, ., 8 | 0.7088 | 0.9430 | 0.8945 | N/A | no |
| B3M996 | LIAS_DROAN | 2, ., 8, ., 1, ., 8 | 0.6079 | 0.8575 | 0.8005 | N/A | no |
| B4IAA7 | LIAS_DROSE | 2, ., 8, ., 1, ., 8 | 0.5922 | 0.8746 | 0.8143 | N/A | no |
| B6TN12 | LISC1_MAIZE | 2, ., 8, ., 1, ., 8 | 0.7459 | 0.8689 | 0.8448 | N/A | no |
| Q5XIH4 | LIAS_RAT | 2, ., 8, ., 1, ., 8 | 0.6326 | 0.8376 | 0.7882 | yes | no |
| B8B016 | LISC2_ORYSI | 2, ., 8, ., 1, ., 8 | 0.7475 | 0.8632 | 0.7890 | N/A | no |
| C0PN26 | LISC2_MAIZE | 2, ., 8, ., 1, ., 8 | 0.7363 | 0.8689 | 0.8310 | N/A | no |
| Q6FPY0 | LIPA_CANGA | 2, ., 8, ., 1, ., 8 | 0.5794 | 0.8603 | 0.7783 | yes | no |
| P0CH68 | LIPA_CANAW | 2, ., 8, ., 1, ., 8 | 0.5819 | 0.8803 | 0.8005 | N/A | no |
| B3SBB5 | LIAS_TRIAD | 2, ., 8, ., 1, ., 8 | 0.6313 | 0.8319 | 0.8342 | N/A | no |
| Q6L534 | LISC2_ORYSJ | 2, ., 8, ., 1, ., 8 | 0.7443 | 0.8632 | 0.7890 | yes | no |
| B9I666 | LISC1_POPTR | 2, ., 8, ., 1, ., 8 | 0.7733 | 0.9971 | 0.9308 | yes | no |
| B5RUV1 | LIPA_DEBHA | 2, ., 8, ., 1, ., 8 | 0.5718 | 0.8689 | 0.7721 | yes | no |
| P0CH67 | LIPA_CANAL | 2, ., 8, ., 1, ., 8 | 0.5819 | 0.8803 | 0.8005 | N/A | no |
| B9RX57 | LISC_RICCO | 2, ., 8, ., 1, ., 8 | 0.8021 | 0.9971 | 0.9615 | N/A | no |
| Q8LEE8 | LISC_ARATH | 2, ., 8, ., 1, ., 8 | 0.7379 | 0.9943 | 0.8857 | yes | no |
| Q99M04 | LIAS_MOUSE | 2, ., 8, ., 1, ., 8 | 0.6258 | 0.8376 | 0.7882 | yes | no |
| Q74ZH6 | LIPA_ASHGO | 2, ., 8, ., 1, ., 8 | 0.5972 | 0.8319 | 0.7913 | yes | no |
| Q5BIP7 | LIAS_BOVIN | 2, ., 8, ., 1, ., 8 | 0.6292 | 0.8376 | 0.7903 | yes | no |
| Q21452 | LIAS_CAEEL | 2, ., 8, ., 1, ., 8 | 0.5876 | 0.8660 | 0.8587 | yes | no |
| B9WFS9 | LIPA_CANDC | 2, ., 8, ., 1, ., 8 | 0.5852 | 0.8803 | 0.8005 | yes | no |
| C5XKZ1 | LISC_SORBI | 2, ., 8, ., 1, ., 8 | 0.7 | 0.9373 | 0.8940 | N/A | no |
| Q6C6C6 | LIPA_YARLI | 2, ., 8, ., 1, ., 8 | 0.5945 | 0.8290 | 0.8290 | yes | no |
| A3GGJ5 | LIPA_PICST | 2, ., 8, ., 1, ., 8 | 0.5849 | 0.8689 | 0.7663 | yes | no |
| Q8IDQ0 | LIPA_PLAF7 | 2, ., 8, ., 1, ., 8 | 0.5819 | 0.8376 | 0.7084 | yes | no |
| Q6PHG4 | LIAS_DANRE | 2, ., 8, ., 1, ., 8 | 0.6292 | 0.8376 | 0.7368 | yes | no |
| Q5ZAQ2 | LISC1_ORYSJ | 2, ., 8, ., 1, ., 8 | 0.7088 | 0.9430 | 0.8945 | no | no |
| A4RW69 | LISC_OSTLU | 2, ., 8, ., 1, ., 8 | 0.7043 | 0.8461 | 0.9166 | yes | no |
| C4QYF2 | LIPA_PICPG | 2, ., 8, ., 1, ., 8 | 0.5723 | 0.8632 | 0.7266 | yes | no |
| D0NP70 | LIPA_PHYIT | 2, ., 8, ., 1, ., 8 | 0.5691 | 0.8803 | 0.8067 | N/A | no |
| Q7JQW6 | LIAS_DROME | 2, ., 8, ., 1, ., 8 | 0.5980 | 0.8575 | 0.7984 | yes | no |
| B4J3F3 | LIAS_DROGR | 2, ., 8, ., 1, ., 8 | 0.5960 | 0.8603 | 0.8296 | N/A | no |
| B4KYY0 | LIAS_DROMO | 2, ., 8, ., 1, ., 8 | 0.5993 | 0.8603 | 0.8296 | N/A | no |
| O43766 | LIAS_HUMAN | 2, ., 8, ., 1, ., 8 | 0.6224 | 0.8376 | 0.7903 | yes | no |
| Q2LYK1 | LIAS_DROPS | 2, ., 8, ., 1, ., 8 | 0.6125 | 0.8603 | 0.8074 | yes | no |
| Q6GQ48 | LIAS_XENLA | 2, ., 8, ., 1, ., 8 | 0.6020 | 0.8518 | 0.8037 | N/A | no |
| C3Y3G4 | LIAS_BRAFL | 2, ., 8, ., 1, ., 8 | 0.6195 | 0.8461 | 0.7898 | yes | no |
| B9N2B0 | LISC2_POPTR | 2, ., 8, ., 1, ., 8 | 0.7146 | 0.9971 | 0.8816 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.8 | 0.994 |
| 3rd Layer | 2.8.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 351 | |||
| PLN02428 | 349 | PLN02428, PLN02428, lipoic acid synthase | 0.0 | |
| PRK05481 | 289 | PRK05481, PRK05481, lipoyl synthase; Provisional | 1e-176 | |
| PTZ00413 | 398 | PTZ00413, PTZ00413, lipoate synthase; Provisional | 1e-163 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 1e-162 | |
| TIGR00510 | 302 | TIGR00510, lipA, lipoate synthase | 1e-137 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 1e-131 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 4e-24 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 1e-18 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 7e-09 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 2e-07 | |
| PRK06256 | 336 | PRK06256, PRK06256, biotin synthase; Validated | 6e-06 | |
| TIGR00433 | 296 | TIGR00433, bioB, biotin synthase | 1e-05 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 6e-04 | |
| TIGR04043 | 354 | TIGR04043, rSAM_MSMEG_0568, radical SAM protein, M | 0.003 |
| >gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase | Back alignment and domain information |
|---|
Score = 632 bits (1631), Expect = 0.0
Identities = 223/303 (73%), Positives = 261/303 (86%)
Query: 44 TGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIAT 103
GRD + KP+WLRQ+AP G+++ E+KE L LKLNTVCEEAQCPNIGECWNGGG G AT
Sbjct: 43 YGRDKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTAT 102
Query: 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD 163
ATIM+LGDTCTRGCRFCAVKTSR P PPDP EPEN A+AIASWGVDY+VLTSVDRDD+PD
Sbjct: 103 ATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPD 162
Query: 164 GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRI 223
GGSGHFA TV+ +K+ KP+I+VE L DFRGDL AVET+ SGLDVFAHNIETV+RLQRI
Sbjct: 163 GGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRI 222
Query: 224 VRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283
VRDPRAGY+QSL+VLKHAK SK GL+TK+SIMLGLGE+D+++ + M DLR+ VD++T G
Sbjct: 223 VRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFG 282
Query: 284 QYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343
QYL+PT HL VKEYVTPEKF+FW+ YGE +GFRYVASGPLVRSSY+AGE F+K+M+RE
Sbjct: 283 QYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYKAGEFFIKSMIRED 342
Query: 344 AKN 346
Sbjct: 343 RAK 345
|
Length = 349 |
| >gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 488 bits (1260), Expect = e-176
Identities = 158/291 (54%), Positives = 204/291 (70%), Gaps = 7/291 (2%)
Query: 51 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLG 110
+KP+WLR K P G+ + E+K+ L L L+TVCEEA CPNIGECW+ G TAT M+LG
Sbjct: 6 RKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILG 60
Query: 111 DTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFA 170
D CTR C FC V T R P P DP EPE A+A+A G+ Y+V+TSVDRDD+PDGG+ HFA
Sbjct: 61 DICTRRCPFCDVATGR-PLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFA 119
Query: 171 RTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAG 230
T++A+++ P +E L DFRG + A+ T++ + DVF HN+ETV RL + VR P A
Sbjct: 120 ETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPRLYKRVR-PGAD 178
Query: 231 YEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290
YE+SLE+LK AK G+ TKS +M+GLGE+D+++ E M DLR+ VDILT+GQYLQP+
Sbjct: 179 YERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSR 238
Query: 291 LHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVR 341
HL V+ YVTPE+FD +K +GF +VASGPLVRSSY A E V
Sbjct: 239 KHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQAAGAEVA 289
|
Length = 289 |
| >gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 462 bits (1190), Expect = e-163
Identities = 166/301 (55%), Positives = 218/301 (72%), Gaps = 6/301 (1%)
Query: 51 KKPEWLRQKAPQG----QRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGD-GIATAT 105
P W + K P+G RF ++ S+ KL+TVCEEA+CPNIGECW GG + G ATAT
Sbjct: 92 PLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATAT 151
Query: 106 IMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG 165
IM++GD CTRGCRFC+VKTSR P P DP EPE AKA+A GVDYIV+T VDRDD+PDGG
Sbjct: 152 IMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGG 211
Query: 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR 225
+ H AR V+ +K+ P++++E L DF GDL++VE L +S L V+AHNIE V+R+ VR
Sbjct: 212 ASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVR 271
Query: 226 DPRAGYEQSLEVLKHAKLSKKG-LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284
D RA Y QSL+VL+H K G ++TKSSIMLGLGE+++++++ + DLR+ V +TLGQ
Sbjct: 272 DRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQ 331
Query: 285 YLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERA 344
YLQPT L V Y P++F+ W+ +GF Y ASGPLVRSSYRAGE ++K +V++R
Sbjct: 332 YLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAGEYYIKNLVKQRR 391
Query: 345 K 345
K
Sbjct: 392 K 392
|
Length = 398 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 454 bits (1171), Expect = e-162
Identities = 162/291 (55%), Positives = 206/291 (70%), Gaps = 7/291 (2%)
Query: 51 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLG 110
+KPEWL+ KAP G R+QE+KE L L+TVCEEA CPNIGECW+ G TAT M+LG
Sbjct: 23 RKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILG 77
Query: 111 DTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFA 170
D CTR CRFC VKT R P P DP EPE A+A+ G+ Y+V+TSVDRDD+PDGG+ HFA
Sbjct: 78 DICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFA 136
Query: 171 RTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAG 230
++A+++ P +E LT DFRG+ A+E + +G DVF HN+ETV RL VR P A
Sbjct: 137 ECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVR-PGAT 195
Query: 231 YEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290
YE+SL +L+ AK + TKS +M+GLGE+D+++ E M DLRS VDILT+GQYLQP+
Sbjct: 196 YERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSR 255
Query: 291 LHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVR 341
HL V+ YVTPE+FD + E +GF +VASGPLVRSSY A E F + V+
Sbjct: 256 KHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEAEVK 306
|
Length = 306 |
| >gnl|CDD|233002 TIGR00510, lipA, lipoate synthase | Back alignment and domain information |
|---|
Score = 391 bits (1007), Expect = e-137
Identities = 139/292 (47%), Positives = 197/292 (67%), Gaps = 6/292 (2%)
Query: 51 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLG 110
+KPEWL+ K P G ++K ++ + L+TVCEEA CPN+ ECWN G TAT M+LG
Sbjct: 16 RKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILG 70
Query: 111 DTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFA 170
D CTR C FC V RNP PPDP EP A+ I G+ Y+V+TSVDRDD+ DGG+ H A
Sbjct: 71 DICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLA 130
Query: 171 RTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAG 230
++A++++ P+I +E L DFRG++ A++ L+ + DV+ HN+ETV+RL VR P A
Sbjct: 131 ECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVR-PGAT 189
Query: 231 YEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290
Y SL++L+ AK L TKS IM+GLGE+++++K+ + DLR V ++TLGQYL+P+
Sbjct: 190 YRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSR 249
Query: 291 LHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRE 342
HL VK YV+PE+FD++++ +GF + A GP VRSSY A LF + +
Sbjct: 250 RHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGRLVK 301
|
This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 375 bits (964), Expect = e-131
Identities = 134/297 (45%), Positives = 188/297 (63%), Gaps = 8/297 (2%)
Query: 39 QMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGG 98
+ + R P + PEWLR + + V+ + +L+T+CEEA+CPN GEC+ G
Sbjct: 1 RSRDKSARIPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG- 59
Query: 99 DGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDR 158
TAT +++G CTR C FC V R P P DP EPE A+A+A+ G+ Y+VLTSV R
Sbjct: 60 ----TATFLIMGSICTRRCAFCQVDKGR-PMPLDPDEPERVAEAVAALGLRYVVLTSVAR 114
Query: 159 DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETV 217
DD+PDGG+ HF T+ A++ + P +E LT DF G + T++ + DVF HN+ETV
Sbjct: 115 DDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETV 174
Query: 218 KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDV 277
RLQ+ VR A Y++SL++L AK + TKS +MLGLGE++D++ E + DLR++
Sbjct: 175 PRLQKAVR-RGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGC 233
Query: 278 DILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGEL 334
D LT+GQYL+P+ HL V+ Y TPE+F+ +GF +V SGPLVRSSY AGE
Sbjct: 234 DRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGEQ 290
|
Length = 290 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 4e-24
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPE---NTAKAIASWGVDYIVLTSVDRDDIPD 163
+++ C C +CA + R + PE AK +A GV+ ++LT + +PD
Sbjct: 1 IIVTRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPD 60
Query: 164 GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRI 223
++ I + T+ D +E L +GLD + ++++
Sbjct: 61 LVELLER---LLKLREGEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 224 VRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLGLGESDDDLKEAMADL 272
+ + +E+ LE L+ + + G+ + +I+ GE+D+DL+E + L
Sbjct: 118 IINRGHTFEEVLEALELLR--EAGIPVVVDNIVGLPGENDEDLEETLELL 165
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-18
Identities = 34/214 (15%), Positives = 79/214 (36%), Gaps = 14/214 (6%)
Query: 103 TATIMLLGDTCTRGCRFCAV-KTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSV----- 156
+ ++ C R C FC+ + +A G ++ +V
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSLRGKLRSRYLEALVREIELLAEKGEKEGLVGTVFIGGG 60
Query: 157 DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216
+ ++ + D+ + T +E L +G++ + +++
Sbjct: 61 TPTLLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLGVQS 120
Query: 217 V--KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLR 273
+ L+ I R E LE ++ + + + +++GL GE+++D +E + L+
Sbjct: 121 GDDEVLKAINR--GHTVEDVLEAVELLR-EAGPIKVSTDLIVGLPGETEEDFEETLKLLK 177
Query: 274 SIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKFD 305
+ D +++ +P TPL K P K +
Sbjct: 178 ELGPDRVSIFPLSPRPGTPLAKMYKRLKPPTKEE 211
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-09
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 9/184 (4%)
Query: 107 MLLGDTCTRGCRFCAVKTS---RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD 163
+ L C C FC+ S +PP+ E + GV+ ++LT + P
Sbjct: 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP- 59
Query: 164 GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQR 222
A ++ +KK+ P + T+ ++ L GLD ++++ + +
Sbjct: 60 ----ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVAD 115
Query: 223 IVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282
+R +++ LE LK + + GL T + LG + +DDL+E D ++L
Sbjct: 116 KIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSL 175
Query: 283 GQYL 286
+ L
Sbjct: 176 FRLL 179
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 21/173 (12%)
Query: 113 CTRGCRFCAVKT-SRNPAPPDPMEPENT----AKAIASWGV-DYIVLTSV-DRDDIPDGG 165
C C +C+ + + AK + G + + + +
Sbjct: 61 CPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDME-- 118
Query: 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDL--RAVETLVHSGLDVFAHNIETVKRLQRI 223
+KA+K++ + C + G L E L +G+D + HN+ET
Sbjct: 119 --EVVEAIKAVKEELG--LEVCASL---GMLTEEQAEKLADAGVDRYNHNLETSPEFYEN 171
Query: 224 VRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276
+ YE L L++ + + G+ S ++GLGE+ +D E + +L ++
Sbjct: 172 II-TTRTYEDRLNTLENVR--EAGIEVCSGGIVGLGETVEDRAELLLELANLP 221
|
Length = 335 |
| >gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 26/178 (14%)
Query: 113 CTRGCRFC--AVKTS----RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-G 165
C C +C + +S R E +AI + ++ S P G
Sbjct: 68 CPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRG---PSGKE 124
Query: 166 SGHFARTVKAMKKQKPDIMVEC----LTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL- 220
VKA+K++ D+ + LT + E L +G+D + HN+ET +
Sbjct: 125 VDQVVEAVKAIKEE-TDLEICACLGLLTEE------QAERLKEAGVDRYNHNLETSRSYF 177
Query: 221 QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVD 278
+V YE ++ + K G+ S ++G+GES +D E L+ +D D
Sbjct: 178 PNVV--TTHTYEDRIDTCEMVK--AAGIEPCSGGIIGMGESLEDRVEHAFFLKELDAD 231
|
Length = 336 |
| >gnl|CDD|232973 TIGR00433, bioB, biotin synthase | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 34/208 (16%)
Query: 113 CTRGCRFCAVKTSRN--PAPPDPMEPENT----AKAIASWGVD-YIVLTS---VDRDDIP 162
C C++CA +++ P+ AK + G + ++TS +
Sbjct: 40 CPEDCKYCA-QSAHYKTGIEKYPLLSVEEVLEAAKKAKAAGASRFCMVTSGRGPSDREFE 98
Query: 163 DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-Q 221
++ +K++ + V C + + +A + L +G+D + HN+ET
Sbjct: 99 -----KVLEAIREIKEE-TGLEV-CASLGLLSEEQA-QRLKDAGVDRYNHNLETSPSYYP 150
Query: 222 RIV--RDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDI 279
I Y+ LE LK A+ K GL S ++G+GE+ +D E L +DVD
Sbjct: 151 NICTTHT----YDDRLETLKRAR--KAGLSVCSGGIIGMGETMEDRIELAFALAELDVDS 204
Query: 280 LTLGQYLQP---TPLHLTVKEYVTPEKF 304
+ + +L P TPL + PE+
Sbjct: 205 VPI-NFLVPIPGTPLEDA--PPLDPEEC 229
|
Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 296 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 41/188 (21%)
Query: 113 CTRGCRFCAVKTSRNPAPPDP--MEPE---NTAKAIASWGVDYIVLTSVDRDDIPDGGSG 167
C C FCA R P P + PE + G+ +++ + P+
Sbjct: 69 CVNDCTFCAF--YRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEH---PELSLE 123
Query: 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ------ 221
++ + +K++ PD+ + L+ A E L + E +KRL+
Sbjct: 124 YYEELFRTIKEEFPDLHIHALS--------AGEILFLAREGG-LSYEEVLKRLKEAGLDS 174
Query: 222 --------------RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKE 267
+I P+ E+ LE+ + A + G+ T ++++LG E+ +D +
Sbjct: 175 MPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH--RLGIPTTATMLLGHVETREDRID 232
Query: 268 AMADLRSI 275
+ +R +
Sbjct: 233 HLEHIRDL 240
|
Length = 370 |
| >gnl|CDD|234446 TIGR04043, rSAM_MSMEG_0568, radical SAM protein, MSMEG_0568 family | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 45/213 (21%)
Query: 98 GDGIATATIMLLG----------DTCTR------GCRFCAVKTS----RNPAPPDPMEPE 137
DGI + I LL TC R C+FCA++ S R A P +
Sbjct: 90 ADGIPYSKIALLHGRDVLATTVLQTCIRYRDRARSCQFCAIEQSLAAGRTIARKTPEQLA 149
Query: 138 NTAKAIASW-GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGD 195
A+A GV +V+T+ + D G+ A +A+K I V+C D D
Sbjct: 150 EVAEAAVRLDGVKQMVMTT-GTPNTTDRGARILAECARAVKAAVDLPIQVQCEPPD---D 205
Query: 196 LRAVETLVHSGLDVFAHNIETVK---RLQRI--------VRDPRAGYEQSLEVLKHAKLS 244
L L +G D ++E V R +RI + A +E ++ V ++S
Sbjct: 206 LAWFTRLKAAGADSLGMHLEAVDPEVR-RRIMPGKATVPLERYFAAFEAAVRVFGRGQVS 264
Query: 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDV 277
+ ++ GLG+S D+L L + V
Sbjct: 265 -------TYLLAGLGDSPDELVAGAERLIDMGV 290
|
Members of this protein family are radical SAM proteins related to MSMEG_0568 from Mycobacterium smegmatis. Members occur within 8-gene operons in species as diverse as M. smegmatis, Rhizobium leguminosarum, Synechococcus elongatus, and Sorangium cellulosum. The function of the operon is unknown, but similarity of MSMEG_0568 to some cofactor biosynthesis radical SAM proteins suggests a similar biosynthetic function [Unknown function, Enzymes of unknown specificity]. Length = 354 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 100.0 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 100.0 | |
| PLN02428 | 349 | lipoic acid synthase | 100.0 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 100.0 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 100.0 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 100.0 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 100.0 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 99.97 | |
| PRK06256 | 336 | biotin synthase; Validated | 99.97 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 99.97 | |
| PRK07094 | 323 | biotin synthase; Provisional | 99.97 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 99.97 | |
| PRK08508 | 279 | biotin synthase; Provisional | 99.97 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.97 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 99.97 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.96 | |
| PLN02389 | 379 | biotin synthase | 99.96 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 99.96 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.96 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 99.96 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 99.96 | |
| PRK15108 | 345 | biotin synthase; Provisional | 99.96 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 99.95 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 99.95 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.95 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.95 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 99.94 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 99.94 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.94 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 99.94 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.93 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.92 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.92 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.91 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 99.91 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.91 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.91 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.91 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.91 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.91 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.9 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.9 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.9 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.89 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.89 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 99.88 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.88 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.88 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.87 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.87 | |
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 99.87 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.87 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.86 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.86 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.86 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.81 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.8 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.8 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.8 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.78 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.78 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.76 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.76 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.75 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.74 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.74 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.72 | |
| KOG2492 | 552 | consensus CDK5 activator-binding protein [Signal t | 99.72 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.72 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.71 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.71 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.71 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.67 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.67 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.66 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.65 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.63 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.62 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.61 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 99.6 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.6 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.55 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 99.55 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.51 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 99.49 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 99.49 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.49 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.48 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 99.47 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 99.47 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.47 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 99.45 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.45 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.45 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 99.45 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.43 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.42 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 99.42 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.41 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 99.41 | |
| KOG4355 | 547 | consensus Predicted Fe-S oxidoreductase [General f | 99.4 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.39 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 99.37 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 99.36 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.34 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 99.33 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 99.32 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 99.3 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 99.28 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.27 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 99.23 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.23 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 99.19 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 99.18 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 99.18 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.13 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 99.12 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.99 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 98.94 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 98.89 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 98.87 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 98.79 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 98.75 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 98.72 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 98.67 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 98.62 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 98.61 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 98.59 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.55 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 98.55 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 98.53 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 98.39 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 98.36 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 98.24 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 98.23 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 97.94 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 97.8 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function p | 97.79 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 97.7 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 97.68 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.62 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 97.54 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 97.53 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 97.48 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 97.44 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 97.43 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 97.43 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.41 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 97.35 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 97.24 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 97.17 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 97.02 | |
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 96.96 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 96.83 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 96.76 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.66 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 96.56 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 96.55 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 96.41 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 96.35 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.2 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 96.17 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 96.14 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 96.14 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 96.14 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 95.94 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 95.71 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 95.63 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 95.56 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 95.5 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 95.22 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 95.07 | |
| PRK14057 | 254 | epimerase; Provisional | 94.99 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 94.91 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 94.89 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 94.83 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 94.78 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 94.3 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.26 | |
| PRK15452 | 443 | putative protease; Provisional | 94.25 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 94.22 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 94.05 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.95 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 93.94 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 93.73 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 93.69 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.52 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 93.24 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 93.19 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 93.15 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.95 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 92.9 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 92.76 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 92.61 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 92.61 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 92.6 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 92.58 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 92.55 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 92.48 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 92.43 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 92.35 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 92.33 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 92.26 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 92.26 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 92.18 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 92.14 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.08 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 92.07 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 92.04 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 91.99 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 91.98 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 91.91 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 91.88 | |
| COG0685 | 291 | MetF 5,10-methylenetetrahydrofolate reductase [Ami | 91.8 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 91.79 | |
| PRK08005 | 210 | epimerase; Validated | 91.76 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 91.73 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 91.64 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 91.64 | |
| PRK15452 | 443 | putative protease; Provisional | 91.47 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 91.45 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 91.37 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 91.36 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 91.08 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 91.07 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 91.0 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 90.79 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.74 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.71 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 90.7 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 90.66 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 90.64 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 90.58 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 90.39 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 90.33 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 90.3 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 90.27 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 90.27 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.21 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 90.09 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 89.95 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 89.87 | |
| PLN02540 | 565 | methylenetetrahydrofolate reductase | 89.77 | |
| TIGR00677 | 281 | fadh2_euk methylenetetrahydrofolate reductase, euk | 89.68 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 89.51 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 89.34 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 89.28 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 89.24 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 89.17 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 89.08 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.06 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 89.06 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 89.04 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 88.98 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 88.95 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 88.86 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 88.72 | |
| PF01136 | 233 | Peptidase_U32: Peptidase family U32 This is family | 88.67 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 88.65 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 88.64 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 88.41 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 88.26 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 88.22 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 88.2 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 88.06 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 88.02 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 88.01 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 87.97 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 87.85 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 87.82 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 87.57 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 87.56 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 87.49 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 87.45 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 87.43 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 87.42 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 87.28 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 87.28 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 87.27 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 87.16 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 87.11 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 86.99 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 86.93 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 86.61 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 86.53 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 86.34 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 86.31 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 86.29 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 86.25 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 86.1 | |
| cd04824 | 320 | eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas | 86.08 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 86.01 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 85.77 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 85.43 | |
| PLN02591 | 250 | tryptophan synthase | 85.27 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 85.23 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 85.16 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 85.09 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 84.98 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 84.76 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 84.64 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 84.57 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 84.54 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 84.5 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 84.42 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 84.39 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 84.37 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 84.31 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 84.3 | |
| KOG2368 | 316 | consensus Hydroxymethylglutaryl-CoA lyase [Energy | 84.29 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 84.1 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 83.93 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 83.83 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 83.72 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 83.69 | |
| PF06180 | 262 | CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 | 83.52 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 83.44 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 83.35 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 83.19 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 83.07 | |
| PLN02591 | 250 | tryptophan synthase | 83.02 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 82.93 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 82.67 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 82.66 | |
| PF06180 | 262 | CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 | 82.58 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 82.51 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 82.38 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 82.19 | |
| PRK09432 | 296 | metF 5,10-methylenetetrahydrofolate reductase; Pro | 82.14 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 82.13 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 82.11 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 82.07 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 82.01 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 81.91 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 81.74 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 81.54 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 81.44 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 81.42 | |
| PF02219 | 287 | MTHFR: Methylenetetrahydrofolate reductase; InterP | 81.21 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 81.17 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 81.12 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 81.1 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 81.0 | |
| PRK13384 | 322 | delta-aminolevulinic acid dehydratase; Provisional | 80.96 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 80.94 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 80.87 | |
| KOG0564 | 590 | consensus 5,10-methylenetetrahydrofolate reductase | 80.57 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 80.52 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 80.36 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 80.32 | |
| PF01244 | 320 | Peptidase_M19: Membrane dipeptidase (Peptidase fam | 80.29 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 80.16 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 80.14 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 80.05 |
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=423.83 Aligned_cols=300 Identities=66% Similarity=1.174 Sum_probs=289.5
Q ss_pred CCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC
Q 018731 49 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 49 ~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~ 128 (351)
..++|.|++.+++.|+.+++++..|+...|+++|++|+||||.+||.|+.....++++|..++.|.++|+||++.+.|.+
T Consensus 57 ~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~P 136 (360)
T KOG2672|consen 57 RLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNP 136 (360)
T ss_pred cccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCchhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCC
Confidence 46799999999999999999999999999999999999999999999986777899999999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.++++.|+++.+++++.+|+.+|+||++++++|+|+|..+|++.++.||++.|++-|++++|||..+.+.++.++.+|+|
T Consensus 137 pPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLD 216 (360)
T KOG2672|consen 137 PPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLD 216 (360)
T ss_pred cCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
.+.||+||+.++...+||++.+|.|.+.+++.+++..|++.+++.+|+|+|||+|++.++++.+++.++|.+++++|++|
T Consensus 217 V~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~p 296 (360)
T KOG2672|consen 217 VYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQP 296 (360)
T ss_pred ceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCC
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhhhhhhc
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNTV 348 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~ 348 (351)
|+.++.+.++++|+.|+.|++++.++||.|+++||++||||.||++|++++|++|+.+..
T Consensus 297 tkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSsykage~~i~~~l~~r~~~~~ 356 (360)
T KOG2672|consen 297 TKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSSYKAGEYFIKNVLEKRKSKNS 356 (360)
T ss_pred ccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceeechhhhhHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999999999999999987644
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-61 Score=423.25 Aligned_cols=285 Identities=56% Similarity=0.961 Sum_probs=274.8
Q ss_pred CCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCC
Q 018731 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (351)
Q Consensus 47 ~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~ 126 (351)
.+..++|+||+.+++.|..+.+++++++...|+++|++|.||||.+||..+ +++||+.+..|+++|.||.+..++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 346789999999999999999999999999999999999999999999987 999999999999999999999987
Q ss_pred CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 127 ~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+..++++|+.++++.+..+|.+++++|++++|||+|+|..+|.+++++|++..|++.|++++|||...++.++.+.++|
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 7779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.|.++||+||+.+++..+| ++.+|++.++.++.+++..+.+.+++++|+|||||.+|+.++++.|++.|+|+++++|||
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 9999999999999998898 899999999999999997777999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHH
Q 018731 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKT 338 (351)
Q Consensus 287 ~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~ 338 (351)
+||..+.++..+++|++|+.|++.++.+||.++.+||++||||||++.|.+.
T Consensus 252 qPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~~~~ 303 (306)
T COG0320 252 QPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEA 303 (306)
T ss_pred CCccccCCceeccCHHHHHHHHHHHHHccchhhccCcccccccchHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987654
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=441.64 Aligned_cols=303 Identities=73% Similarity=1.253 Sum_probs=283.7
Q ss_pred CCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCC
Q 018731 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (351)
Q Consensus 47 ~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~ 126 (351)
.+..++|+||+.+++.|+.+.++.++++...|+++|++|+|||+.+||.++.+...+.++|+++++|+++|.||+++..+
T Consensus 46 ~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~ 125 (349)
T PLN02428 46 DKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSR 125 (349)
T ss_pred CCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCC
Confidence 45568999999999999999999999999999999999999999999998755667999999999999999999999876
Q ss_pred CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 127 ~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
++.+.+++++.++++.+.++|+++++|+||+.++++|++.+++.++++.|++..|++.++++++++..+++.++.|+++|
T Consensus 126 ~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG 205 (349)
T PLN02428 126 TPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSG 205 (349)
T ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcC
Confidence 66667788999999999999999999999998888999999999999999998899999999999887999999999999
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
++.+++|+|+.+++++.++++++++++++++++.+++.++|+.+++++|+|+|||+||+.+++++++++++|.+++++|+
T Consensus 206 ~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL 285 (349)
T PLN02428 206 LDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYL 285 (349)
T ss_pred CCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeecccc
Confidence 99999999998888887874578999999999999996669999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhhhhhhcC
Q 018731 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAKNTVA 349 (351)
Q Consensus 287 ~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~ 349 (351)
+||..+.++..+++|++|+.|++++.++||.++++||++||||||++.++++++.+++++.+|
T Consensus 286 ~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrssy~a~~~~~~~~~~~~~~~~~~ 348 (349)
T PLN02428 286 RPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYKAGEFFIKSMIREDRAKAAA 348 (349)
T ss_pred CCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccchhhhHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999977765
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=434.72 Aligned_cols=314 Identities=53% Similarity=0.966 Sum_probs=284.0
Q ss_pred cCCCcceeccccCCCCCCCCCchhHhhhccCCc----chHHHHHHhcCCCHHHHHHHccCCCccccccCC-CCceeeEEE
Q 018731 32 MKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQ----RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGG-GDGIATATI 106 (351)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~----~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~-~~~~~~~~~ 106 (351)
.+.+..+.++++.+. ..++|+||+.+++.|+ .+.++..+++...|+++|++|+|||+.+||.++ +.+..+++|
T Consensus 75 ~~~~~~~~~~~~~~~--~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVCeea~CPNi~EC~~~~~~~~~~tATf 152 (398)
T PTZ00413 75 GLKPSAASIGPIKRG--EEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATATI 152 (398)
T ss_pred ccccccccCCCccCC--CCCCCcceeecCCCCccccchHHHHHHHHHhCCCceeeCCCCCCChHHHhCCCCCCCCceeEe
Confidence 344445555555533 3589999999999998 789999999999999999999999999999875 223458999
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEE
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE 186 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~ 186 (351)
|+.++.|+.+|.||++..+..+..++++|+.+.++.+.++|++++++|+|+.++++|++.++|.++++.|++..|++.|+
T Consensus 153 milG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ie 232 (398)
T PTZ00413 153 MVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLE 232 (398)
T ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEE
Confidence 99999999999999998765445578999999999999999999999999988899999999999999999988899999
Q ss_pred EeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHh-CCCCeEEEeeeeeCCCCHHHH
Q 018731 187 CLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLS-KKGLITKSSIMLGLGESDDDL 265 (351)
Q Consensus 187 ~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~-~~Gi~v~~~~IvGlgEt~e~~ 265 (351)
++.+++..+++.++.|++||+++++||+||..+++..+|++.++|++.+++|+.+++. .+|+.+++++|+|+|||++|+
T Consensus 233 vligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEv 312 (398)
T PTZ00413 233 ALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEV 312 (398)
T ss_pred EcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHH
Confidence 9999988899999999999999999999999999988874468999999999999984 259999999999999999999
Q ss_pred HHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhhhh
Q 018731 266 KEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRERAK 345 (351)
Q Consensus 266 ~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~~~ 345 (351)
.++++.|+++|+|.++|+|||+||+.+.++..|++|++|+.|++++.++||.++++||++||||||++.++++.+.+|++
T Consensus 313 ie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSSY~A~e~~~~~~~~~r~~ 392 (398)
T PTZ00413 313 RQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAGEYYIKNLVKQRRK 392 (398)
T ss_pred HHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccccchhccHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888887775
Q ss_pred hh
Q 018731 346 NT 347 (351)
Q Consensus 346 ~~ 347 (351)
+.
T Consensus 393 ~~ 394 (398)
T PTZ00413 393 AK 394 (398)
T ss_pred hc
Confidence 54
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=428.92 Aligned_cols=295 Identities=47% Similarity=0.872 Sum_probs=275.1
Q ss_pred cCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCccc
Q 018731 43 HTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAV 122 (351)
Q Consensus 43 ~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~ 122 (351)
.....+..++|+||+.+++.|+.+.++..+++...|+++|++|+|||+.+||.++ +++|+.+++||+.+|+||++
T Consensus 8 ~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v 82 (302)
T TIGR00510 8 IPNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDV 82 (302)
T ss_pred CcccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCc
Confidence 3344556789999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHH
Q 018731 123 KTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (351)
Q Consensus 123 ~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L 202 (351)
+..+++...+++++.++++.+.+.|+++|+|||++.+++++.+.+++.++++.|++..|++.|+++++++..+.+.++.|
T Consensus 83 ~~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l 162 (302)
T TIGR00510 83 AHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDIL 162 (302)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHH
Confidence 98776666788999999999999999999999999888887778899999999999889999999988876678999999
Q ss_pred HHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+++|++.+.+++||.+++++.++ ++++++++++.++.+++..+|+.+++++|+|||||+||+.+++++|+++|++.+++
T Consensus 163 ~~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 163 LDAPPDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HHcCchhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999988887777 68999999999999999777999999999999999999999999999999999999
Q ss_pred ecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHHHHHHHhhh
Q 018731 283 GQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELFVKTMVRER 343 (351)
Q Consensus 283 ~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~~~~~~~~~ 343 (351)
++|++||+.+.++..+++|++|+.+++++.++||.++++||++||||||++.++++++.++
T Consensus 242 gqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~a~~~~~~~~~~~~ 302 (302)
T TIGR00510 242 GQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGRLVKT 302 (302)
T ss_pred ecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999988753
|
The family shows strong sequence conservation. |
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-54 Score=398.44 Aligned_cols=281 Identities=48% Similarity=0.847 Sum_probs=261.2
Q ss_pred CCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCC
Q 018731 46 RDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTS 125 (351)
Q Consensus 46 ~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~ 125 (351)
+.+..++|+||+.+++.|+.+.++.++++..+|++||+.|+||++.+||.++ +++|+.+|+||+++|+||+++.+
T Consensus 8 ~~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~~~g 82 (290)
T PRK12928 8 RIPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQVDKG 82 (290)
T ss_pred cCCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCccCC
Confidence 4466789999999999999999999999999999999999999999999887 99999999999999999999985
Q ss_pred CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCC-CHHHHHHHHH
Q 018731 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-DLRAVETLVH 204 (351)
Q Consensus 126 ~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~-~~e~l~~L~~ 204 (351)
+ +..+++++++++++++.+.|+++|+|||++.+++++.+.+++.++++.|++..|+++|+++++++.. ..+.+..|++
T Consensus 83 ~-~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~ 161 (290)
T PRK12928 83 R-PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLA 161 (290)
T ss_pred C-CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHH
Confidence 5 4457889999999999999999999999988788877788999999999998889999998887654 6789999999
Q ss_pred cCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 205 aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
+|.+.+.+++||.+++++.++ ++++++++++.++.+++..+++.+++++|+|+|||+||+.+++++++++++|.+++++
T Consensus 162 Ag~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 162 AKPDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred cCchhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 999999999999988887777 6899999999999999944459999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccch
Q 018731 285 YLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGE 333 (351)
Q Consensus 285 ~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~ 333 (351)
|++||+.+.++..+++|++|+.+++++.++||.++++||++||||||++
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~rssy~a~~ 289 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGE 289 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999986
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=347.32 Aligned_cols=280 Identities=56% Similarity=0.951 Sum_probs=252.0
Q ss_pred CCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC
Q 018731 49 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 49 ~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~ 128 (351)
..++|+||+.+++.|+.+.+...+++..+|++||+.|+||+...+|.++ +++|+.+|+||+++|+||+++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r~- 77 (289)
T PRK05481 4 VARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGRP- 77 (289)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCCC-
Confidence 4569999999999999999999999999999999999999988899876 8999999999999999999998763
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..+++++++++++.+.+.|+++|+|+||+.+++++.+.+++.++++.|++..|++.|..+++......+.+..++++|.+
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 34678999999999999999999999998655654456799999999999888889988887665556889999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
.+.++.|+.+++++.++ ++++++++++.++.+++..+|+.+++++|+|+|||+||+.+++++++++++|.+++++|+.|
T Consensus 158 i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~p 236 (289)
T PRK05481 158 VFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQP 236 (289)
T ss_pred eeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCC
Confidence 99999999887877776 68999999999999999666999999999999999999999999999999999999999876
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcCcceeccCcccccccccchHH
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVRSSYRAGELF 335 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~~r~~~~a~~~~ 335 (351)
...++++...+.++++.++.++..++||.++.+||++||||+|++.+
T Consensus 237 a~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 283 (289)
T PRK05481 237 SRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQA 283 (289)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhHHHH
Confidence 55234678899999999999999999999999999999999999854
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=245.18 Aligned_cols=248 Identities=19% Similarity=0.208 Sum_probs=197.1
Q ss_pred hhccCCcch--HHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeE--EEEeeccCCCCCCcCcccCCCCC---CCC
Q 018731 58 QKAPQGQRF--QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA--TIMLLGDTCTRGCRFCAVKTSRN---PAP 130 (351)
Q Consensus 58 ~~~~~g~~~--~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~--~~i~~s~gC~~~C~FC~~~~~~~---~~~ 130 (351)
+++.+|+++ .++..+++..++..|+..|+ .+++.++|+ .+.+. .+++.|++|+.+|.||+++...+ ...
T Consensus 3 ~~~~~~~~ls~~e~~~L~~~~~~~~L~~~A~--~vr~~~~g~--~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~ 78 (351)
T TIGR03700 3 EKVEAGQRLSFEDGLFLYASDDLLTLGELAA--LVRERKHGD--KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYA 78 (351)
T ss_pred hHHhCCCCCCHHHHHHHcCCCcHHHHHHHHH--HHHHHhcCC--eEEEeccCCcccccccccCCccCceeCCCCCcccCC
Confidence 455666555 56888888788999999999 999988874 55444 66788999999999999987543 223
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVET 201 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~ 201 (351)
++++++.+.++.+.+.|+++++++||+.++++ .+++.++++.|++.+|++.+.++++ .+..+++.++.
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 67899999999999999999999999875543 6899999999999999998887553 24457889999
Q ss_pred HHHcCCCeeec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCE
Q 018731 202 LVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 202 L~~aG~~~i~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~ 279 (351)
|+++|++++.+ ++|++++ +++.+++.+.+.++++++++.+++ .|+.+++++|+|+|||.+|+.+++..+++++++.
T Consensus 156 LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~--~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~ 233 (351)
T TIGR03700 156 LKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE--LGLKTNATMLYGHIETPAHRVDHMLRLRELQDET 233 (351)
T ss_pred HHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH--cCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHhh
Confidence 99999999985 8999754 666665223578899999999999 9999999999999999999999999999999876
Q ss_pred Eeee-----cccCC-CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 280 LTLG-----QYLQP-TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 280 i~i~-----~~l~P-Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
.++. +|+.+ ||+........++.+..+..++++.+
T Consensus 234 ~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~ 274 (351)
T TIGR03700 234 GGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLY 274 (351)
T ss_pred CCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHh
Confidence 3332 34423 78752112457888888877777653
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=241.89 Aligned_cols=274 Identities=23% Similarity=0.268 Sum_probs=208.4
Q ss_pred HhhhccCCcch--HHHHHHhc--CCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCCC--
Q 018731 56 LRQKAPQGQRF--QEVKESLS--SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRNP-- 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~--~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~~-- 128 (351)
+.+++.+|+.+ +++..+++ ..+++.|+..|+ .+++.++| +.+...+++++ |++|+++|.||+++...+.
T Consensus 10 ~~~~~~~g~~~~~~e~~~ll~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~ 85 (336)
T PRK06256 10 LARKLLEGEGLTKEEALALLEIPDDDLLELLAAAY--EVRKHFCG--KKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPV 85 (336)
T ss_pred HHHHHHcCCCCCHHHHHHHHcCChHHHHHHHHHHH--HHHHHhCC--CeEEEEEeeeccCCCCCCCCccCCCcCCCCCCC
Confidence 34566777666 56888887 346899999999 99999887 45666677765 9999999999999864321
Q ss_pred ---CCCCchhHHHHHHHHHhCCCcEEEE-eccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHH
Q 018731 129 ---APPDPMEPENTAKAIASWGVDYIVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (351)
Q Consensus 129 ---~~~~~eei~~~~~~~~~~G~~~I~l-tgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~ 204 (351)
..++++++.+.++.+.+.|+.++.+ +||..+ .....+++.++++.|++. +++.+.+ +.+.++++.++.|++
T Consensus 86 ~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p--~~~~~~~~~e~i~~i~~~-~~i~~~~--~~g~l~~e~l~~Lke 160 (336)
T PRK06256 86 YRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGP--SGKEVDQVVEAVKAIKEE-TDLEICA--CLGLLTEEQAERLKE 160 (336)
T ss_pred ceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCC--CchHHHHHHHHHHHHHhc-CCCcEEe--cCCcCCHHHHHHHHH
Confidence 2357799999999999999987766 445432 222356899999999986 5666544 334469999999999
Q ss_pred cCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 205 aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
+|++++.+++||.++.++.++ +.+++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.++++++++.++++
T Consensus 161 aG~~~v~~~lEts~~~~~~i~-~~~t~~~~i~~i~~a~~--~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~- 236 (336)
T PRK06256 161 AGVDRYNHNLETSRSYFPNVV-TTHTYEDRIDTCEMVKA--AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPIN- 236 (336)
T ss_pred hCCCEEecCCccCHHHHhhcC-CCCCHHHHHHHHHHHHH--cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec-
Confidence 999999999999444677776 67899999999999999 99999999999999999999999999999999999995
Q ss_pred ccCC---CCCcccccCCCCHHHHHHHHHHHHhc---------CcceeccCccccccc-ccchHHHHHHHhhhh
Q 018731 285 YLQP---TPLHLTVKEYVTPEKFDFWKAYGESI---------GFRYVASGPLVRSSY-RAGELFVKTMVRERA 344 (351)
Q Consensus 285 ~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~~---------G~~~~~~~~~~r~~~-~a~~~~~~~~~~~~~ 344 (351)
++.| ||++ ....+++.++.++.+.++.+ |.+....+..+...+ .|+..++|+||+..-
T Consensus 237 ~l~P~pGT~l~--~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g 307 (336)
T PRK06256 237 FLNPIPGTPLE--NHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGNYLTTVG 307 (336)
T ss_pred ccccCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHhccCceeeECCcccCCC
Confidence 5656 7775 24567888888877666643 223222333333333 233388899996544
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=240.57 Aligned_cols=245 Identities=17% Similarity=0.250 Sum_probs=198.6
Q ss_pred hhhccCCcch--HHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeE--EEEeeccCCCCCCcCcccCCCCCC---C
Q 018731 57 RQKAPQGQRF--QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA--TIMLLGDTCTRGCRFCAVKTSRNP---A 129 (351)
Q Consensus 57 ~~~~~~g~~~--~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~--~~i~~s~gC~~~C~FC~~~~~~~~---~ 129 (351)
.+++.+|+++ .|+..|++. ++..|+..|+ .+++.++|+ .+... .++++|+.|..+|.||+|...++. .
T Consensus 4 ~~kv~~g~~ls~eeal~Ll~~-dl~~L~~~A~--~vR~~~~G~--~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y 78 (353)
T PRK08444 4 IEKLENNERLNQEEAVKLYDL-DLFTLGKYAD--KKRTKLHGK--KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPY 78 (353)
T ss_pred HHHHhcCCCCCHHHHHHHhhc-CHHHHHHHHH--HHHHHhcCC--EEEEEecCCcccccccccCCccCCCccCCCCCccc
Confidence 3566777665 568888854 8999999999 999999874 44333 567889999999999999874422 3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRAVE 200 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~e~l~ 200 (351)
.++++|+.+.++++.+.|++++.|+||..+++ +.+++.++++.||+.+|++++.++++. +...+|.+.
T Consensus 79 ~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~---~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 79 TMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY---GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC---CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence 46779999999999999999999998876554 378999999999999999999876543 344679999
Q ss_pred HHHHcCCCeeec-chhchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCC
Q 018731 201 TLVHSGLDVFAH-NIETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDV 277 (351)
Q Consensus 201 ~L~~aG~~~i~~-~ies~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~ 277 (351)
.|++||++++.+ +.|.+++ +++.+. |. .+.++|++.++.+++ .|+.+++++|+|+|||.+|+.+++..|++++.
T Consensus 156 ~LkeAGl~~~~g~~aEi~~~~vr~~I~-p~k~~~~~~~~i~~~a~~--~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~ 232 (353)
T PRK08444 156 DMLEYGVDSMPGGGAEIFDEEVRKKIC-KGKVSSERWLEIHKYWHK--KGKMSNATMLFGHIENREHRIDHMLRLRDLQD 232 (353)
T ss_pred HHHHhCcccCCCCCchhcCHHHHhhhC-CCCCCHHHHHHHHHHHHH--cCCCccceeEEecCCCHHHHHHHHHHHHHhcc
Confidence 999999999998 6899765 677776 54 466899999999999 99999999999999999999999999999999
Q ss_pred CEEeeeccc----CC--CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 278 DILTLGQYL----QP--TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 278 d~i~i~~~l----~P--Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
+.++|..|+ +| ||+. .....++.++.+..++++.+
T Consensus 233 ~t~gf~~fIp~~f~~~~t~l~--~~~~~~~~e~Lr~iAi~Rl~ 273 (353)
T PRK08444 233 KTGGFNAFIPLVYQRENNYLK--VEKFPSSQEILKTIAISRIL 273 (353)
T ss_pred ccCCceEEEecccCCCCCcCC--CCCCCCHHHHHHHHHHHHHh
Confidence 988875343 22 6664 24568888888877777653
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=233.90 Aligned_cols=232 Identities=23% Similarity=0.339 Sum_probs=188.8
Q ss_pred HHHHHHhcCCC---HHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHH
Q 018731 67 QEVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTA 140 (351)
Q Consensus 67 ~~~~~ll~~~~---l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~ 140 (351)
.|++.||+..+ ++.|++.|+ .+++.+.| +.+...+++.+|++|+++|.||+++...+. ..++++++.+++
T Consensus 4 ~e~~~ll~~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~ 79 (323)
T PRK07094 4 DEILELLSNDDEEELKYLFKAAD--EVRKKYVG--DEVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECA 79 (323)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH--HHHHHhCC--CEEEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHH
Confidence 46777877644 345899999 99999887 467778888999999999999999875432 235788999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-
Q 018731 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR- 219 (351)
Q Consensus 141 ~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~- 219 (351)
+.+.+.|++.|+|+||+++.+. .+++.++++.|++. +++.+.+ +. +..+++.++.|+++|++++.+++||.++
T Consensus 80 ~~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~-~~l~i~~-~~-g~~~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 80 KKAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKE-LDVAITL-SL-GERSYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHcc-CCceEEE-ec-CCCCHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9988899999999999754343 58999999999986 5666654 23 3358999999999999999999999865
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK 296 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~ 296 (351)
.++.++ +++++++++++++.+++ .|+.+++++|+|+ |||.+++.++++++++++++.+.++.|. .| ||++. .
T Consensus 154 ~~~~i~-~~~s~~~~~~~i~~l~~--~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~--~ 228 (323)
T PRK07094 154 LYAKLH-PGMSFENRIACLKDLKE--LGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKD--E 228 (323)
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHH--cCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCccc--C
Confidence 677776 57899999999999999 9999999999999 9999999999999999999999996554 33 88863 3
Q ss_pred CCCCHHHHHHHHHHHHh
Q 018731 297 EYVTPEKFDFWKAYGES 313 (351)
Q Consensus 297 ~~v~~~e~~~~~~~~~~ 313 (351)
...+.++..++.+.++.
T Consensus 229 ~~~~~~~~~~~~a~~R~ 245 (323)
T PRK07094 229 KGGSLELTLKVLALLRL 245 (323)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34667777776666654
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=235.21 Aligned_cols=231 Identities=22% Similarity=0.306 Sum_probs=190.0
Q ss_pred HHHHHHhcCCCHH-HHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCC-----CCCCCchhHHHH
Q 018731 67 QEVKESLSSLKLN-TVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENT 139 (351)
Q Consensus 67 ~~~~~ll~~~~l~-~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~-----~~~~~~eei~~~ 139 (351)
.++..+++....+ .|+++|. .+|++|.| +.|...+++++ |.+|+.+|.||+++...+ ...++.++|++.
T Consensus 17 ~e~~~l~~~~~~~~~L~~aA~--~~R~~~~g--~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~ 92 (335)
T COG0502 17 DEALALLDLPDEDELLFEAAQ--KHRLHFDG--NEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEA 92 (335)
T ss_pred HHHHHHHcCCcchHHHHHHHH--HHHHhcCC--CeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHH
Confidence 4577777766555 7899999 99999998 57889999988 445599999999987431 123567889999
Q ss_pred HHHHHhCC-CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchH
Q 018731 140 AKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (351)
Q Consensus 140 ~~~~~~~G-~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~ 218 (351)
++.+.+.| .+.+.+++|.. .+...+++.++++.+++.. ++.+.+ +.+.++++.++.|+++|+++++||+||..
T Consensus 93 Ak~ak~~Ga~r~c~~aagr~---~~~~~~~i~~~v~~Vk~~~-~le~c~--slG~l~~eq~~~L~~aGvd~ynhNLeTs~ 166 (335)
T COG0502 93 AKKAKAAGATRFCMGAAGRG---PGRDMEEVVEAIKAVKEEL-GLEVCA--SLGMLTEEQAEKLADAGVDRYNHNLETSP 166 (335)
T ss_pred HHHHHHcCCceEEEEEeccC---CCccHHHHHHHHHHHHHhc-CcHHhh--ccCCCCHHHHHHHHHcChhheecccccCH
Confidence 99999999 55566677763 2234789999999999653 444433 33467999999999999999999999977
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeecccCC---CCCccc
Q 018731 219 RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQP---TPLHLT 294 (351)
Q Consensus 219 ~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~P---Tp~~~~ 294 (351)
++|+.+. ++++|++++++++.+++ +|+.++++.|+|+|||.+|..+++..++++. +|.|+++ +|.| ||++
T Consensus 167 ~~y~~I~-tt~t~edR~~tl~~vk~--~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn-~l~P~~GTPle-- 240 (335)
T COG0502 167 EFYENII-TTRTYEDRLNTLENVRE--AGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPIN-FLNPIPGTPLE-- 240 (335)
T ss_pred HHHcccC-CCCCHHHHHHHHHHHHH--cCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeee-eecCCCCCccc--
Confidence 7887776 78999999999999999 9999999999999999999999999999999 9999995 7656 9987
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 018731 295 VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 295 ~~~~v~~~e~~~~~~~~~~ 313 (351)
..+.+++.++.++.+.++.
T Consensus 241 ~~~~~~~~e~lk~IA~~Ri 259 (335)
T COG0502 241 NAKPLDPFEFLKTIAVARI 259 (335)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 3677899888888777664
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=230.49 Aligned_cols=235 Identities=20% Similarity=0.273 Sum_probs=185.7
Q ss_pred CceeeEEEEee-ccCCCCCCcCcccCCCC-C---CCC-CCchhHHHHHHHHHhCCCcEEEEe-ccCCCCCCCCcHHHHHH
Q 018731 99 DGIATATIMLL-GDTCTRGCRFCAVKTSR-N---PAP-PDPMEPENTAKAIASWGVDYIVLT-SVDRDDIPDGGSGHFAR 171 (351)
Q Consensus 99 ~~~~~~~~i~~-s~gC~~~C~FC~~~~~~-~---~~~-~~~eei~~~~~~~~~~G~~~I~lt-gg~~~~l~~~~~~~~~~ 171 (351)
|.+...+++++ |.+|+.+|.||+++... . ... ++++++.+.++++.+.|+.++.++ +|.. +++...+++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~--~~~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG--LDDKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC--CCcccHHHHHH
Confidence 45668888886 99999999999998632 1 122 577999999999888999999874 5553 33445789999
Q ss_pred HHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 172 TVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 172 li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+++.|++..|++.+.+ ..+..+++.++.|+++|++++++++||.+++++.++ ++++|++++++++.+++ .|+.++
T Consensus 80 i~~~ik~~~p~l~i~~--s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~--~Gi~v~ 154 (279)
T PRK08508 80 AAKAVKKEVPGLHLIA--CNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKE--AGLGLC 154 (279)
T ss_pred HHHHHHhhCCCcEEEe--cCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHH--cCCeec
Confidence 9999999888877654 335569999999999999999999999877776555 57899999999999999 999999
Q ss_pred EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHHHhc---------Cccee
Q 018731 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGESI---------GFRYV 319 (351)
Q Consensus 252 ~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~~---------G~~~~ 319 (351)
+++|+|+|||.||+.+++.++++++++.+++ +|+.| ||+. ....++++..++.++++.+ |.+..
T Consensus 155 sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl-~~~~p~~~t~~~---~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~ 230 (279)
T PRK08508 155 SGGIFGLGESWEDRISFLKSLASLSPHSTPI-NFFIPNPALPLK---APTLSADEALEIVRLAKEALPNARLMVAGGREV 230 (279)
T ss_pred ceeEEecCCCHHHHHHHHHHHHcCCCCEEee-CCcCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCceeeecCChhh
Confidence 9999999999999999999999999999999 57766 7764 2457888888887777653 22222
Q ss_pred ccCcccccccccc--hHHHHHHHhhhh
Q 018731 320 ASGPLVRSSYRAG--ELFVKTMVRERA 344 (351)
Q Consensus 320 ~~~~~~r~~~~a~--~~~~~~~~~~~~ 344 (351)
..+......+.|| ..++++||+..-
T Consensus 231 ~~~~~~~~~~~~g~n~~~~g~~lt~~g 257 (279)
T PRK08508 231 VFGERQYEIFEAGANAIVIGDYLTTKG 257 (279)
T ss_pred hchhhHHHHHhcCCcceeecCcccCCC
Confidence 2233444455664 389999997654
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=241.02 Aligned_cols=272 Identities=19% Similarity=0.218 Sum_probs=209.2
Q ss_pred hhccCCcch--HHHHHHhcC---CCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCC--CCC
Q 018731 58 QKAPQGQRF--QEVKESLSS---LKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRN--PAP 130 (351)
Q Consensus 58 ~~~~~g~~~--~~~~~ll~~---~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~--~~~ 130 (351)
+++.+|+.+ .|+..|++. .+++.|+..|+ .+++.++| +.+.....+++|++|+.+|.||+++...+ ...
T Consensus 28 ~~il~g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G--~~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ 103 (371)
T PRK09240 28 ERALNKDRLSLEDLMALLSPAAEPYLEEMAQKAQ--RLTRQRFG--NTISLYTPLYLSNYCANDCTYCGFSMSNKIKRKT 103 (371)
T ss_pred HHHHhcCCCCHHHHHHHhCCCChhHHHHHHHHHH--HHHHHHcC--CEEEEEeceEEcccccCcCCcCCCCCCCCCcccc
Confidence 345566555 468888874 35888999999 99999888 46766778888999999999999976432 234
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++++|+.+.++.+.+.|+++|.|+||+++. ..+.+++.++++.|++.+|++++++ +.++.+.++.|+++|++++
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~--~~~~e~l~~~i~~Ik~~~p~i~i~~----g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEA--KVGVDYIRRALPIAREYFSSVSIEV----QPLSEEEYAELVELGLDGV 177 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCC--CCCHHHHHHHHHHHHHhCCCceecc----CCCCHHHHHHHHHcCCCEE
Confidence 678999999999999999999999888643 2347999999999999888877754 2258899999999999999
Q ss_pred ecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhCCCC------EE
Q 018731 211 AHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDVD------IL 280 (351)
Q Consensus 211 ~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~lg~d------~i 280 (351)
++++||.++ .++.++ ++++++++++++++.+++ +|+. +++++|+|+||+.+|+.+++..+++++++ .|
T Consensus 178 ~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~--aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv 255 (371)
T PRK09240 178 TVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGR--AGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSI 255 (371)
T ss_pred EEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHH--cCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceee
Confidence 999999855 666654 347899999999999999 9996 99999999999999999999999998864 67
Q ss_pred eeecccCCCCCcccccCCCCHHHHHHHHHHHHhc----Cc-----ceeccCc----ccccccccch-HHHHHHHhh
Q 018731 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI----GF-----RYVASGP----LVRSSYRAGE-LFVKTMVRE 342 (351)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~----G~-----~~~~~~~----~~r~~~~a~~-~~~~~~~~~ 342 (351)
++ ++++|.+..+.....+++.++.++....+.+ +. +....+. +....+.||+ .++|+|++.
T Consensus 256 ~~-~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag~~~~~G~y~~~ 330 (371)
T PRK09240 256 SF-PRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAGSSTQPGGYADD 330 (371)
T ss_pred ec-CccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccCccCCCCCcCCC
Confidence 77 6778854333345678998988876655432 22 1111111 2223445555 778899876
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=235.94 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=196.8
Q ss_pred HhhhccCCcch--HHHHHHhc---CCCHHHHHHHccCCCccccccCCCCceeeEEEEe--eccCCCCCCcCcccCCCCCC
Q 018731 56 LRQKAPQGQRF--QEVKESLS---SLKLNTVCEEAQCPNIGECWNGGGDGIATATIML--LGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~---~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~--~s~gC~~~C~FC~~~~~~~~ 128 (351)
+.+++.+|+++ .|...+++ ..++..|+..|+ .+++.++| |.+.....++ .|+.|+.+|.||++....+.
T Consensus 18 ~~~kv~~g~~ls~eeal~Ll~~~~~~~l~~L~~~A~--~iR~~~~G--~~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~ 93 (370)
T PRK05926 18 LFDDYLSGARLSEEDALQLLLLTDAEDQRALWSFAD--LIRANRVG--DTVYYSSTLYLYPTNFCQFNCTFCSFYAKPGD 93 (370)
T ss_pred HHHHHHcCCCCCHHHHHHHHhCCCchHHHHHHHHHH--HHHHHhcC--CeEEEEEeeeeecCCCCCCCCCccccccCCCC
Confidence 44677788776 46888883 357899999999 99999987 4666666654 59999999999998764432
Q ss_pred ---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCH
Q 018731 129 ---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDL 196 (351)
Q Consensus 129 ---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~ 196 (351)
..++++|+.+.+++. ..|+++|.|+||..+.+ +.+++.++++.|++.+|++.+.++++. ...++
T Consensus 94 ~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~---~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~ 169 (370)
T PRK05926 94 PKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC---NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVK 169 (370)
T ss_pred cccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC---CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHH
Confidence 235678999999887 68999999999887554 378999999999999999988876532 23468
Q ss_pred HHHHHHHHcCCCeeecc-hhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHSGLDVFAHN-IETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~-ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
+.++.|++||++++.++ .|++++ .++.+...+.+.++|+++++.+++ .|+.+++++|+|+|||.+|+.+++..|++
T Consensus 170 e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~--~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~ 247 (370)
T PRK05926 170 EVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS--LGIPSNATMLCYHRETPEDIVTHMSKLRA 247 (370)
T ss_pred HHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCcccCceEEeCCCCHHHHHHHHHHHHh
Confidence 89999999999999984 999766 565565235688999999999999 99999999999999999999999999999
Q ss_pred CCCCEEeeeccc----CC--CCCccc--ccCCCCHHHHHHHHHHHHh
Q 018731 275 IDVDILTLGQYL----QP--TPLHLT--VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 275 lg~d~i~i~~~l----~P--Tp~~~~--~~~~v~~~e~~~~~~~~~~ 313 (351)
++++.++|..|+ +| ||+... .....+..+..++.++++.
T Consensus 248 Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl 294 (370)
T PRK05926 248 LQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARL 294 (370)
T ss_pred cCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHH
Confidence 999998887665 24 665421 1224566677777667665
|
|
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=241.76 Aligned_cols=264 Identities=18% Similarity=0.293 Sum_probs=196.0
Q ss_pred ccCCCcceeccccCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeec
Q 018731 31 KMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLG 110 (351)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s 110 (351)
+....+.+.|+.++|+++.+++|+.|.+.....+....+.+....... . .+...+.++ ..+++.++
T Consensus 86 ~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~-----~~A~v~I~ 151 (437)
T COG0621 86 EEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKF------D---KLPPRREGG-----VRAFVKIQ 151 (437)
T ss_pred HHHHhhCCCceEEECCccHHHHHHHHHHHhhccccccccccccccccc------c---cCCCCcCCC-----eEEEEEhh
Confidence 444557899999999999999999997654433332111111111111 1 222224454 89999999
Q ss_pred cCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-Cc--HHHHHHHHHHHHHhCCC---c
Q 018731 111 DTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-GG--SGHFARTVKAMKKQKPD---I 183 (351)
Q Consensus 111 ~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~~--~~~~~~li~~ik~~~p~---i 183 (351)
.||+++|+||.+|+.||... +.+++|+++++.+++.|+++|+|+|++...+.. .+ ...|.+|++.|.+ .+| +
T Consensus 152 eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~G~~ri 230 (437)
T COG0621 152 EGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IPGIERI 230 (437)
T ss_pred cCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CCCceEE
Confidence 99999999999999987655 456899999999999999999999988654421 11 3569999999988 455 3
Q ss_pred EEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C
Q 018731 184 MVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G 259 (351)
Q Consensus 184 ~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g 259 (351)
++....|.- .+++.++.+++.. +..+.+-+||.++ +.+.++ ++++.++.++.++++++.+|++.++++||||| |
T Consensus 231 R~~~~~P~~-~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPg 308 (437)
T COG0621 231 RFGSSHPLE-FTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPG 308 (437)
T ss_pred EEecCCchh-cCHHHHHHHhcCCcccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCCceEeccEEEECCC
Confidence 444444533 4889999998852 4455678899765 566665 68999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc---cccCCCCHHHHHHHHHHH
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL---TVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~---~~~~~v~~~e~~~~~~~~ 311 (351)
||+|||++|++++++.+++.++++.|+ +| ||.+. ++...+..+.+.++.++.
T Consensus 309 ETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~ 365 (437)
T COG0621 309 ETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQ 365 (437)
T ss_pred CCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 66 88872 122334445555555443
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=235.30 Aligned_cols=265 Identities=17% Similarity=0.239 Sum_probs=200.7
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCC--CC---CCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR--NP---APPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~--~~---~~~~~eei~~~ 139 (351)
..|++.++.. ++..|+..|+ .+++.++++ +.+...+++++ |++|+.+|.||++.... +. ..++++++.+.
T Consensus 49 ~~e~l~L~~~-~l~~l~~~A~--~vr~~~~~~-~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~ 124 (379)
T PLN02389 49 RDEIKEVYDS-PLLDLLFHGA--QVHRHAHDP-REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEA 124 (379)
T ss_pred HHHHHHHHcC-cHHHHHHHHH--HHHHHhcCC-CEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHH
Confidence 4677888854 8889999999 898877764 67888899988 99999999999997632 11 23678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchH
Q 018731 140 AKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~ 218 (351)
++.+.+.|++++.++....... .+..++++.++++.+++. ++.+.+ +.+.++++.++.|++||++++++++||.+
T Consensus 125 a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~--~l~i~~--s~G~l~~E~l~~LkeAGld~~~~~LeTs~ 200 (379)
T PLN02389 125 AKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM--GMEVCC--TLGMLEKEQAAQLKEAGLTAYNHNLDTSR 200 (379)
T ss_pred HHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC--CcEEEE--CCCCCCHHHHHHHHHcCCCEEEeeecCCh
Confidence 9999999999998742111001 111267899999999864 445432 34457999999999999999999999976
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC--CCCEEeeecccCC---CCCcc
Q 018731 219 RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP---TPLHL 293 (351)
Q Consensus 219 ~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l--g~d~i~i~~~l~P---Tp~~~ 293 (351)
+.++.++ +++++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.+++++ +++.+.++ ++.| ||++
T Consensus 201 ~~y~~i~-~~~s~e~rl~ti~~a~~--~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~-~l~P~~GTpL~- 275 (379)
T PLN02389 201 EYYPNVI-TTRSYDDRLETLEAVRE--AGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPIN-ALVAVKGTPLE- 275 (379)
T ss_pred HHhCCcC-CCCCHHHHHHHHHHHHH--cCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecc-cceecCCCcCC-
Confidence 6776665 46899999999999999 999999999999999999999999999999 58899994 6667 7775
Q ss_pred cccCCCCHHHHHHHHHHHHhcC---cceecc-----Ccc-cccccccc--hHHHHHH-Hhhhh
Q 018731 294 TVKEYVTPEKFDFWKAYGESIG---FRYVAS-----GPL-VRSSYRAG--ELFVKTM-VRERA 344 (351)
Q Consensus 294 ~~~~~v~~~e~~~~~~~~~~~G---~~~~~~-----~~~-~r~~~~a~--~~~~~~~-~~~~~ 344 (351)
....+++.++.+..++++.+- +..... ++. ....+.+| ..|+|+| |+.+-
T Consensus 276 -~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g 337 (379)
T PLN02389 276 -DQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPN 337 (379)
T ss_pred -CCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCC
Confidence 235688888888777766531 222211 221 23344554 4999998 86654
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=232.13 Aligned_cols=240 Identities=17% Similarity=0.227 Sum_probs=192.6
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeE---EEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA---TIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~---~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~ 139 (351)
..|++.|++..++..|+..|+ .+++.+.|+ .+.++ .++++|++|+.+|.||+++...+. ..++++++.+.
T Consensus 6 ~~e~l~Ll~~~~l~~L~~~A~--~vr~~~~g~--~v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~ 81 (348)
T PRK08445 6 KEEALDLIKNAPLKELGEMAL--ERKQELHPE--KITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKK 81 (348)
T ss_pred HHHHHHHhcCCCHHHHHHHHH--HHHHHHcCC--cEEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHHHH
Confidence 456788888789999999999 999998874 34443 347789999999999999874322 23577999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCHHHHHHHHHcCCCee
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~e~l~~L~~aG~~~i 210 (351)
++++.+.|.++|+++||+++.++ .+++.++++.|++.+|++.+.++++. +...+|.++.|+++|++++
T Consensus 82 ~~~a~~~g~~~i~~~gg~~~~~~---~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~ 158 (348)
T PRK08445 82 IEELLAIGGTQILFQGGVHPKLK---IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSI 158 (348)
T ss_pred HHHHHHcCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCC
Confidence 99999999999999998876554 68999999999999999988765432 2223899999999999999
Q ss_pred e-cchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec----
Q 018731 211 A-HNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ---- 284 (351)
Q Consensus 211 ~-~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~---- 284 (351)
. .|+|++++ ..+.+..++.+.++|+++++.+++ .||++++++|+|+|||.+|+.+++..+++++.++.++..
T Consensus 159 ~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~--~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~fi~~ 236 (348)
T PRK08445 159 PGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL--IGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAFILW 236 (348)
T ss_pred CCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEEecc
Confidence 7 58999876 556664357899999999999999 999999999999999999999999999999987644432
Q ss_pred ccCC--CCCccc--ccCCCCHHHHHHHHHHHHhc
Q 018731 285 YLQP--TPLHLT--VKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 285 ~l~P--Tp~~~~--~~~~v~~~e~~~~~~~~~~~ 314 (351)
.+.| ||+... .....++++..+..++++.+
T Consensus 237 ~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~ 270 (348)
T PRK08445 237 SFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLF 270 (348)
T ss_pred ccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 2244 787532 22457888888877777663
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=231.64 Aligned_cols=237 Identities=18% Similarity=0.264 Sum_probs=189.4
Q ss_pred HHHHHHhcC-CCHHHHHHHccCCCccccccCCCCceee--EEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHH
Q 018731 67 QEVKESLSS-LKLNTVCEEAQCPNIGECWNGGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTA 140 (351)
Q Consensus 67 ~~~~~ll~~-~~l~~l~~~A~~p~i~~~~~~~~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~ 140 (351)
+|++.+++. .++..|++.|+ .++++++|+ .+.. ...+++|++|+.+|.||+++...+. ..++++++.+.+
T Consensus 4 ~e~~~ll~~~~~~~~L~~~A~--~ir~~~~g~--~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~ 79 (343)
T TIGR03551 4 EEALELFEARGNLFELFRLAD--ELRRDIVGD--TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERA 79 (343)
T ss_pred HHHHHHHhCCChHHHHHHHHH--HHHHHhcCC--eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHHHHHH
Confidence 567777765 68899999999 999998874 3432 2345679999999999999764321 346889999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHHHHHcCCCeee
Q 018731 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 141 ~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+.|+++|.|+||+.+.+. .+++.++++.|++..|++.+.++++ .+..+++.++.|++||++++.
T Consensus 80 ~~~~~~G~~~i~l~gG~~p~~~---~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 80 AEAWKAGATEVCIQGGIHPDLD---GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHHCCCCEEEEEeCCCCCCC---HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCccccc
Confidence 9999999999999988654443 6889999999999888888877542 344589999999999999998
Q ss_pred c-chhchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCE------Eee
Q 018731 212 H-NIETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDI------LTL 282 (351)
Q Consensus 212 ~-~ies~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~------i~i 282 (351)
. +.|++++ +++.++ ++ .++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.++++++++. +++
T Consensus 157 ~~~~E~~~~~v~~~i~-~~~~~~~~~~~~i~~a~~--~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~ 233 (343)
T TIGR03551 157 GTAAEILDDEVRKVIC-PDKLSTAEWIEIIKTAHK--LGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPL 233 (343)
T ss_pred CcchhhcCHHHHHhcC-CCCCCHHHHHHHHHHHHH--cCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEec
Confidence 4 6788754 666665 44 499999999999999 9999999999999999999999999999999875 445
Q ss_pred ecccCC-CCCccc--ccCCCCHHHHHHHHHHHHhc
Q 018731 283 GQYLQP-TPLHLT--VKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 283 ~~~l~P-Tp~~~~--~~~~v~~~e~~~~~~~~~~~ 314 (351)
+|+.| ||++.. ....+++++..++.++++.+
T Consensus 234 -~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~ 267 (343)
T TIGR03551 234 -PFVHYNAPLYLKGMARPGPTGREDLKVHAIARIL 267 (343)
T ss_pred -cccCCCCccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 46555 887632 12456888888887777763
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=234.18 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=190.1
Q ss_pred chHHHHHHhcCCCHHHHHHHccCCCccccccCCCCcee--eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHH
Q 018731 65 RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIA--TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENT 139 (351)
Q Consensus 65 ~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~--~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~ 139 (351)
...|+..+++..+++.|+..|+ .+++.++++ +.+. ....+++|+.|+.+|.||++....+. ..++++|+.+.
T Consensus 8 s~ee~l~L~~~~~l~~L~~~A~--~iR~~~~~G-~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~ 84 (350)
T PRK05927 8 SFQEGLELFLYSPLEELQEHAD--SLRKQRYPQ-NTVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSL 84 (350)
T ss_pred CHHHHHHHhcCCCHHHHHHHHH--HHHHHHcCC-CeEEEEcccCCccchhhhcCCccCCccCCCCCccccccCHHHHHHH
Confidence 3467888888789999999999 999988743 3333 22234579999999999999874322 24678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHHHHHcCCCee
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i 210 (351)
++++.+.|++++.|+||..++. +.+++.++++.||+.+|++.+.++++ .+..+++.++.|+++|++++
T Consensus 85 a~~~~~~G~~~i~i~gG~~p~~---~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l 161 (350)
T PRK05927 85 MQRYVSAGVKTVLLQGGVHPQL---GIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTI 161 (350)
T ss_pred HHHHHHCCCCEEEEeCCCCCCC---CHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccC
Confidence 9999999999999999987554 47999999999999888887644432 35568999999999999999
Q ss_pred ec-chhchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc-
Q 018731 211 AH-NIETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL- 286 (351)
Q Consensus 211 ~~-~ies~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l- 286 (351)
.+ ++|++++ +++++. |. .+.++|+++++.+++ .|+++++++|+|+|||.+|+.+++..|++++-++-+|..|+
T Consensus 162 ~g~~~Et~~~~~~~~~~-p~k~~~~~rl~~i~~A~~--lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp 238 (350)
T PRK05927 162 PGGGAEILSERVRKIIS-PKKMGPDGWIQFHKLAHR--LGFRSTATMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIP 238 (350)
T ss_pred CCCCchhCCHHHhhccC-CCCCCHHHHHHHHHHHHH--cCCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeee
Confidence 98 8999887 456666 43 367999999999999 99999999999999999999999999999995544443333
Q ss_pred ---CC--CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 287 ---QP--TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 287 ---~P--Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
+| ||+........+++++.+..++++.+
T Consensus 239 ~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~ 271 (350)
T PRK05927 239 WSYKPGNTALGRRVPHQASPELYYRILAVARIF 271 (350)
T ss_pred cCcCCCCCccccCCCCCCCHHHHHHHHHHHHHh
Confidence 23 67652222258888888877777653
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=232.63 Aligned_cols=272 Identities=19% Similarity=0.208 Sum_probs=207.1
Q ss_pred hhccCCcch--HHHHHHhcCC---CHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC--CC
Q 018731 58 QKAPQGQRF--QEVKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP--AP 130 (351)
Q Consensus 58 ~~~~~g~~~--~~~~~ll~~~---~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~--~~ 130 (351)
+++.+|+.+ .|+..|++.. .++.|++.|+ .+++.++| +.+...++++.|++|+++|.||+++...+. ..
T Consensus 27 ~~~l~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G--~~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~ 102 (366)
T TIGR02351 27 ERALNKRHLSLEDFLALLSPAAEPYLEEMAQKAK--KLTRKRFG--NTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKK 102 (366)
T ss_pred HHHHhCCCCCHHHHHHHhCCCchHHHHHHHHHHH--HHHHHHcC--CEEEEEeeeeECccccCCCCcCCCCCCCCCccCc
Confidence 456667655 5688888754 5889999999 99998887 467677788899999999999999764321 23
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++++|+.+.++.+.+.|+++|.++||+++... +.+++.++++.|++.+|++++++. .++.+.++.|+++|++++
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~--~~e~l~eii~~Ik~~~p~i~Iei~----~lt~e~~~~Lk~aGv~r~ 176 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAA--GVEYIAEAIKLAREYFSSLAIEVQ----PLNEEEYKKLVEAGLDGV 176 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCC--CHHHHHHHHHHHHHhCCccccccc----cCCHHHHHHHHHcCCCEE
Confidence 57899999999999999999999888754332 378999999999998887777652 258999999999999999
Q ss_pred ecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhCCC------CEE
Q 018731 211 AHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDV------DIL 280 (351)
Q Consensus 211 ~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~lg~------d~i 280 (351)
++++||+++ .++.+. ++++++++++++++.+++ +|+. +++++|+|+||+.++..+++..++.++. ..|
T Consensus 177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~--aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv 254 (366)
T TIGR02351 177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAK--AGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISI 254 (366)
T ss_pred EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHH--cCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 999999865 565543 357899999999999999 9997 9999999999999999999999888876 567
Q ss_pred eeecccCCCCCcccccCCCCHHHHHHHHHHHHhc----Ccce-----eccC----cccccccccch-HHHHHHHhh
Q 018731 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI----GFRY-----VASG----PLVRSSYRAGE-LFVKTMVRE 342 (351)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~----G~~~-----~~~~----~~~r~~~~a~~-~~~~~~~~~ 342 (351)
++ ++++|.+..+.....+++.++.+.-...+.+ +... ...+ ++....+.|++ .++|+|++.
T Consensus 255 ~~-~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a~~~~~~G~y~~~ 329 (366)
T TIGR02351 255 SV-PRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSAGSSTEPGGYSSE 329 (366)
T ss_pred cc-cccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeeccCcccCCCCcCCC
Confidence 77 5788833233334678888887765544432 2221 1112 22223344454 677888864
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=221.66 Aligned_cols=233 Identities=17% Similarity=0.250 Sum_probs=184.4
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCC-----CCCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~-----~~~~~~eei~~~ 139 (351)
..|...++.. ++..++..|+ .+++.++++ +.+...+++++ |++|+.+|.||+++.... ...++++|+.+.
T Consensus 9 ~~e~~~l~~~-~l~~l~~~A~--~ir~~~fg~-~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~ 84 (345)
T PRK15108 9 LSQVTELFEK-PLLELLFEAQ--QVHRQHFDP-RQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 84 (345)
T ss_pred HHHHHHHHcc-cHHHHHHHHH--HHHHHhcCC-CEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHH
Confidence 3567777755 8888888999 997776664 46777888876 999999999999985321 122678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR 219 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~ 219 (351)
++.+.+.|+++|.++++... .+....+++.++++.+|+. ++.+. .+.+ .++++.++.|+++|+|++++++||...
T Consensus 85 a~~~~~~G~~~i~i~~~g~~-p~~~~~e~i~~~i~~ik~~--~i~v~-~s~G-~ls~e~l~~LkeAGld~~n~~leT~p~ 159 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAM--GLETC-MTLG-TLSESQAQRLANAGLDYYNHNLDTSPE 159 (345)
T ss_pred HHHHHHcCCCEEEEEecCCC-CCcchHHHHHHHHHHHHhC--CCEEE-EeCC-cCCHHHHHHHHHcCCCEEeeccccChH
Confidence 99988999999988544211 1223468999999999975 45543 3444 458999999999999999999999555
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC--CCCEEeeecccCC---CCCccc
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP---TPLHLT 294 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l--g~d~i~i~~~l~P---Tp~~~~ 294 (351)
.+..++ +.+++++++++++.+++ .|+.+++++|+|+|||.+|+.+++..++++ +++.+++ +++.| ||+.
T Consensus 160 ~f~~I~-~~~~~~~rl~~i~~a~~--~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~-~~~~P~~gTpl~-- 233 (345)
T PRK15108 160 FYGNII-TTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPI-NMLVKVKGTPLA-- 233 (345)
T ss_pred hcCCCC-CCCCHHHHHHHHHHHHH--cCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEe-CCccCCCCCCCC--
Confidence 676665 47899999999999999 999999999999999999999999999999 6788999 46666 7775
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 018731 295 VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 295 ~~~~v~~~e~~~~~~~~~~ 313 (351)
....+++.++.+.-++++.
T Consensus 234 ~~~~~~~~e~lr~iAi~Rl 252 (345)
T PRK15108 234 DNDDVDAFDFIRTIAVARI 252 (345)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 2345788888887776665
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=226.73 Aligned_cols=238 Identities=19% Similarity=0.247 Sum_probs=185.6
Q ss_pred hHHHHHHhcCCCHHHHHHHccCCCcccccc-CCCCceee--EEEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHH
Q 018731 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWN-GGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENT 139 (351)
Q Consensus 66 ~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~-~~~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~ 139 (351)
..++..+++..+++.|+..|+ .+++.++ | +.+.+ ...+++|++|+.+|.||+++...+ ...++++++.+.
T Consensus 5 ~~~~~~ll~~~~~~~l~~~A~--~vr~~~~~g--~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~ 80 (340)
T TIGR03699 5 REEALELYKEADLLALGALAD--EVRRRRHPG--NIVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQK 80 (340)
T ss_pred HHHHHHHccCCcHHHHHHHHH--HHHHHhcCC--CeEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHHHH
Confidence 356777888778999999999 9999988 6 45543 334557999999999999765432 224678999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHHHHHHHHHcCCCee
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i 210 (351)
++.+.+.|+++|+|+||..+.+. .+++.++++.|++..|++.+.++++ .+..+++.++.|+++|++++
T Consensus 81 ~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~ 157 (340)
T TIGR03699 81 IEELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSI 157 (340)
T ss_pred HHHHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcC
Confidence 99998999999999998755443 6788999999999877776543322 23335899999999999999
Q ss_pred ec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee-----
Q 018731 211 AH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG----- 283 (351)
Q Consensus 211 ~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~----- 283 (351)
.+ +.|++++ +++.+..++.++++++++++.+++ .|+.+++++|+|+|||.+++.+++.++++++++...+.
T Consensus 158 ~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~--~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~ 235 (340)
T TIGR03699 158 PGGGAEILSDRVRKIISPKKISSEEWLEVMETAHK--LGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPW 235 (340)
T ss_pred CCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEee
Confidence 86 7899855 566554235699999999999999 99999999999999999999999999999998763332
Q ss_pred cccCC-CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 284 QYLQP-TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 284 ~~l~P-Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
+|+.+ ||++ .....++++..+..++++.+
T Consensus 236 ~f~p~~tpl~--~~~~~~~~e~l~~iA~~Rl~ 265 (340)
T TIGR03699 236 TFQPGNTELG--KKRPATSTEYLKVLAISRIF 265 (340)
T ss_pred cccCCCCccc--CCCCCCHHHHHHHHHHHHHc
Confidence 34422 7775 23457888888877777653
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=226.62 Aligned_cols=250 Identities=18% Similarity=0.238 Sum_probs=190.9
Q ss_pred HhhhccCCcch--HHHHHHhcCCC---HHHHHHHccCCCccccccCCCCceee--EEEEeeccCCCCCCcCcccCCCCCC
Q 018731 56 LRQKAPQGQRF--QEVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRNP 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~~~~---l~~l~~~A~~p~i~~~~~~~~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~~~ 128 (351)
+.+++.+|+++ .++..+++..+ ++.|+..|+ .+++.++|+ .+.. ...+++|+.|+.+|.||++....+.
T Consensus 10 ~~~~~~~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~--~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~ 85 (371)
T PRK07360 10 ILERARKGKDLSKEDALELLETTEPRRIFEILELAD--RLRKEQVGD--TVTYVVNRNINFTNICEGHCGFCAFRRDEGD 85 (371)
T ss_pred HHHHHhcCCCCCHHHHHHHhcCCChHHHHHHHHHHH--HHHHHhcCC--eEEEEeccCcccchhhhcCCccCCcccCCCC
Confidence 34677778766 46888887654 899999999 999998874 4433 2345679999999999999875322
Q ss_pred ---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCH
Q 018731 129 ---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDL 196 (351)
Q Consensus 129 ---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~ 196 (351)
..++.+++.+.++.+.+.|++++.|+||..+.+. ..+++.++++.||+.+|++.+.++++ .+..++
T Consensus 86 ~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~--~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~ 163 (371)
T PRK07360 86 HGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD--SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYE 163 (371)
T ss_pred CCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC--cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHH
Confidence 2367899999999999999999999999765443 26899999999999888888876543 345578
Q ss_pred HHHHHHHHcCCCeeec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
+.++.|++||++++.- +.|.+++ +++.+...+.+.++++++++.+++ .|+.+++++|+|+|||.+|+.+++.++++
T Consensus 164 e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~--~Gl~~~sg~i~G~gEt~edrv~~l~~lr~ 241 (371)
T PRK07360 164 EVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHK--LGLPTTSTMMYGHVETPEHRIDHLLILRE 241 (371)
T ss_pred HHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCceeeEEeeCCCCHHHHHHHHHHHHH
Confidence 9999999999999963 3455544 455555224599999999999999 99999999999999999999999999999
Q ss_pred CCCCEEeee-----cccCC-CCCccc--ccCCCCHHHHHHHHHHHHh
Q 018731 275 IDVDILTLG-----QYLQP-TPLHLT--VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 275 lg~d~i~i~-----~~l~P-Tp~~~~--~~~~v~~~e~~~~~~~~~~ 313 (351)
+++++.+|. +|+.| ||+... .....++.+..++-++++.
T Consensus 242 l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl 288 (371)
T PRK07360 242 IQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRI 288 (371)
T ss_pred hchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHH
Confidence 999874432 45534 887521 1123466666666666665
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=237.46 Aligned_cols=249 Identities=19% Similarity=0.270 Sum_probs=198.0
Q ss_pred HhhhccCCcch--HHHHHHhc--CCCHHHHHHHccCCCccccccCCCCcee--eEEEEeeccCCCCCCcCcccCCCCC--
Q 018731 56 LRQKAPQGQRF--QEVKESLS--SLKLNTVCEEAQCPNIGECWNGGGDGIA--TATIMLLGDTCTRGCRFCAVKTSRN-- 127 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~--~~~l~~l~~~A~~p~i~~~~~~~~~~~~--~~~~i~~s~gC~~~C~FC~~~~~~~-- 127 (351)
|.+++.+|+++ .+++.|++ ..+++.|+..|+ .+++.++|+ .+. ....+++|+.|+.+|.||+|...+.
T Consensus 477 l~~~~~~g~~ls~~eal~Ll~~~~~~l~~L~~~Ad--~iR~~~~G~--~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~ 552 (843)
T PRK09234 477 LRAAERDPAGLTDDEALALFTADGPALEAVCRLAD--DLRRDVVGD--DVTYVVNRNINFTNICYTGCRFCAFAQRKTDA 552 (843)
T ss_pred HHHHHhcCCCCCHHHHHHHHcCCchhHHHHHHHHH--HHHHHhcCC--eEEEEEeeceecCCCCCCCCcccccccCCCCC
Confidence 44566667665 56888886 458999999999 999998874 342 2344567999999999999987532
Q ss_pred -CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec---------CCCCCHH
Q 018731 128 -PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLR 197 (351)
Q Consensus 128 -~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~---------~~~~~~e 197 (351)
...++++|+.+.++++.+.|+++|.++||..+++. .+++.++++.||+.+|++.|++++| .+...+|
T Consensus 553 ~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e 629 (843)
T PRK09234 553 DAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIRE 629 (843)
T ss_pred CcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHH
Confidence 23467899999999999999999999998865554 6899999999999999999988765 2345789
Q ss_pred HHHHHHHcCCCeeec-chhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~-~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l 275 (351)
.+..|++||++++.+ +.|.+++ +++.++..+.+.++|+++++.+++ .||.+++++|+|+|||.+|+.+++.+|+++
T Consensus 630 ~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~--lGi~~~stmm~G~~Et~edrv~hl~~LreL 707 (843)
T PRK09234 630 WLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHE--VGLRSSSTMMYGHVDTPRHWVAHLRVLRDI 707 (843)
T ss_pred HHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHH--cCCCcccceEEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999987 4455654 566666235689999999999999 999999999999999999999999999999
Q ss_pred CCC------EEeeecccCC-CCCccc--ccCCCCHHHHHHHHHHHHhc
Q 018731 276 DVD------ILTLGQYLQP-TPLHLT--VKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 276 g~d------~i~i~~~l~P-Tp~~~~--~~~~v~~~e~~~~~~~~~~~ 314 (351)
+.+ +|++ +|+.| ||++.. .....++.+..++.++++.+
T Consensus 708 q~~tgGf~~fIPl-~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~ 754 (843)
T PRK09234 708 QDRTGGFTEFVPL-PFVHQNAPLYLAGAARPGPTHRENRAVHALARIM 754 (843)
T ss_pred CcccCCeeeeeec-cccCCCCCcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 985 5556 56645 776421 23457888888877777663
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=221.33 Aligned_cols=242 Identities=17% Similarity=0.271 Sum_probs=191.7
Q ss_pred HhhhccCCcch--HHHHHHhcCC---CHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC--
Q 018731 56 LRQKAPQGQRF--QEVKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP-- 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~~~---~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~-- 128 (351)
+.+++.+|+.+ .++..||+.. .++.|++.|+ .+++.+.| |.+...+++++|+.|+++|.||+|...++.
T Consensus 36 il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~--~ir~~~~G--n~I~lfapLyiSN~C~n~C~YCgfs~~n~~i~ 111 (469)
T PRK09613 36 ILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAR--EIKEKIYG--NRIVLFAPLYISNYCVNNCVYCGFRRSNKEIK 111 (469)
T ss_pred HHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHH--HHHHHHcC--CEEEEEEeccccCCCCCCCccCCCccCCCCCC
Confidence 33566666555 5688888764 4788999999 99999887 467788888999999999999999875432
Q ss_pred -CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC------CcEEEEeecCCCCCHHHHHH
Q 018731 129 -APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP------DIMVECLTSDFRGDLRAVET 201 (351)
Q Consensus 129 -~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p------~i~i~~~~~~~~~~~e~l~~ 201 (351)
..++++|+.+.++.+.+.|++++.|.||+.+ ++...+++.++++.|++..+ .++|++ +.++.+.++.
T Consensus 112 r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~ini----g~lt~eey~~ 185 (469)
T PRK09613 112 RKKLTQEEIREEVKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNI----APTTVENYKK 185 (469)
T ss_pred ceECCHHHHHHHHHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEe----ecCCHHHHHH
Confidence 2367899999999999999999998777752 33347999999999998532 233332 3469999999
Q ss_pred HHHcCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhC--
Q 018731 202 LVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSI-- 275 (351)
Q Consensus 202 L~~aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~l-- 275 (351)
|+++|++++.+..||.++ .++.+. +++++|++++++++.+++ +|+. |++++|+|+|++.+|...++..++.+
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~--aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~ 263 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME--AGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEE 263 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH--cCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999866 455543 357899999999999999 9997 99999999999999999998888877
Q ss_pred ----CCCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHH
Q 018731 276 ----DVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 276 ----g~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~ 311 (351)
|++.|++ ++++| ||+.. ....++++++.++....
T Consensus 264 ~~gvgp~tIsv-prl~P~~Gtpl~~-~~~~vsd~e~lriiA~~ 304 (469)
T PRK09613 264 RFGVGPHTISV-PRLRPADGSDLEN-FPYLVSDEDFKKIVAIL 304 (469)
T ss_pred hhCCCCccccc-cceecCCCCCccc-CCCCCCHHHHHHHHHHH
Confidence 6888999 68888 77641 12347888887654433
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-26 Score=211.53 Aligned_cols=256 Identities=20% Similarity=0.230 Sum_probs=177.7
Q ss_pred CHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCCC-----CCCCCchhHHHHHHHHHhCCCcE
Q 018731 77 KLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENTAKAIASWGVDY 150 (351)
Q Consensus 77 ~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~~-----~~~~~~eei~~~~~~~~~~G~~~ 150 (351)
++..+...|. .+++....+ |.+...+++.+ |++|+++|.||+++.... ...+++++++++++.+.+.|++.
T Consensus 5 ~~~~l~~~a~--~~~~~~~~~-~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~ 81 (296)
T TIGR00433 5 PLLDLLYEAF--QIHRKHFDP-RKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATR 81 (296)
T ss_pred cHHHHHHHHH--HHHHHhcCC-CEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCE
Confidence 6666776676 665553332 57778888886 999999999999976431 12256788999998888899998
Q ss_pred EEE-eccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCC
Q 018731 151 IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229 (351)
Q Consensus 151 I~l-tgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~ 229 (351)
+++ ++|..+ ....-.+.+.++.+.+++. ++.+.+ +. +.+++|.++.|+++|++.+.+++|+.++.++.++ +++
T Consensus 82 ~~l~~~g~~~-~~~~~~~~~~~i~~~~~~~--~i~~~~-~~-g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~ 155 (296)
T TIGR00433 82 FCLVASGRGP-KDREFMEYVEAMVQIVEEM--GLKTCA-TL-GLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STH 155 (296)
T ss_pred EEEEEecCCC-ChHHHHHHHHHHHHHHHhC--CCeEEe-cC-CCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCC
Confidence 755 444432 2210022344444433332 555533 33 3569999999999999999999995445676666 578
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHH
Q 018731 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDF 306 (351)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~ 306 (351)
++++++++++.+++ .|+.+++++|+|+|||.+++.++++++++++++.+.++ .+.| |+++. ...++.+++.+
T Consensus 156 s~~~~~~ai~~l~~--~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~-~l~p~~gT~l~~--~~~~s~~~~~~ 230 (296)
T TIGR00433 156 TYDDRVDTLENAKK--AGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPIN-FLVKIKGTPLAD--NKELSADDALK 230 (296)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEee-eeEEcCCCccCC--CCCCCHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999885 5556 77652 34567777777
Q ss_pred HHHHHHhc-C---cc-----eeccCccccc-ccc--cchHHHHHHHhhhhhh
Q 018731 307 WKAYGESI-G---FR-----YVASGPLVRS-SYR--AGELFVKTMVRERAKN 346 (351)
Q Consensus 307 ~~~~~~~~-G---~~-----~~~~~~~~r~-~~~--a~~~~~~~~~~~~~~~ 346 (351)
+.+.++.+ . .+ +...+..... ... |+..++|+||+..-++
T Consensus 231 ~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~ 282 (296)
T TIGR00433 231 TIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNP 282 (296)
T ss_pred HHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCC
Confidence 66665542 1 11 1111222111 222 4457788898765543
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=209.69 Aligned_cols=207 Identities=17% Similarity=0.239 Sum_probs=163.5
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
...++++|++|+++|.||+++...+ ...++++++.+.++.+.+.|+++|.|+||+.+.+. .+++.++++.|++.
T Consensus 5 ~n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 5 VNRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQE 81 (309)
T ss_pred ceeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHH
Confidence 4456788999999999999986432 23467899999999988899999999988754333 68899999999998
Q ss_pred CCCcEEEEeec---------CCCCCHHHHHHHHHcCCCeee-cchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 018731 180 KPDIMVECLTS---------DFRGDLRAVETLVHSGLDVFA-HNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (351)
Q Consensus 180 ~p~i~i~~~~~---------~~~~~~e~l~~L~~aG~~~i~-~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi 248 (351)
.|++.+.++++ .+..+++.++.|++||++++. .+.|++++ +++.+..++.++++++++++.+++ .|+
T Consensus 82 ~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~--~Gi 159 (309)
T TIGR00423 82 FPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR--LGI 159 (309)
T ss_pred CCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCC
Confidence 88888876543 344468999999999999997 59999865 565564235699999999999999 999
Q ss_pred eEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee-----cccCC-CC-CcccccCCCCHHHHHHHHHHHHhc
Q 018731 249 ITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG-----QYLQP-TP-LHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 249 ~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~-----~~l~P-Tp-~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
.+++++|+|+|||.||+.+++.++++++.+...|. +|+.+ || +........++.+..+..++++.+
T Consensus 160 ~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~ 232 (309)
T TIGR00423 160 PTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRIL 232 (309)
T ss_pred CceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998754432 34322 77 432122557788888877777653
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=224.38 Aligned_cols=271 Identities=18% Similarity=0.256 Sum_probs=191.3
Q ss_pred ecCCCCC-cccCCCcceeccccCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCce
Q 018731 23 CESRTDT-VKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGI 101 (351)
Q Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~ 101 (351)
|-+.-.. ++......+.||+++|++...++|+.+......+....++ ... -..+ ....|..+ .++
T Consensus 146 Cmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~---~~~--~~~~--~~~~p~~~---~~~---- 211 (509)
T PRK14327 146 CMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEV---WSK--EGDV--IENLPKVR---EGN---- 211 (509)
T ss_pred chhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeec---ccc--cccc--cccccccc---CCC----
Confidence 4443333 2344456789999999999999999886543322211111 000 0000 01112111 233
Q ss_pred eeEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC--Cc-HHHHHHHHHHHH
Q 018731 102 ATATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GG-SGHFARTVKAMK 177 (351)
Q Consensus 102 ~~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--~~-~~~~~~li~~ik 177 (351)
+.+++.+++|||++|+||.++..++.. ..++++++++++.+.+.|+++|+|+|.+-..+.. .+ ...+.++++.|.
T Consensus 212 -~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 212 -IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred -eEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 789999999999999999998866543 3567999999999999999999999987433321 01 135788888887
Q ss_pred HhC-CCcEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 178 KQK-PDIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 178 ~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+.. +.+++.+..|.. ++++.++.++++| +.++.+++||+++ +.+.++ ++++.++++++++.+++..+|+.++++
T Consensus 291 ~~~i~~ir~~s~~P~~-i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~i~i~td 368 (509)
T PRK14327 291 KIDIPRVRFTTSHPRD-FDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPNVALTTD 368 (509)
T ss_pred hCCCceEEEeecCccc-CCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCcEEeee
Confidence 642 234444444544 4899999999999 7799999999865 556665 579999999999999997779999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH----HHHHHHHHHH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYG 311 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~----~e~~~~~~~~ 311 (351)
+|+|| |||++++.++++++++++++.++++.|. +| ||++.. ...+++ +.+.++.++.
T Consensus 369 iIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~-~~~vp~~vk~~R~~~l~~l~ 432 (509)
T PRK14327 369 IIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKM-KDNVPMEVKKERLQRLNALV 432 (509)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhC-cCCCCHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999986555 55 888632 234544 3444444433
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=211.80 Aligned_cols=253 Identities=18% Similarity=0.282 Sum_probs=193.9
Q ss_pred hhHhhhccCCcch--HHHHHHhcCCCHHHHHHHccCCCcc-ccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC--
Q 018731 54 EWLRQKAPQGQRF--QEVKESLSSLKLNTVCEEAQCPNIG-ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP-- 128 (351)
Q Consensus 54 ~~i~~~~~~g~~~--~~~~~ll~~~~l~~l~~~A~~p~i~-~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~-- 128 (351)
+-+.+++.+++++ .+...|+...++.+|...|+ .++ ....+..+.+....++++||.|.++|.||+|...++.
T Consensus 9 ~~~~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~--~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~ 86 (370)
T COG1060 9 DEIVEKALNGERLTREDALALLSPADLEELEELAD--KARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPGDPK 86 (370)
T ss_pred HHHHHHHhccCCCCHHHHHHHhccCcHHHHHHHHH--HHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCCCCcc
Confidence 3444677788766 46888999888888888888 777 4444543444556667889999999999999986532
Q ss_pred -CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC---------CCCCHHH
Q 018731 129 -APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRA 198 (351)
Q Consensus 129 -~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~---------~~~~~e~ 198 (351)
..++++|+.++++++.+.|+++|.|+||+.+++. .+++.++++.|++.+|++.+.++++. ....+|.
T Consensus 87 ~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~---~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~ 163 (370)
T COG1060 87 AYTLSPEEILEEVREAVKRGITEVLIVGGEHPELS---LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEV 163 (370)
T ss_pred ccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcc---hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHH
Confidence 3478899999999999999999999999986665 67999999999999999888877753 2234688
Q ss_pred HHHHHHcCCCeeecchhc-hHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 199 VETLVHSGLDVFAHNIET-VKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 199 l~~L~~aG~~~i~~~ies-~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
++.|++||+|.+..+.+. +++ .++.+.+++.++++|+++++.|++ .||..++++++|.+||.+|+.+++..+++++
T Consensus 164 l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~--lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ 241 (370)
T COG1060 164 LKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHR--LGIPTTATMLLGHVETREDRIDHLEHIRDLQ 241 (370)
T ss_pred HHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCccceeEEEecCCHHHHHHHHHHHHHHH
Confidence 999999999999986554 444 445565567899999999999999 9999999999999999999999999999886
Q ss_pred CCEEeeecc----cCC--CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 277 VDILTLGQY----LQP--TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 277 ~d~i~i~~~----l~P--Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
-..-++..| ++| ++.........+..++.+.-++++.
T Consensus 242 ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi 284 (370)
T COG1060 242 DETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARI 284 (370)
T ss_pred HHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHH
Confidence 333222222 255 4411123345666777766666654
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=216.81 Aligned_cols=197 Identities=17% Similarity=0.250 Sum_probs=156.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC-cHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~-~~~~~~~li~~ik~~~ 180 (351)
+.+++.+++|||++|+||.++..++..+ .++++++++++.+.+.|+++|+|+|++...+.+. ....+.++++.+.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 5788999999999999999998665443 5568999999999999999999999885444321 1235788888887654
Q ss_pred CCcEEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee
Q 018731 181 PDIMVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (351)
Q Consensus 181 p~i~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I 255 (351)
++.++. +..|.. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.++..++++.+++..+|+.+.+++|
T Consensus 229 ~~~rir~~~~~p~~-l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pgi~i~td~I 306 (445)
T PRK14340 229 PEMRIRFTTSHPKD-ISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPGVTLSTDLI 306 (445)
T ss_pred CCcEEEEccCChhh-cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEeccEE
Confidence 444444 344544 489999999997 79999999999865 555565 57899999999999999666999999999
Q ss_pred eeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+ |||++++.++++++++++++.++++.|. +| |+++......+++
T Consensus 307 vGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 307 AGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 999 9999999999999999999999987565 55 8876312344554
|
|
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-25 Score=215.75 Aligned_cols=187 Identities=14% Similarity=0.235 Sum_probs=151.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
..+++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|+++|+|+|.+...+.. ....|.++++.+.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~-~~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKE-QSTDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccC-CcccHHHHHHHHhcCCC
Confidence 5788999999999999999998765533 567999999999999999999999987654432 12457888887765421
Q ss_pred --CcEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee
Q 018731 182 --DIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (351)
Q Consensus 182 --~i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv 256 (351)
.+++....|.. ++++.++.++++| +..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.+++|+
T Consensus 233 ~~~ir~~~~~p~~-~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~i~i~td~Iv 310 (449)
T PRK14332 233 IERIRFTSPHPKD-FPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPDVGITTDIIV 310 (449)
T ss_pred cceEEEECCCccc-CCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 13333333443 4889999999998 8999999999865 555565 578999999999999997779999999999
Q ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 257 GL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 257 Gl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
|+ |||++++.++++++++++++.++++.|. +| ||.+
T Consensus 311 GfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~ 349 (449)
T PRK14332 311 GFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAK 349 (449)
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhH
Confidence 99 9999999999999999999999997776 55 8876
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=209.29 Aligned_cols=220 Identities=11% Similarity=0.148 Sum_probs=167.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC--CCC----CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP--APP----DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~--~~~----~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
+.++.+.-++|+.+|.||.+.+.... ... +.+++..+++.+....++.|+|.||+|..++ .+.+.++++.+
T Consensus 6 ~~~lYiHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i 82 (353)
T PRK05904 6 TKHLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTI 82 (353)
T ss_pred eeEEEEEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHH
Confidence 67777789999999999999763211 111 1234444443332345789999999998776 47888899999
Q ss_pred HHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EE
Q 018731 177 KKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TK 251 (351)
Q Consensus 177 k~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~ 251 (351)
++.++ ++++++ .|+. ++++.++.|+++|+++|++|+||+++ +.+.++ +.++.++.+++++.+++ .|+. ++
T Consensus 83 ~~~~~~~~eitiE~-nP~~-lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~--~G~~~v~ 157 (353)
T PRK05904 83 KPYVDNNCEFTIEC-NPEL-ITQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHK--NGIYNIS 157 (353)
T ss_pred HHhcCCCCeEEEEe-ccCc-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEE
Confidence 88754 245554 3444 48999999999999999999999865 566665 57999999999999999 9997 99
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH----HHHHHHHHHHHhcCcceeccCcc
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~----~e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
.++|+|+ |||.+++.++++++.+++++++.++.+. .| |+++.... .+++ +.+..+.+.++..||.+|+.++|
T Consensus 158 ~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~-~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 236 (353)
T PRK05904 158 CDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHY-TIDEDKEAEQLNYIKAKFNKLNYKRYEVSNW 236 (353)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCC-CCChHHHHHHHHHHHHHHHHcCCcEEechhh
Confidence 9999999 9999999999999999999999997543 55 87763221 2233 34455677788899999999999
Q ss_pred cc-ccccc
Q 018731 325 VR-SSYRA 331 (351)
Q Consensus 325 ~r-~~~~a 331 (351)
++ .++.+
T Consensus 237 a~~~~~~~ 244 (353)
T PRK05904 237 TNNFKYIS 244 (353)
T ss_pred cCCCCccc
Confidence 98 44443
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=200.88 Aligned_cols=221 Identities=12% Similarity=0.144 Sum_probs=165.8
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCCCC----CchhHHHHHHHH----HhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPAPP----DPMEPENTAKAI----ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~~~----~~eei~~~~~~~----~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
++.+.-++|+.+|.||.+.+....... +.+.+.++++.. ...+++.|+|+||+|..++ .+.+.++++.+
T Consensus 8 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l 84 (378)
T PRK05660 8 SLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGV 84 (378)
T ss_pred EEEEEeCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHH
Confidence 556668999999999999764321112 223333333321 1246889999999997776 48899999999
Q ss_pred HHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EE
Q 018731 177 KKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TK 251 (351)
Q Consensus 177 k~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~ 251 (351)
++.++ +..+++.++...++.+.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .|+. ++
T Consensus 85 ~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~--~G~~~v~ 161 (378)
T PRK05660 85 RARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQG--LGLRSFN 161 (378)
T ss_pred HHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCeEE
Confidence 98653 23343333333358999999999999999999999876 566665 57999999999999999 9996 79
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH----HHHHHHHHHHhcCcceeccCcc
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE----KFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~----e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
.++|+|+ |+|.+++.++++++.++++++++++++. .| |+++.......+++ .+....+.++..||.+++..+|
T Consensus 162 ~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 162 LDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
Confidence 9999999 9999999999999999999999997554 45 87763222223332 3444566778889999999999
Q ss_pred ccccccc
Q 018731 325 VRSSYRA 331 (351)
Q Consensus 325 ~r~~~~a 331 (351)
++.++.+
T Consensus 242 a~~~~~~ 248 (378)
T PRK05660 242 AKPGYQC 248 (378)
T ss_pred cCCChhH
Confidence 9876543
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=208.12 Aligned_cols=198 Identities=15% Similarity=0.247 Sum_probs=156.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-Cc-----HHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GG-----SGHFARTVK 174 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~-----~~~~~~li~ 174 (351)
+.+++.+++|||++|+||.++..++.. ..+++++.++++.+.+.|+++|+|+|.+.+.+. + .+ ...+.++++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 678999999999999999998866543 356799999999999999999999987643331 1 11 236888888
Q ss_pred HHHHhCCCcEEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 175 AMKKQKPDIMVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 175 ~ik~~~p~i~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
.+.+..++.++. +..|+. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.++.+++++.+++..+|+.
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~-l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~~~ 325 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKD-MTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPDCG 325 (467)
T ss_pred HHHhcCCCcEEEEecCCccc-CCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCE
Confidence 888754444444 334444 488999999998 89999999999876 555665 57899999999999998667889
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+.+++|+|+ |||.+++.++++++++++++.++++.|. .| |+++......++++
T Consensus 326 i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~ 381 (467)
T PRK14329 326 ISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEE 381 (467)
T ss_pred EEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHH
Confidence 999999999 9999999999999999999999887665 55 88873223345553
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=212.45 Aligned_cols=187 Identities=18% Similarity=0.280 Sum_probs=149.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
+.+++.+++|||++|+||.++..++.. .+++++++++++.+.+.|+++|+|+|.+-..+. + .+...+.++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999876543 356799999999999999999999987643321 0 1234678888887754
Q ss_pred CCC---cEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPD---IMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~---i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
++ +++....|.. ++++.++.|+++| +..+.+++||.++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 237 -~~l~~ir~~~~~p~~-~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 237 -DGLERVRFTSPHPAE-FTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred -CCccEEEEeccChhh-CCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 23 3443333443 4899999999998 8999999999865 555565 579999999999999996679999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
+|+|+ |||.+++.++++++++++++.+.++.|. .| |+++
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~ 355 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAA 355 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHH
Confidence 99999 9999999999999999999988876554 45 8887
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=198.27 Aligned_cols=217 Identities=12% Similarity=0.181 Sum_probs=163.8
Q ss_pred EEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 106 IMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 106 ~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
+.+.-++|+.+|.||.+........ .+.+.+.++++...+ .+++.|+|+||+|..++ .+++.++++.|++
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~ 79 (350)
T PRK08446 3 LYIHIPFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISP 79 (350)
T ss_pred EEEEeCCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHH
Confidence 3445789999999999976421111 234455555553322 36889999999987666 4788888888877
Q ss_pred hC-CC--cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEe
Q 018731 179 QK-PD--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSS 253 (351)
Q Consensus 179 ~~-p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~ 253 (351)
.. ++ +++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.++.+++.++++.+++ .|+. ++.+
T Consensus 80 ~~~~~~eitiE~-nP~~-~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~--~g~~~v~iD 154 (350)
T PRK08446 80 YLSKDCEITTEA-NPNS-ATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKK--AGFENISID 154 (350)
T ss_pred hcCCCceEEEEe-CCCC-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCEEEEE
Confidence 52 23 44544 3443 58999999999999999999999976 455554 58999999999999999 9995 8999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH-HHHHHHHHHHHhcCcceeccCccccccc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP-EKFDFWKAYGESIGFRYVASGPLVRSSY 329 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~-~e~~~~~~~~~~~G~~~~~~~~~~r~~~ 329 (351)
+|+|+ |||.+++.++++++.++++++++++.+. .| |++........+. +.+....+.+...||.+|+..+|++ ++
T Consensus 155 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~-~~ 233 (350)
T PRK08446 155 LIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK-NY 233 (350)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC-cc
Confidence 99999 9999999999999999999999997543 34 8876433222333 3455567788889999999999998 44
Q ss_pred cc
Q 018731 330 RA 331 (351)
Q Consensus 330 ~a 331 (351)
.+
T Consensus 234 ~~ 235 (350)
T PRK08446 234 QC 235 (350)
T ss_pred hh
Confidence 43
|
|
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=201.77 Aligned_cols=196 Identities=18% Similarity=0.315 Sum_probs=154.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC--cHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~--~~~~~~~li~~ik~~ 179 (351)
..+++.+++|||++|+||..+..++.. .++++++.++++.+.+.|+++|+|+|.+...+.+. +..++.++++.+++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 567888999999999999998765543 35679999999999999999999998764333210 124688899988864
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..|+. ++++.++.|+++| +..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 218 -~~~~~ir~~~~~p~~-~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 218 -PGIKRIRLSSIDPED-IDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred -CCCcEEEEeCCChhh-CCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 343 3333 23433 4899999999987 8899999999876 556665 578999999999999987789999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+|+|+ |||.|++.++++++.+++++.++++.|. .| ||++.. ...++++
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~-~~~v~~~ 345 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTM-KDKVPET 345 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhC-CCCCCHH
Confidence 99999 9999999999999999999999997554 44 888732 2344443
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=195.53 Aligned_cols=218 Identities=22% Similarity=0.260 Sum_probs=173.5
Q ss_pred CCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCC--CCCcCcccCCCCCC------CCCCchhHHHHHHHHHhC
Q 018731 75 SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCT--RGCRFCAVKTSRNP------APPDPMEPENTAKAIASW 146 (351)
Q Consensus 75 ~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~--~~C~FC~~~~~~~~------~~~~~eei~~~~~~~~~~ 146 (351)
..++..|++.|+ .+++.++| |.+...++++.|++|+ .+|.||+++..++. ..+++++++++++.+.+.
T Consensus 3 ~~~~~~L~~~A~--~ir~~~fG--~~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~ 78 (350)
T PRK06267 3 SEEILENSIKAF--KLTEKHHG--NIVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRI 78 (350)
T ss_pred chHHHHHHHHHH--HHHHHHcC--CeEEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHc
Confidence 346788899999 99999997 5788889999999999 99999999874321 235779999999999999
Q ss_pred CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc
Q 018731 147 GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR 225 (351)
Q Consensus 147 G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r 225 (351)
|++.++++||.+ +. .+.+.++++.+++.. +..+.+ +. +..+.+.+..+..+|+ .+++||.++ .+..++
T Consensus 79 Gv~~~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~~-s~-G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~ 147 (350)
T PRK06267 79 GWKLEFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQYL-NV-GIIDFLNINLNEIEGV---VGAVETVNPKLHREIC 147 (350)
T ss_pred CCCEEEEecCCC--CC---HHHHHHHHHHHHHhh-CCceEe-ec-ccCCHHHHhhccccCc---eeeeecCCHHHHHhhC
Confidence 999899999985 44 367788888887652 322322 22 3347777766666665 468999865 577776
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHH
Q 018731 226 DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPE 302 (351)
Q Consensus 226 ~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~ 302 (351)
+++++++++++++.+++ .|+.+++++|+|+|||.+|+.++++++++++++.+.++ .+.| ||+. ....++++
T Consensus 148 -~~~s~ed~~~~l~~ak~--aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~-~L~P~pGTp~~--~~~~~s~~ 221 (350)
T PRK06267 148 -PGKPLDKIKEMLLKAKD--LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFY-SLNPQKGTIFE--NKPSVTTL 221 (350)
T ss_pred -CCCCHHHHHHHHHHHHH--cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEE-eeeECCCCcCC--CCCCCCHH
Confidence 67899999999999999 99999999999999999999999999999999998885 5556 7765 24568888
Q ss_pred HHHHHHHHHHh
Q 018731 303 KFDFWKAYGES 313 (351)
Q Consensus 303 e~~~~~~~~~~ 313 (351)
++.++-..++.
T Consensus 222 e~lr~ia~~Rl 232 (350)
T PRK06267 222 EYMNWVSSVRL 232 (350)
T ss_pred HHHHHHHHHHH
Confidence 99888777765
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=199.88 Aligned_cols=196 Identities=14% Similarity=0.233 Sum_probs=154.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
+.+++.+++|||++|+||.++..++.. ..+++++.++++.+.+.|+++|+|+|.+...+. + .+...+.++++.+++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 678999999999999999999866543 356799999999999999999999998743331 1 1124688899988874
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..|+. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 204 -~~~~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pgi~i~~d 280 (418)
T PRK14336 204 -PGLLRIRFLTSHPKD-ISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPDISLQTD 280 (418)
T ss_pred -CCccEEEEeccChhh-cCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 442 4443 34544 378999999995 49999999999865 556665 578999999999999996669999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+|+ |||.+++.++++++++++++.++++.|. +| ||++......+++
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~ 331 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPV 331 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCH
Confidence 99999 9999999999999999999999987665 45 8876322344554
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=201.82 Aligned_cols=198 Identities=15% Similarity=0.222 Sum_probs=151.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C---------Cc--HHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D---------GG--SGHF 169 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~---------~~--~~~~ 169 (351)
.++++.+++|||++|+||.++..++.. .+++++++++++.+.+.|+++|+|+|.+...+. | +. ..++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 678899999999999999998866543 356789999999999999999999986632121 0 00 2579
Q ss_pred HHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC--eeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD--VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 170 ~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~--~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
.++++.+.+....+++....|.. .+++.++.|++ |+- .+.+++||.++ ..+.++ +.+++++.+++++.+++..+
T Consensus 219 ~~Ll~~l~~~~~~~r~~~~~p~~-~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~~~ 295 (440)
T PRK14862 219 TDLCEALGELGAWVRLHYVYPYP-HVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREICP 295 (440)
T ss_pred HHHHHHHHhcCCEEEEecCCCCc-CCHHHHHHHhc-CCCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHHCC
Confidence 99999998862212333334444 47899999999 654 67789999855 566666 57899999999999999777
Q ss_pred CCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHH
Q 018731 247 GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKF 304 (351)
Q Consensus 247 Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~ 304 (351)
|+.+.+++|+|+ |||.+++.++++++++++++.++++.|. +| |+.+. ....+++++.
T Consensus 296 ~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~-~~~~v~~~~~ 355 (440)
T PRK14862 296 DLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATAND-LPDQVPEEVK 355 (440)
T ss_pred CceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhh-CCCCCCHHHH
Confidence 999999999999 9999999999999999999999986554 34 77641 1245666543
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=202.55 Aligned_cols=195 Identities=15% Similarity=0.220 Sum_probs=152.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-CC-cHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DG-GSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~~-~~~~~~~li~~ik~~ 179 (351)
+.+++.+++|||++|+||.++..++..+ .+++++.++++.+.+.|+++|+|+|.+...+. +. ....+.++++.+.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 6788999999999999999998665433 55689999999998999999999998743331 10 013577888888763
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..|+. ++++.++.|+++| +.++.+++||+++ +.+.++ ++++.++++++++.+++..+|+.+.++
T Consensus 227 -~~~~~ir~~~~~P~~-i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 227 -DGLERIRFMTSHPKD-LSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred -CCCcEEEEecCChhh-cCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 343 3443 33544 4899999999996 9999999999866 555565 578999999999999996679999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+|+ |||.+++.++++++++++++.++++.|. +| |+++.. ...+++
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~-~~~v~~ 353 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKM-EDQVPE 353 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhC-CCCCCH
Confidence 99999 9999999999999999999998886554 55 887632 234444
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=200.88 Aligned_cols=210 Identities=16% Similarity=0.258 Sum_probs=156.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC--CCCC---CCchhHHHHHHHHHh------CCCcEEEEeccCCCCCCCCcHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAP---PDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFAR 171 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~--~~~~---~~~eei~~~~~~~~~------~G~~~I~ltgg~~~~l~~~~~~~~~~ 171 (351)
..++.+..++|+.+|.||+++... +... .+.+.+.++++.+.. .++..|+|+||+|..++ .+++.+
T Consensus 163 ~~sLYihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 163 EVSIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred ceEEEEecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 456667789999999999998742 1111 123444444443321 25678999999987665 588999
Q ss_pred HHHHHHHhCCC------cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 172 TVKAMKKQKPD------IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 172 li~~ik~~~p~------i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
+++.+++.+|+ +++++..|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.+++++++++++.+++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~-it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~- 316 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDT-ITEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLARE- 316 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 99999887642 2344435655 49999999999999999999999876 555664 57999999999999999
Q ss_pred CCCC-eEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc--CCCCHHHH----HHHHHHHHhc
Q 018731 245 KKGL-ITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK--EYVTPEKF----DFWKAYGESI 314 (351)
Q Consensus 245 ~~Gi-~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~--~~v~~~e~----~~~~~~~~~~ 314 (351)
.|+ .+++++|+|+ |||.+++.++++++.++++++++++.+. .| |+++.... ...+.++. +...+.++.+
T Consensus 317 -~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~ 395 (488)
T PRK08207 317 -MGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKEL 395 (488)
T ss_pred -CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHc
Confidence 999 7999999999 9999999999999999999999996443 34 77763221 22334333 3345566778
Q ss_pred Cccee
Q 018731 315 GFRYV 319 (351)
Q Consensus 315 G~~~~ 319 (351)
||..|
T Consensus 396 Gy~~Y 400 (488)
T PRK08207 396 GYVPY 400 (488)
T ss_pred CCHhh
Confidence 99887
|
|
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=199.40 Aligned_cols=195 Identities=14% Similarity=0.191 Sum_probs=152.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CcHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-----GGSGHFARTVKAM 176 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-----~~~~~~~~li~~i 176 (351)
+.+++.+++|||++|+||.++..++. ...++++++++++.+.+.|+++|+|+|.+...+.. .....+.++++.+
T Consensus 127 ~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l 206 (420)
T PRK14339 127 YKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKL 206 (420)
T ss_pred eEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHH
Confidence 68999999999999999999987654 33567899999999999999999999977433311 0113578888888
Q ss_pred HHhCCCc-EEEE--eecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 177 KKQKPDI-MVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 177 k~~~p~i-~i~~--~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
.+. +++ ++.. ..|.. .+++.++.|+++ |+..+.+++||+++ +.+.++ ++++.++.+++++.+++..+|+.+
T Consensus 207 ~~~-~g~~~ir~~s~~p~~-~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~i~i 283 (420)
T PRK14339 207 SEI-EGLERIRFTSPHPLH-MDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPEVSI 283 (420)
T ss_pred hcC-CCccEEEECCCChhh-cCHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCCCEE
Confidence 763 343 3433 23333 589999999998 58999999999865 555565 578999999999999996679999
Q ss_pred EEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 251 ~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
.+++|+|+ |||++++.++++++.+++++.++++.|. +| ||.+.. ...+++
T Consensus 284 ~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~-~~~v~~ 336 (420)
T PRK14339 284 STDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAW-KNQVDE 336 (420)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhC-CCCCCH
Confidence 99999999 9999999999999999999988887665 45 887621 234544
|
|
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=201.26 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=150.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC-cHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~-~~~~~~~li~~ik~~~ 180 (351)
..+++.+++|||++|+||.++..++.. ..+++++.++++.+.+.|+++|+|+|.+...+... ....+.++++.+.+.
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~- 224 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEI- 224 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcC-
Confidence 578889999999999999998766543 35678999999999999999999998775433210 013577888888764
Q ss_pred CC---cEEEEeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 181 PD---IMVECLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 181 p~---i~i~~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
++ +.+....|.. ++++.++.|+++ |+..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.+++
T Consensus 225 ~g~~~i~~~~~~p~~-l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~gi~i~~d~ 302 (437)
T PRK14331 225 DGVERIRFTTGHPRD-LDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIPDITFSTDI 302 (437)
T ss_pred CCccEEEEeccCccc-CCHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCCCCEEecCE
Confidence 33 3343333443 589999999998 59999999999866 556665 5789999999999999955699999999
Q ss_pred eeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 255 IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
|+|+ |||++++.++++++++++++.++++.|. .| |+++.
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~ 344 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAY 344 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhh
Confidence 9999 9999999999999999999998886554 45 88863
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-23 Score=193.59 Aligned_cols=202 Identities=14% Similarity=0.201 Sum_probs=155.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC---CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-------------CCcH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA---PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGS 166 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~---~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-------------~~~~ 166 (351)
...++++||+|+.+|.||+++..++.. .++++++.+.++.+.+.|+++++++||..++.. +...
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 467788999999999999998865432 467899999999999999999999988865442 0013
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc---CCCCCHHHHHHHHHHHH
Q 018731 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR---DPRAGYEQSLEVLKHAK 242 (351)
Q Consensus 167 ~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r---~~~~~~~~~l~~i~~~~ 242 (351)
+++.++++.+++.. ++... .+++. ++++.++.|+++|++ +.+++||.++ +.+.++ .|+.++++++++++.++
T Consensus 84 ~~~~~~~~~i~~e~-~~~~~-~~~g~-lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 84 EYLRELCELALEET-GLLPH-TNPGV-MSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHHHhc-CCccc-cCCCC-CCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 67888888888652 33222 23443 599999999999987 5889999865 332222 24557889999999999
Q ss_pred HhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-----CCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 243 LSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 243 ~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-----~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
+ .|+.+++++|+|+|||.+|+.+++.++++++ ++.+.+.+| +| ||++ ....+++.++.++.+.++.
T Consensus 160 ~--~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P~~gTpl~--~~~~~s~~e~lr~iAv~Rl 233 (322)
T TIGR03550 160 R--LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RAKPGTPME--NHPEPSLEEMLRTVAVARL 233 (322)
T ss_pred H--cCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-ccCCCCCcc--CCCCCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999998 555554445 45 8875 2456788888887777765
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=194.64 Aligned_cols=219 Identities=12% Similarity=0.201 Sum_probs=160.7
Q ss_pred EEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHH-HHhCC---CcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 106 IMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKA-IASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 106 ~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~-~~~~G---~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
+.+.-++|+.+|.||.+.+...... .+.+.+.++++. +...| ++.|+|+||+|..++ .+++.++++.|++
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~ 79 (360)
T TIGR00539 3 LYIHIPFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQ 79 (360)
T ss_pred EEEEeCCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHH
Confidence 3445789999999999976521111 123333333332 23334 789999999987665 4788888888876
Q ss_pred hC---CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEe
Q 018731 179 QK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSS 253 (351)
Q Consensus 179 ~~---p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~ 253 (351)
.+ ++..+.+.++...++++.++.|+++|+++|++|+||+++ ..+.+. +.+++++++++++.+++ .|+. ++.+
T Consensus 80 ~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~--~G~~~v~~d 156 (360)
T TIGR00539 80 HASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALK--SGIENISLD 156 (360)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCeEEEe
Confidence 54 233444333333359999999999999999999999875 566664 67999999999999999 9995 8999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHHH----HHHHHHHhcCcceeccCcccc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKFD----FWKAYGESIGFRYVASGPLVR 326 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~~----~~~~~~~~~G~~~~~~~~~~r 326 (351)
+|+|+ |||.+++.++++++.++++++++++.+. .| |+++.......+.++.. ...+.+...||.+++..++++
T Consensus 157 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~ 236 (360)
T TIGR00539 157 LMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAK 236 (360)
T ss_pred ccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcC
Confidence 99999 9999999999999999999999996443 34 77763322333433322 344567778999999999988
Q ss_pred cccc
Q 018731 327 SSYR 330 (351)
Q Consensus 327 ~~~~ 330 (351)
.++.
T Consensus 237 ~~~~ 240 (360)
T TIGR00539 237 AGYQ 240 (360)
T ss_pred CCHH
Confidence 7654
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=210.38 Aligned_cols=247 Identities=18% Similarity=0.205 Sum_probs=189.3
Q ss_pred HhhhccCCcch--HHHHHHh--cCCCHHHHHHHccCCCccccccCC---CCceee--EEEEeeccCCCCCCcCcccCCCC
Q 018731 56 LRQKAPQGQRF--QEVKESL--SSLKLNTVCEEAQCPNIGECWNGG---GDGIAT--ATIMLLGDTCTRGCRFCAVKTSR 126 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll--~~~~l~~l~~~A~~p~i~~~~~~~---~~~~~~--~~~i~~s~gC~~~C~FC~~~~~~ 126 (351)
+.+++.+|+.+ .|+..|+ +..++..|+..|+ .+++.++|+ .+.+.+ ..++++|+.|..+|.||+|....
T Consensus 17 ~l~k~~~g~~ls~eEa~~Ll~~~~~dl~~L~~~A~--~vR~~~~G~~~~~~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~ 94 (843)
T PRK09234 17 ALRRARDGVTLDVDEAAVLLTARGDDLADLCASAA--RVRDAGLGAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVP 94 (843)
T ss_pred HHHHHHcCCCCCHHHHHHHhcCCCccHHHHHHHHH--HHHHHHcCCcccCceEEEEeEEEecCCCCCCCCCCcCCCccCC
Confidence 34566777666 4577777 3568999999999 999988763 002322 35677899999999999998744
Q ss_pred CC---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-------------CCcHHHHHHHHHHHHHhCCCcEEEEeec
Q 018731 127 NP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGSGHFARTVKAMKKQKPDIMVECLTS 190 (351)
Q Consensus 127 ~~---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-------------~~~~~~~~~li~~ik~~~p~i~i~~~~~ 190 (351)
+. ..++++|+.+.+++..+.|++++.|+||+.++.. +...+++.++++.|++.. ++..++ +.
T Consensus 95 ~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~-gl~p~i-~~ 172 (843)
T PRK09234 95 GKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEET-GLLPHL-NP 172 (843)
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhc-CCCcee-ee
Confidence 32 2367899999999999999999999999876542 112589999999999753 332222 22
Q ss_pred CCCCCHHHHHHHHHcCCCeeecchhchH-HHHh------hhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHH
Q 018731 191 DFRGDLRAVETLVHSGLDVFAHNIETVK-RLQR------IVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDD 263 (351)
Q Consensus 191 ~~~~~~e~l~~L~~aG~~~i~~~ies~~-~~~~------~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e 263 (351)
+.++.+.++.|+++|++ +.+++||.. +++. ... |++.+++++++++.+++ .||.+++++|+|+|||.+
T Consensus 173 -G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~-P~K~~~~RL~ti~~A~~--lGi~~tsG~L~GiGEt~e 247 (843)
T PRK09234 173 -GVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGS-PDKDPAVRLRVLEDAGR--LSVPFTTGILIGIGETLA 247 (843)
T ss_pred -CCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHH--cCCCccceEEEECCCCHH
Confidence 34689999999999997 679999954 4542 222 56789999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhC-----CCCEEeeeccc-CC-CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 264 DLKEAMADLRSI-----DVDILTLGQYL-QP-TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 264 ~~~~~l~~l~~l-----g~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
|+.+++..|+++ +++.+.+.+|. .| ||+. .....+++++.+..++++.
T Consensus 248 dRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~--~~~~~s~~e~Lr~iAvaRl 302 (843)
T PRK09234 248 ERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMA--GVPDAGLEELLATIAVARL 302 (843)
T ss_pred HHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCC--CCCCCCHHHHHHHHHHHHH
Confidence 999999999999 46667775555 22 8875 3456888999888888776
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=200.20 Aligned_cols=197 Identities=15% Similarity=0.239 Sum_probs=153.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC----CcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD----GGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~----~~~~~~~~li~~ik 177 (351)
+.+++.+++|||++|+||.++..++.. .++++++.++++.+.+.|+++|+|+|.+...+.. +....+.++++.+.
T Consensus 152 ~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~ 231 (455)
T PRK14335 152 FQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIV 231 (455)
T ss_pred ceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHH
Confidence 678899999999999999999866543 3567899999999999999999999987543321 11125788888875
Q ss_pred Hh---CCCc-EEEE--eecCCCCCHHHHHHHHH--cCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 018731 178 KQ---KPDI-MVEC--LTSDFRGDLRAVETLVH--SGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (351)
Q Consensus 178 ~~---~p~i-~i~~--~~~~~~~~~e~l~~L~~--aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi 248 (351)
+. .+++ ++.. ..|+. ++++.++.|++ +|+..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+
T Consensus 232 ~~~~~~~~i~~ir~~s~~p~~-i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pgi 309 (455)
T PRK14335 232 RRAEVTDQIRWIRFMSSHPKD-LSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPNV 309 (455)
T ss_pred HhhcccCCceEEEEeecCccc-CCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCC
Confidence 32 1233 3332 23443 48999999998 489999999999765 555665 5789999999999999966699
Q ss_pred eEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 249 ITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 249 ~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
.+.+++|+|+ |||.+++.++++++++++++.++++.|. +| ||++. ....++++
T Consensus 310 ~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~-~~~~v~~~ 365 (455)
T PRK14335 310 ALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYD-FPDRIPDE 365 (455)
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhh-CCCCCCHH
Confidence 9999999999 9999999999999999999999997555 45 88873 22345553
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=197.25 Aligned_cols=221 Identities=10% Similarity=0.168 Sum_probs=166.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC-CC-C--------CCCchhHHHHHHHHHh--CCCcEEEEeccCCCCCCCCcHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR-NP-A--------PPDPMEPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFA 170 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~-~~-~--------~~~~eei~~~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~~ 170 (351)
..++.+.-++|+.+|.||.++... +. . ..+.+.+.++++.... .+++.|+|.||+|..++ .+++.
T Consensus 10 ~~~lYiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~---~~~l~ 86 (400)
T PRK07379 10 PTSAYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLS---VEQLE 86 (400)
T ss_pred ccEEEEEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHH
Confidence 345666789999999999997531 11 0 1123445555544322 35789999999987665 58899
Q ss_pred HHHHHHHHhCC-----CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 171 RTVKAMKKQKP-----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 171 ~li~~ik~~~p-----~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
++++.|++.++ ++++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.++.++.+++++.+++
T Consensus 87 ~ll~~i~~~~~~~~~~eit~E~-~P~~-lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~- 162 (400)
T PRK07379 87 RILTTLDQRFGIAPDAEISLEI-DPGT-FDLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQ- 162 (400)
T ss_pred HHHHHHHHhCCCCCCCEEEEEe-CCCc-CCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHH-
Confidence 99999988642 234444 3444 48999999999999999999999876 455554 58999999999999999
Q ss_pred CCCCe-EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHHH----HHHHHHHHH
Q 018731 245 KKGLI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPEK----FDFWKAYGE 312 (351)
Q Consensus 245 ~~Gi~-v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~e----~~~~~~~~~ 312 (351)
.|+. ++.++|+|+ |||.+++.++++++.++++++++++.+. .| |+++.... ...+.++ +....+.+.
T Consensus 163 -~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 241 (400)
T PRK07379 163 -AGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILT 241 (400)
T ss_pred -cCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9998 999999999 9999999999999999999999997443 45 87763221 1233333 334566778
Q ss_pred hcCcceeccCccccccccc
Q 018731 313 SIGFRYVASGPLVRSSYRA 331 (351)
Q Consensus 313 ~~G~~~~~~~~~~r~~~~a 331 (351)
+.||.+|+..+|++.++.+
T Consensus 242 ~~Gy~~yeisnfa~~g~~~ 260 (400)
T PRK07379 242 QAGYEHYEISNYAKPGYQC 260 (400)
T ss_pred HcCCceeeeeheECCChHH
Confidence 8899999999999876554
|
|
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=198.82 Aligned_cols=196 Identities=15% Similarity=0.230 Sum_probs=153.8
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC----CcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD----GGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~----~~~~~~~~li~~ik 177 (351)
..+++.+++|||++|+||.++..++. ...+++++.++++.+.+.|+++|+|+|.+...+.. ....++.++++.+.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 56778889999999999999876543 34567999999999999999999999876433311 11247888998887
Q ss_pred HhCCC---cEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 178 KQKPD---IMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 178 ~~~p~---i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+. ++ +++.+..|.. ++++.++.|+++| +..+.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.
T Consensus 227 ~~-~~~~~ir~~~~~p~~-~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 227 AI-DGIERIRYTTSHPRD-FTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred hc-CCccEEEEccCCccc-CCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 64 34 3333333443 4899999999986 8999999999876 555565 5789999999999999855699999
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+++|+|+ |||.+++.++++++++++++.++++.|. .| |+++.. ...++++
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~-~~~v~~~ 356 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADL-PDDVPEE 356 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhC-CCCCCHH
Confidence 9999999 9999999999999999999999886554 45 888732 2345553
|
|
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=197.60 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=153.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC--CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--~~~~~~~~li~~ik~~ 179 (351)
.++++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|+++|+|+|.+...+.. .+.+++.++++.+.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 5678999999999999999987654433 567899999999999999999998765332210 0125789999999875
Q ss_pred CCCc-E--EEEeecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-M--VECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~--i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ + +....|+. ++++.++.|+++| +..+.+++||+++ ..+.++ ++++.++.+++++.+++..+|+.+.++
T Consensus 215 -~~i~~~r~~~~~p~~-~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 215 -GGIYWIRMHYLYPDE-LTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred -CCccEEEEccCCccc-CCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 222 2 22223443 4899999999996 8899999999865 566665 578999999999999995558889999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKF 304 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~ 304 (351)
+|+|+ |||.+++.++++++++++++.++++.|. .| |+++.. ...+++++.
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~-~~~i~~~~~ 344 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFAL-PDQVPEEVK 344 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccC-CCCCCHHHH
Confidence 99999 9999999999999999999999997555 44 877632 234555443
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=195.64 Aligned_cols=219 Identities=14% Similarity=0.204 Sum_probs=164.3
Q ss_pred EEEeeccCCCCCCcCcccCCCC-CC------CCCCchhHHHHHHHHHh------CCCcEEEEeccCCCCCCCCcHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSR-NP------APPDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFAR 171 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~-~~------~~~~~eei~~~~~~~~~------~G~~~I~ltgg~~~~l~~~~~~~~~~ 171 (351)
++.+.-++|+.+|.||.++... .. ...+.+.+.++++...+ ..++.|+|.||+|..++ .+.+.+
T Consensus 4 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ 80 (375)
T PRK05628 4 GVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLAR 80 (375)
T ss_pred EEEEEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHH
Confidence 4455678999999999997632 11 11234566666665432 23778999999987666 478889
Q ss_pred HHHHHHHhC---CCcEEEEe-ecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 172 TVKAMKKQK---PDIMVECL-TSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 172 li~~ik~~~---p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
+++.+++.+ ++..+.+. .|+. ++++.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .
T Consensus 81 ll~~i~~~~~~~~~~e~t~e~~p~~-i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~--~ 156 (375)
T PRK05628 81 VLDAVRDTFGLAPGAEVTTEANPES-TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARA--A 156 (375)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCC-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--c
Confidence 999888754 33344332 3444 59999999999999999999999876 556665 57999999999999999 9
Q ss_pred CCe-EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhc
Q 018731 247 GLI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESI 314 (351)
Q Consensus 247 Gi~-v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~ 314 (351)
|+. ++.++|+|+ |||.+++.++++++.+++++++.++.+. .| |+++.... ..++.+ .+....+.++..
T Consensus 157 g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 236 (375)
T PRK05628 157 GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAA 236 (375)
T ss_pred CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHc
Confidence 998 999999999 9999999999999999999999987544 44 87763211 112222 333456677788
Q ss_pred CcceeccCcccccccc
Q 018731 315 GFRYVASGPLVRSSYR 330 (351)
Q Consensus 315 G~~~~~~~~~~r~~~~ 330 (351)
||.+++..+|++.++.
T Consensus 237 G~~~ye~s~fa~~~~~ 252 (375)
T PRK05628 237 GFDWYEVSNWARPGGE 252 (375)
T ss_pred CCCeeeeccccCCCcc
Confidence 9999999999886544
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=197.11 Aligned_cols=216 Identities=15% Similarity=0.224 Sum_probs=162.5
Q ss_pred eeccCCCCCCcCcccCCC--CCC-CCCCchhHHHHHHHHHhC---CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 108 LLGDTCTRGCRFCAVKTS--RNP-APPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~--~~~-~~~~~eei~~~~~~~~~~---G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
+.-++|+.+|.||.++.. .+. ...+++.+.++++.+... +++.|+|+||+|..++ .+++.++++.+++.++
T Consensus 6 ihiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~~~~~ 82 (377)
T PRK08599 6 IHIPFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIHRNLP 82 (377)
T ss_pred EEeCCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHHHhCC
Confidence 345679999999998753 211 223556677777655444 5778999999986555 4789999999988642
Q ss_pred ---CcEEEEe-ecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeee
Q 018731 182 ---DIMVECL-TSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIM 255 (351)
Q Consensus 182 ---~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~I 255 (351)
...+.+. .|+. ++++.++.|+++|++++++|+||+++ ..+.++ +.++.+++.++++.+++ .|+. ++.++|
T Consensus 83 ~~~~~eit~e~~p~~-l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~--~g~~~v~~dli 158 (377)
T PRK08599 83 LSGLEEFTFEANPGD-LTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKK--AGFDNISIDLI 158 (377)
T ss_pred CCCCCEEEEEeCCCC-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEEEeee
Confidence 2234433 3443 58999999999999999999999875 566665 58999999999999999 9997 899999
Q ss_pred eeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc-C---CCCH----HHHHHHHHHHHhcCcceeccCcc
Q 018731 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK-E---YVTP----EKFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~-~---~v~~----~e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
+|+ |||.+++.++++++.++++++++++.+. .| |++..... . ..+. +.+....+.+...||.+++..+|
T Consensus 159 ~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~f 238 (377)
T PRK08599 159 YALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNF 238 (377)
T ss_pred cCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeee
Confidence 999 9999999999999999999999986443 45 77753211 1 1122 23444566777789999999999
Q ss_pred cccccc
Q 018731 325 VRSSYR 330 (351)
Q Consensus 325 ~r~~~~ 330 (351)
++.++.
T Consensus 239 a~~~~~ 244 (377)
T PRK08599 239 AKPGFE 244 (377)
T ss_pred eCCChH
Confidence 887654
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=193.75 Aligned_cols=221 Identities=12% Similarity=0.188 Sum_probs=161.5
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHHHH-hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~~~-~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
++.+.-++|+.+|.||.++...+... .+.+.+.++++.+. ..+++.|+|+||+|..++ .+.+..+++.+++..
T Consensus 5 ~lYiHiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 5 SLYIHIPFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKLN 81 (374)
T ss_pred EEEEEeCCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhCC
Confidence 45566889999999999987533221 12344555554332 235788999999986555 366667777776531
Q ss_pred --CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeee
Q 018731 181 --PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIML 256 (351)
Q Consensus 181 --p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~Iv 256 (351)
+++.+.+.++...++++.++.|+++|+++|++|+||+++ ..+.+. +.++.++.+++++.+++ .|+. +++++|+
T Consensus 82 ~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~--~g~~~v~~dli~ 158 (374)
T PRK05799 82 KKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARK--LGFNNINVDLMF 158 (374)
T ss_pred CCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEEEEeec
Confidence 234444433323359999999999999999999999876 455554 57899999999999999 9996 9999999
Q ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHHH----HHHHHHHHHhcCcceeccCccc
Q 018731 257 GL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPEK----FDFWKAYGESIGFRYVASGPLV 325 (351)
Q Consensus 257 Gl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~e----~~~~~~~~~~~G~~~~~~~~~~ 325 (351)
|+ |||.+++.++++++.++++++++++.+. .| |+++.... ...+.++ +....+.+.+.||.+++.++|+
T Consensus 159 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa 238 (374)
T PRK05799 159 GLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFA 238 (374)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeE
Confidence 99 9999999999999999999999997543 45 87753211 1223332 3345567778899999999999
Q ss_pred cccccc
Q 018731 326 RSSYRA 331 (351)
Q Consensus 326 r~~~~a 331 (351)
+.++.+
T Consensus 239 ~~~~~~ 244 (374)
T PRK05799 239 KPGKEC 244 (374)
T ss_pred CCCcch
Confidence 876543
|
|
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=198.84 Aligned_cols=196 Identities=13% Similarity=0.262 Sum_probs=153.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C--CcHHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D--GGSGHFARTVKAMKK 178 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~--~~~~~~~~li~~ik~ 178 (351)
..+++.+++|||++|+||.++..++..+ .++++++++++.+.+.|+++|+|+|.+...+. + .+...+.++++.|.+
T Consensus 148 ~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~ 227 (446)
T PRK14337 148 ASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA 227 (446)
T ss_pred cEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh
Confidence 6789999999999999999988665433 56789999999999999999999987643331 1 011367888888876
Q ss_pred hCCCc-EEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 179 QKPDI-MVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 179 ~~p~i-~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
. +++ ++. ...|.. ++++.++.|+++ |+.++.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.+
T Consensus 228 ~-~g~~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~i~i~~ 304 (446)
T PRK14337 228 L-PGLERLRFTTPHPKD-IAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPDIALTT 304 (446)
T ss_pred c-CCCcEEEEccCCccc-CCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 4 343 344 334544 479999999984 69999999999865 556665 57899999999999999667899999
Q ss_pred eeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 253 ~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
++|+|+ |||.+++.++++++.+++++.++++.|. +| |+.+.. ...++++
T Consensus 305 d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~-~~~v~~~ 356 (446)
T PRK14337 305 DLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEML-PGKVPEE 356 (446)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccC-CCCCCHH
Confidence 999999 9999999999999999999999986565 56 887632 2345543
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=197.20 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=151.5
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
..+++.+++|||++|+||.++..++..+ +++++++++++.+.+.|+++|+|+|.+-+.+. + .+...+.++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 6788899999999999999988665433 55689999999999999999999987643321 0 0124577888777654
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ .+.. ..|.. ++++.++.|+++| +.++.+++||+++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 220 -~~~~~~~~~~~~p~~-~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 220 -EGIERIWFLTSYPTD-FSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred -CCceEEEEecCChhh-cCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 333 2222 22333 4889999999998 7899999999865 555665 578999999999999996679999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCH
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP 301 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~ 301 (351)
+|+|+ |||.+++.++++++.+++++.++++.|. +| |+++....+.++.
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~ 347 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPY 347 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCH
Confidence 99999 9999999999999999999999987554 45 8886322334544
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=199.43 Aligned_cols=217 Identities=16% Similarity=0.260 Sum_probs=165.2
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHh------CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~------~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++.+.-++|+.+|.||.+...... ...+.+.+.++++...+ ..++.|+|.||+|+.++ .+.+.++++
T Consensus 62 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll~ 138 (449)
T PRK09058 62 RLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLIT 138 (449)
T ss_pred eEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHHH
Confidence 4556668999999999998753211 12345666666665443 24778999999998776 588999999
Q ss_pred HHHHhCC-----CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC-
Q 018731 175 AMKKQKP-----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG- 247 (351)
Q Consensus 175 ~ik~~~p-----~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~G- 247 (351)
.+++.+| ++++++ .|+. .+++.++.|+++|+++|++|+||+++ ..+.++ +.++.++++++++.+++ .|
T Consensus 139 ~i~~~~~l~~~~eitiE~-~p~~-~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~--~g~ 213 (449)
T PRK09058 139 ALREYLPLAPDCEITLEG-RING-FDDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVA--RDR 213 (449)
T ss_pred HHHHhCCCCCCCEEEEEe-CcCc-CCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh--CCC
Confidence 9988754 244554 3443 48999999999999999999999876 455554 58999999999999999 89
Q ss_pred CeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc-C---CC-CHHH----HHHHHHHHHhcC
Q 018731 248 LITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK-E---YV-TPEK----FDFWKAYGESIG 315 (351)
Q Consensus 248 i~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~-~---~v-~~~e----~~~~~~~~~~~G 315 (351)
..+++++|+|+ |||.+++.++++++.+++++++.++.+. .| |+++.... . .. +.++ +....+.+.+.|
T Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~G 293 (449)
T PRK09058 214 AAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAG 293 (449)
T ss_pred CcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 56999999999 9999999999999999999999997543 45 77753221 1 11 3332 334556677789
Q ss_pred cceeccCcccccc
Q 018731 316 FRYVASGPLVRSS 328 (351)
Q Consensus 316 ~~~~~~~~~~r~~ 328 (351)
|.+++..+|++..
T Consensus 294 y~~yeis~far~~ 306 (449)
T PRK09058 294 WRQLSNSHWARTT 306 (449)
T ss_pred CeEEeeeeeecCC
Confidence 9999999998865
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=197.62 Aligned_cols=196 Identities=16% Similarity=0.244 Sum_probs=154.1
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC----CcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD----GGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~----~~~~~~~~li~~ik 177 (351)
..+++.+++||+++|+||.++..++..+ ++++++.++++.+.+.|+++|+|+|.+...+.. .+...+.++++.+.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 6788999999999999999988665433 566899999999999999999999876543311 11236888888887
Q ss_pred HhCCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 178 KQKPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 178 ~~~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+. +++ ++.. ..|.. ++++.++.|+++| +..+.+++||+++ +.+.++ ++++.++++++++.+++..+|+.+.
T Consensus 225 ~~-~~~~~ir~~~~~p~~-l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~i~i~ 301 (438)
T TIGR01574 225 TI-DGIERIRFTSSHPLD-FDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPNVSIS 301 (438)
T ss_pred hc-CCceEEEEecCCccc-CCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 63 343 3332 23433 5899999999999 9999999999865 555565 5789999999999999866699999
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE 302 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~ 302 (351)
+++|+|+ |||++++.++++++++++++.++++.|. +| |+++.. ...++++
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~-~~~v~~~ 354 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADM-PDQIPEE 354 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhC-CCCCCHH
Confidence 9999999 9999999999999999999999987665 55 888732 2334443
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=196.14 Aligned_cols=188 Identities=15% Similarity=0.230 Sum_probs=150.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC--CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--~~~~~~~~li~~ik~~ 179 (351)
...++.+++|||++|+||.++..++.. .++++++.++++.+.+.|+++|+|+|.+...+.. .+...+.++++.+.+.
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 678889999999999999998866543 3567999999999999999999999865322210 0125688999999875
Q ss_pred CCCc-EEE--EeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~--~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++. ...|.. ++++.++.|+++ |+..+.+++||+++ ..+.++ ++++.++++++++.+++..+|+.+.++
T Consensus 235 -~gi~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pgi~i~~d 311 (459)
T PRK14338 235 -PGLERLRFLTSHPAW-MTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVARYRELIARIREAIPDVSLTTD 311 (459)
T ss_pred -CCcceEEEEecChhh-cCHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 343 343 333443 589999999995 58999999999865 566665 578999999999999996669999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
+|+|+ |||.+++.++++++.+++++.++++.|. .| |+++.
T Consensus 312 ~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~ 354 (459)
T PRK14338 312 IIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAE 354 (459)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhh
Confidence 99999 9999999999999999999999886665 45 88763
|
|
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=196.58 Aligned_cols=199 Identities=16% Similarity=0.248 Sum_probs=151.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
..+++.+++||+++|+||.++..++. ...+++++.++++.+.+.|+++|+|+|.+...+. + .....+.++++.+.+.
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~ 217 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS 217 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc
Confidence 67889999999999999999886543 3456799999999999999999999985532121 0 0113577788777654
Q ss_pred C-CCcEEEEeecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee
Q 018731 180 K-PDIMVECLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (351)
Q Consensus 180 ~-p~i~i~~~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I 255 (351)
. +.+++....|.. ++++.++.|+++ |+.++.+++||+++ ..+.++ ++++.++++++++.+++..+++.+++++|
T Consensus 218 ~i~~ir~~~~~p~~-i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~i~i~~d~I 295 (440)
T PRK14334 218 GIPRVKFTTSHPMN-FTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPDVVLSTDII 295 (440)
T ss_pred CCcEEEEccCCccc-CCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Confidence 2 123443333433 489999999995 59999999999866 555554 57899999999999999555667899999
Q ss_pred eeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHHH
Q 018731 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEKF 304 (351)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e~ 304 (351)
+|+ |||.+++.++++++.+++++.++++.|. +| |+.+.. ...+++++.
T Consensus 296 vG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~-~~~v~~~~~ 346 (440)
T PRK14334 296 VGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKH-FQDLPREVK 346 (440)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhc-cCCCCHHHH
Confidence 999 9999999999999999999999987665 45 877632 234555443
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=195.43 Aligned_cols=187 Identities=19% Similarity=0.318 Sum_probs=148.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-C-CcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D-GGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~-~~~~~~~~li~~ik~~ 179 (351)
..+++.+++|||++|+||.++..++..+ .++++++++++.+.+.|+++|+|+|.+...+. + .+...+.++++.+++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 5788889999999999999988665433 55789999999999999999999987643221 1 0113588899888774
Q ss_pred CCCc-EEEE--eecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 018731 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (351)
Q Consensus 180 ~p~i-~i~~--~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (351)
+++ ++.. ..+.. ++++.++.|+++| +.++.+++||+++ +.+.++ ++++.+++.++++.+++..+++.+.++
T Consensus 219 -~g~~~i~~~~~~p~~-i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 219 -DGIERIRFGSSHPDD-VTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred -CCCCEEEECCCChhh-cCHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 332 3433 23433 4899999999995 9999999999876 555565 578999999999999994445999999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
+|+|+ |||.+++.++++++.+++++.++++.|. .| |+++
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~ 337 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAA 337 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchh
Confidence 99999 9999999999999999999999996554 44 8876
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=191.62 Aligned_cols=220 Identities=13% Similarity=0.195 Sum_probs=162.4
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-C--CCCchhHHHH-HHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-A--PPDPMEPENT-AKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~--~~~~eei~~~-~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ 175 (351)
.++.+.-++|..+|.||.+...... . ..+.+.+.++ ++.... ..++.|+|+||+|..++ .+.+.++++.
T Consensus 7 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 7 LALYIHIPFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred eEEEEEeCCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 4566678999999999998764211 1 1122333332 322221 34678999999987776 5788899999
Q ss_pred HHHh-CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEE
Q 018731 176 MKKQ-KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKS 252 (351)
Q Consensus 176 ik~~-~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~ 252 (351)
|++. ..++++++ .|+. ++++.++.|+++|++++++|+||+++ ..+.+. +.++.++.+++++.+++ .|+. ++.
T Consensus 84 i~~~~~~eit~E~-~P~~-~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~--~g~~~v~~ 158 (370)
T PRK06294 84 LEAPHATEITLEA-NPEN-LSESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSE--HGFSNLSI 158 (370)
T ss_pred HHhCCCCeEEEEe-CCCC-CCHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCeEEE
Confidence 8764 22456655 3444 48999999999999999999999876 455554 58999999999999999 9995 999
Q ss_pred eeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhcCcceecc
Q 018731 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESIGFRYVAS 321 (351)
Q Consensus 253 ~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~G~~~~~~ 321 (351)
++|+|+ |||.+++.++++.+.++++++++++.+. .| |+++.... ...+++ .+....+.+...||.+++.
T Consensus 159 Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 238 (370)
T PRK06294 159 DLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYEL 238 (370)
T ss_pred EeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeee
Confidence 999999 9999999999999999999999997443 44 77753211 112332 3334556777889999999
Q ss_pred Cccccccccc
Q 018731 322 GPLVRSSYRA 331 (351)
Q Consensus 322 ~~~~r~~~~a 331 (351)
++|++.++.+
T Consensus 239 s~fa~~~~~~ 248 (370)
T PRK06294 239 ASYAKPQAQS 248 (370)
T ss_pred eeeeCCCchh
Confidence 9999876553
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=190.37 Aligned_cols=219 Identities=11% Similarity=0.113 Sum_probs=165.0
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC----C--CCCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP----A--PPDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTV 173 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~----~--~~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li 173 (351)
.++.+..++|..+|.||.++..... . ..+.+.+.++++.... ..++.|+|.||+|..++ .+.+.+++
T Consensus 20 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll 96 (394)
T PRK08898 20 LSLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLL 96 (394)
T ss_pred eEEEEEeCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHH
Confidence 3566678999999999999764211 1 1244566666654322 24779999999998776 58899999
Q ss_pred HHHHHhCCC-----cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 018731 174 KAMKKQKPD-----IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 174 ~~ik~~~p~-----i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~G 247 (351)
+.|++.+|- +++++ .|+. ++.+.++.|+++|+++|++|+||+++ ..+.+. +.++.++..++++.+++ .+
T Consensus 97 ~~i~~~~~~~~~~eit~E~-~p~~-~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~--~~ 171 (394)
T PRK08898 97 SDVRALLPLDPDAEITLEA-NPGT-FEAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAK--HF 171 (394)
T ss_pred HHHHHhCCCCCCCeEEEEE-CCCC-CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--hC
Confidence 999987642 44444 3444 48899999999999999999999876 555554 57899999999999998 67
Q ss_pred CeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHH----HHHHHHHHHHhcCcceec
Q 018731 248 LITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE----KFDFWKAYGESIGFRYVA 320 (351)
Q Consensus 248 i~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~----e~~~~~~~~~~~G~~~~~ 320 (351)
..++.++|+|+ |+|.+++.++++.+.++++++++++.+. .| |+++.......+.+ .+....+.+...||.+++
T Consensus 172 ~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye 251 (394)
T PRK08898 172 DNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYE 251 (394)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhc
Confidence 77999999999 9999999999999999999999997554 45 87763222222222 233345667778999999
Q ss_pred cCcccccccc
Q 018731 321 SGPLVRSSYR 330 (351)
Q Consensus 321 ~~~~~r~~~~ 330 (351)
..+|++.+++
T Consensus 252 ~~~fa~~~~~ 261 (394)
T PRK08898 252 VSAYAKPGRQ 261 (394)
T ss_pred cccccCCCcc
Confidence 9888876543
|
|
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=190.81 Aligned_cols=189 Identities=16% Similarity=0.275 Sum_probs=146.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC-CCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~-~~~~~~~~~li~~ik~~~ 180 (351)
..+++.+++|||++|+||.++..++..+ +++++++++++.+.+.|+++|+|+|.+...+. +.+ .++.++++.+.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 6788999999999999999998765543 45689999999999999999999987754331 111 24777777776542
Q ss_pred CC--cEEEEeecCC--CCCHHHHHHHHHcC-CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 181 PD--IMVECLTSDF--RGDLRAVETLVHSG-LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 181 p~--i~i~~~~~~~--~~~~e~l~~L~~aG-~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
.. +++....|.. ..+++.++.++..| +..+.+++||.++ ..+.++ ++++.+++.++++.+++..+|+.+.+++
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~~i~i~~~~ 290 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFPDLTLSTDI 290 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEeeE
Confidence 12 3333333432 24678888887655 6889999999866 555565 5789999999999999855699999999
Q ss_pred eeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 255 IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
|+|+ |||.+++.++++++++++++.++++.|. .| |+++.
T Consensus 291 IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~ 332 (420)
T TIGR01578 291 IVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAK 332 (420)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccC
Confidence 9999 9999999999999999999999997564 45 88874
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-22 Score=190.60 Aligned_cols=220 Identities=10% Similarity=0.122 Sum_probs=165.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC---CCCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA---PPDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~---~~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ 175 (351)
..++.+.-++|..+|.||.+.+..... ..+.+.+.++++.... ..++.|+|+||+|..++ .+.+.++++.
T Consensus 11 ~~~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~~ 87 (390)
T PRK06582 11 DLSIYIHWPFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIINK 87 (390)
T ss_pred CeEEEEEeCCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 346667799999999999997642111 1233334444443322 34789999999987776 4788889999
Q ss_pred HHHhC--C---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 176 MKKQK--P---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 176 ik~~~--p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
+++.+ + ++++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. +.++.++.+++++.+++ .+..
T Consensus 88 i~~~~~~~~~~eitiE~-nP~~-~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~--~~~~ 162 (390)
T PRK06582 88 ISNLAIIDNQTEITLET-NPTS-FETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANT--IFPR 162 (390)
T ss_pred HHHhCCCCCCCEEEEEe-CCCc-CCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHH--hCCc
Confidence 98753 2 355655 3443 58999999999999999999999876 445554 58999999999999998 7778
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhcCcce
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESIGFRY 318 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~G~~~ 318 (351)
++.++|+|+ |+|.+++.++++.+.++++++++++.+. .| |+++.... ...+.+ .+....+.++..||.+
T Consensus 163 v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 242 (390)
T PRK06582 163 VSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR 242 (390)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce
Confidence 999999999 9999999999999999999999997554 55 88763221 122322 3334566778889999
Q ss_pred eccCcccccccc
Q 018731 319 VASGPLVRSSYR 330 (351)
Q Consensus 319 ~~~~~~~r~~~~ 330 (351)
++..+|++.++.
T Consensus 243 yeis~fa~~g~~ 254 (390)
T PRK06582 243 YEISNYAKIGQE 254 (390)
T ss_pred eeceeeeCCChh
Confidence 999999887654
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=188.28 Aligned_cols=219 Identities=11% Similarity=0.101 Sum_probs=165.3
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCCCC---CCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~~~---~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
.++.+..++|..+|.||.+.+...... .+.+.+.++++.... ..++.|+|.||+|..++ .+.+.++++.|
T Consensus 5 ~~lYiHIPFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i 81 (380)
T PRK09057 5 FGLYVHWPFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAI 81 (380)
T ss_pred eEEEEEeCCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHH
Confidence 356667899999999999986432111 244555556554332 35789999999998776 57899999999
Q ss_pred HHhCC-----CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 177 KKQKP-----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 177 k~~~p-----~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
++.++ ++++++ .|+. ++.+.++.|+++|+++|++|+||+++ ..+.+. +.++.++..++++.+++ .+..+
T Consensus 82 ~~~f~~~~~~eit~E~-~P~~-i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~--~~~~v 156 (380)
T PRK09057 82 ARLWPVADDIEITLEA-NPTS-VEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLARE--IFPRV 156 (380)
T ss_pred HHhCCCCCCccEEEEE-CcCc-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--hCccE
Confidence 98753 245655 3444 48899999999999999999999876 455554 58999999999999999 78889
Q ss_pred EEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc----CCCCHH----HHHHHHHHHHhcCccee
Q 018731 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTPE----KFDFWKAYGESIGFRYV 319 (351)
Q Consensus 251 ~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~----~~v~~~----e~~~~~~~~~~~G~~~~ 319 (351)
+.++|+|+ |+|.+++.++++.+.+++++++.++.+. .| |+++.... ...+.+ .+....+.++..||.++
T Consensus 157 ~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~y 236 (380)
T PRK09057 157 SFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAY 236 (380)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 99999999 9999999999999999999999997554 45 77753211 123333 34445667778899888
Q ss_pred ccCcccccccc
Q 018731 320 ASGPLVRSSYR 330 (351)
Q Consensus 320 ~~~~~~r~~~~ 330 (351)
+.+++++.++.
T Consensus 237 e~s~~a~~g~~ 247 (380)
T PRK09057 237 EISNHARPGAE 247 (380)
T ss_pred hhHHHcCCCch
Confidence 77777765543
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=193.99 Aligned_cols=187 Identities=14% Similarity=0.235 Sum_probs=148.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC----CCC-----cHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PDG-----GSGHFART 172 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l----~~~-----~~~~~~~l 172 (351)
..+++.+++||+++|+||.++..++.. ..++++++++++.+.+.|+++|+|+|.+-..+ ... ....|.++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 467889999999999999999866543 35678999999999889999999998653322 100 01368888
Q ss_pred HHHHHHhCCCc-EEEE--eecCCCCCHHHHHHHHHc--CCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 173 VKAMKKQKPDI-MVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 173 i~~ik~~~p~i-~i~~--~~~~~~~~~e~l~~L~~a--G~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
++.+.+. +++ ++.. ..|+. ++++.++.++++ |+..+.+++||+++ +.+.++ ++++.++++++++.+++..+
T Consensus 228 l~~i~~~-~~~~rir~~~~~p~~-~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p 304 (448)
T PRK14333 228 LYYIHDV-EGIERIRFATSHPRY-FTERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMP 304 (448)
T ss_pred HHHHHhc-CCCeEEEECCCChhh-hhHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCC
Confidence 8888774 443 3433 23433 478999999986 58999999999866 555565 57899999999999999666
Q ss_pred CCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 247 GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 247 Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
|+.+.+++|+|+ |||.+++.++++++++++++.++++.|. +| ||++
T Consensus 305 ~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~ 353 (448)
T PRK14333 305 DASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAA 353 (448)
T ss_pred CcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchh
Confidence 999999999999 9999999999999999999999987665 55 8876
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=185.34 Aligned_cols=203 Identities=15% Similarity=0.202 Sum_probs=146.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC---------CcHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD---------GGSGHFART 172 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~---------~~~~~~~~l 172 (351)
...++++|++|+.+|.||+++..++. ..++++++.+.++++.+.|++++.|+||+++++.- .+...+.+.
T Consensus 12 ~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~ 91 (336)
T PRK06245 12 RNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEY 91 (336)
T ss_pred cceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHH
Confidence 34667899999999999999876543 34778999999999999999999999998754431 011334455
Q ss_pred HHHHHHhCC--CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCC
Q 018731 173 VKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 173 i~~ik~~~p--~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~G 247 (351)
++.+.+... ++.. ..++ ..++++.++.|+++|+. +.+++||.++ +.+.++ .+++++++++++++.+++ .|
T Consensus 92 i~~i~~~~~~~g~~~-~~~~-~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~--~G 166 (336)
T PRK06245 92 LYDLCELALEEGLLP-HTNA-GILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGK--LK 166 (336)
T ss_pred HHHHHHHHhhcCCCc-cccC-CCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHH--cC
Confidence 544443211 1211 1223 34689999999999865 5677898765 433221 146689999999999999 99
Q ss_pred CeEEEeeeeeCCCCHHHHHHHHHHHHhCC-----CCEEeeecccCC---CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 248 LITKSSIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 248 i~v~~~~IvGlgEt~e~~~~~l~~l~~lg-----~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
+.+++++|+|+|||.+++.+++.++++++ ++.+.++.| .| ||+. ....++++++.++.+.++.
T Consensus 167 i~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f-~P~~~T~~~--~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 167 IPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNF-SPKPGIPME--NHPEPSLEEMLRVVALARL 237 (336)
T ss_pred CceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCC-cCCCCCCcc--cCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999886 456666444 46 5653 2345677787776666554
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=189.62 Aligned_cols=215 Identities=11% Similarity=0.145 Sum_probs=158.4
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCC-C---CCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPA-P---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~-~---~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
++.+..+.|+.+|.||.+....+.. . .+.+.+.++++.+.+ ..+..|+|.||+|..++ .+++.++++.+
T Consensus 41 ~lYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll~~i 117 (430)
T PRK08208 41 SLYIHIPFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLFDSV 117 (430)
T ss_pred EEEEEeCCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHHHHH
Confidence 4444459999999999987643211 1 233455555554432 23668999999987665 47888888888
Q ss_pred HHhCC----C--cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 177 KKQKP----D--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 177 k~~~p----~--i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
++.++ + +++++ .|+. ++++.++.|+++|+++|++|+||+++ ..+.+. ++++.++.+++++.+++ .|+.
T Consensus 118 ~~~~~~~~~~~eitiE~-~P~~-lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~--~g~~ 192 (430)
T PRK08208 118 ERVLGVDLGNIPKSVET-SPAT-TTAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRA--AGFP 192 (430)
T ss_pred HHhCCCCCCCceEEEEe-CcCc-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCC
Confidence 87642 2 33444 3444 49999999999999999999999855 554443 57899999999999999 9997
Q ss_pred -EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccC--CCCHHHHHHHHHHHHhcCcceeccCc
Q 018731 250 -TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKE--YVTPEKFDFWKAYGESIGFRYVASGP 323 (351)
Q Consensus 250 -v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~--~v~~~e~~~~~~~~~~~G~~~~~~~~ 323 (351)
++.++|+|+ |+|.+++.++++++.+++++++.++.+. .| |+++..... ....+.+....+.+...||.+++.++
T Consensus 193 ~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~ 272 (430)
T PRK08208 193 ILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRM 272 (430)
T ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecc
Confidence 789999999 9999999999999999999999997543 34 877632211 11122344456677788999999988
Q ss_pred cccc
Q 018731 324 LVRS 327 (351)
Q Consensus 324 ~~r~ 327 (351)
|++.
T Consensus 273 far~ 276 (430)
T PRK08208 273 FRRN 276 (430)
T ss_pred eecC
Confidence 8873
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=187.44 Aligned_cols=220 Identities=14% Similarity=0.256 Sum_probs=162.2
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-CC---CCchhHHHHHHHHHh-----CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-AP---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~~---~~~eei~~~~~~~~~-----~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++.+..++|+.+|.||.+....+. .+ .+.+.+.++++.+.. .+++.|+|+||+|..++ .+++.++++
T Consensus 50 ~~lYiHiPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~ 126 (455)
T TIGR00538 50 LSLYVHIPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMK 126 (455)
T ss_pred eEEEEEeCCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHH
Confidence 4566678999999999999864321 11 133455555554422 37889999999986555 589999999
Q ss_pred HHHHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 018731 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (351)
Q Consensus 175 ~ik~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (351)
.+++.++ +..+.+.++...++++.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .|+.
T Consensus 127 ~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~--~G~~~ 203 (455)
T TIGR00538 127 LIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHARE--AGFTS 203 (455)
T ss_pred HHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh--cCCCc
Confidence 9998643 33344333323358999999999999999999999876 566665 56899999999999999 9996
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CCC--CCcccc--cCCCCHHHHH----HHHHHHHhcCccee
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QPT--PLHLTV--KEYVTPEKFD----FWKAYGESIGFRYV 319 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~PT--p~~~~~--~~~v~~~e~~----~~~~~~~~~G~~~~ 319 (351)
++.++|+|+ |+|.+++.++++++.+++++++.++.+. .|. +..... ....++++.. .+.+.+...||.++
T Consensus 204 v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~ 283 (455)
T TIGR00538 204 INIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFI 283 (455)
T ss_pred EEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 899999999 9999999999999999999999996442 331 111111 1123444433 34556677899999
Q ss_pred ccCccccccc
Q 018731 320 ASGPLVRSSY 329 (351)
Q Consensus 320 ~~~~~~r~~~ 329 (351)
+.++|++..+
T Consensus 284 ~~~~fa~~~~ 293 (455)
T TIGR00538 284 GMDHFAKPDD 293 (455)
T ss_pred eccceeCCCh
Confidence 9999988643
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=186.48 Aligned_cols=218 Identities=13% Similarity=0.218 Sum_probs=160.7
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-CC---CCchhHHHHHHHHHh-----CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-AP---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~~---~~~eei~~~~~~~~~-----~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++...-++|+.+|.||.+...... .. .+.+.+.++++.+.+ .++..|+|+||+|..++ .+++.++++
T Consensus 50 ~~LYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll~ 126 (453)
T PRK09249 50 LSLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLMA 126 (453)
T ss_pred eEEEEEeCCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHHH
Confidence 3444557999999999998764321 11 233445555543332 35789999999987665 478999999
Q ss_pred HHHHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-e
Q 018731 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-I 249 (351)
Q Consensus 175 ~ik~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~ 249 (351)
.+++.++ +..+.+.++...++++.++.|+++|+++|++|+||+++ ..+.++ +.++.++.+++++.+++ .|+ .
T Consensus 127 ~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~--~G~~~ 203 (453)
T PRK09249 127 LLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAARE--LGFTS 203 (453)
T ss_pred HHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCc
Confidence 9988742 33344333333359999999999999999999999876 556665 57899999999999999 999 6
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc----ccc--cCCCCHHHH----HHHHHHHHhcCcce
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH----LTV--KEYVTPEKF----DFWKAYGESIGFRY 318 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~----~~~--~~~v~~~e~----~~~~~~~~~~G~~~ 318 (351)
+++++|+|+ |+|.+++.++++++.+++++++.++.+ .++|.. ... ....+.++. ....+.+...||.+
T Consensus 204 v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 204 INIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNY-AHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred EEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccC-ccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 999999999 999999999999999999999999644 343432 111 122344443 33455677789999
Q ss_pred eccCcccccc
Q 018731 319 VASGPLVRSS 328 (351)
Q Consensus 319 ~~~~~~~r~~ 328 (351)
++.++|++..
T Consensus 283 ye~s~far~~ 292 (453)
T PRK09249 283 IGMDHFALPD 292 (453)
T ss_pred EeccceeCCC
Confidence 9999988764
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=185.88 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=160.9
Q ss_pred EEEEeeccCCCCCCcCcccCCCCC-CCC---CCchhHHHHHHHHHh-----CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRN-PAP---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~-~~~---~~~eei~~~~~~~~~-----~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
.++.+..+.|+.+|.||.+..... ... .+.+.+.++++.... .++..|+|+||+|..++ .+++.++++
T Consensus 51 ~~LYvHIPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll~ 127 (453)
T PRK13347 51 VSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLMA 127 (453)
T ss_pred eEEEEEeCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHHH
Confidence 456666888999999999876421 111 123444555543332 35778999999987665 489999999
Q ss_pred HHHHhCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 018731 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (351)
Q Consensus 175 ~ik~~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (351)
.+++.++ +..+.+.++...++++.++.|+++|++++++|+||+++ ..+.++ +.++.++..++++.+++ .|+.
T Consensus 128 ~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~--~G~~~ 204 (453)
T PRK13347 128 ALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRA--AGFES 204 (453)
T ss_pred HHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh--cCCCc
Confidence 9998642 23333322322359999999999999999999999876 566665 57899999999999999 9996
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcc----c--ccCCCCHHH----HHHHHHHHHhcCcce
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL----T--VKEYVTPEK----FDFWKAYGESIGFRY 318 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~----~--~~~~v~~~e----~~~~~~~~~~~G~~~ 318 (351)
++.++|+|+ |+|.+++.++++++.+++++++.++.+. .||... . .....++++ +....+.+...||.+
T Consensus 205 v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~-~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 205 INFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA-HVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred EEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc-cccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 999999999 9999999999999999999999996443 333321 1 111223332 333556677889999
Q ss_pred eccCccccccc
Q 018731 319 VASGPLVRSSY 329 (351)
Q Consensus 319 ~~~~~~~r~~~ 329 (351)
++..+|++...
T Consensus 284 ~~~~~far~~~ 294 (453)
T PRK13347 284 IGLDHFALPDD 294 (453)
T ss_pred EeccceeCCCc
Confidence 99999988643
|
|
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=171.32 Aligned_cols=227 Identities=20% Similarity=0.325 Sum_probs=167.9
Q ss_pred HHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCC--CC---CCCCchhHHHHHH
Q 018731 68 EVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR--NP---APPDPMEPENTAK 141 (351)
Q Consensus 68 ~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~--~~---~~~~~eei~~~~~ 141 (351)
++.++++..-++.++..| .+.++|+.. ..+...+.+.+ +.||..+|.||.+.+.. +. .-+..+++++.++
T Consensus 52 eik~iYdtPLldL~f~aa---~~HRk~Hdp-~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak 127 (380)
T KOG2900|consen 52 EIKEIYDTPLLDLTFAAA---LQHRKWHDP-TKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAK 127 (380)
T ss_pred HHHHHhcchHHHHHHHHH---HHHhhhCCc-cceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHH
Confidence 456666654444444444 466678775 56788999987 99999999999987633 11 1145688999999
Q ss_pred HHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHH
Q 018731 142 AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ 221 (351)
Q Consensus 142 ~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~ 221 (351)
.+.+.|-.++++....++ +..+ ...|..+++.|++.. ++.+++....+.++.+.+..|++||+..++||++|..+.|
T Consensus 128 ~AK~~GSTRFCmGaAWRD-~~GR-k~~fk~IlE~ikevr-~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyY 204 (380)
T KOG2900|consen 128 EAKRNGSTRFCMGAAWRD-MKGR-KSAFKRILEMIKEVR-DMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYY 204 (380)
T ss_pred HHHhcCCceeecchhhhh-hccc-hhHHHHHHHHHHHHH-cCCceeeeeeccccHHHHHHHHhccceecccCccchhhhh
Confidence 999999999999877764 3321 234555555555532 4445544455567999999999999999999999998887
Q ss_pred -hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC--CCEEeeecccCC---CCCcccc
Q 018731 222 -RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID--VDILTLGQYLQP---TPLHLTV 295 (351)
Q Consensus 222 -~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg--~d~i~i~~~l~P---Tp~~~~~ 295 (351)
+.+. ..+|++++++|+.+++ +||+++++-|+|+||.++|..-.+..|..+. ++.+++ +.|.| ||+....
T Consensus 205 skvIt--TRtYDdRL~Ti~nvr~--aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPi-N~LvaikGTP~~d~~ 279 (380)
T KOG2900|consen 205 SKVIT--TRTYDDRLQTIKNVRE--AGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPI-NRLVAIKGTPMADEK 279 (380)
T ss_pred cccce--ecchHHHHHHHHHHHH--hcceecccccccccccccceeeeeeeeccCCCCCccccc-ceEEecCCcccchhh
Confidence 6665 6799999999999999 9999999999999999999998888888876 457888 45534 8887444
Q ss_pred cCCCCHHHHHH
Q 018731 296 KEYVTPEKFDF 306 (351)
Q Consensus 296 ~~~v~~~e~~~ 306 (351)
...+.-.++.+
T Consensus 280 ~k~l~i~e~lR 290 (380)
T KOG2900|consen 280 SKKLQIDEILR 290 (380)
T ss_pred cccccHHHHHH
Confidence 45555555544
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=189.33 Aligned_cols=180 Identities=16% Similarity=0.256 Sum_probs=144.6
Q ss_pred EEEeeccCCCCCCcCcccCCCCC-CCCCCchhHHHHHHHHH-hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-C
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-P 181 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~-~~~~~~eei~~~~~~~~-~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p 181 (351)
..+..|+|||++|+||+.+...+ ....+++.+.++++.+. +.|++.+.|.+.++. +. .+++.++++++.+.. .
T Consensus 195 ~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~-~~---~~~~~~l~~~l~~~~~l 270 (497)
T TIGR02026 195 AVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPT-IN---RKKFQEFCEEIIARNPI 270 (497)
T ss_pred eeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccc-cC---HHHHHHHHHHHHhcCCC
Confidence 34678999999999999876432 23457788888888775 479999999876642 22 478999999998764 3
Q ss_pred CcEEEEeec--CCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 182 DIMVECLTS--DFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 182 ~i~i~~~~~--~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
++...+.+. +...+++.++.|+++|++++.+|+||+++ ..+.++ ++++.++..++++.+++ .||.+.+++|+|+
T Consensus 271 ~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~--~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 271 SVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQ--HNILSEAQFITGF 347 (497)
T ss_pred CeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--CCCcEEEEEEEEC
Confidence 455444432 23347899999999999999999999876 556665 57899999999999999 9999999999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCc
Q 018731 259 -GESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLH 292 (351)
Q Consensus 259 -gEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~ 292 (351)
|||.+++.++++++.+++++++.++ .+.| |+++
T Consensus 348 P~et~e~~~~t~~~~~~l~~~~~~~~-~~tP~PGT~l~ 384 (497)
T TIGR02026 348 ENETDETFEETYRQLLDWDPDQANWL-MYTPWPFTSLF 384 (497)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEE-EecCCCCcHHH
Confidence 9999999999999999999999885 5555 7664
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=187.71 Aligned_cols=177 Identities=12% Similarity=0.227 Sum_probs=141.8
Q ss_pred EEEeeccCCCCCCcCcccCCC---CCCCCCCchhHHHHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 105 TIMLLGDTCTRGCRFCAVKTS---RNPAPPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~---~~~~~~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+..++|||++|.||.++.. +.....+++.+.++++.+.+. |++.|+|.+.+. .. +.+++.++++.+++.
T Consensus 198 ~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f--~~--~~~~~~~l~~~l~~~ 273 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDTF--TD--DKPRAEEIARKLGPL 273 (472)
T ss_pred EEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCC--CC--CHHHHHHHHHHHhhc
Confidence 456679999999999997642 222346778898888887764 789999965442 12 247888999999875
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
++.+.+.+... .+++.++.|+++|++++.+|+||+++ ..+.++ ++.+.++..++++.+++ .|+.+.+++|+|+
T Consensus 274 --~i~~~~~~~~~-~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~--~Gi~v~~~~IiGl 347 (472)
T TIGR03471 274 --GVTWSCNARAN-VDYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHK--LGIKVHGTFILGL 347 (472)
T ss_pred --CceEEEEecCC-CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHH--CCCeEEEEEEEeC
Confidence 55555544332 58999999999999999999999876 455565 57899999999999999 9999999999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCc
Q 018731 259 -GESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLH 292 (351)
Q Consensus 259 -gEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~ 292 (351)
|||.+++.++++++.+++++.+.++ .+.| |+++
T Consensus 348 Pget~e~~~~ti~~~~~l~~~~~~~~-~l~P~PGT~l~ 384 (472)
T TIGR03471 348 PGETRETIRKTIDFAKELNPHTIQVS-LAAPYPGTELY 384 (472)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceeee-ecccCCCcHHH
Confidence 9999999999999999999998885 5545 6654
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=163.96 Aligned_cols=182 Identities=17% Similarity=0.328 Sum_probs=144.6
Q ss_pred EEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCC-----CcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWG-----VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G-----~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
.++.+|++|+++|.||......+. ...+++++.+.++.+.+.| ++.+.++||++...+ .+++.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHHH
Confidence 467889999999999999875422 2234577888887775544 467899999975433 2368888888888
Q ss_pred hCC---CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC-CeEEEe
Q 018731 179 QKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG-LITKSS 253 (351)
Q Consensus 179 ~~p---~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~G-i~v~~~ 253 (351)
..+ ...+...++....+++.++.|+++|++.+.+++|+.++ .++.++ ++.++++++++++.+++ .| +.+.+.
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~--~g~~~v~~~ 156 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLRE--AGPIKVSTD 156 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--hCCcceEEe
Confidence 754 34566656656679999999999999999999999866 555565 57899999999999999 89 889999
Q ss_pred eeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 254 ~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
+++|+ +++.+++.++++++.+++++.+.++.+. .| |+++
T Consensus 157 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~ 198 (216)
T smart00729 157 LIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLA 198 (216)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHH
Confidence 99999 7999999999999999999998886554 34 6665
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=181.54 Aligned_cols=220 Identities=14% Similarity=0.242 Sum_probs=166.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC----CCCCchhHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCcHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP----APPDPMEPENTAKAIASW-----GVDYIVLTSVDRDDIPDGGSGHFARTV 173 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~----~~~~~eei~~~~~~~~~~-----G~~~I~ltgg~~~~l~~~~~~~~~~li 173 (351)
..+..+-.++|...|.||.+.+.... ...+.+.+.++++..... -++.|+|.||+|..|. .+.+..++
T Consensus 34 ~~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll 110 (416)
T COG0635 34 PLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLL 110 (416)
T ss_pred ceEEEEEcccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHH
Confidence 35666679999999999999874211 112334444444443322 2678999999998776 57888888
Q ss_pred HHHHHhCC------CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCC
Q 018731 174 KAMKKQKP------DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKK 246 (351)
Q Consensus 174 ~~ik~~~p------~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~ 246 (351)
..|++.++ ++++++ .|+. .+.+.++.++++|++||++|++|+++ +.+.+. +.++.++..++++.+++ .
T Consensus 111 ~~l~~~~~~~~~~~EitiE~-nP~~-~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~--~ 185 (416)
T COG0635 111 KALRELFNDLDPDAEITIEA-NPGT-VEAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARK--A 185 (416)
T ss_pred HHHHHhcccCCCCceEEEEe-CCCC-CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--c
Confidence 88887762 356666 3433 48999999999999999999999976 555554 58999999999999999 9
Q ss_pred CCe-EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccccc--C-CCCH----HHHHHHHHHHHhcC
Q 018731 247 GLI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK--E-YVTP----EKFDFWKAYGESIG 315 (351)
Q Consensus 247 Gi~-v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~--~-~v~~----~e~~~~~~~~~~~G 315 (351)
|+. ++.|+|+|+ ++|.+++.++++.+.++++|+++++++. .| |+.+.... . ..++ +.+....+.+++.|
T Consensus 186 g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~G 265 (416)
T COG0635 186 GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAG 265 (416)
T ss_pred CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCC
Confidence 996 999999999 9999999999999999999999998765 66 77653211 1 2222 23344566778899
Q ss_pred cceeccCcccccccc
Q 018731 316 FRYVASGPLVRSSYR 330 (351)
Q Consensus 316 ~~~~~~~~~~r~~~~ 330 (351)
|.+++..++++.++.
T Consensus 266 y~~yeisnfa~~~~e 280 (416)
T COG0635 266 YRQYEISNFAKPGGE 280 (416)
T ss_pred CcEEeechhcCcchH
Confidence 999999999885433
|
|
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=166.14 Aligned_cols=214 Identities=11% Similarity=0.160 Sum_probs=147.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC-CC--CCCCchhHHHHHHHHHhCC--CcEEEEeccCCCCCCCCcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR-NP--APPDPMEPENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~-~~--~~~~~eei~~~~~~~~~~G--~~~I~ltgg~~~~l~~~~~~~~~~li~~ik 177 (351)
...+...-++|+.+|.||.++... .. ...+.+.+.++++.+.+.| +..|+|.||+|..+ .+.+.++++.++
T Consensus 52 ~~~LYvHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l----~~~L~~ll~~i~ 127 (433)
T PRK08629 52 KYMLYAHVPFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL----EDELAKTLELAK 127 (433)
T ss_pred cEEEEEEeCCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC----HHHHHHHHHHHH
Confidence 445566789999999999998632 11 1124566677776655544 66899999998644 268889999998
Q ss_pred HhCC--CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCH---HHHHHHHHHHHHhCCCCeEE
Q 018731 178 KQKP--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGY---EQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 178 ~~~p--~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~---~~~l~~i~~~~~~~~Gi~v~ 251 (351)
+.++ ++++++ .|+. ++++.++.|+++ ++++++|+||+++ ..+.+. +.++. ++.++.++.+++ .+..++
T Consensus 128 ~~f~i~eis~E~-~P~~-lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~--~~~~v~ 201 (433)
T PRK08629 128 KLFSIKEVSCES-DPNH-LDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKG--LFPIIN 201 (433)
T ss_pred HhCCCceEEEEe-Cccc-CCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhc--cCCeEE
Confidence 8753 345554 4554 489999999999 9999999999876 455553 46665 455666655554 444689
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccc-cCCCCHHHHHHHHHH---HHhcCcceeccCcc
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV-KEYVTPEKFDFWKAY---GESIGFRYVASGPL 324 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~-~~~v~~~e~~~~~~~---~~~~G~~~~~~~~~ 324 (351)
+++|+|+ |||.+++.++++++.++++++++++++. .| |+..... ....+.++...+.+. ... ||.++....+
T Consensus 202 ~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f 280 (433)
T PRK08629 202 VDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAF 280 (433)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEeccccc
Confidence 9999999 9999999999999999999999997554 44 6532111 112233332222222 222 9988766555
Q ss_pred ccc
Q 018731 325 VRS 327 (351)
Q Consensus 325 ~r~ 327 (351)
.+.
T Consensus 281 ~~~ 283 (433)
T PRK08629 281 SKK 283 (433)
T ss_pred CCC
Confidence 544
|
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=150.02 Aligned_cols=178 Identities=23% Similarity=0.355 Sum_probs=140.9
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCc---hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDP---MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM 184 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~---eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~ 184 (351)
.++++|+++|.||..+.......... +++.+.+......+...+.++||++. .. .++.++++.+++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~--~~---~~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPL--LY---PELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCC--cc---HhHHHHHHHHHhhCCCce
Confidence 46899999999999987543322222 35566666667788999999999973 22 378899999998766778
Q ss_pred EEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCH
Q 018731 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESD 262 (351)
Q Consensus 185 i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~ 262 (351)
+.+.|+...++++.++.|+++|++.+.+++|+.++ .++.+..+..++++++++++.+++ .|+.+.+.+++|+ +++.
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELRE--AGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHH--cCCCceEEEEEecCCChh
Confidence 87777766558999999999999999999999876 343332136799999999999999 8999999999999 6667
Q ss_pred HHHHHHHHHHHhCC-CCEEeeeccc-CC-CCCc
Q 018731 263 DDLKEAMADLRSID-VDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 263 e~~~~~l~~l~~lg-~d~i~i~~~l-~P-Tp~~ 292 (351)
+++.++++++.+.+ ++.+.++++. .| |+++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 99999999999988 8888886554 22 6654
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=157.00 Aligned_cols=205 Identities=15% Similarity=0.190 Sum_probs=143.4
Q ss_pred eEEEEeeccCCCC--------CCcCcccCCCCCCC---CCCchhH----HHHHHHHHhCCCcEEEEeccCCCCCCCCcHH
Q 018731 103 TATIMLLGDTCTR--------GCRFCAVKTSRNPA---PPDPMEP----ENTAKAIASWGVDYIVLTSVDRDDIPDGGSG 167 (351)
Q Consensus 103 ~~~~i~~s~gC~~--------~C~FC~~~~~~~~~---~~~~eei----~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~ 167 (351)
..-.+..+-.||+ .|+||+........ ....+++ .+..+.....+...++|+||+++.++ .+
T Consensus 18 ~k~~~~~g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~---~~ 94 (302)
T TIGR01212 18 FKITLHGGFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAP---VE 94 (302)
T ss_pred EEeecCCCCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCC---HH
Confidence 4455667889997 79999986543211 1222334 33333333333345899999987666 58
Q ss_pred HHHHHHHHHHHhCCC-cEEEEe-ecCCCCCHHHHHHHH---HcCC-CeeecchhchHH-HHhhhcCCCCCHHHHHHHHHH
Q 018731 168 HFARTVKAMKKQKPD-IMVECL-TSDFRGDLRAVETLV---HSGL-DVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKH 240 (351)
Q Consensus 168 ~~~~li~~ik~~~p~-i~i~~~-~~~~~~~~e~l~~L~---~aG~-~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~ 240 (351)
++.++++.+++. |+ +.+.+. .|+.+ +++.++.|+ ++|+ .++.+|+||+++ ..+.++ +++++++++++++.
T Consensus 95 ~L~~l~~~i~~~-~~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg~t~~~~~~ai~~ 171 (302)
T TIGR01212 95 VLKEMYEQALSY-DDVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RGHDFACYVDAVKR 171 (302)
T ss_pred HHHHHHHHHhCC-CCEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-CcChHHHHHHHHHH
Confidence 999999999874 54 344443 35543 776665555 5699 579999999876 455554 58999999999999
Q ss_pred HHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccc--c--CCCCHHHH-HHHHHHHH
Q 018731 241 AKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV--K--EYVTPEKF-DFWKAYGE 312 (351)
Q Consensus 241 ~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~--~--~~v~~~e~-~~~~~~~~ 312 (351)
+++ .|+.+++++|+|+ |||.+++.++++++.+++++.+.++.+. .| |+++... . ...+.+++ ..+....+
T Consensus 172 l~~--~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~ 249 (302)
T TIGR01212 172 ARK--RGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLE 249 (302)
T ss_pred HHH--cCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999 9999999999999 9999999999999999999999996443 34 7776321 1 23445553 34455555
Q ss_pred hcC
Q 018731 313 SIG 315 (351)
Q Consensus 313 ~~G 315 (351)
.+.
T Consensus 250 ~l~ 252 (302)
T TIGR01212 250 HLP 252 (302)
T ss_pred hCC
Confidence 443
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-18 Score=160.35 Aligned_cols=191 Identities=18% Similarity=0.217 Sum_probs=143.8
Q ss_pred EEEEeeccCCCCCCcCcccCCCC---CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~---~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
+-.+.+|++||.+|.||...... ....++.+|+.+.++.+.+.|++.|.||||+|. +. +++.++++.+++.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPl-lr----~dl~~li~~i~~~- 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPL-VR----RGCDQLVARLGKL- 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCC-cc----ccHHHHHHHHHhC-
Confidence 34456899999999999854321 123467889999999998999999999999973 33 4688899998875
Q ss_pred CCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeeeee
Q 018731 181 PDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLG 257 (351)
Q Consensus 181 p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~IvG 257 (351)
+++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.++ +..+++++++.++.+++ .|+ .+..++++-
T Consensus 89 ~~l~~i~itTNG~l-l~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~--~Gi~~v~in~v~~ 164 (329)
T PRK13361 89 PGLEELSLTTNGSR-LARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKA--AGFERIKLNAVIL 164 (329)
T ss_pred CCCceEEEEeChhH-HHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHH--cCCCceEEEEEEE
Confidence 344 4555566554 3468999999999999999999876 566666 46799999999999999 899 677776653
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc--ccccCCCCHHHHHH
Q 018731 258 LGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH--LTVKEYVTPEKFDF 306 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~--~~~~~~v~~~e~~~ 306 (351)
-|++.+++.+++++++++|++...+ .++ |.... +.....++.+++..
T Consensus 165 ~g~N~~ei~~~~~~~~~~gi~~~~i-e~m-P~g~~~~~~~~~~~~~~e~~~ 213 (329)
T PRK13361 165 RGQNDDEVLDLVEFCRERGLDIAFI-EEM-PLGEIDERRRARHCSSDEVRA 213 (329)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEE-ecc-cCCCccchhhccCcCHHHHHH
Confidence 3899999999999999999986544 443 63221 11234567766644
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-17 Score=157.49 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=141.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC--CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~--~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
....+.+|+.||.+|.||+..... ....++.+++.+.++.+.+.|+..|.|+||+|. +. .++.++++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPl-l~----~~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPL-LR----KDLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccC-Cc----hhHHHHHHHHHHc-
Confidence 556678899999999999876432 233567788889999888899999999999973 43 4688999999876
Q ss_pred CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 181 p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
++.+.+.|++.+++++.++.|+++|++.|.+++++.++ .++.+++...++++.+++++.+++ .|+.+...+++ ..
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~--~g~~v~i~~vv-~~ 165 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA--HGYPLTLNAVI-HR 165 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH--CCCceEEEEEe-ec
Confidence 56666777877789999999999999999999999754 677777434589999999999999 99987766654 37
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.+++.++++++.++|++.+.+.
T Consensus 166 ~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 166 HNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999998884
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=144.74 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=124.8
Q ss_pred EeeccCCCCCCcCcccCCC--C-CCCCCCchhHHHHHHHH-HhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh-CC
Q 018731 107 MLLGDTCTRGCRFCAVKTS--R-NPAPPDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-KP 181 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~--~-~~~~~~~eei~~~~~~~-~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~-~p 181 (351)
+.++++|+++|.||..+.. . .....+++++.+.++.+ ...|+..+.++||+|... ..+.+++..+.+. ..
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~~ 75 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKKR 75 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTCT
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhcc
Confidence 4679999999999999874 2 12335678899999988 588888899999987433 3566666666654 24
Q ss_pred CcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-
Q 018731 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL- 258 (351)
Q Consensus 182 ~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~--~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl- 258 (351)
++.+...+++...+++.++.++++|++.+.++++|.++ ..+.++ ++.++++++++++.+++ .|+.....+|+|+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~--~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKE--AGIPRVIIFIVGLP 152 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHH--TTSETEEEEEEEBT
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHH--cCCCcEEEEEEEeC
Confidence 67777777777666999999999999999999999876 457775 57899999999999999 9998556667777
Q ss_pred CCCHHHHHHHHHHH
Q 018731 259 GESDDDLKEAMADL 272 (351)
Q Consensus 259 gEt~e~~~~~l~~l 272 (351)
|+|++++.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999885
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=153.45 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=136.9
Q ss_pred EEEEeeccCCCCCCcCcccCC-CC----CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKT-SR----NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~-~~----~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
+-.+.+|++||.+|.||.... .. ....++.+++.+.++.+.+.|++.|.|+||+|. +. .++.++++.+++
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPl-l~----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPL-LR----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccc-cc----CCHHHHHHHHHh
Confidence 444578999999999998764 21 123467889999999998999999999999973 32 357788888876
Q ss_pred hCCCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeee
Q 018731 179 QKPDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIM 255 (351)
Q Consensus 179 ~~p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~I 255 (351)
. +++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.+++++.+++++++.++.+++ .|+. +..+++
T Consensus 86 ~-~gi~~v~itTNG~l-l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~--~G~~~v~in~v 161 (334)
T TIGR02666 86 L-PGIEDIALTTNGLL-LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA--AGLEPVKLNTV 161 (334)
T ss_pred c-CCCCeEEEEeCchh-HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH--cCCCcEEEEEE
Confidence 4 456 6666666544 5678999999999999999999876 456565235699999999999999 9997 888877
Q ss_pred eeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
+.-|.+.+++.+.+++++++|++. .+..++ |
T Consensus 162 v~~g~n~~ei~~l~~~~~~~gv~~-~~ie~m-p 192 (334)
T TIGR02666 162 VMRGVNDDEIVDLAEFAKERGVTL-RFIELM-P 192 (334)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCeE-EEEecc-C
Confidence 655899999999999999999973 442343 6
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=153.72 Aligned_cols=171 Identities=17% Similarity=0.223 Sum_probs=140.3
Q ss_pred eEEEEeeccCCCCCCcCcccCCC--CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTS--RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~--~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
....+.+|+.||.+|.||..+.. +....++.+++.+.++++.+.|+..|.|+||+|. +. +++.++++.+++.
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPl-l~----~~~~~ii~~~~~~- 80 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPL-AR----PDLVELVAHARRL- 80 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccc-cc----ccHHHHHHHHHHc-
Confidence 45567889999999999987542 1224577888889999988899999999999974 43 4688999999886
Q ss_pred CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 181 p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
++.+.+.|++.+++++.++.|+++|++.|.+++++.++ .++.+++...++++.+++++.+++ .|+.+...+++ ..
T Consensus 81 -g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~--~g~~v~v~~vv-~~ 156 (358)
T TIGR02109 81 -GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA--AGLPLTLNFVI-HR 156 (358)
T ss_pred -CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh--CCCceEEEEEe-cc
Confidence 56666777887789999999999999999999999865 576676334579999999999999 89987666554 27
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.+++.++++++.++|++.+.+.
T Consensus 157 ~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 157 HNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999988873
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=152.58 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=134.4
Q ss_pred EEEEeeccCCCCCCcCcccCCC----CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTS----RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~----~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+-.+.+|.+||.+|.||..... .....++++++.+.++.+.+.|++.|.|+||+|. +. .++.++++.+++.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPl-l~----~~l~~li~~i~~~ 92 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPL-LR----KDLEDIIAALAAL 92 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCc-Cc----cCHHHHHHHHHhc
Confidence 4446789999999999987642 1223467889999998888899999999999973 32 3578888888875
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeeeee
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLG 257 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~IvG 257 (351)
.....+.+.|++.. ..+.++.|+++|++++++++++.++ .++.++ +..++++++++++.+++ .|+ .+..++++-
T Consensus 93 ~~~~~i~itTNG~l-l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~--~g~~~v~i~~vv~ 168 (331)
T PRK00164 93 PGIRDLALTTNGYL-LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALA--AGLTPVKVNAVLM 168 (331)
T ss_pred CCCceEEEEcCchh-HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHH--CCCCcEEEEEEEE
Confidence 32345666566543 4578899999999999999999876 465555 35799999999999999 898 777777653
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 258 LGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
-|.+.+++.+.+++++++|++.-.+ .|+
T Consensus 169 ~g~n~~ei~~l~~~~~~~gv~v~~i-e~~ 196 (331)
T PRK00164 169 KGVNDDEIPDLLEWAKDRGIQLRFI-ELM 196 (331)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEE-Eee
Confidence 3889999999999999999864333 454
|
|
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-16 Score=147.78 Aligned_cols=180 Identities=18% Similarity=0.281 Sum_probs=131.7
Q ss_pred eEEEEeeccCCCC----CCcCcccCCCCCCCCCCchhHHHHHHHHHh-CCCcE----E-EEecc---CCCCCCCCcHHHH
Q 018731 103 TATIMLLGDTCTR----GCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDY----I-VLTSV---DRDDIPDGGSGHF 169 (351)
Q Consensus 103 ~~~~i~~s~gC~~----~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~----I-~ltgg---~~~~l~~~~~~~~ 169 (351)
..+++..|+||++ +|.||++.... ....+++.+.+.++.+.+ .+.+. + .+++| ++..++ .+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~---~~~~ 90 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP---KETR 90 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC---HHHH
Confidence 5566788999999 59999866533 223467777777766543 33321 2 35665 333334 4677
Q ss_pred HHHHHHHHHhCC--CcEEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHHHh
Q 018731 170 ARTVKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 170 ~~li~~ik~~~p--~i~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
.++++.+++... .+.+++ .++.+ +++.++.|+++|++ +|++|+||+++ .. +.++ ++++.++..++++.+++
T Consensus 91 ~~i~~~l~~~~~~~~i~~es-rpd~i-~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~- 166 (313)
T TIGR01210 91 NYIFEKIAQRDNLKEVVVES-RPEFI-DEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARK- 166 (313)
T ss_pred HHHHHHHHhcCCcceEEEEe-CCCcC-CHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHH-
Confidence 889988887421 233443 45554 89999999999998 89999999876 45 3555 68999999999999999
Q ss_pred CCCCeEEEeeeeeC-C----CCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 245 KKGLITKSSIMLGL-G----ESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 245 ~~Gi~v~~~~IvGl-g----Et~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
.|+.+.+++|+|+ + |+.+++.++++++.+++ +++.+++.. .| |+++
T Consensus 167 -~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~ 219 (313)
T TIGR01210 167 -YGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVE 219 (313)
T ss_pred -cCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHH
Confidence 9999999999998 5 55677888999999999 999986432 34 7654
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-16 Score=149.39 Aligned_cols=173 Identities=17% Similarity=0.249 Sum_probs=132.8
Q ss_pred EEEEeeccCCCCCCcCcccCCCC----CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSR----NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~----~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+--+.+|++||.+|.||...... ....++.+++.+.++.+.+.|++.|.||||+|. +. .++.++++.+++.
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPl-lr----~dl~eli~~l~~~ 133 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPT-LR----KDIEDICLQLSSL 133 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCc-ch----hhHHHHHHHHHhc
Confidence 33467899999999999875321 112367789999998888999999999999973 33 4688899988875
Q ss_pred CCCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeeee
Q 018731 180 KPDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIML 256 (351)
Q Consensus 180 ~p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~Iv 256 (351)
+++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.++ +...++++++.|+.+++ .|+ .+..++++
T Consensus 134 -~gi~~i~itTNG~l-L~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~--~G~~~vkin~vv 208 (373)
T PLN02951 134 -KGLKTLAMTTNGIT-LSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIE--LGYNPVKVNCVV 208 (373)
T ss_pred -CCCceEEEeeCcch-HHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHH--cCCCcEEEEEEe
Confidence 455 3555566554 4567899999999999999999865 565554 24578999999999999 887 47777665
Q ss_pred eCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 257 GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
--|.|.+++.+.++++++.+++.-.+ .++ |
T Consensus 209 ~~g~N~~Ei~~li~~a~~~gi~vr~i-e~m-P 238 (373)
T PLN02951 209 MRGFNDDEICDFVELTRDKPINVRFI-EFM-P 238 (373)
T ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEE-Ecc-c
Confidence 44899999999999999999764333 454 5
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=147.74 Aligned_cols=165 Identities=16% Similarity=0.263 Sum_probs=132.0
Q ss_pred EEEEeeccCCCCCCcCcccCCCCC--CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRN--PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~--~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
.-.+.+|++||.+|.||....... ...++.+++.+.++.+...|++.|.|+||+|. +. ..+.++++.+++.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPl-l~----~~l~~iv~~l~~~-- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPL-LR----KDLIEIIRRIKDY-- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccc-cc----cCHHHHHHHHHhC--
Confidence 445678999999999998764322 13467788988888888899999999999973 33 3577888888875
Q ss_pred Cc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeC
Q 018731 182 DI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL 258 (351)
Q Consensus 182 ~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGl 258 (351)
++ .+.+.|++.. ..+.++.|+++|+++|++++++.++ .++.++ ++.++++++++++.+++ .|+. +...+++--
T Consensus 84 g~~~v~i~TNG~l-l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~--~G~~~v~i~~v~~~ 159 (302)
T TIGR02668 84 GIKDVSMTTNGIL-LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVD--AGLTPVKLNMVVLK 159 (302)
T ss_pred CCceEEEEcCchH-HHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHH--cCCCcEEEEEEEeC
Confidence 44 5655555543 4688899999999999999999865 566665 35799999999999999 8986 777776634
Q ss_pred CCCHHHHHHHHHHHHhCCCCE
Q 018731 259 GESDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~ 279 (351)
|++.+++.+.+++++++|++.
T Consensus 160 g~n~~ei~~~~~~~~~~g~~~ 180 (302)
T TIGR02668 160 GINDNEIPDMVEFAAEGGAIL 180 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCEE
Confidence 899999999999999999873
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=151.27 Aligned_cols=241 Identities=20% Similarity=0.287 Sum_probs=172.0
Q ss_pred cceeccccCCCCCCCCCchhHhhhccCCcchHHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCC
Q 018731 36 QRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTR 115 (351)
Q Consensus 36 ~~~~~~~~~~~~~~~~~p~~i~~~~~~g~~~~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~ 115 (351)
+-..||.+-|+...-.+|.|+.... .|..--.+ +| .+++.+..-. -++ .+ ...+.+|+.+.+||++
T Consensus 167 ~~kmVdivaGPDaYrDLPrll~~~~-~g~~~in~--~L---sldetyadv~--pvr---~~---~~s~tAFvSiMRGCdN 232 (552)
T KOG2492|consen 167 REKMVDIVAGPDAYRDLPRLLAVAR-GGQNGINV--LL---SLDETYADVQ--PVR---VS---SSSTTAFVSIMRGCDN 232 (552)
T ss_pred hhhceeeeeCchhhhhhHHHHHHHh-ccCCceeE--EE---eccchhcccc--eee---cc---CccchhHHHHHhcccc
Confidence 4557788888888778888876332 23321110 01 2222222111 111 11 1126788999999999
Q ss_pred CCcCcccCCCCCCCCCCc-hhHHHHHHHHHhCCCcEEEEeccCCCCCCC--------------------------CcHHH
Q 018731 116 GCRFCAVKTSRNPAPPDP-MEPENTAKAIASWGVDYIVLTSVDRDDIPD--------------------------GGSGH 168 (351)
Q Consensus 116 ~C~FC~~~~~~~~~~~~~-eei~~~~~~~~~~G~~~I~ltgg~~~~l~~--------------------------~~~~~ 168 (351)
-|+||.+|..++..+..| +.|+++++.+.+.|+++|.|.|.+...+.| +| -.
T Consensus 233 MCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~gG-l~ 311 (552)
T KOG2492|consen 233 MCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQGG-LR 311 (552)
T ss_pred ccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeecccCCC-cc
Confidence 999999999887655555 789999999999999999999976322211 12 37
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCC-CCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 169 FARTVKAMKKQKPDIMVECLTSDF-RGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 169 ~~~li~~ik~~~p~i~i~~~~~~~-~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
|..+++.+....|++++...+|.- ...+|.++.+++.- +..+.+-.+|.+. ..++++ ++++.+..++.+..+++.
T Consensus 312 Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mr-Rgysreayl~lv~~Irs~ 390 (552)
T KOG2492|consen 312 FAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMR-RGYSREAYLELVAHIRSM 390 (552)
T ss_pred HHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHH-ccCChHhhhhHHHHHHhh
Confidence 899999999999999887655421 12578888888763 2333444677654 445555 588999999999999998
Q ss_pred CCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCc
Q 018731 245 KKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 245 ~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~ 292 (351)
-||...+++||.|+ |||++|.+.|+-++++.|-|++.++.|. +- |..|
T Consensus 391 iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay 441 (552)
T KOG2492|consen 391 IPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAY 441 (552)
T ss_pred CCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhh
Confidence 89999999999999 9999999999999999999998887666 33 6555
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=146.26 Aligned_cols=164 Identities=19% Similarity=0.249 Sum_probs=132.6
Q ss_pred EEEeeccCCCCCCcCcccCC-C-CCC--CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 105 TIMLLGDTCTRGCRFCAVKT-S-RNP--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~-~-~~~--~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
--+.+|+.||++|.||-..- . ..+ ..++++|+...++.+.+.|++.|-||||+| .+. .++.++++.+++.
T Consensus 13 LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP-llR----~dl~eIi~~l~~~- 86 (322)
T COG2896 13 LRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEP-LLR----KDLDEIIARLARL- 86 (322)
T ss_pred EEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCc-hhh----cCHHHHHHHHhhc-
Confidence 33568999999999998754 1 122 246789999999999999999999999997 343 5788889888876
Q ss_pred CCc-EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeee
Q 018731 181 PDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLG 257 (351)
Q Consensus 181 p~i-~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvG 257 (351)
++ .+.+ |+++.+.+..++.|++||+++|+++++|+++ .++.+. ....++++++.|+.|.+ .|+. |+.++++=
T Consensus 87 -~~~~isl-TTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT-~~~~~~~Vl~GI~~A~~--~Gl~pVKlN~Vv~ 161 (322)
T COG2896 87 -GIRDLSL-TTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKIT-GRDRLDRVLEGIDAAVE--AGLTPVKLNTVLM 161 (322)
T ss_pred -ccceEEE-ecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHh-CCCcHHHHHHHHHHHHH--cCCCceEEEEEEe
Confidence 32 4444 4444457889999999999999999999987 466665 34569999999999999 9996 99988873
Q ss_pred CCCCHHHHHHHHHHHHhCCCCE
Q 018731 258 LGESDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d~ 279 (351)
=|-+.+++.+.++++++.|+..
T Consensus 162 kgvNd~ei~~l~e~~~~~~~~l 183 (322)
T COG2896 162 KGVNDDEIEDLLEFAKERGAQL 183 (322)
T ss_pred cCCCHHHHHHHHHHHhhcCCce
Confidence 3889999999999999999853
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=144.53 Aligned_cols=168 Identities=12% Similarity=0.148 Sum_probs=129.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
....+.+|..||.+|.||........ ..++++++.+.+ .+.|+..|.|+||+|. +. +++.++++.+++.
T Consensus 28 l~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i---~e~g~~~V~i~GGEPL-L~----pdl~eiv~~~~~~ 99 (318)
T TIGR03470 28 LVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAV---DECGAPVVSIPGGEPL-LH----PEIDEIVRGLVAR 99 (318)
T ss_pred CEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHH---HHcCCCEEEEeCcccc-cc----ccHHHHHHHHHHc
Confidence 55567789999999999987543211 235666665544 4568999999999973 43 4688899998876
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
+..+.+.|++.++ .+.++.++++|...|++++++.++.++..++...++++++++|+.+++ .|+.+...+.+=-+
T Consensus 100 --g~~v~l~TNG~ll-~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~--~G~~v~v~~tv~~~ 174 (318)
T TIGR03470 100 --KKFVYLCTNALLL-EKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA--RGFRVTTNTTLFND 174 (318)
T ss_pred --CCeEEEecCceeh-HHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH--CCCcEEEEEEEeCC
Confidence 4566666776655 456888999999999999999877665444345799999999999999 89987776655227
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.+++.+.++++.++|++.+.+.
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999988874
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-15 Score=147.31 Aligned_cols=202 Identities=17% Similarity=0.250 Sum_probs=146.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCC-----C-C--CCCCCchhHHHHHHHHHhC--CCcEEEEec-cCCCCCCCCcHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTS-----R-N--PAPPDPMEPENTAKAIASW--GVDYIVLTS-VDRDDIPDGGSGHFAR 171 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~-----~-~--~~~~~~eei~~~~~~~~~~--G~~~I~ltg-g~~~~l~~~~~~~~~~ 171 (351)
-+..+.++++||.+|.||...+. + + ...++++|+.+.++.+... ++..|.|+| |+|. +. .+...+
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPL-l~---~e~~~~ 99 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPL-AN---IGKTFQ 99 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcc-cC---ccccHH
Confidence 45667889999999999986432 1 1 1346788998888877653 577899999 8873 32 246778
Q ss_pred HHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhh------cCC---CC-----CHHHHHH
Q 018731 172 TVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIV------RDP---RA-----GYEQSLE 236 (351)
Q Consensus 172 li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~------r~~---~~-----~~~~~l~ 236 (351)
+++.+++..|++.+.+.|++.. .++.++.|+++|+|.|.+++.+.++ .++.+ +++ +. .+++.++
T Consensus 100 ~l~~~~~~~~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~ 178 (442)
T TIGR01290 100 TLELVARQLPDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLE 178 (442)
T ss_pred HHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHH
Confidence 8888988878888877676654 5899999999999999999998765 44322 111 11 1566789
Q ss_pred HHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCC-----cccccCCCCHHHHHHHHHHH
Q 018731 237 VLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPL-----HLTVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 237 ~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~-----~~~~~~~v~~~e~~~~~~~~ 311 (351)
.++.+.+ .|+.+...+++--|.|++++.+++++++++|++.+.+.+|. |.|. .+.....++++++..+++.+
T Consensus 179 ~l~~l~~--~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~-~~p~~G~~~~~~~~~~ps~e~l~~~~~~~ 255 (442)
T TIGR01290 179 GLEKLTE--RGILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLI-SAPEHGTVYGLNGQREPDPDELAALRDRL 255 (442)
T ss_pred HHHHHHh--CCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCC-CccccCCccCcCCCCCcCHHHHHHHHHHH
Confidence 9999998 89887666555336777999999999999999888776553 4332 22223557788888777654
Q ss_pred H
Q 018731 312 E 312 (351)
Q Consensus 312 ~ 312 (351)
+
T Consensus 256 ~ 256 (442)
T TIGR01290 256 E 256 (442)
T ss_pred H
Confidence 4
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=154.65 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=138.0
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC--CCCCchhHHHHHHHHHhC--CCcEEE--EeccCCCCCC----C---------
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP--APPDPMEPENTAKAIASW--GVDYIV--LTSVDRDDIP----D--------- 163 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~--~~~~~eei~~~~~~~~~~--G~~~I~--ltgg~~~~l~----~--------- 163 (351)
....+.+++||+.+|+||+++..++. ..++.++|+++++.+.+. |+++++ |+|.+...+. +
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 45677899999999999999987765 235678999999999863 999998 7776643321 0
Q ss_pred -------------CcHHHHHHHHHHHHHhCCCc-EEEEee--c-CCC-CCHHHHHHHHHcCCC-eeecchhchHH-HHhh
Q 018731 164 -------------GGSGHFARTVKAMKKQKPDI-MVECLT--S-DFR-GDLRAVETLVHSGLD-VFAHNIETVKR-LQRI 223 (351)
Q Consensus 164 -------------~~~~~~~~li~~ik~~~p~i-~i~~~~--~-~~~-~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~ 223 (351)
.+-..+.+|++.|++. |++ .+.+.+ + ++. .+++.++.|++.++. .+.+.+|+.++ +.+.
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~ 530 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSK 530 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHH
Confidence 1125789999999874 565 333322 2 221 258899999997766 55678999765 5555
Q ss_pred hcCCC-CCHHHHHHHHHHHHHhCC-CCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCC
Q 018731 224 VRDPR-AGYEQSLEVLKHAKLSKK-GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290 (351)
Q Consensus 224 ~r~~~-~~~~~~l~~i~~~~~~~~-Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp 290 (351)
++.++ .++++..+.++.+++..+ ++.+.++||+|+ |||++|+.++++++++++++.-.+ +.+.|||
T Consensus 531 M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQV-Q~FTPtP 599 (707)
T PRK01254 531 MMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV-QNFYPSP 599 (707)
T ss_pred hCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCccee-eeeecCC
Confidence 65232 688999999999876432 456778999999 999999999999999999887777 4556877
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=143.93 Aligned_cols=204 Identities=17% Similarity=0.181 Sum_probs=145.0
Q ss_pred ceeeEEEEeeccCCCC-CCcCccc-------CCCC---CC-------CCCCc-hhHHHHHHHHHhCC--Cc--EEEEecc
Q 018731 100 GIATATIMLLGDTCTR-GCRFCAV-------KTSR---NP-------APPDP-MEPENTAKAIASWG--VD--YIVLTSV 156 (351)
Q Consensus 100 ~~~~~~~i~~s~gC~~-~C~FC~~-------~~~~---~~-------~~~~~-eei~~~~~~~~~~G--~~--~I~ltgg 156 (351)
+|...++|--=-.||+ +|.||-- +.+. .| ...+| +++...++++...| ++ +++|.||
T Consensus 65 gv~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GG 144 (522)
T TIGR01211 65 GVAVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGG 144 (522)
T ss_pred CeEEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECC
Confidence 3556666655567994 7999964 2111 11 01223 46667777777766 43 4488999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhCCC-------------------------cEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 157 DRDDIPDGGSGHFARTVKAMKKQKPD-------------------------IMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 157 ~~~~l~~~~~~~~~~li~~ik~~~p~-------------------------i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+...++ .++...+++.+.+.+++ +.+.+- .|+.. +++.++.|+++|+++|
T Consensus 145 Tft~l~---~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i-~~e~L~~L~~~G~~rV 220 (522)
T TIGR01211 145 TFPARD---LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYC-REEHIDRMLKLGATRV 220 (522)
T ss_pred CcccCC---HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcC-CHHHHHHHHHcCCCEE
Confidence 987777 46666666666654322 222222 46654 8999999999999999
Q ss_pred ecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh---CCCCEEeeecc
Q 018731 211 AHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS---IDVDILTLGQY 285 (351)
Q Consensus 211 ~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~---lg~d~i~i~~~ 285 (351)
++|+||+++ ..+.++ ++++.++++++++.+++ .|+.+++++|+|+ |+|.+++.++++.+.+ +++|.+.+++.
T Consensus 221 slGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~--~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl 297 (522)
T TIGR01211 221 ELGVQTIYNDILERTK-RGHTVRDVVEATRLLRD--AGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPT 297 (522)
T ss_pred EEECccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecc
Confidence 999999876 455554 58999999999999999 9999999999999 9999999999999974 99999999754
Q ss_pred c-CC-CCCccc--c--cCCCCHHHHHHHHHH
Q 018731 286 L-QP-TPLHLT--V--KEYVTPEKFDFWKAY 310 (351)
Q Consensus 286 l-~P-Tp~~~~--~--~~~v~~~e~~~~~~~ 310 (351)
. .| |+++.. . ....+.+++..+...
T Consensus 298 ~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~ 328 (522)
T TIGR01211 298 LVTRGTELYELWKRGEYKPYTTEEAVELIVE 328 (522)
T ss_pred eeeCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4 44 777521 1 123455555554433
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=149.02 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=121.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCC--CCCchhHHHHHHHHHhC-CCcEEE--EeccCCCCCC---------------
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPA--PPDPMEPENTAKAIASW-GVDYIV--LTSVDRDDIP--------------- 162 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~--~~~~eei~~~~~~~~~~-G~~~I~--ltgg~~~~l~--------------- 162 (351)
....+.+++||+.+|+||+++..++.. .++.++|+++++.+.+. |++.++ ++|.+...+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 445667899999999999999877653 45678999999998876 788764 3332211110
Q ss_pred -----------CCcHHHHHHHHHHHHHhCCCc-EEEEee---cCCC---CCHHHHHHHHHcCCC-eeecchhchHH-HHh
Q 018731 163 -----------DGGSGHFARTVKAMKKQKPDI-MVECLT---SDFR---GDLRAVETLVHSGLD-VFAHNIETVKR-LQR 222 (351)
Q Consensus 163 -----------~~~~~~~~~li~~ik~~~p~i-~i~~~~---~~~~---~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~ 222 (351)
+.+...+.+|+++|++. |++ ++.+.+ .+.+ .+++.++.|.+.++. .+.+++|+.++ +.+
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 01124789999999874 554 332211 1222 134588888886444 57889999765 556
Q ss_pred hhcCCCCCHH---HHHHHHH-HHHHhCCCCe--EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 223 IVRDPRAGYE---QSLEVLK-HAKLSKKGLI--TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 223 ~~r~~~~~~~---~~l~~i~-~~~~~~~Gi~--v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.++ +. +.+ +.++.++ .+++ .|+. +.++||+|+ |||.+|+.++++++++++++.++++.|.
T Consensus 451 ~M~-K~-~~~~~~~f~~~~~~i~~~--~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fT 517 (620)
T PRK00955 451 LMG-KP-SREVYDKFVKKFDRINKK--LGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFY 517 (620)
T ss_pred HhC-CC-CHHHHHHHHHHHHHhhhh--cCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeee
Confidence 665 22 433 3333333 3344 6665 899999999 9999999999999999999998886454
|
|
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=132.26 Aligned_cols=203 Identities=12% Similarity=0.128 Sum_probs=141.4
Q ss_pred EEEeeccCCCCCCcCcccCCCC---CCCCCCchhHHHHHHHHHh---CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIAS---WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~---~~~~~~~eei~~~~~~~~~---~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
..+..+.|||.+|.||..+... ....++++++.+.+..... .....|+|+||+|. +. .+.+.++++.+++
T Consensus 22 ~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPl-l~---~~~~~~l~~~~k~ 97 (246)
T PRK11145 22 RFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAI-LQ---AEFVRDWFRACKK 97 (246)
T ss_pred EEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHh-cC---HHHHHHHHHHHHH
Confidence 4457799999999999976532 1223667888777665432 23457999999973 33 3456799999998
Q ss_pred hCCCcEEEEeecCCCC-CHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--ee
Q 018731 179 QKPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SI 254 (351)
Q Consensus 179 ~~p~i~i~~~~~~~~~-~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~ 254 (351)
. ++.+.+.|++... ..+.++.+.+. +|.+.+++++.++ .++.++ +.+.+..++.++.+.+ .|+.+.. .+
T Consensus 98 ~--g~~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~--g~~~~~~l~~i~~l~~--~g~~v~i~~~l 170 (246)
T PRK11145 98 E--GIHTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLV--GVSNHRTLEFARYLAK--RNQKTWIRYVV 170 (246)
T ss_pred c--CCCEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhccccc--CCChHHHHHHHHHHHh--CCCcEEEEEEE
Confidence 6 5666665666542 35777877764 8999999999866 566666 3456788999999988 7776544 44
Q ss_pred eeeCCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCC------c----ccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 255 MLGLGESDDDLKEAMADLRSID-VDILTLGQYLQPTPL------H----LTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~PTp~------~----~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
+-|+.++++++.++++++++++ +..+.+.+| +|.+. . +......++++++++++++++.|+...
T Consensus 171 i~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 171 VPGWTDDDDSAHRLGEFIKDMGNIEKIELLPY-HELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcceEEEecC-CccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 5566788889999999999886 456666433 23211 0 112356788899999998888887643
|
|
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=128.98 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=136.4
Q ss_pred EEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCC---CcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G---~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
.++..+.|||++|.||..+.... ...++++++.+.++.+...+ ...|.|+||+|. +. .+.+.++++.+++
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPl-l~---~~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPL-LQ---PEFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccc-cC---HHHHHHHHHHHHH
Confidence 45577899999999998764321 12367788877777655432 257999999973 33 3456799999988
Q ss_pred hCCCcEEEEeecCCCC-CHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee
Q 018731 179 QKPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (351)
Q Consensus 179 ~~p~i~i~~~~~~~~~-~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv 256 (351)
. ++.+.+.|++... ..+.++.+.+ .++.+.+++++.++ .++.++ +.++++.+++++.+++ .|+.+...+++
T Consensus 93 ~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~--g~~~~~v~~~i~~l~~--~g~~~~v~~vv 165 (235)
T TIGR02493 93 L--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT--GVSLQPTLDFAKYLAK--RNKPIWIRYVL 165 (235)
T ss_pred C--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH--CCCcHHHHHHHHHHHh--CCCcEEEEEee
Confidence 6 5556665666432 2456666666 47889999999865 566665 3488999999999999 88876655554
Q ss_pred --eCCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCCc----------ccccCCCCHHHHHHHHHHHHh
Q 018731 257 --GLGESDDDLKEAMADLRSID-VDILTLGQYLQPTPLH----------LTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 257 --GlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~PTp~~----------~~~~~~v~~~e~~~~~~~~~~ 313 (351)
|..++.+++.++++++.+++ +..+.+.+| .|.... ......++.++++++++++++
T Consensus 166 ~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 166 VPGYTDSEEDIEALAEFVKTLPNVERVEVLPY-HQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred eCCcCCCHHHHHHHHHHHHhCCCCceEEecCC-CcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 44578999999999999999 566666433 342110 112245677888888777653
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=133.27 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=137.6
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
....+.+|++|+.+|+||......+. ..++.+++.+.++.+.+ .|+.+|+||||+|..++ .+++.++++.+++
T Consensus 88 ~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~---~~~L~~ll~~l~~ 164 (321)
T TIGR03822 88 DRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLS---PRRLGDIMARLAA 164 (321)
T ss_pred CEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCC---HHHHHHHHHHHHh
Confidence 45667789999999999997653221 23455788888888775 48999999999985444 3689999999987
Q ss_pred hCCCc---EEEEee---cCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 179 QKPDI---MVECLT---SDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 179 ~~p~i---~i~~~~---~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
. +.+ ++.... +....+++.++.|+++|+. +.+++++... ..-.++.+++++.+++ .|+.+..
T Consensus 165 i-~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~--------~el~~~~~~ai~~L~~--~Gi~v~~ 232 (321)
T TIGR03822 165 I-DHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHA--------RELTAEARAACARLID--AGIPMVS 232 (321)
T ss_pred C-CCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCCh--------hhcCHHHHHHHHHHHH--cCCEEEE
Confidence 4 333 333211 2234589999999999954 6777777422 1124788999999999 9998766
Q ss_pred eeee--eCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 253 SIML--GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 253 ~~Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
..++ |.+++.+++.++++++.++|+....++ .+.|++.. ..-.++.++..++.+.++
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~-~~~p~~g~--~~f~~~~~~~~~i~~~l~ 291 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFVECRIKPYYLH-HLDLAPGT--AHFRVTIEEGQALVRALR 291 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEE-ecCCCCCc--ccccCcHHHHHHHHHHHH
Confidence 5444 779999999999999999999888884 44675443 122467777666544443
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-14 Score=122.34 Aligned_cols=203 Identities=19% Similarity=0.203 Sum_probs=155.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+..+++.|..+|.+|.-.+.+.....+.+++++...++.+.|...+.++||-.+.. .-.++.|.+.+++++++. +
T Consensus 11 ~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg-~VPl~kf~d~lK~lke~~-~ 88 (275)
T COG1856 11 FISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRG-KVPLWKFKDELKALKERT-G 88 (275)
T ss_pred CceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCC-CccHHHHHHHHHHHHHhh-C
Confidence 66777889999999999998775544455567888888888999999999999975333 234789999999999874 6
Q ss_pred cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--C
Q 018731 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G 259 (351)
Q Consensus 183 i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--g 259 (351)
+.+.+ +.++ .+++.++.++++++|.+++.+=+-++. .+.+. -..+.++.++.++.+++ .|+++.-.+++|+ |
T Consensus 89 l~ina-HvGf-vdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~-l~ksv~dyl~~l~~L~e--~~irvvpHitiGL~~g 163 (275)
T COG1856 89 LLINA-HVGF-VDESDLEKLKEELVDVVSLDFVGDNDVIKRVYK-LPKSVEDYLRSLLLLKE--NGIRVVPHITIGLDFG 163 (275)
T ss_pred eEEEE-Eeee-ccHHHHHHHHHhcCcEEEEeecCChHHHHHHHc-CCccHHHHHHHHHHHHH--cCceeceeEEEEeccC
Confidence 66655 2344 489999999999999998765444442 33333 24689999999999999 9999999999999 4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc-ccccCCCCHHHHHHHHHHHHhc
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH-LTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~-~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
--.-| .+.++.|.+..+|.+.+ .-+.|||.. +.....++++|..++.+++++.
T Consensus 164 ki~~e-~kaIdiL~~~~~DalVl-~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~ 217 (275)
T COG1856 164 KIHGE-FKAIDILVNYEPDALVL-VVLIPTPGTKMGNSPPPPVEEAIKVVKYARKK 217 (275)
T ss_pred cccch-HHHHHHHhcCCCCeEEE-EEEecCCchhccCCCCcCHHHHHHHHHHHHHh
Confidence 44444 46779999999998877 355687664 2345677888888888888764
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=145.19 Aligned_cols=184 Identities=22% Similarity=0.290 Sum_probs=124.4
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC---cHHHHHHHHHHHHHhC
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG---GSGHFARTVKAMKKQK 180 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~---~~~~~~~li~~ik~~~ 180 (351)
...+.+++||+++|.||..+...+....+++.++++++.+.+.|.+.+.+..++...+... ....+..+...+.+..
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIERG 278 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHHh
Confidence 4667789999999999999864212334566777777766666655543221111111000 0123333332333332
Q ss_pred C-C---cEEEEe--ecCCCCC-HHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHH-HHHHHHHhCCCCeEE
Q 018731 181 P-D---IMVECL--TSDFRGD-LRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLE-VLKHAKLSKKGLITK 251 (351)
Q Consensus 181 p-~---i~i~~~--~~~~~~~-~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~-~i~~~~~~~~Gi~v~ 251 (351)
. + +.+.+. .++. .+ ++.++.++++|..++.+|+||.++ +.+.++ ++.+.++.++ +++.+.+ .|+.+.
T Consensus 279 ~~~~~~~~~~~~~~r~d~-~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~--~~~~~~ 354 (490)
T COG1032 279 LRKGCRVHISAPSLRADT-VTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKE--HGLRVK 354 (490)
T ss_pred cccCceeeeeccccCchh-cCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHh--CCceee
Confidence 1 1 233321 2333 35 899999999999999999999876 455565 5889999995 9999999 999999
Q ss_pred EeeeeeC-CCCHHHHHHH---HHHHHhCCCC-EEeeecccCC---CCCc
Q 018731 252 SSIMLGL-GESDDDLKEA---MADLRSIDVD-ILTLGQYLQP---TPLH 292 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~---l~~l~~lg~d-~i~i~~~l~P---Tp~~ 292 (351)
.++|+|+ |||.+++.++ ++++++++.. .+.++ ++.| |+++
T Consensus 355 ~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~-~~~p~p~t~~~ 402 (490)
T COG1032 355 LYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPS-PFVPLPGTPLQ 402 (490)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEe-eeeCCCCCchh
Confidence 9999999 9999999998 7888999986 67664 4445 7665
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-14 Score=126.55 Aligned_cols=201 Identities=18% Similarity=0.235 Sum_probs=140.0
Q ss_pred eccCCCCCCcCcccCCCCCC--CC----CCchhHHHHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 109 LGDTCTRGCRFCAVKTSRNP--AP----PDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~~--~~----~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
.+.||+.+|.||++..+.-. +. .+++.+++..+..++. +.-+..|-|+..+.+. .++.++++++++.
T Consensus 113 p~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY----P~l~~lVqalk~~- 187 (414)
T COG2100 113 PSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY----PHLVDLVQALKEH- 187 (414)
T ss_pred CCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc----hhHHHHHHHHhcC-
Confidence 48899999999999764311 11 2345556666655543 2335677664433332 6899999999986
Q ss_pred CCcE-EEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeee
Q 018731 181 PDIM-VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLG 257 (351)
Q Consensus 181 p~i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG 257 (351)
+++. +.+.|++..++++.++.|.+||+|+|+++++++|+ +-+++.+. .++.+.+++..+.+.+ .||.+-..=+.=
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~--a~idvlIaPv~l 265 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN--AGIDVLIAPVWL 265 (414)
T ss_pred CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh--CCCCEEEeeeec
Confidence 6765 45667888889999999999999999999999988 44555432 4689999999999999 899743332222
Q ss_pred CCCCHHHHHHHHHHHHhCCCC----EEeeecccCCCCCcc-c-ccCCCCHHHHHHHHHHH-HhcCcc
Q 018731 258 LGESDDDLKEAMADLRSIDVD----ILTLGQYLQPTPLHL-T-VKEYVTPEKFDFWKAYG-ESIGFR 317 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~lg~d----~i~i~~~l~PTp~~~-~-~~~~v~~~e~~~~~~~~-~~~G~~ 317 (351)
.|-+++|+.+.+.|++++|+- .+.+..|. |-.+.. + .....+-.+|.+|.+.. .+.|.+
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyi-pyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYI-PYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CCcChHHHHHHHHHHHHhCCCCCCCCcceEEee-eecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 378899999999999999853 24453343 522221 1 23456778888866555 447776
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-13 Score=119.80 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=116.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC---CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~---~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+++..|++||.+|.||..+... ....++++++.+.++.. ...++.|.|+||+|. +. .++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPl-l~----~~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPT-LQ----AGLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCccc-Cc----HhHHHHHHHHHHC
Confidence 457778899999999999987431 11235667777776654 224788999999973 33 3488999999885
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcC-CCeeecchhchHHHHhhhcCCCCCHH-HHHHHHHHHHHhCCCCeEEEeeee-
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYE-QSLEVLKHAKLSKKGLITKSSIML- 256 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG-~~~i~~~ies~~~~~~~~r~~~~~~~-~~l~~i~~~~~~~~Gi~v~~~~Iv- 256 (351)
++.+.+.|++. +++.++.++++| ++.+.+++++.++.+..+++....+. +.+++++.+++ .|+.+...+++
T Consensus 90 --g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~--~gi~~~i~~~v~ 163 (191)
T TIGR02495 90 --GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLR--SGIPFELRTTVH 163 (191)
T ss_pred --CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHH--cCCCEEEEEEEe
Confidence 66666656553 678899999999 69999999876664433332334565 89999999999 88875555443
Q ss_pred -eCCCCHHHHHHHHHHHHhCC
Q 018731 257 -GLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 257 -GlgEt~e~~~~~l~~l~~lg 276 (351)
|... .+++.+.++++.+.+
T Consensus 164 ~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 164 RGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred CCCCC-HHHHHHHHHHhccCC
Confidence 5433 678999999999888
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-13 Score=126.41 Aligned_cols=196 Identities=18% Similarity=0.252 Sum_probs=149.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCC-CCCCCchhHHHHHHHHHhCC-CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~-~~~~~~eei~~~~~~~~~~G-~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
....+.+|+.||.+|.||....... ..+.+.++..+....+.+.| ...+.++||+|. +. .++.++++.+++.
T Consensus 19 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPl-l~----~d~~ei~~~~~~~- 92 (347)
T COG0535 19 LVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPL-LR----PDLLEIVEYARKK- 92 (347)
T ss_pred cEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcc-cc----ccHHHHHHHHhhc-
Confidence 4455568999999999999887653 34567777777888888898 888999999973 33 5788999888876
Q ss_pred CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC
Q 018731 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (351)
Q Consensus 181 p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg 259 (351)
+++.+...|++..++++.++.++++|++.+.+++++.+. .++.+++....++..+++++.+++ .|+.+...+.+. +
T Consensus 93 ~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~--~g~~~~~~~~v~-~ 169 (347)
T COG0535 93 GGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKE--AGILVVINTTVT-K 169 (347)
T ss_pred CCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHH--cCCeeeEEEEEe-c
Confidence 567776666664568899999999999999999999775 456676556799999999999998 898744444442 7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCccc-ccCCCCHHHHHHHH
Q 018731 260 ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLT-VKEYVTPEKFDFWK 308 (351)
Q Consensus 260 Et~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~-~~~~v~~~e~~~~~ 308 (351)
.+.+++.+.++.+.++|++.+.+. .+.|+..... .....++++.+...
T Consensus 170 ~n~~~l~~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~ 218 (347)
T COG0535 170 INYDELPEIADLAAELGVDELNVF-PLIPVGRGEENLELDLTPEEEELLL 218 (347)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEE-EEeecccccccccccCCHHHHHHHH
Confidence 889999999999999999877775 3446444321 23456666555433
|
|
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=127.21 Aligned_cols=175 Identities=10% Similarity=0.103 Sum_probs=126.6
Q ss_pred EeeccCCCCCCcCcccCCCCC------CCCCCchhHHHHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 107 MLLGDTCTRGCRFCAVKTSRN------PAPPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~------~~~~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
...|..||.+|.||....... ...++.+.+.+.++.+.+. +...|.|+||+|...+ .+.+.++++.+++
T Consensus 9 ~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~---~~~~~~~~~~~~~ 85 (370)
T PRK13758 9 KPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAG---LEFFEELMELQRK 85 (370)
T ss_pred ecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCC---hHHHHHHHHHHHH
Confidence 344689999999999865221 1124555566666655443 4457899999974222 2456788888887
Q ss_pred hC-CCc--EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcC---CCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 179 QK-PDI--MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD---PRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 179 ~~-p~i--~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~---~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
.. .++ .+.+.|++.+++++.++.|++.|+ .|.+++++.++.++..|. ...+++.++++++.+++ .|+.+..
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~--~~~~~~i 162 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKK--YKVEFNI 162 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHH--hCCCceE
Confidence 53 233 346677887789999999999987 899999998776655541 24689999999999999 8887777
Q ss_pred eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 253 ~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
.+++. ..+.+++.+.++++.++|++.+.+...+.|
T Consensus 163 ~~~v~-~~n~~~l~~i~~~~~~~g~~~~~~~~~~~p 197 (370)
T PRK13758 163 LCVVT-SNTARHVNKIYKYFKEKDFKFLQFINCLDP 197 (370)
T ss_pred EEEec-cccccCHHHHHHHHHHcCCCeEeeeeccCc
Confidence 66665 567788999999999999998776433445
|
|
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-12 Score=120.93 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=137.2
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHH--------HhCCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHH
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAI--------ASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~--------~~~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik 177 (351)
+..+.||+.+|.||.-........++..|+.+.+..+ ...+++.|+|+| |+| |.+ .+.+.++++.++
T Consensus 125 iSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP--Lln--~d~v~~~i~~l~ 200 (368)
T PRK14456 125 ISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP--LLN--TDNVFEAVLTLS 200 (368)
T ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc--ccC--HHHHHHHHHHHh
Confidence 3569999999999987653223346777877665332 235789999999 997 432 356889999888
Q ss_pred HhCC--Cc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc---CCCCCHHHHHHHHHH-HHHhCC
Q 018731 178 KQKP--DI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR---DPRAGYEQSLEVLKH-AKLSKK 246 (351)
Q Consensus 178 ~~~p--~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r---~~~~~~~~~l~~i~~-~~~~~~ 246 (351)
+... ++ +|++.|++ + . +.++.|.++|++ .+++++++.++ .++.+. .++.++++++++++. +.+ .
T Consensus 201 ~~~~~~~is~r~ItisT~G-l-~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~--~ 275 (368)
T PRK14456 201 TRKYRFSISQRKITISTVG-I-T-PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASK--T 275 (368)
T ss_pred ccccccCcCcCeeEEECCC-C-h-HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHh--c
Confidence 6411 12 45565554 2 3 457999999997 89999999866 454442 125689999999985 555 6
Q ss_pred CCeEE--EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 247 GLITK--SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 247 Gi~v~--~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
|..+. .-+|-|+.++.+++.+++++++++.+. +.+-+| .|.+.. .....+++++..+.+.++..|+.-.
T Consensus 276 g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~-VnlIpy-n~~~~~--~~~~ps~e~i~~F~~~L~~~Gi~vt 346 (368)
T PRK14456 276 GEPVTLVYMLLEGINDSPEDARKLIRFASRFFCK-INLIDY-NSIVNI--KFEPVCSSTRERFRDRLLDAGLQVT 346 (368)
T ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCe-eEEeee-ccCCCC--CCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 76644 455668899999999999999998542 333223 232111 1234677888899999999888643
|
|
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-12 Score=119.16 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=138.9
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---C------C--CcEEEEec-cCCCCCCCCcHHHHHHHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---W------G--VDYIVLTS-VDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~------G--~~~I~ltg-g~~~~l~~~~~~~~~~li~~ 175 (351)
..+.||+.+|.||+.+.......++++|+.+.+..+.. . | ++.|+|.| |+| |.+ .+.+.+.++.
T Consensus 126 SsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEP--LlN--~d~V~~~i~~ 201 (373)
T PRK14459 126 SSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEP--LAN--YKRVVAAVRR 201 (373)
T ss_pred EecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcc--hhh--HHHHHHHHHH
Confidence 46899999999999665332345788898877765432 1 2 67899999 987 432 5788898988
Q ss_pred HHHh---CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHHH-Hh
Q 018731 176 MKKQ---KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAK-LS 244 (351)
Q Consensus 176 ik~~---~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~~-~~ 244 (351)
+++. ..++ ++++.|.+. ...++.|.+.|++ .+.+++.+.++ .++.+.+ ++++.++.+++++... +
T Consensus 202 l~~~~~~g~gis~r~ITvST~Gl---~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~- 277 (373)
T PRK14459 202 ITAPAPEGLGISARNVTVSTVGL---VPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADA- 277 (373)
T ss_pred HhCcccccCCccCCEEEEECcCc---hhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHH-
Confidence 8862 1244 666655543 3578889998887 78899999876 4555441 2478999999976664 5
Q ss_pred CCCCeEEE--eeeeeCCCCHHHHHHHHHHHHhCC--CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 245 KKGLITKS--SIMLGLGESDDDLKEAMADLRSID--VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 245 ~~Gi~v~~--~~IvGlgEt~e~~~~~l~~l~~lg--~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.|..+.. -+|-|+.++.++..+..++++.++ .-.|.+-+| .|++.. .....+.+.+..+.+.++..|+.-
T Consensus 278 -~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpy-Np~~~~--~y~~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 278 -TGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPL-NPTPGS--KWTASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred -hCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEcc-CCCCCC--CCcCCCHHHHHHHHHHHHHCCCeE
Confidence 6777555 445588999999999999999884 334555433 353322 123456678888889998888753
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-12 Score=120.87 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=130.7
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC-CCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~-~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
...++.+|.||+.+|+||.......... ...+++.+.++.+.. .|+++|.|+||+|..+++ ..+.++++.+++.
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i- 188 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEI- 188 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhc-
Confidence 4567889999999999999754322111 125677777777764 589999999999844442 4588888888874
Q ss_pred CC---cEEEEeecCC---CCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE--E
Q 018731 181 PD---IMVECLTSDF---RGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK--S 252 (351)
Q Consensus 181 p~---i~i~~~~~~~---~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~--~ 252 (351)
+. +++...++.. .++++.++.|+++|+..+.++.....+ ...++..++++.+++ +|+.+. +
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~---------Ei~~~~~~ai~~L~~--aGi~v~~qt 257 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCN---------EITEEFAEAMKKLRT--VNVTLLNQS 257 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChH---------hCCHHHHHHHHHHHH--cCCEEEeec
Confidence 33 3444433332 358999999999999887665433221 123677899999999 899754 4
Q ss_pred eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHH
Q 018731 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 253 ~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~ 311 (351)
.++-|..++.+++.++.+.+.++|+.-..++ .+.|+... ..-.++.++..++-+.+
T Consensus 258 vLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~-~~~~~~g~--~~f~~~~~~~~~i~~~l 313 (331)
T TIGR00238 258 VLLRGVNDRAQILAKLSIALFKVGIIPYYLH-YLDKVQGA--KHFLVPDAEAAQIVKEL 313 (331)
T ss_pred ceECCcCCCHHHHHHHHHHHhhcCeecCeec-CcCCCCCc--ccccCCHHHHHHHHHHH
Confidence 4555778899999999999999998776664 34565443 12346666666554443
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=120.66 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=129.8
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK- 180 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~- 180 (351)
+..+.++.+|+.+|+||........ ...+.+++.+.++.+.+ .|++.|+||||+|-..++ ..+.++++.+....
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQIPH 173 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhCCC
Confidence 3556799999999999986543211 13345667776776664 489999999999743332 34777777766531
Q ss_pred -CCcEEEE----eecCCCCCHHHHHHHHHcCCCeee-cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 181 -PDIMVEC----LTSDFRGDLRAVETLVHSGLDVFA-HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 181 -p~i~i~~----~~~~~~~~~e~l~~L~~aG~~~i~-~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
..+++.. ..|+ .++++.++.|+++|+..+. ++++..++.+ ++..++++.+++ .|+.+....
T Consensus 174 ~~~iri~tr~~~~~p~-rit~el~~~L~~~~~~~~~~~h~dh~~Ei~----------d~~~~ai~~L~~--~Gi~v~~qt 240 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPD-RITSGLCDLLANSRLQTVLVVHINHANEID----------AEVADALAKLRN--AGITLLNQS 240 (321)
T ss_pred CcEEEEecCcceeeHH-HhhHHHHHHHHhcCCcEEEEeeCCChHhCc----------HHHHHHHHHHHH--cCCEEEecc
Confidence 1234432 2233 4588999999999988764 4666554432 346679999999 999865544
Q ss_pred ee--eCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 255 ML--GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 255 Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
++ |+.++.+++.++++.+.++|+.-..++ .+.|++.. ..-.+++++..++-+.++
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~-~~~p~gg~--~~f~v~~~~~~~i~~~l~ 297 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLH-LLDKVQGA--AHFDVDDERARALMAELL 297 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCccc-ccCCCCCc--ccccCCHHHHHHHHHHHH
Confidence 44 668999999999999999999877774 45676643 124577777776555443
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-12 Score=119.42 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=134.4
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHH----h--CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA----S--WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~----~--~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
..+.||+.+|.||..+.......++++|+.+++.... . .|+..|+++| |+| +.+ .+.+.++++.+++..
T Consensus 114 SsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEP--Lln--~~~v~~~l~~l~~~~ 189 (356)
T PRK14455 114 TTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEP--FDN--YDNVMDFLRIINDDK 189 (356)
T ss_pred ECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccc--cCC--HHHHHHHHHHHhccc
Confidence 4578999999999988654344578888887666432 1 3578899988 886 332 578899999988631
Q ss_pred CCc-----EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 181 PDI-----MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 181 p~i-----~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
++ ++.+.|++.. +.+..+.+.++. .+.+++.+.++ .++.+. .++++.++++++++.+.+. .|..+.
T Consensus 190 -g~~~s~r~itvsT~G~~---~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~-~~~~v~ 264 (356)
T PRK14455 190 -GLAIGARHITVSTSGIA---PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEK-TNRRVT 264 (356)
T ss_pred -CcccCCCceEEEecCch---HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh-cCCeEE
Confidence 33 5555555432 356667777654 25578888866 454322 1256889999999977541 344544
Q ss_pred E--eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 252 S--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 252 ~--~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
. -+|-|++++.+++.++.++++.++. .|.+-+| .|++.. .....+++.+..+.+.+...|+...
T Consensus 265 iey~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPy-np~~~~--ky~~ps~e~l~~f~~~L~~~gi~v~ 330 (356)
T PRK14455 265 FEYILLGGVNDQVEHAEELADLLKGIKC-HVNLIPV-NPVPER--DYVRTPKEDIFAFEDTLKKNGVNCT 330 (356)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEec-CcCCCC--CCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 4 5555779999999999999999874 4555333 343322 1234567788888888988888643
|
|
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-12 Score=116.64 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=145.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhH-HHHHHH-HH-hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEP-ENTAKA-IA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei-~~~~~~-~~-~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~ 178 (351)
...+...+.|||++|.||..+..... .....+++ .+++.. .. ..+...|.+|||+|. +. .+.+.++++..|+
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~-~q---~e~~~~~~~~ake 110 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPT-LQ---AEFALDLLRAAKE 110 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcch-hh---HHHHHHHHHHHHH
Confidence 36677789999999999998874421 12222222 122222 22 237889999999974 32 5889999999999
Q ss_pred hCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEeee
Q 018731 179 QKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSSIM 255 (351)
Q Consensus 179 ~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~I 255 (351)
. ++.+.+-|+++ .+++.++.|.+. +|.+.+.+...++ .++.+. +.+.+.+++.++.+.+ .|+. +.+-+|
T Consensus 111 ~--Gl~~~l~TnG~-~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~--~g~~ve~r~lvi 182 (260)
T COG1180 111 R--GLHVALDTNGF-LPPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLAD--LGVHVEIRTLVI 182 (260)
T ss_pred C--CCcEEEEcCCC-CCHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHc--CCCeEEEEEEEE
Confidence 7 77776666666 488888899988 9999999888755 577776 5566999999999999 7886 455666
Q ss_pred eeCCCCHHHHHHHHHHHHhCCCC-EEeeecccCCCCCcc-cccCCCCHHHHHHHHHHHHhcCcceeccCcc
Q 018731 256 LGLGESDDDLKEAMADLRSIDVD-ILTLGQYLQPTPLHL-TVKEYVTPEKFDFWKAYGESIGFRYVASGPL 324 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~d-~i~i~~~l~PTp~~~-~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~~ 324 (351)
-|++++.+++.+.++++.+++.. -+.+.+| .|.+. ........++++++.+.+.+.|.++++.++.
T Consensus 183 Pg~~d~~e~i~~i~~~i~~~~~~~p~~~l~f---hp~~~~~~~p~~~~~~le~~~~~a~~~~~~~v~~~~~ 250 (260)
T COG1180 183 PGYNDDEEEIRELAEFIADLGPEIPIHLLRF---HPDYKLKDLPPTPVETLEEAKKLAKEEGLKFVYIGNV 250 (260)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCcccEEEecc---ccCccccccCCCcHHHHHHhHhhhHHHHHHhHhhhcc
Confidence 77789999999999999986543 2344222 33332 1223445567777888888777777666543
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-12 Score=124.28 Aligned_cols=171 Identities=11% Similarity=0.130 Sum_probs=125.5
Q ss_pred eccCCCCCCcCcccCCCC-----CC-CCCCchhHHHHHHHHHh-CCCcE--EEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 109 LGDTCTRGCRFCAVKTSR-----NP-APPDPMEPENTAKAIAS-WGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~-----~~-~~~~~eei~~~~~~~~~-~G~~~--I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
++..||.+|.||...... .+ ..++.+.+.+.++++.+ .+... +.++||||. +.. ...+.++++.+++.
T Consensus 20 ~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPl-L~~--~~~~~~~~~~~~~~ 96 (412)
T PRK13745 20 VGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETL-MRP--LSFYKKALELQKKY 96 (412)
T ss_pred cCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccC-CCc--HHHHHHHHHHHHHH
Confidence 457999999999985421 11 23677778888887765 35555 556899974 331 23455666655543
Q ss_pred C--CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcC---CCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 180 K--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD---PRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 180 ~--p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~---~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
. .++.+.+.|++.+++++.++.|+++|+ .|.+++++.++.++..|. ...++++++++++.+++ .|+.+.+..
T Consensus 97 ~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~--~gi~~~i~~ 173 (412)
T PRK13745 97 ARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKK--HGVEWNAMA 173 (412)
T ss_pred cCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHH--cCCCEEEEE
Confidence 2 245666778888889999999999997 899999998766655541 13599999999999999 898876655
Q ss_pred eeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
++. .++.+++.+.+++++++|++.+.+.+++
T Consensus 174 vv~-~~n~~~~~e~~~~~~~lg~~~~~~~p~~ 204 (412)
T PRK13745 174 VVN-DFNADYPLDFYHFFKELDCHYIQFAPIV 204 (412)
T ss_pred EEc-CCccccHHHHHHHHHHcCCCeEEEEecc
Confidence 543 7888889999999999999998885444
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=117.24 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=135.6
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHH---hCCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh---C
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA---SWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ---K 180 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~---~~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~---~ 180 (351)
..+.||+.+|.||..........++.+|+.+.+..+. ..++..|+|+| |+| +.+ .+.+.++++.+++. .
T Consensus 106 ssq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEP--Lln--~d~v~~~i~~l~~~~~~~ 181 (343)
T PRK14469 106 STQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEP--LLN--YENVIKSIKILNHKKMKN 181 (343)
T ss_pred EecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChh--hhh--HHHHHHHHHHHhchhccc
Confidence 4679999999999865432223466788877664432 24688999999 997 332 46678888887642 1
Q ss_pred CCc-EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEE--Ee
Q 018731 181 PDI-MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITK--SS 253 (351)
Q Consensus 181 p~i-~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~--~~ 253 (351)
.+. .+++.|++ ..+.++.|.+.|++ .+.+++++.++ .++.+. .++++.++++++++.+.+. .+..+. .-
T Consensus 182 ~g~~~itisTnG---~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~-~~~~v~i~yv 257 (343)
T PRK14469 182 IGIRRITISTVG---IPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKK-TGNRVTIEYI 257 (343)
T ss_pred CCCCeEEEECCC---ChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHH-hCCeEEEEEE
Confidence 122 56664544 36788999999999 69999999876 454432 1257999999999876541 344444 44
Q ss_pred eeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 254 IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 254 ~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
+|-|+.++.+++.+..++++.+++. |.+-+| .|.+. .....+.+++.++.+.++..|+..
T Consensus 258 lI~g~NDs~ed~~~La~llk~~~~~-VnLIpy-np~~~---~~~~ps~e~l~~f~~~l~~~gi~v 317 (343)
T PRK14469 258 LIKGFNDEIEDAKKLAELLKGLKVF-VNLIPV-NPTVP---GLEKPSRERIERFKEILLKNGIEA 317 (343)
T ss_pred EECCCCCCHHHHHHHHHHHhccCcE-EEEEec-CCCCc---cCCCCCHHHHHHHHHHHHHCCCeE
Confidence 5667899999999999999988753 444333 24222 124456788888988888888753
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=116.66 Aligned_cols=206 Identities=18% Similarity=0.198 Sum_probs=138.6
Q ss_pred eeeEEEEeeccCCCC-CCcCcccC------CCCCCC----------CCCc-hhHHHHHHHHHhCCCc----EEEEeccCC
Q 018731 101 IATATIMLLGDTCTR-GCRFCAVK------TSRNPA----------PPDP-MEPENTAKAIASWGVD----YIVLTSVDR 158 (351)
Q Consensus 101 ~~~~~~i~~s~gC~~-~C~FC~~~------~~~~~~----------~~~~-eei~~~~~~~~~~G~~----~I~ltgg~~ 158 (351)
+...+.|.--.+||+ +|.||... .+.... ..+| .++..-++++...|-. ++.|.||+-
T Consensus 65 vaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTF 144 (515)
T COG1243 65 VAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTF 144 (515)
T ss_pred ceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccc
Confidence 445666667889997 99999765 111110 1122 3555666677777743 567788886
Q ss_pred CCCCCCcHHHHHHHH-HHHH----------------Hh-CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-
Q 018731 159 DDIPDGGSGHFARTV-KAMK----------------KQ-KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR- 219 (351)
Q Consensus 159 ~~l~~~~~~~~~~li-~~ik----------------~~-~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~- 219 (351)
+.++..-.++|...+ +++- .. .-+++|+. .||.. +++.++.|++.|+++|-+|+||+.+
T Consensus 145 ta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiET-RPD~~-~ee~ld~mlkyG~TrVELGVQSiyd~ 222 (515)
T COG1243 145 TALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIET-RPDYI-DEEHLDQMLKYGVTRVELGVQSIYDD 222 (515)
T ss_pred cCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEec-Ccccc-CHHHHHHHHhcCCcEEEEeeeeHHHH
Confidence 656532234444332 2222 00 01233433 46775 8999999999999999999999755
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCC---CCEEeeeccc-CC-CCCcc
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSID---VDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg---~d~i~i~~~l-~P-Tp~~~ 293 (351)
..+... ++|+++++.++-+.+++ +|++++..+|.|+ |-+.|-=.++++.+-+.+ +|.+-+++.| .. |+++.
T Consensus 223 Vl~~~~-RGHtvedv~~a~rLlKd--~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~ 299 (515)
T COG1243 223 VLERTK-RGHTVEDVVEATRLLKD--AGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYE 299 (515)
T ss_pred HHHHhc-CCccHHHHHHHHHHHHh--cCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHH
Confidence 554443 59999999999999999 9999999999999 888776667777776666 9999998766 23 77762
Q ss_pred --c--ccCCCCHHHHHHHHHHH
Q 018731 294 --T--VKEYVTPEKFDFWKAYG 311 (351)
Q Consensus 294 --~--~~~~v~~~e~~~~~~~~ 311 (351)
. .-...+.++..++...+
T Consensus 300 mwk~G~Ykpy~~EEaVeli~~i 321 (515)
T COG1243 300 MWKRGLYKPYTTEEAVELIVEI 321 (515)
T ss_pred HHHcCCCCCCCHHHHHHHHHHH
Confidence 1 12345666666544433
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=116.68 Aligned_cols=200 Identities=14% Similarity=0.134 Sum_probs=134.1
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhC------CCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW------GVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+..+.||+.+|.||..........++++|+.+.+..+... .++.|+|+| |+| +.+ .+.+.+.++.+...
T Consensus 97 vSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEP--lln--~~~v~~~i~~l~~~ 172 (343)
T PRK14468 97 VSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEP--LLN--YENVLKAARIMLHP 172 (343)
T ss_pred EEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcc--ccC--HHHHHHHHHHhccc
Confidence 4568999999999986553223457788988777654332 256899998 887 332 56777777766422
Q ss_pred -CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 180 -KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 180 -~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
..++ .+++.|++ ..+.++.|.++|++ .+.+++.+.++ .++.+. +++.+.++.+++++...+. .+..+.
T Consensus 173 ~g~~l~~r~itvST~G---~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~-~~~~V~ 248 (343)
T PRK14468 173 QALAMSPRRVTLSTVG---IPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAV-TGRRVT 248 (343)
T ss_pred ccccccCceEEEECCC---ChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHh-cCCeEE
Confidence 1121 35554544 34678889998887 58889988876 454443 1245889999999755442 455544
Q ss_pred --EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 252 --SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 252 --~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.-+|=|+.++.|++.+..++++++.+ .+.+-+| .|.... .....+.+++..+++.++..|+.-
T Consensus 249 ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 249 LEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPF-NPWEGS--PFQSSPRAQILAFADVLERRGVPV 313 (343)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 45555889999999999999999864 3444333 242221 234567888888998888888753
|
|
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=116.61 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=133.4
Q ss_pred eccCCCCCCcCcccCCCCC-------CCCCCchhHHHHHHHHHh---C---C--------------CcEEEEe-ccCCCC
Q 018731 109 LGDTCTRGCRFCAVKTSRN-------PAPPDPMEPENTAKAIAS---W---G--------------VDYIVLT-SVDRDD 160 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~-------~~~~~~eei~~~~~~~~~---~---G--------------~~~I~lt-gg~~~~ 160 (351)
...||+.+|.||..+.... ....+++++.+.+..... . | .+++.|+ +|+|.
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPl- 142 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPT- 142 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCcccc-
Confidence 3567999999998875432 112456777665544311 1 3 3468887 67763
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHH
Q 018731 161 IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEV 237 (351)
Q Consensus 161 l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~ 237 (351)
+. +++.++++.+++. ++.+.+.|++. .++.++.| +++++.+.+++++.++ .++.++++ ..+++.+++.
T Consensus 143 L~----p~l~eli~~~k~~--Gi~~~L~TNG~--~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~ 213 (322)
T PRK13762 143 LY----PYLPELIEEFHKR--GFTTFLVTNGT--RPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILET 213 (322)
T ss_pred ch----hhHHHHHHHHHHc--CCCEEEECCCC--CHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHH
Confidence 42 5799999999987 66666666654 36888888 7899999999999865 56666522 4589999999
Q ss_pred HHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc---ccccCCCCHHHHHHHHHHHHh-
Q 018731 238 LKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH---LTVKEYVTPEKFDFWKAYGES- 313 (351)
Q Consensus 238 i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~---~~~~~~v~~~e~~~~~~~~~~- 313 (351)
++.+++ .|..+...+.+=-|.|..+..+.++++++++++.+.+..|. |.... ......++.+++..+.+.+.+
T Consensus 214 L~~l~~--~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~-~~G~~k~~l~~~~~p~~eev~~~~~~l~~~ 290 (322)
T PRK13762 214 LELLPS--KKTRTVIRITLVKGYNMHDPEGFAKLIERANPDFVEVKAYM-HVGYSRNRLTRDNMPSHEEVREFAKELAEY 290 (322)
T ss_pred HHHHHh--CCCCEEEEEEEECCcCccHHHHHHHHHHHcCCCEEEEECCe-ECCCccccccccCCcCHHHHHHHHHHHHHh
Confidence 999998 77765444333224555555588999999999999885453 42111 112345788888887776655
Q ss_pred cCcce
Q 018731 314 IGFRY 318 (351)
Q Consensus 314 ~G~~~ 318 (351)
.|+..
T Consensus 291 ~~~~i 295 (322)
T PRK13762 291 TGYEI 295 (322)
T ss_pred cCCeE
Confidence 47653
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-11 Score=116.39 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=135.1
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHH---HH-hC--C---CcEEEEec-cCCCCCCCCcHHHHHHHHHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKA---IA-SW--G---VDYIVLTS-VDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~---~~-~~--G---~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik 177 (351)
..+.||+.+|.||..........++++|+.+++.. .. .. | ++.|+|+| |+| +.+ .+.+.+.++.++
T Consensus 107 Ssq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP--Lln--~~~v~~~l~~l~ 182 (354)
T PRK14460 107 SCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP--LLN--LDEVMRSLRTLN 182 (354)
T ss_pred eCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc--cCC--HHHHHHHHHHHh
Confidence 45889999999998654322345788898877742 22 22 3 67888988 886 332 567888888887
Q ss_pred HhCCCc-----EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHH-HHhCCCC
Q 018731 178 KQKPDI-----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHA-KLSKKGL 248 (351)
Q Consensus 178 ~~~p~i-----~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~-~~~~~Gi 248 (351)
+.. ++ ++.+.|++. .+.++.|.++|+..+.+++++.++ .++.+.+. ..+.++.+++++.. .+ .|-
T Consensus 183 ~~~-Gl~~~~r~itvsT~G~---~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~--~~~ 256 (354)
T PRK14460 183 NEK-GLNFSPRRITVSTCGI---EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLK--TRE 256 (354)
T ss_pred hhh-ccCCCCCeEEEECCCC---hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHh--cCC
Confidence 531 22 466655543 678899999999889999999876 45444311 35888899888754 33 344
Q ss_pred e--EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 249 I--TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 249 ~--v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
. +..-+|-|++++.+++.+++++++.++. .|.+-+| .|.+.. .....+++++..+.++++..|+.-
T Consensus 257 ~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpy-n~~~g~--~y~~p~~e~v~~f~~~l~~~Gi~v 324 (354)
T PRK14460 257 RVTFEYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVY-NPAEGL--PYSAPTEERILAFEKYLWSKGITA 324 (354)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 4 4556666889999999999999999875 3444333 243221 124567888899999988888753
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-11 Score=114.45 Aligned_cols=199 Identities=18% Similarity=0.148 Sum_probs=130.7
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHH-hCCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhCCCc-
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA-SWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDI- 183 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~-~~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~p~i- 183 (351)
+..+.||+.+|.||.-........++++|+.+.+..+. ..+++.|+|+| |+| +.+ ++.+.+.++.+++. .++
T Consensus 107 vSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEP--l~n--~~~vi~~l~~l~~~-~gl~ 181 (349)
T PRK14463 107 ISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEP--LAN--LDNVIPALQILTDP-DGLQ 181 (349)
T ss_pred EEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcc--hhc--HHHHHHHHHHhhcc-cccC
Confidence 45799999999999755422234467888887776654 35789999999 886 332 56777777777642 133
Q ss_pred ----EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEEE--ee
Q 018731 184 ----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITKS--SI 254 (351)
Q Consensus 184 ----~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~ 254 (351)
++.+.|++. .+ .+..+.+...-.+.+++++.++ .++.+- .++.+.++.+++++..... .+-.+.. -+
T Consensus 182 ~s~r~itVsTnGl--~~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~-~~~~v~ieyvL 257 (349)
T PRK14463 182 FSTRKVTVSTSGL--VP-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLP-GRRKITIEYVM 257 (349)
T ss_pred cCCceEEEECCCc--hH-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh-cCCeEEEEEEE
Confidence 565555543 33 4444554432245578888865 554431 1357889999988776541 3344544 55
Q ss_pred eeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
|-|++++.+++.++.+++++++. .+.+-+| .|.+.. .....+.+++..+++.++..|+.-
T Consensus 258 I~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~~~~--~~~~ps~e~i~~f~~~L~~~gi~v 317 (349)
T PRK14463 258 IRGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEHEGC--DFRSPTQEAIDRFHKYLLDKHVTV 317 (349)
T ss_pred eCCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCCCCC--CCCCCCHHHHHHHHHHHHHCCceE
Confidence 55779999999999999999876 4555333 343221 234567788999999998888753
|
|
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-11 Score=113.47 Aligned_cols=198 Identities=14% Similarity=0.203 Sum_probs=135.4
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+.||+.+|.||..........++++|+.+++..+.. .++..|+|+| |+| +.+ .+.+.+.++.+++. .+
T Consensus 105 vSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEP--lln--~~~v~~~i~~l~~~-~~ 179 (345)
T PRK14457 105 VSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEP--LLN--IDEVLAAIRCLNQD-LG 179 (345)
T ss_pred EeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcc--ccC--HHHHHHHHHHHhcc-cC
Confidence 345789999999998765332234778888877766543 3578999999 987 332 56777888887653 24
Q ss_pred c---EEEEeecCCCCCHHHHHHHHHcCC------C-eeecchhchHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCCC
Q 018731 183 I---MVECLTSDFRGDLRAVETLVHSGL------D-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKGL 248 (351)
Q Consensus 183 i---~i~~~~~~~~~~~e~l~~L~~aG~------~-~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~-~~~~~~Gi 248 (351)
+ ++++.|.+ ..+.++.|.+.++ + .+.+++.+.++ .++.+.+ +++..++.+++++. +.+ .|-
T Consensus 180 i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~--~gr 254 (345)
T PRK14457 180 IGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAI--TGR 254 (345)
T ss_pred CccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHH--hCC
Confidence 4 56665543 3456888888762 3 36778888765 4544431 24678888877755 455 564
Q ss_pred --eEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 249 --ITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 249 --~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.+..-+|-|+.++.|++.++.++++.+++ .|.+-+| .|.+.. .....+.+++..+.+.++..|+.-
T Consensus 255 ~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~Gi~v 322 (345)
T PRK14457 255 RVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPY-NPIDEV--EFQRPSPKRIQAFQRVLEQRGVAV 322 (345)
T ss_pred EEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 45666777999999999999999999875 4555333 343322 124567888889999888888853
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=114.64 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=134.8
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh------CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh-
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS------WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ- 179 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~- 179 (351)
..+.||+.+|.||+.........++.+|+.+.+..+.. .++..|+|.| |+| +.+ .+.+.++++.+++.
T Consensus 110 SsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEP--Lln--~d~v~~~l~~l~~~~ 185 (355)
T TIGR00048 110 SSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEP--LLN--LNEVVKAMEIMNDDF 185 (355)
T ss_pred ecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCch--hhC--HHHHHHHHHHhhccc
Confidence 45789999999999765432334677888776554321 2477899998 886 332 57788888888753
Q ss_pred CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHH-HHhCCCCeEE
Q 018731 180 KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHA-KLSKKGLITK 251 (351)
Q Consensus 180 ~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~-~~~~~Gi~v~ 251 (351)
..++ ++.+.|++. .+.++.|.+.+++ .+.+++.+.++ .++.+.+ +++++++.+++++.. ++ .|.++.
T Consensus 186 g~~i~~~~itisT~G~---~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~--~g~~Vt 260 (355)
T TIGR00048 186 GLGISKRRITISTSGV---VPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNK--TGRRVT 260 (355)
T ss_pred ccCcCCCeEEEECCCc---hHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHH--hCCEEE
Confidence 2234 566656553 2678888888887 46788888765 5544321 245789999888754 55 566644
Q ss_pred --EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 252 --SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 252 --~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
.-+|-|+.++.+++.+..++++.+++ .|.+-+| .|.+.. .....+++++.++.+.++..|+.-.
T Consensus 261 ieyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~gi~v~ 326 (355)
T TIGR00048 261 FEYVLLDGVNDQVEHAEELAELLKGTKC-KVNLIPW-NPFPEA--DYERPSNEQIDRFAKTLMSYGFTVT 326 (355)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCC-ceEEEec-ccCCCC--CCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45556889999999999999999875 3444233 343332 1234677889899988888888643
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-11 Score=114.15 Aligned_cols=200 Identities=17% Similarity=0.147 Sum_probs=130.2
Q ss_pred CCcCcccCCCC-CCCCCCchhHHHHHHHHHh-C--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ec
Q 018731 116 GCRFCAVKTSR-NPAPPDPMEPENTAKAIAS-W--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TS 190 (351)
Q Consensus 116 ~C~FC~~~~~~-~~~~~~~eei~~~~~~~~~-~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~ 190 (351)
.|.||...... .....+++++.+++..... . ....|.++||+++.+. +.+.++++.+++. ++++.+. |+
T Consensus 38 ~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----~~l~eLl~~lk~~--gi~taI~~Tn 111 (404)
T TIGR03278 38 GCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----PELEELTKGLSDL--GLPIHLGYTS 111 (404)
T ss_pred CCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----HHHHHHHHHHHhC--CCCEEEeCCC
Confidence 66666433211 1122456788777776443 2 4578999988765444 7899999999986 4554442 55
Q ss_pred C-CCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE--EEeeeeeCCCCHHHHH
Q 018731 191 D-FRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT--KSSIMLGLGESDDDLK 266 (351)
Q Consensus 191 ~-~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v--~~~~IvGlgEt~e~~~ 266 (351)
+ +..+++.++.++++|+|.+++++.+.++ .++.+++ ....+++++.++.+.+ . +.+ ..-++-|+.++.+. .
T Consensus 112 G~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G-~~~a~~ILe~L~~L~e--~-~~v~~~ivlIPGiND~eel-~ 186 (404)
T TIGR03278 112 GKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK-DPTPEASLQCLRRFCE--S-CEVHAASVIIPGVNDGDVL-W 186 (404)
T ss_pred CcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhC-CCCHHHHHHHHHHHHh--c-CCEEEEEEEeCCccCcHHH-H
Confidence 4 3458999999999999999999999876 5665552 2355899999999987 3 444 44445566555554 6
Q ss_pred HHHHHHHhCCCCEEeeecccCCCC-------Ccccc--cCCCCHHHHHHH-HHHHHhcCcceeccCcccccc
Q 018731 267 EAMADLRSIDVDILTLGQYLQPTP-------LHLTV--KEYVTPEKFDFW-KAYGESIGFRYVASGPLVRSS 328 (351)
Q Consensus 267 ~~l~~l~~lg~d~i~i~~~l~PTp-------~~~~~--~~~v~~~e~~~~-~~~~~~~G~~~~~~~~~~r~~ 328 (351)
++++++.++++..+.+.+| +++. +.... ....+.+++..+ ++..++.|++.. ..||+..+
T Consensus 187 ~ti~~L~~lg~~~V~L~~y-~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~-g~~~~~~~ 256 (404)
T TIGR03278 187 KTCADLESWGAKALILMRF-ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVT-GTPLCDPE 256 (404)
T ss_pred HHHHHHHHCCCCEEEEEec-ccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCccc-CCcccccC
Confidence 9999999999998888644 3321 11111 123455666665 666666665533 33555544
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-11 Score=112.25 Aligned_cols=197 Identities=11% Similarity=0.062 Sum_probs=134.4
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh---
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ--- 179 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~--- 179 (351)
+..+.||+.+|.||..........+++.|+.+.+..+.+ ..++.|+|+| |+|. +. .+.+.++++.++..
T Consensus 101 vSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPl-lN---~d~v~~~i~~l~~~~~~ 176 (336)
T PRK14470 101 LSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPF-LN---YDEVLRAAYALCDPAGA 176 (336)
T ss_pred EeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccc-cC---HHHHHHHHHHHhCcccc
Confidence 456889999999999876332234566777666654433 2578999999 9973 32 46788888888753
Q ss_pred -CCCcEEEEeecCCCCCHHHHHHHHHcCC-CeeecchhchHH-HH-hhhcC-CCCCHHHHHHHHHHHHHhCCCCe--EEE
Q 018731 180 -KPDIMVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQ-RIVRD-PRAGYEQSLEVLKHAKLSKKGLI--TKS 252 (351)
Q Consensus 180 -~p~i~i~~~~~~~~~~~e~l~~L~~aG~-~~i~~~ies~~~-~~-~~~r~-~~~~~~~~l~~i~~~~~~~~Gi~--v~~ 252 (351)
..+.+|++.|++. . +.++.+.+.|. +.+.+++.+.++ .+ ++++. ++.+.++.+++++...+ .+-. +..
T Consensus 177 ~~~~~~ItVsTnG~--~-p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~--~~rri~iey 251 (336)
T PRK14470 177 RIDGRRISISTAGV--V-PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAA--LRGRVTLEY 251 (336)
T ss_pred ccCCCceEEEecCC--h-HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHH--hCCCeEEEE
Confidence 1245677766653 3 45666667665 779999999766 45 44431 14689999999999987 4444 445
Q ss_pred eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHH--hcCcc
Q 018731 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE--SIGFR 317 (351)
Q Consensus 253 ~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~--~~G~~ 317 (351)
-+|-|+.++++++.+..++++.+.+. +.+-+| .|.+. .....+.+++..+.+.++ ..|+.
T Consensus 252 vLI~GvNDseeda~~La~llk~l~~~-vnlI~~-N~~~~---~~~~p~~~~i~~f~~~l~~~~~g~~ 313 (336)
T PRK14470 252 VMISGVNVGEEDAAALGRLLAGIPVR-LNPIAV-NDATG---RYRPPDEDEWNAFRDALARELPGTP 313 (336)
T ss_pred EEEecccCCHHHHHHHHHHHhcCCCe-EEEecc-CCCCC---CccCCCHHHHHHHHHHHHHccCCeE
Confidence 56678899999999999999988663 343234 34222 124567788888888884 55664
|
|
| >KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=117.96 Aligned_cols=185 Identities=19% Similarity=0.292 Sum_probs=122.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCCCCc-hhHHHHHHHHHhCCCcEEEEeccCCCCCCC-CcHHHHHHHHHHHHHhC
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPDP-MEPENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQK 180 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~~~~-eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~~~~~~~~li~~ik~~~ 180 (351)
..-++.+..||-..|+||--...++....++ +++.+.++...+.|+.+|++++-+...+.. -+ ..+..++..+.+..
T Consensus 187 lieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig-~slp~ll~klv~~i 265 (547)
T KOG4355|consen 187 LIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIG-KSLPKLLWKLVEVI 265 (547)
T ss_pred ceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhh-hhhHHHHHHHHHhc
Confidence 5677888999999999998876666655555 788888988889999999998876443321 11 34566666666666
Q ss_pred CC---cEEEEeecCCCC-C-HHHHHHHHHcCCCeeec-chhchHH-----HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 018731 181 PD---IMVECLTSDFRG-D-LRAVETLVHSGLDVFAH-NIETVKR-----LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (351)
Q Consensus 181 p~---i~i~~~~~~~~~-~-~e~l~~L~~aG~~~i~~-~ies~~~-----~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (351)
|+ +.+....|-+.+ . ++....|+--.+-.+.+ -++|.++ |.+-++ ..+++.+.+. +.+.-|||.
T Consensus 266 Pe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc--~~dfk~Vvd~---LterVPgi~ 340 (547)
T KOG4355|consen 266 PESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYC--NFDFKIVVDF---LTERVPGIT 340 (547)
T ss_pred chhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHh--hhhHHHHHHH---HHhhCCCcE
Confidence 63 222222222211 1 12222222222222222 3566443 333232 3345555554 444449999
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL 293 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~ 293 (351)
+.+++|.|| |||+|||.++++++++.++..+.+++|. +| ||.+.
T Consensus 341 IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAk 387 (547)
T KOG4355|consen 341 IATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAK 387 (547)
T ss_pred EeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHh
Confidence 999999999 9999999999999999999999998887 66 88763
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=109.72 Aligned_cols=197 Identities=14% Similarity=0.155 Sum_probs=131.2
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhCCCc--
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDI-- 183 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~p~i-- 183 (351)
..+.||+.+|.||.-........++.+||.+.+..+.. .++..|+|+| |+| +. +.+.+.+.++.++... ++
T Consensus 108 SsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEP--L~--N~d~vi~al~~l~~~~-g~~~ 182 (345)
T PRK14466 108 SSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEP--LD--NLDEVLKALEILTAPY-GYGW 182 (345)
T ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcC--cc--cHHHHHHHHHHHhhcc-ccCc
Confidence 34669999999999665432344788899888876643 3689999999 997 43 2567777777776532 22
Q ss_pred ---EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCe--EEEeee
Q 018731 184 ---MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLI--TKSSIM 255 (351)
Q Consensus 184 ---~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~I 255 (351)
+|.+.|++. .+. +..+.+.+--.+.+++.+.++ .++.+-. +.++.++.+++++...+. .|=. +..-+|
T Consensus 183 s~r~ItVsT~G~--~~~-i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~-~~rri~~Ey~Li 258 (345)
T PRK14466 183 SPKRITVSTVGL--KKG-LKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFS-KQRRVSFEYIVF 258 (345)
T ss_pred CCceEEEEcCCC--chH-HHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHh-hCCEEEEEEEEe
Confidence 566666552 332 344443333456778887655 4533331 246789999999886442 2333 444555
Q ss_pred eeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
=|++++.|++.+..++++.++. .|.+-+| .|.|.. ....++.+.++.+.+.++..|+.
T Consensus 259 ~gvND~~e~a~~L~~ll~~~~~-~VNLIp~-Np~~~~--~~~~~s~~~~~~F~~~L~~~gi~ 316 (345)
T PRK14466 259 KGLNDSLKHAKELVKLLRGIDC-RVNLIRF-HAIPGV--DLEGSDMARMEAFRDYLTSHGVF 316 (345)
T ss_pred CCCCCCHHHHHHHHHHHcCCCc-eEEEEec-CCCCCC--CCcCCCHHHHHHHHHHHHHCCCc
Confidence 6789999999999999998874 5666444 354332 23457788899999999988874
|
|
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-10 Score=112.54 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=120.2
Q ss_pred eEEEEeeccCCCCCCcCcccCCCC--CCCCCCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAPPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~--~~~~~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
-...+.+|++|+.+|+||...... ....++.+++.+.++.+.+ .+++.|.||||+|-.+++ +.+..+++.+++.
T Consensus 108 ~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L~~I 184 (417)
T TIGR03820 108 DRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTELRAI 184 (417)
T ss_pred CEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHHhhc
Confidence 456777899999999999876522 1233556888888888776 489999999999855553 4566667888874
Q ss_pred CCCcE-EEEee--c---CCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE-
Q 018731 180 KPDIM-VECLT--S---DFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS- 252 (351)
Q Consensus 180 ~p~i~-i~~~~--~---~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~- 252 (351)
|.+. |.+.+ + ...++++.++.|++++...|.+.++..++ ..++..++++.+++ +|+.+..
T Consensus 185 -phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~E----------it~~a~~Al~~L~~--aGI~l~nQ 251 (417)
T TIGR03820 185 -PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPRE----------ITASSKKALAKLAD--AGIPLGNQ 251 (417)
T ss_pred -CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHh----------ChHHHHHHHHHHHH--cCCEEEee
Confidence 5553 33322 2 23468999999999987777665554332 35788899999999 9998544
Q ss_pred -eeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 253 -SIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 253 -~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.++=|.+++.+.+.+..+.+.++|+.--.+
T Consensus 252 sVLLkGVND~~~~l~~L~~~L~~~gV~PYYl 282 (417)
T TIGR03820 252 SVLLAGVNDCPRIMKKLVHKLVANRVRPYYL 282 (417)
T ss_pred ceEECCcCCCHHHHHHHHHHHHHCCCeecee
Confidence 455577999999999999999999754334
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-10 Score=109.31 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=132.7
Q ss_pred EEeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh----CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 106 IMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 106 ~i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~----~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
-+..+.||+.+|.||..+.......++.+|+.+++..+.. .++..|+|.| |+| +.+ .+.+.++++.+++..
T Consensus 102 cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEP--L~N--~d~v~~~l~~l~~~~ 177 (348)
T PRK14467 102 CVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEP--LAN--YENVRKAVQIMTSPW 177 (348)
T ss_pred EEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChh--hcC--HHHHHHHHHHHcChh
Confidence 3467999999999999875432345778898877765443 3578999999 987 432 678888888887521
Q ss_pred CCc-----EEEEeecCCCCCHHHHHHHHHc----CCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHHH-HhCCC
Q 018731 181 PDI-----MVECLTSDFRGDLRAVETLVHS----GLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAK-LSKKG 247 (351)
Q Consensus 181 p~i-----~i~~~~~~~~~~~e~l~~L~~a----G~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~~-~~~~G 247 (351)
++ ++++.|.+.. +.++.+... .++ +.+++.+.++ .++.+.+. ....++.+++++... + .|
T Consensus 178 -gl~~~~r~itvsT~G~~---~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~--~g 250 (348)
T PRK14467 178 -GLDLSKRRITISTSGII---HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLP--PG 250 (348)
T ss_pred -ccCcCCCcEEEECCCCh---hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHh--cC
Confidence 34 5666666532 334444442 343 4578888765 56544411 347777777776543 3 45
Q ss_pred Ce--EEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 248 LI--TKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 248 i~--v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
-+ +..-+|-|+.++.+++.++.++++.++ ...|.+-+| .|++.. .....++++++++.+.++..|+.-
T Consensus 251 ~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPy-np~~~~--~~~~ps~e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 251 RRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPF-NPDPEL--PYERPELERVYKFQKILWDNGIST 321 (348)
T ss_pred CeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 55 445556688999999999999999885 344555333 354443 234567788888888888888753
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-10 Score=102.74 Aligned_cols=198 Identities=16% Similarity=0.237 Sum_probs=129.8
Q ss_pred EEeeccCCCC--------CCcCcccCCCCC---CCCCCc-hhHHHHHHHHHh-CC-CcE-EEEeccCCCCCCCCcHHHHH
Q 018731 106 IMLLGDTCTR--------GCRFCAVKTSRN---PAPPDP-MEPENTAKAIAS-WG-VDY-IVLTSVDRDDIPDGGSGHFA 170 (351)
Q Consensus 106 ~i~~s~gC~~--------~C~FC~~~~~~~---~~~~~~-eei~~~~~~~~~-~G-~~~-I~ltgg~~~~l~~~~~~~~~ 170 (351)
.+-.+-.||+ +|+||+...+.. ....+. +++.+.++.+.+ ++ .++ ++|+..+.+ +.. .+.+.
T Consensus 27 ~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNT-yAp--vevLr 103 (312)
T COG1242 27 TLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNT-YAP--VEVLR 103 (312)
T ss_pred eccCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccc-cCc--HHHHH
Confidence 3445666774 699998765421 111222 455566654433 22 334 478777654 321 45666
Q ss_pred HHHHHHHHhCCC-cEEEEee-cCCCCCHHHHHHHHHcCCC---eeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHh
Q 018731 171 RTVKAMKKQKPD-IMVECLT-SDFRGDLRAVETLVHSGLD---VFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 171 ~li~~ik~~~p~-i~i~~~~-~~~~~~~e~l~~L~~aG~~---~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
+..+..-.. ++ +.+.+.| ||-+ .++.++.|.+..-. ++-+|++|..+. .+.++ ++|++..+.++++++++
T Consensus 104 e~ye~aL~~-~~VVGLsIgTRPDCl-pd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iN-RgHd~~~y~dav~r~rk- 179 (312)
T COG1242 104 EMYEQALSE-AGVVGLSIGTRPDCL-PDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRIN-RGHDFACYVDAVKRLRK- 179 (312)
T ss_pred HHHHHHhCc-CCeeEEeecCCCCCC-cHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHh-cccchHHHHHHHHHHHH-
Confidence 666655543 44 3555433 5653 78888888887433 134699998763 34443 49999999999999999
Q ss_pred CCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc---CCCCCccc----ccCCCCHHHHHHH-HHHHH
Q 018731 245 KKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL---QPTPLHLT----VKEYVTPEKFDFW-KAYGE 312 (351)
Q Consensus 245 ~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l---~PTp~~~~----~~~~v~~~e~~~~-~~~~~ 312 (351)
.||+|++.+|+|| ||+.+++.+|++.+.+++++-|-+. .| .-|++... .-...+.+++..+ .+.++
T Consensus 180 -rgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH-~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le 254 (312)
T COG1242 180 -RGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH-PLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLE 254 (312)
T ss_pred -cCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE-EEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999998884 33 22777521 1234566666553 34444
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=110.42 Aligned_cols=190 Identities=11% Similarity=0.102 Sum_probs=131.8
Q ss_pred ccC-CCCCCcCcccCCCCCCC-CCCchhHHHHHHHHHhC-CCcE--EEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCc
Q 018731 110 GDT-CTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASW-GVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDI 183 (351)
Q Consensus 110 s~g-C~~~C~FC~~~~~~~~~-~~~~eei~~~~~~~~~~-G~~~--I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i 183 (351)
+.. ||.+|.||......... .++.+..++.++.+.+. +.+. |.+.||+|.... ..|.+.+..+.+++ .+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~----~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAG----LDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccch----HHHHHHHHHHHHHHhcCC
Confidence 444 99999999998754322 36666677777766553 4465 677899984332 45555555544432 254
Q ss_pred EEE--EeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhc---CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 184 MVE--CLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR---DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 184 ~i~--~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r---~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
++. ..|++.+++++.++.+++.|+ .|.++++...++++..| +.+.+++.++++++.+++ .++.+.+.+++.
T Consensus 90 ~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~--~~v~~~~~~vv~- 165 (378)
T COG0641 90 TISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA--HGVDFNTLTVVN- 165 (378)
T ss_pred eeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHH--cCCcEEEEEEEc-
Confidence 544 678888899999999999999 89999999877654444 224699999999999999 888877776643
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc-ccccCCCCHHHHHHH
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH-LTVKEYVTPEKFDFW 307 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~-~~~~~~v~~~e~~~~ 307 (351)
.++.+...+.++++.+.|...+.+.+.+.+.+.. ......++++++.++
T Consensus 166 ~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~f 215 (378)
T COG0641 166 RQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQF 215 (378)
T ss_pred hhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHH
Confidence 7899999999999999997776663332111110 001245666666553
|
|
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=110.48 Aligned_cols=171 Identities=19% Similarity=0.261 Sum_probs=124.5
Q ss_pred cccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCC-CC-----CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 018731 91 GECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRN-PA-----PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG 164 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~-~~-----~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~ 164 (351)
+.|..|+ ...+.+|.-||.+|-||.++..+. .. +......++++.++..++...+-+|||+| +-
T Consensus 22 ~~C~~G~------KlVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdP--l~-- 91 (353)
T COG2108 22 RLCVLGG------KLVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDP--LL-- 91 (353)
T ss_pred HHHhcCC------ceEEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCCh--HH--
Confidence 5677774 447778999999999999986442 11 11112334455555566777888999997 32
Q ss_pred cHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 018731 165 GSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 165 ~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~ 243 (351)
..++..++++.+|+.+ -+++++.+|++...+++.++.|.+||+|.|-++.... .....+.+++.++.+++
T Consensus 92 ~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~---------~~~~~e~~i~~l~~A~~ 162 (353)
T COG2108 92 EIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRP---------GSKSSEKYIENLKIAKK 162 (353)
T ss_pred HHHHHHHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCc---------cccccHHHHHHHHHHHH
Confidence 1678889999999876 4588999998877899999999999999996654200 12356788999999998
Q ss_pred hCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 244 SKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 244 ~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.|+.+..-+. .+-.-++.+.+.++++.+.+.+++++.
T Consensus 163 --~g~dvG~EiP-aipg~e~~i~e~~~~~~~~~~~FlNiN 199 (353)
T COG2108 163 --YGMDVGVEIP-AIPGEEEAILEFAKALDENGLDFLNIN 199 (353)
T ss_pred --hCccceeecC-CCcchHHHHHHHHHHHHhcccceeeee
Confidence 8887655442 232235678899999999999999984
|
|
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-10 Score=106.91 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=128.0
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCC--CcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh-CCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWG--VDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ-KPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G--~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~-~p~ 182 (351)
+..+.||+.+|.||..+.......++.+|+.+++..+...| ++.|+|+| |+| +.+ ..+.+.++.+++. ..+
T Consensus 104 vssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEP--Lln---~~v~~~i~~l~~~~~~~ 178 (347)
T PRK14453 104 ISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEA--LAN---PELFDALKILTDPNLFG 178 (347)
T ss_pred EecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCc--cCC---HHHHHHHHHHhcccccC
Confidence 34688999999999987643334578899988887665555 88999999 997 433 3577888777763 223
Q ss_pred c---EEEEeecCCCCCHHHHHHHHHcC-CCeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCC--eEEEe
Q 018731 183 I---MVECLTSDFRGDLRAVETLVHSG-LDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGL--ITKSS 253 (351)
Q Consensus 183 i---~i~~~~~~~~~~~e~l~~L~~aG-~~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~~~~~~Gi--~v~~~ 253 (351)
+ ++.+.|.+.. . .++.+.+.. --.+.+++.+.++ .++.+.+ +....++.+++++...+. .|. .+..-
T Consensus 179 ~~~r~itVsT~G~~-~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~-~~~~V~iry~ 254 (347)
T PRK14453 179 LSQRRITISTIGII-P--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRH-TGRKVYIAYI 254 (347)
T ss_pred CCCCcEEEECCCCc-h--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHh-cCCcEEEEEE
Confidence 2 3666565543 2 233333321 1224446666544 4433321 245677777766554331 344 45667
Q ss_pred eeeeCCCCHHHHHHHHHHHHhCC----CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 254 IMLGLGESDDDLKEAMADLRSID----VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 254 ~IvGlgEt~e~~~~~l~~l~~lg----~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
+|-|+.++.+++.+.+++++.++ +..|.+-+| .|++.........+.+++..+.++++..|+.
T Consensus 255 LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPy-n~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~ 321 (347)
T PRK14453 255 MLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPY-NSTDKTPFKFQSSSAGQIKQFCSTLKSAGIS 321 (347)
T ss_pred eECCCCCCHHHHHHHHHHHhhccccCCcceEEEecC-CCCCCCCccCCCCCHHHHHHHHHHHHHCCCc
Confidence 77799999999999999999874 344555333 3433221123457778899999999999875
|
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-10 Score=104.25 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=116.5
Q ss_pred CchhHHHHHHHHH---hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 132 DPMEPENTAKAIA---SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 132 ~~eei~~~~~~~~---~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
+.+++.+.++... ..+...|.|+||+|. +. .+.+.++++.+++. ++.+.+.|+++. ..+.++.+.+. +|
T Consensus 107 t~eel~~~i~~~~~~~~~~~~~V~~sGGEPl-l~---~~~l~~l~~~~k~~--g~~~~i~TnG~~-~~~~~~~ll~~-~d 178 (295)
T TIGR02494 107 TVEEVMRVVLRDSIFYRNSGGGVTLSGGEPL-LQ---PEFALALLQACHER--GIHTAVETSGFT-PWETIEKVLPY-VD 178 (295)
T ss_pred cHHHHHHHHHHHHHhcccCCCcEEeeCcchh-ch---HHHHHHHHHHHHHc--CCcEeeeCCCCC-CHHHHHHHHhh-CC
Confidence 3455555544322 224568999999974 33 24457999999986 566666666654 55677777764 78
Q ss_pred eeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeCCCCHHHHHHHHHHHHhCC--CCEEeee
Q 018731 209 VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGLGESDDDLKEAMADLRSID--VDILTLG 283 (351)
Q Consensus 209 ~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGlgEt~e~~~~~l~~l~~lg--~d~i~i~ 283 (351)
.+.+++++.++ .++.++ +.+++..++.++.+.+ .|+.+.. .++.|+.++.+++.+.++++.+++ ++.+.+.
T Consensus 179 ~~~isl~~~~~~~~~~~~--g~~~~~vl~~i~~l~~--~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~ 254 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVT--GVDNEPILENLEALAA--AGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLL 254 (295)
T ss_pred EEEEeeccCChHHHHHHh--CCChHHHHHHHHHHHh--CCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEec
Confidence 88888888755 566666 4588999999999999 7776444 446677788999999999999998 6777775
Q ss_pred cccCCCCCc----------ccccCCCCHHHHHHHHHHHHhcC
Q 018731 284 QYLQPTPLH----------LTVKEYVTPEKFDFWKAYGESIG 315 (351)
Q Consensus 284 ~~l~PTp~~----------~~~~~~v~~~e~~~~~~~~~~~G 315 (351)
+| .|.+.. +...+.++.+++.++++.+++.|
T Consensus 255 ~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 255 PY-HRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred CC-CchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 44 352211 11123467778888777766544
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.7e-10 Score=104.81 Aligned_cols=199 Identities=15% Similarity=0.112 Sum_probs=132.4
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhC------CCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW------GVDYIVLT-SVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~I~lt-gg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+....||+.+|.||..+.......++++|+.+++..+... ....|++. ||+| |.+ .+.+.++++.+++.
T Consensus 114 vSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP--L~N--~d~v~~~l~~l~~~ 189 (356)
T PRK14462 114 VSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP--LDN--LDNVSKAIKIFSEN 189 (356)
T ss_pred eeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc--ccC--HHHHHHHHHHhcCc
Confidence 3457899999999987654323457888988877644331 24567776 7776 443 67888999999874
Q ss_pred -CCCc---EEEEeecCCCCCHHHHHHHHHcCC-CeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHH-HHhCCCCe-
Q 018731 180 -KPDI---MVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHA-KLSKKGLI- 249 (351)
Q Consensus 180 -~p~i---~i~~~~~~~~~~~e~l~~L~~aG~-~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~-~~~~~Gi~- 249 (351)
.-++ ++++.|.++. +.++.|.+.++ -.+.+++-+.++ .++.+.+ ..+..++.+++++.. .+ .|-.
T Consensus 190 ~Gl~~~~r~itVsTsG~~---~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~--~~~~i 264 (356)
T PRK14462 190 DGLAISPRRQTISTSGLA---SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPID--QRKRV 264 (356)
T ss_pred cCCCcCCCceEEECCCCh---HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHH--hCCeE
Confidence 2222 4566565543 56777887755 235556777665 4544431 134668899988744 45 4555
Q ss_pred -EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 250 -TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 250 -v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
+.--+|-|+.++.|++.++.++++.++. .|.+-+| .|.+.. .....+++++..++++++..|+.-
T Consensus 265 ~ieyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-n~~~~~--~~~~ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 265 MFEYLVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILF-NPHEGS--KFERPSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 4556677889999999999999999874 5555433 343332 224567888999999988888753
|
|
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-09 Score=101.76 Aligned_cols=199 Identities=12% Similarity=0.107 Sum_probs=127.2
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh----------CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----------WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~----------~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~i 176 (351)
..+-||+.+|.||..+.......++.+|+.+++..+.. .+++.|++.| |+| |.+ .+.+.+.++.+
T Consensus 108 SsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEP--L~N--~d~v~~al~~l 183 (372)
T PRK11194 108 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP--LLN--LNNVVPAMEIM 183 (372)
T ss_pred ecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcc--ccC--HHHHHHHHHHH
Confidence 34699999999998775332344777888777654332 1267777766 776 432 56777888888
Q ss_pred HHhC-CCc---EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCC---
Q 018731 177 KKQK-PDI---MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKK--- 246 (351)
Q Consensus 177 k~~~-p~i---~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~~~~~~--- 246 (351)
.+.. -++ ++++.|.+. .+.++.|.+..--.+.+++-+.++ .++.+.+. .+..++.+++++...+. .
T Consensus 184 ~~~~g~~i~~r~itVsTsG~---~~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~-~~~~ 259 (372)
T PRK11194 184 LDDFGFGLSKRRVTLSTSGV---VPALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEK-SNAN 259 (372)
T ss_pred hhhhccCcCCCeEEEECCCC---chHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHh-cccC
Confidence 7532 123 666656553 245666766542245556666554 55444411 34567777765554331 3
Q ss_pred --CCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 247 --GLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 247 --Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.+.+..-+|-|+.++.+++.++.++++.++. .|.+-+| .|.+.. .....+++++..+.+.++..|+.-
T Consensus 260 ~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPY-N~~~~~--~~~~ps~e~v~~f~~~L~~~Gi~v 329 (372)
T PRK11194 260 QGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPFPGA--PYGRSSNSRIDRFSKVLMEYGFTV 329 (372)
T ss_pred CCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 2556777888999999999999999999864 5555333 343322 124567788888888888888864
|
|
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-09 Score=100.89 Aligned_cols=198 Identities=15% Similarity=0.148 Sum_probs=129.3
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-C--CCcE-EEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-W--GVDY-IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~--G~~~-I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+.||+.+|.||..........++.+|+.+++..... . .+.. |+++||+| +.+ .+.+.++++.+++.. +
T Consensus 105 vSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEP--Lln--~d~v~~~l~~l~~~~-g 179 (342)
T PRK14454 105 VSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEP--LDN--YENVMKFLKIVNSPY-G 179 (342)
T ss_pred EEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchh--hcC--HHHHHHHHHHHhccc-c
Confidence 457899999999998765332345788999887765543 1 3445 55788987 432 577889999998631 3
Q ss_pred c-----EEEEeecCCCCCHHHHHHHHHcCC-CeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCCCe--E
Q 018731 183 I-----MVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKGLI--T 250 (351)
Q Consensus 183 i-----~i~~~~~~~~~~~e~l~~L~~aG~-~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~-~~~~~~Gi~--v 250 (351)
+ ++.+.|.+. .+ .+..+.+.+. ..+.+++.+.++ .++.+.+ .....++.+++++. +.+ .|-+ +
T Consensus 180 i~~~~r~itvsTsG~--~p-~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~--~~~rv~i 254 (342)
T PRK14454 180 LNIGQRHITLSTCGI--VP-KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINK--TNRRITF 254 (342)
T ss_pred cCcCCCceEEECcCC--hh-HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHH--hCCEEEE
Confidence 4 566656553 23 3566766542 226677777765 4544441 13466777776654 344 5555 4
Q ss_pred EEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 251 KSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 251 ~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
..-+|-|+.++.+++.++.++++.+.. .+.+-+| .|++.. .....+++++..+.++++..|+.-
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPy-n~~~~~--~~~~ps~e~l~~f~~~l~~~gi~v 318 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPV-NEVKEN--GFKKSSKEKIKKFKNILKKNGIET 318 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEec-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 455677889999999999999998743 4554333 343222 224567888999999998888754
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-09 Score=94.31 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=132.3
Q ss_pred CCCchhHHHHHHHHH---hCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 130 PPDPMEPENTAKAIA---SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 130 ~~~~eei~~~~~~~~---~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
..+++++.+.+..-. +.+-..|+|+||+|. +. .+.+.++++.+++. ++++.+-|+++ .+.+.++.+...
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPl-lq---~~fl~~l~~~~k~~--gi~~~leTnG~-~~~~~~~~l~~~- 89 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVL-MQ---AEFATRFLQRLRLW--GVSCAIETAGD-APASKLLPLAKL- 89 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHH-cC---HHHHHHHHHHHHHc--CCCEEEECCCC-CCHHHHHHHHHh-
Confidence 367888877766432 235568999999974 32 45678999999986 67666556655 478888888876
Q ss_pred CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC--eEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 207 LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL--ITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 207 ~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi--~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+|.+.+.+...++ .|+.+. +.+.+.+++.++.+.+ .|. .+.+.+|-|+.++.|++.++++++++++++.+.+-
T Consensus 90 ~D~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~--~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~ll 165 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVS--EGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLL 165 (213)
T ss_pred cCEEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHh--CCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 9999998888765 577776 6789999999999998 665 46888899999999999999999999988877664
Q ss_pred cccCCC----------CCcccccCCCCHHHHHHHHHHHHhcCccee
Q 018731 284 QYLQPT----------PLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (351)
Q Consensus 284 ~~l~PT----------p~~~~~~~~v~~~e~~~~~~~~~~~G~~~~ 319 (351)
+| .|. +..+...+..++++++++++++++.|+...
T Consensus 166 py-h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 166 PF-HQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred cC-CccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 44 231 111122345678888889999988888643
|
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-09 Score=98.71 Aligned_cols=168 Identities=18% Similarity=0.302 Sum_probs=121.7
Q ss_pred cc-CCCCCCcCcccCCCCC----CCC-CCchhHHHHHHHHHhC------CCcEEEEec-cCCCCCCCCcHHHHHHHHHHH
Q 018731 110 GD-TCTRGCRFCAVKTSRN----PAP-PDPMEPENTAKAIASW------GVDYIVLTS-VDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 110 s~-gC~~~C~FC~~~~~~~----~~~-~~~eei~~~~~~~~~~------G~~~I~ltg-g~~~~l~~~~~~~~~~li~~i 176 (351)
+- .|+++|.||....... ..+ ..++.+.+..+.+... .++++.|++ |+|+ |. .++.++++++
T Consensus 30 ~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPT-Ly----~~L~elI~~~ 104 (296)
T COG0731 30 SKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPT-LY----PNLGELIEEI 104 (296)
T ss_pred chhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcc-cc----cCHHHHHHHH
Confidence 44 8999999998844221 111 2345677777766654 577888875 6765 43 4799999999
Q ss_pred HHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HH-hhhcCC--CCCHHHHHHHHHHHHHhCCCC-eEE
Q 018731 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDP--RAGYEQSLEVLKHAKLSKKGL-ITK 251 (351)
Q Consensus 177 k~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~-~~~r~~--~~~~~~~l~~i~~~~~~~~Gi-~v~ 251 (351)
++.. ++++-+.|++.+ +++++.|. -+|.+++++++.++ .+ ++.| | +..++++++.++.+++...|- -+.
T Consensus 105 k~~g-~~~tflvTNgsl--pdv~~~L~--~~dql~~sLdA~~~~~~~~InR-P~~~~~~e~ile~L~~~~~~~~~~~vir 178 (296)
T COG0731 105 KKRG-KKTTFLVTNGSL--PDVLEELK--LPDQLYVSLDAPDEKTFRRINR-PHKKDSWEKILEGLEIFRSEYKGRTVIR 178 (296)
T ss_pred HhcC-CceEEEEeCCCh--HHHHHHhc--cCCEEEEEeccCCHHHHHHhcC-CCCcchHHHHHHHHHHhhhcCCCcEEEE
Confidence 9973 255555566542 78888887 48999999999877 44 5555 4 358999999999998831233 356
Q ss_pred EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 252 ~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
+.++=|+..+.|++.+.+++++...+|.|.+..+.+|
T Consensus 179 ~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rp 215 (296)
T COG0731 179 TTLVKGINDDEEELEEYAELLERINPDFVELKTYMRP 215 (296)
T ss_pred EEEeccccCChHHHHHHHHHHHhcCCCeEEEecCccC
Confidence 6666677888888999999999999999999766666
|
|
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-09 Score=99.90 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=128.2
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC--CC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK--PD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~--p~ 182 (351)
+..+.||+.+|.||......-...++++|+.+.+..+.+ ..++.|+|+| |+| +.+ .+.+.+.++.+.+.. +.
T Consensus 100 vSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEP--l~N--~d~vl~ai~~l~~~~~i~~ 175 (344)
T PRK14464 100 VSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEP--AHN--LDNVLEAIDLLGTEGGIGH 175 (344)
T ss_pred EEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcc--cCC--HHHHHHHHHHhhchhcCCC
Confidence 357999999999998765322234677888887776655 4589999999 987 332 466777666665431 12
Q ss_pred cEEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HH-hhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEE--eeee
Q 018731 183 IMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQ-RIVRD-PRAGYEQSLEVLKHAKLSKKGLITKS--SIML 256 (351)
Q Consensus 183 i~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~-~~~r~-~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~Iv 256 (351)
-.+.+.|.+ ..+.+..|.+.++. .+.+++.+.++ .+ +.+.. ++.+.++.+++++...+. .|-.+.. -++=
T Consensus 176 r~itiST~G---~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~-~grri~~EyvLl~ 251 (344)
T PRK14464 176 KNLVFSTVG---DPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARA-TGYPIQYQWTLLE 251 (344)
T ss_pred ceEEEeccc---CchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHH-HCCEEEEEEEEeC
Confidence 234443322 34566777765443 34456676654 34 33321 256899999988877543 4765433 3344
Q ss_pred eCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 257 GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
|++++.+++.+..++++.+.+. +.+-+| .|.+.. ....++.++...+.+.++..|+.-
T Consensus 252 GVNDs~e~a~~L~~~l~~~~~~-vNLIPy-N~v~g~--~~~rp~~~~i~~f~~~L~~~gi~~ 309 (344)
T PRK14464 252 GVNDSDEEMDGIVRLLKGKYAV-MNLIPY-NSVDGD--AYRRPSGERIVAMARYLHRRGVLT 309 (344)
T ss_pred CCCCCHHHHHHHHHHHhccccc-cceecC-CccCCC--CccCCCHHHHHHHHHHHHHCCceE
Confidence 7899999999999999877653 344333 343332 123466788888988888888753
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-08 Score=96.78 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=130.5
Q ss_pred EeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh---CCCcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHhC-C
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK-P 181 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~~-p 181 (351)
+..+.||+.+|.||+-....-...++..|+.+.+..+.. ..+..|+|.| |+| |.+ ++.+.+.++.+++.. .
T Consensus 109 vSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEP--L~N--~d~V~~~~~~l~~~~~~ 184 (342)
T PRK14465 109 ISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEP--MHN--YFNVIRAASILHDPDAF 184 (342)
T ss_pred EEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcc--hhh--HHHHHHHHHHHhChhhh
Confidence 346889999999999866432344677888776655443 3578899988 997 432 577888888776641 1
Q ss_pred C---cEEEEeecCCCCCHHHHHHHHH-cCCCeeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHHH-HhCCCCeEE--
Q 018731 182 D---IMVECLTSDFRGDLRAVETLVH-SGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAK-LSKKGLITK-- 251 (351)
Q Consensus 182 ~---i~i~~~~~~~~~~~e~l~~L~~-aG~~~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~~-~~~~Gi~v~-- 251 (351)
+ -+|++.|++. . +.+..|.+ ..--.+.+++.+.++ .+..+- .+++..++.+++++... + .|-.+.
T Consensus 185 ~~~~r~itvST~G~--~-~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~--~~r~v~ie 259 (342)
T PRK14465 185 NLGAKRITISTSGV--V-NGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRE--LKRRITFE 259 (342)
T ss_pred cCCCCeEEEeCCCc--h-HHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHH--cCCEEEEE
Confidence 2 2666656543 2 34455553 332367788887655 453331 13578899999998654 4 455544
Q ss_pred EeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 252 ~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
.-+|-|+.++.|++.+..++++.++.. +.+-+| .| +. ......+.+++..+.+.++..|+.
T Consensus 260 yvLI~GvNDs~eda~~L~~ll~~l~~k-VnLIPy-N~-~~--~~~~~ps~e~i~~F~~~L~~~Gi~ 320 (342)
T PRK14465 260 YVMIPGVNMGRENANKLVKIARSLDCK-INVIPL-NT-EF--FGWRRPTDDEVAEFIMLLEPAGVP 320 (342)
T ss_pred EEEECCccCCHHHHHHHHHHHhhCCCc-EEEEcc-CC-CC--CCCCCCCHHHHHHHHHHHHHCCCe
Confidence 455668899999999999999998743 444233 23 21 123557788888999988888875
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-09 Score=100.95 Aligned_cols=188 Identities=20% Similarity=0.309 Sum_probs=131.2
Q ss_pred EEEEeeccCCCCC----CcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEec--------cCC--CCCCCCcHHHH
Q 018731 104 ATIMLLGDTCTRG----CRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTS--------VDR--DDIPDGGSGHF 169 (351)
Q Consensus 104 ~~~i~~s~gC~~~----C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltg--------g~~--~~l~~~~~~~~ 169 (351)
..=+.+.+||+.. |+||.-+....+..++++.+.++++++.+.|++++-|.= +++ ...+.-+.+.+
T Consensus 184 i~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPeal 263 (560)
T COG1031 184 ICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEAL 263 (560)
T ss_pred EEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHH
Confidence 3445689999976 999998765223346678999999999999999875521 110 01223346889
Q ss_pred HHHHHHHHHhCCCcE-EEE--eecCCC-----CCHHHHHHHHHcC--CCeeecchhchHHH-HhhhcCCCCCHHHHHHHH
Q 018731 170 ARTVKAMKKQKPDIM-VEC--LTSDFR-----GDLRAVETLVHSG--LDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVL 238 (351)
Q Consensus 170 ~~li~~ik~~~p~i~-i~~--~~~~~~-----~~~e~l~~L~~aG--~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i 238 (351)
.++.+-|+...|++. +++ ..|..+ -+.+.++.+.+.| =|...+|+||+|+. .+.+. -..+.++.++++
T Consensus 264 ekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~AV 342 (560)
T COG1031 264 EKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEAV 342 (560)
T ss_pred HHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHHH
Confidence 999999999888864 332 112111 1357788888886 46678999999884 45443 357999999999
Q ss_pred HHHHHhCC-----CCe---EEEeeeeeC-CCCHHHHHHHHHHHHhC---C--CCEEeeeccc-CC-CCCc
Q 018731 239 KHAKLSKK-----GLI---TKSSIMLGL-GESDDDLKEAMADLRSI---D--VDILTLGQYL-QP-TPLH 292 (351)
Q Consensus 239 ~~~~~~~~-----Gi~---v~~~~IvGl-gEt~e~~~~~l~~l~~l---g--~d~i~i~~~l-~P-Tp~~ 292 (351)
+.+.+... |+. -..+|++|| |||.|.+.-..++|+++ | +..|++-|.+ -| ||+.
T Consensus 343 ~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~ 412 (560)
T COG1031 343 EIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMW 412 (560)
T ss_pred HHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchh
Confidence 99887542 343 377899999 99999999988888874 3 3445554433 36 8876
|
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-08 Score=89.50 Aligned_cols=201 Identities=13% Similarity=0.133 Sum_probs=128.3
Q ss_pred eccCCCCCCcCcccCCCC--C-CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEE
Q 018731 109 LGDTCTRGCRFCAVKTSR--N-PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~--~-~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i 185 (351)
.-.||+++|.||...... + ....+++++.++++.+.+.|++.|-+.||+|+ +. ...+.+.++.+... +.+
T Consensus 124 FFsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt--p~--lp~Ile~l~~~~~~---iPv 196 (335)
T COG1313 124 FFSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT--PH--LPFILEALRYASEN---IPV 196 (335)
T ss_pred EecCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCC--Cc--hHHHHHHHHHHhcC---CCE
Confidence 457999999999876522 1 23467888888888999999999999999974 32 46777777776665 444
Q ss_pred EEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHH
Q 018731 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDD 264 (351)
Q Consensus 186 ~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~ 264 (351)
-..+ ++..++|.++.|-.. +|.+--.+.=+++. -.++.+-+.-++-+.+++..+.+...|+-+..-++.|+-| .-
T Consensus 197 vwNS-nmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghle--cC 272 (335)
T COG1313 197 VWNS-NMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLE--CC 272 (335)
T ss_pred EEec-CCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchh--hc
Confidence 3333 455699999987643 55332233333332 2333312234555666777776633357777777777522 21
Q ss_pred HHHHHHHHHhCCCCE--EeeecccCCCCCc---ccccCCCCHHHHHHHHHHHHhcCcceec
Q 018731 265 LKEAMADLRSIDVDI--LTLGQYLQPTPLH---LTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (351)
Q Consensus 265 ~~~~l~~l~~lg~d~--i~i~~~l~PTp~~---~~~~~~v~~~e~~~~~~~~~~~G~~~~~ 320 (351)
-...++|+.+.-.+. ++++.-.+|+-.+ ......++.+|+++..+++++.||.+..
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCceee
Confidence 456778887765433 3443222563222 2345678999999999999999998653
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-08 Score=89.34 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=91.9
Q ss_pred eeEEEEeeccCCCCCCcCcccCCCC--CC----CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHH
Q 018731 102 ATATIMLLGDTCTRGCRFCAVKTSR--NP----APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 102 ~~~~~i~~s~gC~~~C~FC~~~~~~--~~----~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ 175 (351)
...++.+-+.|||.+|.||...... .. ..++.+++.+.++.+...|++.|+||||+|. +. +.+.++++.
T Consensus 21 G~~~~FvR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPl-l~----~~l~~li~~ 95 (238)
T TIGR03365 21 GQKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPA-LQ----KPLGELIDL 95 (238)
T ss_pred CCeEEEEEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchh-hh----HhHHHHHHH
Confidence 3667777789999999999976521 11 1256678888777766667899999999973 32 578999999
Q ss_pred HHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee
Q 018731 176 MKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (351)
Q Consensus 176 ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I 255 (351)
+++. ++.+.+.|++.. ..+ .+.+ +|.+.+++...+. +....++...++++.+.+ |..+..-++
T Consensus 96 l~~~--g~~v~leTNGtl-~~~---~l~~--~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~---~~~~~vK~V 158 (238)
T TIGR03365 96 GKAK--GYRFALETQGSV-WQD---WFRD--LDDLTLSPKPPSS------GMETDWQALDDCIERLDD---GPQTSLKVV 158 (238)
T ss_pred HHHC--CCCEEEECCCCC-cHH---HHhh--CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh---cCceEEEEE
Confidence 9986 566666666654 333 2333 5677777665433 112357777788887765 466777777
Q ss_pred ee
Q 018731 256 LG 257 (351)
Q Consensus 256 vG 257 (351)
++
T Consensus 159 v~ 160 (238)
T TIGR03365 159 VF 160 (238)
T ss_pred EC
Confidence 76
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-07 Score=86.99 Aligned_cols=199 Identities=13% Similarity=0.135 Sum_probs=126.9
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-----------------CCCcEEEEec-cCCCCCCCCcHHHH
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-----------------WGVDYIVLTS-VDRDDIPDGGSGHF 169 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-----------------~G~~~I~ltg-g~~~~l~~~~~~~~ 169 (351)
...-||+.+|.||+-....-.+.++..||.+.+..+.+ ..++.|+|.| |+| |.+ ++.+
T Consensus 112 SSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP--L~N--ydnV 187 (371)
T PRK14461 112 STQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP--FAN--YDRW 187 (371)
T ss_pred EccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc--hhh--HHHH
Confidence 46889999999998766443455788888777765432 1266777765 665 432 5666
Q ss_pred HHHHHHHHHhC-CCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhhhc--CCCCCHHHHHHHHHHH
Q 018731 170 ARTVKAMKKQK-PDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHA 241 (351)
Q Consensus 170 ~~li~~ik~~~-p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~~r--~~~~~~~~~l~~i~~~ 241 (351)
.+.++.+.... -++ +|++.|.+. .+.++.|.+-+.. .+.+++-+.++ .++.+- .+++..++.+++++..
T Consensus 188 ~~ai~il~d~~g~~is~R~ITVST~Gi---vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y 264 (371)
T PRK14461 188 WQAVERLHDPQGFNLGARSMTVSTVGL---VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDY 264 (371)
T ss_pred HHHHHHhcCccccCcCCCceEEEeecc---hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 66666665421 122 466655542 3567777776543 35667766544 443222 1267999999998877
Q ss_pred HHhCCCCeEEE--eeeeeCCCCHHHHHHHHHHHHhCC-----CCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 242 KLSKKGLITKS--SIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 242 ~~~~~Gi~v~~--~~IvGlgEt~e~~~~~l~~l~~lg-----~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
.+. .|=++.. -+|=|+.++.|+..+..++++.++ .-+|.+-+| .|++.. .....+.+....+.+.++..
T Consensus 265 ~~~-t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~-Np~~~~--~~~~ps~~~i~~F~~~L~~~ 340 (371)
T PRK14461 265 IAK-TRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW-NPVPGT--PLGRSERERVTTFQRILTDY 340 (371)
T ss_pred HHh-hCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHC
Confidence 531 4544433 445577999999999999999872 124555333 454332 12345778888999999888
Q ss_pred Ccc
Q 018731 315 GFR 317 (351)
Q Consensus 315 G~~ 317 (351)
|..
T Consensus 341 gi~ 343 (371)
T PRK14461 341 GIP 343 (371)
T ss_pred Cce
Confidence 875
|
|
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.5e-08 Score=88.03 Aligned_cols=197 Identities=15% Similarity=0.209 Sum_probs=125.3
Q ss_pred eEEEEeec--cCCCCCCcCcccCCCCCCC--C--C---Cch--hHHHHHHHHHh--CCCcEEEEeccCCCCCCCCcHHHH
Q 018731 103 TATIMLLG--DTCTRGCRFCAVKTSRNPA--P--P---DPM--EPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHF 169 (351)
Q Consensus 103 ~~~~i~~s--~gC~~~C~FC~~~~~~~~~--~--~---~~e--ei~~~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~ 169 (351)
+.+++..+ .+|..+|.||.+..+.... . + ... .+.+..+.+.. ...+.|.++-...+.. ..++
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~----~~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRA----LNDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeeccccc----cchh
Confidence 45555555 9999999999987643111 1 1 111 12222333322 2366777754432211 2356
Q ss_pred HHHHHHHH-HhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhh-c--CCCCCHHHHHHHHHHHHHh
Q 018731 170 ARTVKAMK-KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIV-R--DPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 170 ~~li~~ik-~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~-r--~~~~~~~~~l~~i~~~~~~ 244 (351)
..+++.++ ...-.++|.-+..+.. ..+.+...++.|.+.+.+.++.++. .++.+ + +..+++++.++.++++.++
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~-~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~ 183 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVS-LKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEA 183 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhccc-chHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 66677666 3222244431122221 2788899999999999998888765 44433 2 1237899999999999988
Q ss_pred CCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHHHH
Q 018731 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWK 308 (351)
Q Consensus 245 ~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~ 308 (351)
+..-.+.+++|+|+||++.++.+++..+.+.|.. ++++.| .| |.+. ....++.+.|.+..
T Consensus 184 ~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~-v~Lfaf-~P~~gt~me--~r~~~pve~Yrk~q 246 (339)
T COG2516 184 FGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGI-VSLFAF-TPLKGTQME--NRKPPPVERYRKIQ 246 (339)
T ss_pred hccCCcceeEEeccCCchHHHHHHHHHHHhcCce-EEEEEe-ccccccccc--CCCCCcHHHHHHHH
Confidence 7657799999999999999999999999999874 455333 46 4433 45566667776644
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-07 Score=83.95 Aligned_cols=173 Identities=15% Similarity=0.227 Sum_probs=115.8
Q ss_pred eEEEEeeccCCCC----CCcCcccCCCCCCCCCCchhHHHHHHHHHh-C---CCc-EE-EEeccCCCCCCCC--cHHHHH
Q 018731 103 TATIMLLGDTCTR----GCRFCAVKTSRNPAPPDPMEPENTAKAIAS-W---GVD-YI-VLTSVDRDDIPDG--GSGHFA 170 (351)
Q Consensus 103 ~~~~i~~s~gC~~----~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~---G~~-~I-~ltgg~~~~l~~~--~~~~~~ 170 (351)
..+++.-|.||.. +|.+|+++........+.+++.+..+.+.. . +-. -| +||+|.- |.+. ..+.-.
T Consensus 47 ~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSF--LD~~EVP~e~R~ 124 (358)
T COG1244 47 SLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSF--LDPEEVPREARR 124 (358)
T ss_pred eEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEccccc--CChhhCCHHHHH
Confidence 5556666999983 499999987533344556777666665432 2 122 24 5788863 3211 124455
Q ss_pred HHHHHHHHhC--CCcEEEEeecCCCCCHHHHHHHHHc--CCC-eeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHHH
Q 018731 171 RTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHS--GLD-VFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 171 ~li~~ik~~~--p~i~i~~~~~~~~~~~e~l~~L~~a--G~~-~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~~ 243 (351)
.+++.|.+.. -.+-++. .|++. ++|.++.+.+. |.. .|.+|+||.++ .+ ..+. ++.++++++++++.+++
T Consensus 125 ~Il~~is~~~~v~~vvvES-RpE~I-~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~ir~ 201 (358)
T COG1244 125 YILERISENDNVKEVVVES-RPEFI-REERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEIIRN 201 (358)
T ss_pred HHHHHHhhccceeEEEeec-Cchhc-CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHHHH
Confidence 6667777651 1223333 46775 89999999987 544 37899999876 43 3444 58999999999999999
Q ss_pred hCCCCeEEEeeeeeC-----CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 244 SKKGLITKSSIMLGL-----GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 244 ~~~Gi~v~~~~IvGl-----gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.|+.+.+.+++-. .|..+|+..++. ...-+.|.+++.
T Consensus 202 --~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 202 --YGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred --cCCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 9999999998755 345566666666 455678888883
|
|
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.6e-07 Score=83.16 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=110.3
Q ss_pred EEEeeccCCCCCCcCcccCCCCCCC-----CCCchh-HHHHHHH-HHhCCCc--EEEEeccCCCCCCCCcHHHHH-HHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRNPA-----PPDPME-PENTAKA-IASWGVD--YIVLTSVDRDDIPDGGSGHFA-RTVK 174 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~~~-----~~~~ee-i~~~~~~-~~~~G~~--~I~ltgg~~~~l~~~~~~~~~-~li~ 174 (351)
.-++.-.||.+.|.||+........ ....++ +.+.++. +.+.+.+ .|.+++.+.+..+......+. .+++
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ile 110 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILE 110 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHH
Confidence 3456789999999999987533211 123333 5555543 3333443 455555543333421112222 3333
Q ss_pred HHHHhCCCcEEEEeecC--CCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 175 AMKKQKPDIMVECLTSD--FRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 175 ~ik~~~p~i~i~~~~~~--~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
.+.+. +..+.+.|-. ...|-+.+..+++-+.-.|.+++-|.++ +.+.+=....+.++++++++.+.+ +|+.+.
T Consensus 111 i~~~~--~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~e--aGi~~~ 186 (297)
T COG1533 111 ILLKY--GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSE--AGIPVG 186 (297)
T ss_pred HHHHc--CCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHH--CCCeEE
Confidence 33443 4455554432 2235577777777776678888888765 556554224589999999999999 999876
Q ss_pred EeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 252 ~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..+--=+ +.|++++.+.+..+.+.|+..+..+
T Consensus 187 v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~ 219 (297)
T COG1533 187 LFVAPIIPGLNDEELERILEAAAEAGARVVVYG 219 (297)
T ss_pred EEEecccCCCChHHHHHHHHHHHHcCCCeeEee
Confidence 6653333 7788999999999999999987763
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-07 Score=81.52 Aligned_cols=173 Identities=16% Similarity=0.249 Sum_probs=112.6
Q ss_pred eccCCCCCCcCcccCCCCC-C-CCCCchhHHHHHHHHHhC-CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh--CCC-
Q 018731 109 LGDTCTRGCRFCAVKTSRN-P-APPDPMEPENTAKAIASW-GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPD- 182 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~-~-~~~~~eei~~~~~~~~~~-G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~--~p~- 182 (351)
.||.|-++|.||....+.. + .+.+++|+.+..-.+.+. =+..++|++|--. -+|...+.+.++++.++-. +-|
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~-~~DyTmE~mi~var~LRle~~f~GY 138 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIK-NPDYTMEEMIEVARILRLEHKFRGY 138 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecccccc-CcchHHHHHHHHHHHHhhccccCcE
Confidence 6999999999999866542 2 347889988776655543 4677888887521 1332356677777666532 222
Q ss_pred cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHh------------C-CCC
Q 018731 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS------------K-KGL 248 (351)
Q Consensus 183 i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~------------~-~Gi 248 (351)
+++.+ .|+. +++.++..-.. +|++++|+|...+ -.+.+. |..++-++++.+..++.. . +-+
T Consensus 139 IHlK~-IPga--s~~li~eagly-adRvSiNIElp~~~~lk~la-p~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~f 213 (404)
T COG4277 139 IHLKI-IPGA--SPDLIKEAGLY-ADRVSINIELPTDDGLKLLA-PEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEF 213 (404)
T ss_pred EEEEe-cCCC--CHHHHHHHhhh-hheeEEeEecCCcchhhhhC-CCCChHHHHHHHHHHHHHHhhcccchhhhccCccc
Confidence 34443 3432 66666554443 7999999998654 234444 556666776666655530 0 112
Q ss_pred e---EEEeeeeeC-CCCHHHHHHHHHHHH-hCCCCEEeeecccCC
Q 018731 249 I---TKSSIMLGL-GESDDDLKEAMADLR-SIDVDILTLGQYLQP 288 (351)
Q Consensus 249 ~---v~~~~IvGl-gEt~e~~~~~l~~l~-~lg~d~i~i~~~l~P 288 (351)
. -++.+|+|- |||++++...-..+. ..++..|.++.|. |
T Consensus 214 apaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~-P 257 (404)
T COG4277 214 APAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS-P 257 (404)
T ss_pred cCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc-c
Confidence 1 368899999 999999999888875 4788888886554 6
|
|
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=88.17 Aligned_cols=168 Identities=19% Similarity=0.244 Sum_probs=115.1
Q ss_pred EeeccCCCCCCcCcccCCCCC--C--CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRN--P--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~--~--~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~ 182 (351)
+..+..|+.+|.||-...++. + .-+...+++.+++.+...|++.+-|+||++.-. .++.+++..+.. +|+
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-----~di~~i~~g~~~-l~g 88 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-----QDIVPIVAGLSS-LPG 88 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-----ccccchhhhhhc-ccc
Confidence 456999999999999887652 2 124557899999999999999999999997422 244555555554 345
Q ss_pred cE-EEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH-H-hhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeC
Q 018731 183 IM-VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-Q-RIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL 258 (351)
Q Consensus 183 i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~-~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGl 258 (351)
+. +.+ ++++..+...+-.+.++|++.+++++++..+- . ...+ +..+..+...++.+.+ .|.. +.++..+--
T Consensus 89 Lks~~I-Ttng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~r--r~g~v~V~~~iq~a~~--lgy~pvkvn~v~~k 163 (323)
T KOG2876|consen 89 LKSIGI-TTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTR--RKGFVKVWASIQLAIE--LGYNPVKVNCVVMK 163 (323)
T ss_pred hhhhce-eccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhh--hccHHHHHHHHhHHhh--hCCCCcceeeEEEe
Confidence 43 222 34444566788889999999999999998662 3 4454 6789999999999987 5653 444444311
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
|-+.+++.+....-+..++|...+ .|+
T Consensus 164 ~~n~~ev~Dfv~~tr~~p~DVrfI-e~m 190 (323)
T KOG2876|consen 164 GLNEDEVFDFVLLTRMRPLDVRFI-EFM 190 (323)
T ss_pred ccCCCcccceeeecCCCCcceEEE-Eec
Confidence 444455666555556666776555 354
|
|
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-06 Score=83.91 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHH
Q 018731 167 GHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAK 242 (351)
Q Consensus 167 ~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~ 242 (351)
.++.+.++..+.++++ +++.-.+..+..+....+.+.++|++.+++++-|.++ ++ ++++ ....++.++.+++..
T Consensus 94 p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~--n~~A~~~le~L~~f~ 171 (414)
T COG1625 94 PDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMK--NPNAEQLLELLRRFA 171 (414)
T ss_pred cchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence 4778888888887633 5555434445456778888999999999999999876 55 6776 568888999999999
Q ss_pred HhCCCCeEEEeeeeeCCCC-HHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHHHHHHH----HHhc
Q 018731 243 LSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAY----GESI 314 (351)
Q Consensus 243 ~~~~Gi~v~~~~IvGlgEt-~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~~~~~~----~~~~ 314 (351)
+ .++.+.+.+++--|-+ -+++.+|+..|.++|++.+.++. ..| |....+.....+++++++++++ .+++
T Consensus 172 ~--~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~ 248 (414)
T COG1625 172 E--RCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDREL 248 (414)
T ss_pred H--hhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8 8899999998866777 89999999999999999877753 347 6555445567788888776554 4556
Q ss_pred C-cce
Q 018731 315 G-FRY 318 (351)
Q Consensus 315 G-~~~ 318 (351)
| |+-
T Consensus 249 ~~~~V 253 (414)
T COG1625 249 GSIRV 253 (414)
T ss_pred CceEE
Confidence 7 654
|
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-06 Score=79.25 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=112.1
Q ss_pred eeeEEEEeeccCCCCCCcCcccCCCCCC--CCCCchhHHHHHHHHHhC-CCcEEEEeccCCCCCCCCcHHHHHHHHHHHH
Q 018731 101 IATATIMLLGDTCTRGCRFCAVKTSRNP--APPDPMEPENTAKAIASW-GVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 101 ~~~~~~i~~s~gC~~~C~FC~~~~~~~~--~~~~~eei~~~~~~~~~~-G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik 177 (351)
+..+..+..+.+|+..|+||.-...-+. .....+++...++.+++. -+.+|.||||+|-.+++ ..+..+++.++
T Consensus 109 Y~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~---~~L~~ll~~L~ 185 (369)
T COG1509 109 YPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD---KKLEWLLKRLR 185 (369)
T ss_pred cCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCH---HHHHHHHHHHh
Confidence 3467888899999999999986653222 124567787777777664 48899999999866664 67888888888
Q ss_pred HhCCCc---EEEEeecC---CCCCHHHHHHHHHcCCCee-ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 178 KQKPDI---MVECLTSD---FRGDLRAVETLVHSGLDVF-AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 178 ~~~p~i---~i~~~~~~---~~~~~e~l~~L~~aG~~~i-~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
+. |-+ +|..-.|- ...+++..+.|.+.+.... ...++..++ =-.+..++++++++ +|+.+
T Consensus 186 ~I-pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~E----------it~e~~~A~~~L~~--aGv~l 252 (369)
T COG1509 186 AI-PHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNE----------ITPEAREACAKLRD--AGVPL 252 (369)
T ss_pred cC-CceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhh----------cCHHHHHHHHHHHH--cCcee
Confidence 75 332 33321121 2357888888888654322 112222222 22355678888888 99985
Q ss_pred EE--eeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 251 KS--SIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 251 ~~--~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.. -++=|.+++.+-+.+.++.+.++|+.--.+
T Consensus 253 ~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl 286 (369)
T COG1509 253 LNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYL 286 (369)
T ss_pred ecchheecccCCCHHHHHHHHHHHHHcCCcceEE
Confidence 43 345588999999999999999999754333
|
|
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-07 Score=78.83 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=51.0
Q ss_pred EeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i 183 (351)
+..+.+|+.+|.||..+..... ..++.+.+.+.++.+...++..|.|+||+|. +. ...+.+.++++.+++..+ .
T Consensus 9 ~~~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPl-l~-~~~~~l~~i~~~~k~~~~-~ 85 (139)
T PF13353_consen 9 VLFTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPL-LH-ENYDELLEILKYIKEKFP-K 85 (139)
T ss_dssp EEEEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGG-GH-HSHHHHHHHHHHHHHTT--S
T ss_pred EEEcCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCee-ee-ccHhHHHHHHHHHHHhCC-C
Confidence 3348889999999987664421 1233455566667777789999999999973 41 114899999999999875 2
Q ss_pred EEEEeecCC
Q 018731 184 MVECLTSDF 192 (351)
Q Consensus 184 ~i~~~~~~~ 192 (351)
.+.+.+++.
T Consensus 86 ~~~~~tng~ 94 (139)
T PF13353_consen 86 KIIILTNGY 94 (139)
T ss_dssp EEEEEETT-
T ss_pred CeEEEECCC
Confidence 444445554
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-06 Score=75.41 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=113.5
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++..+.++.+.+.|++.|-++++.++... ...+...++++.+++..++..+.++.+.. .+.++.++++|++.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCcCE
Confidence 357789999999999999999999988763110 01135677888888876677776655432 68899999999999
Q ss_pred eecchhchHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC--CCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG--ESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~--~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg--Et~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+.+.+... +..+++...+++.++.++.+++ .|+.+..+++.-.+ .+.+++.+.++.+.++|++.+.+
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE--AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 998776554321 2122223478899999999999 99999888876667 99999999999999999998887
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=9e-08 Score=77.26 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=46.8
Q ss_pred eccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCCC--cEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 018731 109 LGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G~--~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i 183 (351)
.+.+||.+|.||....... ....+.+++.+.++.+...+. ..|.|+||+|....+ .+.+.++++.+++..|+.
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~--~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLN--PEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTT--HHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccC--HHHHHHHHHHHHhhCCCc
Confidence 5899999999999754321 122455677788877777766 579999999732132 578999999999987778
Q ss_pred EEEEeecCCC
Q 018731 184 MVECLTSDFR 193 (351)
Q Consensus 184 ~i~~~~~~~~ 193 (351)
.+.+.|++..
T Consensus 82 ~i~i~TNg~~ 91 (119)
T PF13394_consen 82 KIRIETNGTL 91 (119)
T ss_dssp EEEEEE-STT
T ss_pred eEEEEeCCee
Confidence 8887777554
|
|
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=73.16 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=99.0
Q ss_pred ccCCCCCCcCcccCCCCCC-----CCCCchhHHHHHHH-HHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 018731 110 GDTCTRGCRFCAVKTSRNP-----APPDPMEPENTAKA-IASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (351)
Q Consensus 110 s~gC~~~C~FC~~~~~~~~-----~~~~~eei~~~~~~-~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i 183 (351)
+-||+..|.||.....+.. .-++|+|+.+-..+ ..+.|.+-+-++|++|. +. .+++.++|+.+-+ -
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~-l~---~EHvlevIeLl~~----~ 119 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPI-LG---REHVLEVIELLVN----N 119 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCcc-cc---HHHHHHHHHhccC----c
Confidence 6799999999987543211 12567776554444 35689999999999973 43 4899999987743 3
Q ss_pred EEEEeecCCCC--CHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-
Q 018731 184 MVECLTSDFRG--DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL- 258 (351)
Q Consensus 184 ~i~~~~~~~~~--~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl- 258 (351)
++-+-|++.++ |...++.|...---.|-+++...++ .+.++++- ..-+..-+++++.+.+ .|+.+..-++.+|
T Consensus 120 tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~--~g~rf~pA~~~~f~ 197 (228)
T COG5014 120 TFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHG--KGHRFWPAVVYDFF 197 (228)
T ss_pred eEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHh--cCceeeehhhhccc
Confidence 44444555433 7888888876422234456666554 23333311 1236677899999998 9999888889888
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 018731 259 GESDDDLKEAMADLRSID 276 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg 276 (351)
.|. ...+....+-+.+
T Consensus 198 ~Ed--~~k~Lak~Lgehp 213 (228)
T COG5014 198 RED--GLKELAKRLGEHP 213 (228)
T ss_pred hhh--hHHHHHHHhccCC
Confidence 332 2223444554544
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=70.12 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=67.6
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+++....|||.+|.||..+.... ..+++.+++.+.++... ..+..|+||||+ +. .+.+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l~---~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---WN---REALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---cC---HHHHHHHHHHHHHC
Confidence 4566777889999999999886432 23466777777776654 246789999999 32 47899999999987
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
++.+.+.|+ +. .++..+.+.+. +|.+..+
T Consensus 88 --Gl~i~l~Tg-~~-~~~~~~~il~~-iD~l~~g 116 (147)
T TIGR02826 88 --GLKTCLYTG-LE-PKDIPLELVQH-LDYLKTG 116 (147)
T ss_pred --CCCEEEECC-CC-CHHHHHHHHHh-CCEEEEC
Confidence 556655554 32 44444455443 6766554
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-05 Score=71.76 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=121.7
Q ss_pred eeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh-CC------CcEEEEec-cCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WG------VDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 108 ~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~-~G------~~~I~ltg-g~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
...-||+.+|+||+.......+.++..||.+.+..+.+ .| +..|++-| |+| +.+ ++.+...++.+...
T Consensus 106 SsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP--l~N--~dnV~~a~~i~~~~ 181 (349)
T COG0820 106 SSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP--LLN--LDNVVKALEIINDD 181 (349)
T ss_pred ecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch--hhh--HHHHHHHHHhhcCc
Confidence 46889999999999877543455778888877766542 22 44666655 665 432 66777777766643
Q ss_pred -CCCc---EEEEeecCCCCCHHHHHHHHHcCCC-eeecchhchHH-HHhh-hc-CCCCCHHHHHHHHHHHHHhCCCCeEE
Q 018731 180 -KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRI-VR-DPRAGYEQSLEVLKHAKLSKKGLITK 251 (351)
Q Consensus 180 -~p~i---~i~~~~~~~~~~~e~l~~L~~aG~~-~i~~~ies~~~-~~~~-~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (351)
..++ ++++.|.+. . +.+..+.+-.++ .+.+++-+.++ .++. +. .+..+.++.+++++.-.+. .|-.|+
T Consensus 182 ~G~~ls~R~iTvSTsGi--~-~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~-t~~rVt 257 (349)
T COG0820 182 EGLGLSKRRITVSTSGI--V-PRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEK-SGRRVT 257 (349)
T ss_pred ccccccceEEEEecCCC--c-hhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhc-cCceEE
Confidence 2233 345555442 2 455666643233 35667766554 3322 21 1256888999988877542 354444
Q ss_pred E--eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcc
Q 018731 252 S--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (351)
Q Consensus 252 ~--~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~ 317 (351)
- .++=|..+..++..+.+++++.+.. +|.+-+| .|+|.. .....+.++...+.+.+...|+.
T Consensus 258 ~EY~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~-Np~~~~--~y~r~~~~~i~~F~~~L~~~gv~ 321 (349)
T COG0820 258 FEYVLLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY-NPVPGS--DYERSSKERIRKFLKILKKAGVL 321 (349)
T ss_pred EEeeecccccCCHHHHHHHHHHhcCCCc-eEEEeec-CCCCCC--CccCCcHHHHHHHHHHHHhCCee
Confidence 3 3344668889999999999998877 4555333 454443 12345556677777777767765
|
|
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.1e-06 Score=69.52 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=54.8
Q ss_pred EeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHhCCC--cEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC
Q 018731 107 MLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~~G~--~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p 181 (351)
.+...|||.+|.||..+..... ...+.+.+.+.++.+...+. ..|.|+||+|. +. .+.+.+.++++++++..+
T Consensus 20 ~if~~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl-~~-~~~~~l~~l~~~~k~~~~ 97 (154)
T PRK11121 20 TLFVSGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPL-HP-QNVPDILKLVQRVKAECP 97 (154)
T ss_pred EEEcCCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCcc-ch-hhHHHHHHHHHHHHHHCC
Confidence 3334999999999988764311 12333444455555555554 68999999972 32 235788899999998777
Q ss_pred CcEEEEeecCCC
Q 018731 182 DIMVECLTSDFR 193 (351)
Q Consensus 182 ~i~i~~~~~~~~ 193 (351)
+..|.+ .+++.
T Consensus 98 ~~~i~~-~tGy~ 108 (154)
T PRK11121 98 GKDIWV-WTGYK 108 (154)
T ss_pred CCCEEE-ecCCC
Confidence 766654 34543
|
|
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=8e-06 Score=69.22 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=51.1
Q ss_pred ccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhCC-CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 110 GDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 110 s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~G-~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
..|||.+|.||..+.... ...++.+++.++++.+.+.+ +..|.|+||+|. ...+.+.+.++++.+++..
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPl--lq~~~~~l~~ll~~~k~~~ 94 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPL--YPRNVEELIELVKKIKAEF 94 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhC--CCCCHHHHHHHHHHHHHhC
Confidence 478999999999876431 23466666777777777665 678999999973 3223578999999999864
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.4e-05 Score=67.51 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=51.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHHHHHHHHh--CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik 177 (351)
..++..=..|||.+|.+|........ ....+..+.+++..+.+ .+.+.|+||||+| .+. +.+.++++.++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V~lTGGEP-~~~----~~l~~Ll~~l~ 96 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGVSLTGGEP-LLQ----PNLLELLELLK 96 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcceEEEeCCcC-CCc----ccHHHHHHHHH
Confidence 44444456799999999997754321 11122333444444455 3566899999998 232 46888999998
Q ss_pred HhCCCcEEEEeec
Q 018731 178 KQKPDIMVECLTS 190 (351)
Q Consensus 178 ~~~p~i~i~~~~~ 190 (351)
+. ++.+.+-|+
T Consensus 97 ~~--g~~~~lETn 107 (212)
T COG0602 97 RL--GFRIALETN 107 (212)
T ss_pred hC--CceEEecCC
Confidence 86 566555444
|
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00093 Score=65.09 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHcCCCeeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCH-HHHHHHHH
Q 018731 194 GDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESD-DDLKEAMA 270 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~-e~~~~~l~ 270 (351)
++++.+++..+.+++-+++++.+.++ ++ ++++ .....++++.++++.+ +||.+.+.+++--|-++ +++.+|+.
T Consensus 126 l~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~--n~~a~~il~~l~~l~~--~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 126 LPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLK--NPRAGLILEQLKWFQE--RRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred CCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhC--CCCHHHHHHHHHHHHH--cCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 47888899999999999999998876 44 5555 3488999999999999 99999998877556555 78999999
Q ss_pred HHHhC
Q 018731 271 DLRSI 275 (351)
Q Consensus 271 ~l~~l 275 (351)
+|.++
T Consensus 202 dL~~~ 206 (433)
T TIGR03279 202 DLAQF 206 (433)
T ss_pred HHHhh
Confidence 99998
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0006 Score=65.79 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=102.0
Q ss_pred cccCCCCC--CCCCCchhHHHHHHHHHhC---CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc-EEEEeecCCC
Q 018731 120 CAVKTSRN--PAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI-MVECLTSDFR 193 (351)
Q Consensus 120 C~~~~~~~--~~~~~~eei~~~~~~~~~~---G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i-~i~~~~~~~~ 193 (351)
|-+++... ..+.+.+++.+.++.+... +...|-++||+|+ ++ +++.++++..++. ++ +|...|++..
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPT-vr----~DL~eiv~~a~e~--g~~hVqinTnGir 150 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPT-LR----DDLIEIIKIAREE--GYDHVQLNTNGIR 150 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCcc-ch----hhHHHHHHHHhhc--CccEEEEccCcee
Confidence 65555332 2456678999999888764 4578999999974 65 6899999999987 44 7777776533
Q ss_pred --CCHHHHHHHHHcCCCeeecchhchHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHH
Q 018731 194 --GDLRAVETLVHSGLDVFAHNIETVKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEA 268 (351)
Q Consensus 194 --~~~e~l~~L~~aG~~~i~~~ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~ 268 (351)
.+.+..+.|++||++.++++.+..++. +..+ .-++-.+++..++ .|+. +.-++.++ |-++.++-+.
T Consensus 151 lA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~------~~eIk~alen~r~--~g~~-svVLVptl~rgvNd~~lG~i 221 (475)
T COG1964 151 LAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN------HWEIKQALENCRK--AGLP-SVVLVPTLIRGVNDHELGAI 221 (475)
T ss_pred eccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH------hhhhHHHHHHHHh--cCCC-cEEEEeehhcccChHHHHHH
Confidence 468999999999999999998887663 3211 3334447788888 8875 33445566 8899999999
Q ss_pred HHHHHh
Q 018731 269 MADLRS 274 (351)
Q Consensus 269 l~~l~~ 274 (351)
+++..+
T Consensus 222 irfa~~ 227 (475)
T COG1964 222 IRFALN 227 (475)
T ss_pred HHHHHh
Confidence 999874
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.017 Score=53.28 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=98.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..+.++.+.+.|++.|-+++ |. .. +...+.++.+.+......+.... ..+.+-++...++|++.
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~--P~-~~----~~~~~~~~~l~~~~~~~~v~~~~---r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS--PA-AS----PQSRADCEAIAKLGLKAKILTHI---RCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC--CC-CC----HHHHHHHHHHHhCCCCCcEEEEe---cCCHHHHHHHHHcCcCE
Confidence 46678889999999999999998864 32 22 44556666665443222332221 23667899999999999
Q ss_pred eecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+... ...+ .+....+...+.++.+++ .|+.+..++.-.++-+.+.+.+.++.+.+.|++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~--~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS--KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 887664444432 2121 112234556667788888 8999999998878777899999999999999998766
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.016 Score=53.33 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=99.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..+.++.+.+.|++.|-++ .| .+. +.-.+.++.+.+..++..+.++.. .+.+.++...++|++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g--~p-~~~----~~~~e~~~~l~~~~~~~~~~~~~r---~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVG--IP-AMG----EEEREAIRAIVALGLPARLIVWCR---AVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--cC-CCC----HHHHHHHHHHHhcCCCCEEEEecc---CCHHHHHHHHhCCcCE
Confidence 4667889999999999999998774 22 232 222356777776555666655432 2567889999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. .+.++ .+....+...+.++.+++ .|+.+..+++.+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD--RGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 98866444432 22222 112234556678889999 9998887777665677999999999999999998776
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.013 Score=54.88 Aligned_cols=144 Identities=17% Similarity=0.259 Sum_probs=97.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~-l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..++++..++++.+.+.|++.|=+++-..+. ++. ..+-.+.++.+.+ .++..+..+.+ +.+-++...++|++
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~--~~d~~e~~~~l~~-~~~~~~~~l~~----~~~~ie~A~~~g~~ 94 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQ--MADAAEVMAGIQR-RPGVTYAALTP----NLKGLEAALAAGAD 94 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccc--cccHHHHHHhhhc-cCCCeEEEEec----CHHHHHHHHHcCCC
Confidence 4677888999999999999999775332221 221 1122567777765 35666665543 56778999999999
Q ss_pred eeecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC---C---CHHHHHHHHHHHHhCCCCEE
Q 018731 209 VFAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG---E---SDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 209 ~i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg---E---t~e~~~~~l~~l~~lg~d~i 280 (351)
.|.+.+-+.+... +..+ .+....++..+.++.+++ .|+.+..++...++ + +.+.+.+.++.+.+.|++.+
T Consensus 95 ~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~--~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 172 (287)
T PRK05692 95 EVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQ--AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEI 172 (287)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 9988765544432 2222 011233456678888888 89988777765442 2 67888999999999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 ~l 174 (287)
T PRK05692 173 SL 174 (287)
T ss_pred Ee
Confidence 77
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.021 Score=55.62 Aligned_cols=141 Identities=18% Similarity=0.103 Sum_probs=98.8
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..++++.+.+.|++.|-+ |.| ... +.-.+.++.+.+......+.++.. ...+.++...++|++.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~--G~p-~~~----~~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEA--GFP-AVS----EDEKEAIKAIAKLGLNASILALNR---AVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEE--eCC-CcC----hHHHHHHHHHHhcCCCeEEEEEcc---cCHHHHHHHHhCCcCE
Confidence 467788999999999999999877 333 233 233456777766544444444322 2467899999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+.+.+.. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~--~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKD--HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 98877665543 23332 011234445558888888 8999888777665677899999999999999998776
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.023 Score=55.06 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=98.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++..++++.+.+.|++.|-++ .| ... +.=.+.++.+.+..++..+.++.. .+.+.++...++|++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG--~p-~~~----~~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVG--IP-AMG----EEERAVIRAIVALGLPARLMAWCR---ARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----HHHHHHHHHHHHcCCCcEEEEEcC---CCHHHHHHHHcCCcCE
Confidence 4677889999999999999998773 33 233 233466777776655656654432 2678899999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~--~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARD--RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh--CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 88876554442 23332 011233445578888898 8998877766655566888899999999999998766
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.017 Score=55.95 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=101.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
..+.++..++++.+.+.|++.|-++ .+ ..+ +.-.+.++.+.+..+...+..+.. ...+.++...++|++.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG--~p-~~~----~~~~e~i~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAG--FP-IAS----EGEFEAIKKISQEGLNAEICSLAR---ALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----hHHHHHHHHHHhcCCCcEEEEEcc---cCHHHHHHHHHcCcCE
Confidence 4677899999999999999998773 32 122 233567777777655555554433 2578899999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+.+..++.-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~--~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE--HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINI 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 88766554442 22332 112245677788999999 9999887776655667899999999999999998776
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.025 Score=52.31 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=99.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC---
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG--- 206 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG--- 206 (351)
..+.++..+.++.+.+.|++.|-+++.. .. .+.+ +.++.+.+..++..+.++... ..+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~---~~---~~~~-~~~~~l~~~~~~~~~~~l~r~---~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPA---AS---PGDF-EAVKRIAREVLNAEICGLARA---VKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC---HHHH-HHHHHHHHhCCCCEEEEEccC---CHhhHHHHHHhCCCC
Confidence 4567888999999999999999885422 11 1233 677788776677777665532 456778888888
Q ss_pred -CCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 207 -LDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 207 -~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
++.|.+..-..+.. .+..+ .+....+...+.++.+++ .|+.+..+.+.+..-+.+.+.+.++.+.++|++.+.+
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS--HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 99887754333332 22222 112345667788999999 8998887776665667888899999999999998777
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.03 Score=51.65 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=94.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC-----CC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-----DD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~-----~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L 202 (351)
..+.++..+.++.+.+.|++.|=++.... .. .+. ..=.+.++.+++..++..+.++........+.++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHH
Confidence 46778899999999999999887762110 00 111 112345566655556667655432222356788999
Q ss_pred HHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.++|++.+.+..- ........+.++.+++ .|+.+..+++-...-+++.+.+.++.+.+.|++.+.+
T Consensus 95 ~~~g~~~iri~~~------------~s~~~~~~~~i~~ak~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 95 ADLGVDVVRVATH------------CTEADVSEQHIGAARK--LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHcCCCEEEEEec------------hhhHHHHHHHHHHHHH--CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999865321 1233456788999999 9999888887666678899999999999999998776
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.03 Score=51.73 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=96.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEec--cCCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltg--g~~~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~ 203 (351)
..+.++..++++.+.+.|++.|=++- +...... -...+.+.++.+..+ ++..+.++......+.+.++...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCCHHHHHHHh
Confidence 46778999999999999999886642 1111100 001233333333222 34566655443333678888889
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.|++.|.+.. +....++..+.++.+++ .|+.+..+++..++-+.+.+.+.++.+.+.|++.+.+
T Consensus 93 ~~gv~~iri~~------------~~~~~~~~~~~i~~ak~--~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 93 GSVVDMIRVAF------------HKHEFDEALPLIKAIKE--KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred cCCcCEEEEec------------ccccHHHHHHHHHHHHH--CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999876642 24578889999999999 9999999988888889999999999999999998776
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.012 Score=56.25 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=95.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEecc-CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg-~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..+.++-+++++.+.+.|++.|=++.. .+...+. ..+-.++++.+++. ++..+.++.+ +.+-++...++|++
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq--mad~~ev~~~i~~~-~~~~~~~l~~----n~~die~A~~~g~~ 136 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ--LADAKDVMAAVRNL-EGARFPVLTP----NLKGFEAAIAAGAK 136 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cccHHHHHHHHHhc-cCCceeEEcC----CHHHHHHHHHcCcC
Confidence 356788889999999999999977542 2211221 12444566666653 4555544443 67889999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeee--eeC---C-CCHHHHHHHHHHHHhCCCC
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIM--LGL---G-ESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~I--vGl---g-Et~e~~~~~l~~l~~lg~d 278 (351)
.|.+.+-+.+...+..- +.+.++ ..+.++.+++ .|+.+...+. +|. + -+.+.+.+.++.+.+.|++
T Consensus 137 ~v~i~~s~Sd~h~~~n~--~~t~~e~l~~~~~~v~~Ak~--~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad 212 (347)
T PLN02746 137 EVAVFASASESFSKSNI--NCSIEESLVRYREVALAAKK--HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCY 212 (347)
T ss_pred EEEEEEecCHHHHHHHh--CCCHHHHHHHHHHHHHHHHH--cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCC
Confidence 99887744444322221 234444 4468888888 8999876664 443 2 2567788899999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 213 ~I~l 216 (347)
T PLN02746 213 EISL 216 (347)
T ss_pred EEEe
Confidence 8877
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.019 Score=54.94 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=97.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC-----C--CCCCCcHHHHHHHHHHHHHhCCCcEEEE-eecCCCCCHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-----D--DIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVET 201 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~-----~--~l~~~~~~~~~~li~~ik~~~p~i~i~~-~~~~~~~~~e~l~~ 201 (351)
..+.++..+.++.+.+.|++.|=++.++. . ..+. .. =.+.++.+++..++..+.+ +.|+. .+.+.++.
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~--~~-~~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~ 96 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA--HT-DEEYIEAAAEVVKQAKIAALLLPGI-GTVDDLKM 96 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC--CC-HHHHHHHHHHhCCCCEEEEEeccCc-ccHHHHHH
Confidence 46778999999999999999987763321 0 0110 01 1345556655555666664 33433 36688999
Q ss_pred HHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEe
Q 018731 202 LVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 202 L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~ 281 (351)
..++|++.|.+.. .....+...+.++.+++ .|+.+...++....-+++.+.+.++.+.+.|++.+.
T Consensus 97 a~~~gvd~iri~~------------~~~e~~~~~~~i~~ak~--~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 97 AYDAGVRVVRVAT------------HCTEADVSEQHIGLARE--LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred HHHcCCCEEEEEE------------ecchHHHHHHHHHHHHH--CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9999999986542 12244567889999999 999999988887778899999999999999999876
Q ss_pred e
Q 018731 282 L 282 (351)
Q Consensus 282 i 282 (351)
+
T Consensus 163 i 163 (337)
T PRK08195 163 V 163 (337)
T ss_pred e
Confidence 6
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.03 Score=53.47 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC----------CCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR----------DDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRA 198 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~----------~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~ 198 (351)
..+.++..++++.+.+.|+..|=++.|+. +..+ ..+ .++.+.+..++..+.++ .|+. .+.+.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~--~~e----~i~~~~~~~~~~~~~~ll~pg~-~~~~d 92 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT--DLE----YIEAAADVVKRAKVAVLLLPGI-GTVHD 92 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC--hHH----HHHHHHHhCCCCEEEEEeccCc-cCHHH
Confidence 46778999999999999999987762211 1112 123 33444443445565533 3433 36788
Q ss_pred HHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCC
Q 018731 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 199 l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d 278 (351)
++...++|++.|.+.. .....+...+.++.+++ .|+.+...++..+.-+++.+.+.++.+.+.|++
T Consensus 93 l~~a~~~gvd~iri~~------------~~~e~d~~~~~i~~ak~--~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~ 158 (333)
T TIGR03217 93 LKAAYDAGARTVRVAT------------HCTEADVSEQHIGMARE--LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGAD 158 (333)
T ss_pred HHHHHHCCCCEEEEEe------------ccchHHHHHHHHHHHHH--cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999986542 12244567788999999 999998888887788999999999999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 159 ~i~i 162 (333)
T TIGR03217 159 CVYI 162 (333)
T ss_pred EEEE
Confidence 8766
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.067 Score=49.70 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=97.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEecc-CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg-~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..++++-.+.++.+.+.|++.|-+++. .+..++. .....++++.+... ++.++.++.+ +.+-++...++|++
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~--~~d~~~~~~~l~~~-~~~~~~~~~~----~~~dv~~A~~~g~~ 88 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQ--MADAEEVLAGLPRR-PGVRYSALVP----NLRGAERALAAGVD 88 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc--cCCHHHHHhhcccC-CCCEEEEECC----CHHHHHHHHHcCcC
Confidence 356788899999999999999988643 2221221 11222455555543 3566665542 56779999999999
Q ss_pred eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC-----C-CHHHHHHHHHHHHhCCCCEE
Q 018731 209 VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-----E-SDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 209 ~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg-----E-t~e~~~~~l~~l~~lg~d~i 280 (351)
.+.+.+-+.+.. .+.++ .+....+...+.++.+++ .|+.+..+++.-++ . +.+.+.+.++.+.+.|++.+
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~--~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA--AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEI 166 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 988766555443 22232 012345677788889999 99998777765442 2 56778889999999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 167 ~l 168 (274)
T cd07938 167 SL 168 (274)
T ss_pred EE
Confidence 77
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.011 Score=53.41 Aligned_cols=143 Identities=22% Similarity=0.200 Sum_probs=89.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~~ 209 (351)
.+.++..+.++.+.+.|++.|-+.. + ... +.-.+.++.+.+..+...+.........+ +..++.++++|++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~--~-~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF--P-FAS----EDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH--C-TSS----HHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc--c-ccC----HHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCE
Confidence 5678889999999999999988851 1 122 22233334444333334554433211111 23356667799999
Q ss_pred eecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.+.....+... ..++ .+....+...+.++.+++ .|+.+..+++-...-+.+++.+.++.+.++|++.+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~--~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKE--LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH--TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh--cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 987655444332 2221 011235566777888888 9999877776655678899999999999999999877
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.096 Score=49.20 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=79.6
Q ss_pred ecCCCCCHHHHHHHHHcCCCeeecchhch-HHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CC-CHHH
Q 018731 189 TSDFRGDLRAVETLVHSGLDVFAHNIETV-KRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE-SDDD 264 (351)
Q Consensus 189 ~~~~~~~~e~l~~L~~aG~~~i~~~ies~-~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gE-t~e~ 264 (351)
.|++- ...++..|...|+.++-+|++|. ++. ++-.| +|+...+.+....+++ +|++|.+.+|.-+ +- -+.|
T Consensus 230 RPDyC-~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNR--GHTV~aVce~F~laKD--aG~KvV~HMMPdLPNVg~eRD 304 (554)
T KOG2535|consen 230 RPDYC-LKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNR--GHTVKAVCESFHLAKD--AGFKVVAHMMPDLPNVGMERD 304 (554)
T ss_pred Ccccc-hhhhHHHHHhcCCceEEeccchhHHHhhhcccC--CccHHHHHHHhhhhhc--cCceeehhhCCCCCCCchhhh
Confidence 35654 46789999999999999999996 444 34444 8999999999999999 9999999999766 22 2334
Q ss_pred HHHHHHHHHh--CCCCEEeeeccc--CCCCCc--ccc--cCCCCHHHHHHHHHHHHh
Q 018731 265 LKEAMADLRS--IDVDILTLGQYL--QPTPLH--LTV--KEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 265 ~~~~l~~l~~--lg~d~i~i~~~l--~PTp~~--~~~--~~~v~~~e~~~~~~~~~~ 313 (351)
+....++... +..|-+.+++.| +-|.++ |.. ....+|+++..+.+....
T Consensus 305 ieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILa 361 (554)
T KOG2535|consen 305 IEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILA 361 (554)
T ss_pred HHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHh
Confidence 4444444443 345666665444 226654 211 133567666665444333
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.15 Score=51.21 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=96.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++.+++++.+.+.|++.|=++. |. .+. .. .+.++.+.+...+..+..+... ..+.++...++|++.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~--p~-~~~---~d-~e~v~~i~~~~~~~~i~a~~r~---~~~di~~a~~~g~~~ 89 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGS--AI-TSE---GE-REAIKAVTDEGLNAEICSFARA---VKVDIDAALECDVDS 89 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC--Cc-CCH---HH-HHHHHHHHhcCCCcEEEeeccc---CHHHHHHHHhCCcCE
Confidence 46778999999999999999987743 21 121 22 3456666655444555544432 356689999999999
Q ss_pred eecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+-+.+.++.+.+.|++.+.+
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKD--HGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 88877665543 22232 112344566677788888 8998887777655556777789999999999998776
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.22 Score=50.52 Aligned_cols=144 Identities=18% Similarity=0.079 Sum_probs=93.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~ 208 (351)
.++.++..++++.+.+.|++.|-++ .|. ... ..+ +.++.+.+..++..+.++......+ +..++.++++|.+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G--~p~-~s~---~d~-~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAG--FPA-SSP---GDF-EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc--CCC-CCh---HHH-HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCC
Confidence 4677888999999999999998773 331 221 233 3446665555566776655321111 2344455588999
Q ss_pred eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 209 VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 209 ~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+|.+.+-+.+-. ...++ .+....+...+.++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 95 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARS--YTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred EEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 988876655442 23332 011233445578888898 8998876666555455777899999999999998776
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.22 Score=46.24 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=93.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCC-----CCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----C-----CC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----F-----RG 194 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~-----~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~-----~~ 194 (351)
..+.++..+.+..+.+.|+..|=++++... .... .=.+.++.+.+..++..+.++... + ..
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~----~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~ 92 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE----DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDV 92 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC----CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHH
Confidence 356788888999999999999987653210 0111 114555666665555555433221 0 01
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADL 272 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l 272 (351)
.++.++...++|++.|.+.. +..+.+...+.++.+++ .|+.+...+.. +-.-+.+.+.+.++.+
T Consensus 93 ~~~di~~~~~~g~~~iri~~------------~~~~~~~~~~~i~~ak~--~G~~v~~~i~~~~~~~~~~~~~~~~~~~~ 158 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFD------------ALNDVRNLEVAIKAVKK--AGKHVEGAICYTGSPVHTLEYYVKLAKEL 158 (275)
T ss_pred HHHHHHHHHHcCCCEEEEee------------cCChHHHHHHHHHHHHH--CCCeEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 46788899999999886532 23467788899999999 99987766654 2256788889999999
Q ss_pred HhCCCCEEee
Q 018731 273 RSIDVDILTL 282 (351)
Q Consensus 273 ~~lg~d~i~i 282 (351)
.+.|++.+.+
T Consensus 159 ~~~Ga~~i~l 168 (275)
T cd07937 159 EDMGADSICI 168 (275)
T ss_pred HHcCCCEEEE
Confidence 9999998877
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.43 Score=44.23 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=91.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEee----cCCC-CCHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLT----SDFR-GDLRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~----~~~~-~~~e~l~~L~ 203 (351)
.++.++..+.++.+.+.|++.|-++.+. .. +.-.+.++.+.+.. ++..+.... ++.. .++..++.++
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPG---SN----PKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCc---CC----HHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 4667889999999999999999884421 11 22344455565542 233433221 2221 1345788899
Q ss_pred HcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeee---eeCCCCHHHHHHHHHHHHhCCCC
Q 018731 204 HSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I---vGlgEt~e~~~~~l~~l~~lg~d 278 (351)
++|++.+.+.+-+.+.. ....+ .+...++...+.++.+++ .|+.+..+.+ -|...+.+.+.+.++.+.+.|++
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~--~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~ 166 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS--HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 166 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCC
Confidence 99999987755443332 22221 112456677788889999 8998777543 23234577778888999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 167 ~i~l 170 (273)
T cd07941 167 WLVL 170 (273)
T ss_pred EEEE
Confidence 8766
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.17 Score=52.01 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=94.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEeec--CCC--------CC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLTS--DFR--------GD 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~----l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~~~--------~~ 195 (351)
+++.++.+.++..+.+.|+..|=+.||...+ +.. +.-.+.++.+++..|+..+.++.. +.. .-
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~---edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv 98 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLN---EDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVV 98 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCC---ccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhh
Confidence 4677889999999999999999887774311 111 344566778888778877766532 211 12
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
+..++...++|++.+.+.. + -.+.+.....++.+++ .|..+...+-+-. -.|.+.+.+.++.+.
T Consensus 99 ~~~v~~A~~~Gvd~irif~-~-----------lnd~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFD-A-----------LNDVRNMEVAIKAAKK--AGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred HHHHHHHHHCCCCEEEEEE-e-----------cChHHHHHHHHHHHHH--cCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4678888999999876531 1 1233455667788888 8888776654322 357888899999999
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|+|.+.+
T Consensus 165 ~~Gad~I~i 173 (592)
T PRK09282 165 EMGCDSICI 173 (592)
T ss_pred HcCCCEEEE
Confidence 999998777
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.26 Score=50.66 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=94.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeec--CC--C------CCHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTS--DF--R------GDLR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~~--~------~~~e 197 (351)
+++.++.+++++.+.+.|+..|=++||...+ ++-.+ +.=.+.++.+++..|++.+.++.. +. . .-++
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 4677899999999999999999888765322 11001 223567778887777877766532 11 1 1245
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~~l 275 (351)
.++...++|++.+.+.. + -.+.+.....++.+++ .|+.+...+-+-. -.|.+.+.+.++.+.+.
T Consensus 96 ~v~~a~~~Gvd~irif~-~-----------lnd~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~ 161 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFD-A-----------LNDPRNLQAAIQAAKK--HGAHAQGTISYTTSPVHTLETYLDLAEELLEM 161 (582)
T ss_pred HHHHHHHCCCCEEEEEE-e-----------cCcHHHHHHHHHHHHH--cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc
Confidence 78889999999876531 1 1123456677788888 8988776643332 35788899999999999
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 162 Gad~I~i 168 (582)
T TIGR01108 162 GVDSICI 168 (582)
T ss_pred CCCEEEE
Confidence 9998777
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.17 Score=47.12 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCCchhHHHHHHHH-HhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh------CCCcEEEEeecCCCCCHHHHHHH
Q 018731 130 PPDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ------KPDIMVECLTSDFRGDLRAVETL 202 (351)
Q Consensus 130 ~~~~eei~~~~~~~-~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~------~p~i~i~~~~~~~~~~~e~l~~L 202 (351)
..+.++-.++++.+ .+.|++.|=+++- .... +.+ +.++.+.+. .+++.+.++.+ ....++..
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~---~~s~---~e~-~av~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~A 83 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASA---RVSE---GEF-EAVQKIIDWAAEEGLLDRIEVLGFVD----GDKSVDWI 83 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCC---CCCH---HHH-HHHHHHHHHhhhhccccCcEEEEecC----cHHHHHHH
Confidence 35678888999986 5679999988542 1221 122 444444321 12344443333 34678999
Q ss_pred HHcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC----CCHHHHHHHHHHHHhCC
Q 018731 203 VHSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG----ESDDDLKEAMADLRSID 276 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg----Et~e~~~~~l~~l~~lg 276 (351)
+++|++.|.+.+-+.+.. .+.++ .+....++..+.++.+++ .|+.+..++.- ++ -+.+.+.+.++.+.+.|
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~--~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G 160 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK--NGIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLP 160 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh--CCCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcC
Confidence 999999998876554443 22222 123355666777888888 89988877764 33 46888899999999999
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
++.+.+
T Consensus 161 ~~~i~l 166 (280)
T cd07945 161 IKRIML 166 (280)
T ss_pred CCEEEe
Confidence 998777
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.27 Score=44.21 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=81.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++..+.++++.+.+.|++.+.+-=-+....++ ..-=.++++.+++..| +.++..+.+ .+..++.++++|.+.|+
T Consensus 23 d~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN--itfGp~~i~~i~~~~~-~DvHLMv~~---P~~~i~~~~~aGad~It 96 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHFDIADGQFSPF--FTVGAIAIKQFPTHCF-KDVHLMVRD---QFEVAKACVAAGADIVT 96 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc--cccCHHHHHHhCCCCC-EEEEeccCC---HHHHHHHHHHhCCCEEE
Confidence 44567788889999999988763222211232 1111244555554332 455554432 45789999999999999
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
+..|+.. +..+.++.+++ .|+.+.+++.+..+-..+.+...+. .+|.+.++ -..|
T Consensus 97 ~H~Ea~~--------------~~~~~l~~Ik~--~g~~~kaGlalnP~Tp~~~i~~~l~-----~vD~VLiM-tV~P 151 (228)
T PRK08091 97 LQVEQTH--------------DLALTIEWLAK--QKTTVLIGLCLCPETPISLLEPYLD-----QIDLIQIL-TLDP 151 (228)
T ss_pred EcccCcc--------------cHHHHHHHHHH--CCCCceEEEEECCCCCHHHHHHHHh-----hcCEEEEE-EECC
Confidence 9888631 12356667788 8987778888876666666665554 37777775 3345
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.32 Score=48.31 Aligned_cols=136 Identities=11% Similarity=0.062 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC----CCCcHHHHHHHHHHHHHhCCCcEEEEee--cCC--C------CC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLT--SDF--R------GD 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l----~~~~~~~~~~li~~ik~~~p~i~i~~~~--~~~--~------~~ 195 (351)
+.+.++.+++++.+.+.|+..|=++||...+- .. +.=.+.++.+++..|++.+.++. ++. . .-
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN---EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC---CCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 46778899999999999999998887753211 11 12356677777766777665322 111 1 12
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
++.++...++|++.+.+.. ++++ .....+.++.+++ .|+.+...+-+-. -.+.+-+.+.++.+.
T Consensus 99 ~~~v~~A~~~Gvd~irif~-~lnd-----------~~n~~~~v~~ak~--~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFD-ALND-----------VRNLETAVKATKK--AGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEE-ecCc-----------HHHHHHHHHHHHH--cCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 4677889999999886542 1111 1234557788888 8887654443322 356788888888899
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|+|.+.+
T Consensus 165 ~~Gad~I~i 173 (448)
T PRK12331 165 EMGADSICI 173 (448)
T ss_pred HcCCCEEEE
Confidence 999998777
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.24 Score=49.74 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=89.8
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCC-----CCCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----CC-----
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDD-----IPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR----- 193 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~-----l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~~----- 193 (351)
.+++.++.+.+++.+.+.|+..|=+.||...+ +. +.=.+.++.+++..|+..+.++..+ +.
T Consensus 22 tr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~----Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~dd 97 (499)
T PRK12330 22 TRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLN----EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDE 97 (499)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC----CCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchh
Confidence 45678999999999999999999887775422 22 2224667788887788777654421 11
Q ss_pred CCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee--eeeCCCCHHHHHHHHHH
Q 018731 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMAD 271 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~ 271 (351)
.-+..++...++|+|.+.+.. +-.+.+....+++.+++ .|..+...+ ..+.-.|.+.+.+.++.
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd------------~lndv~nl~~ai~~vk~--ag~~~~~~i~yt~sp~~t~e~~~~~a~~ 163 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFD------------ALNDPRNLEHAMKAVKK--VGKHAQGTICYTVSPIHTVEGFVEQAKR 163 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEe------------cCChHHHHHHHHHHHHH--hCCeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 014577888889999875431 12233444555666666 666553333 33446778888888888
Q ss_pred HHhCCCCEEee
Q 018731 272 LRSIDVDILTL 282 (351)
Q Consensus 272 l~~lg~d~i~i 282 (351)
+.+.|++.+.+
T Consensus 164 l~~~Gad~I~I 174 (499)
T PRK12330 164 LLDMGADSICI 174 (499)
T ss_pred HHHcCCCEEEe
Confidence 88888887776
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.29 Score=48.81 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=90.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEee--cCCCC--------C
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRG--------D 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~----l~~~~~~~~~~li~~ik~~~p~i~i~~~~--~~~~~--------~ 195 (351)
+.+.++.+++++.+.+.|+..|=+.||...+ +.. +.-.+.++.+++..|++.+.++. ++... -
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN---ENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC---CCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhh
Confidence 4677899999999999999999887664311 111 22356777777766777766532 22110 1
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
+..++...++|++.+.+.. +++ +.+.....++.+++ .|..+...+-+.+ -.|.+.+.+.++.+.
T Consensus 98 ~~fv~~A~~~Gvd~irif~-~ln-----------d~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~ 163 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFD-ALN-----------DIRNLEKSIEVAKK--HGAHVQGAISYTVSPVHTLEYYLEFARELV 163 (467)
T ss_pred HHHHHHHHHCCcCEEEEEE-eCC-----------HHHHHHHHHHHHHH--CCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 2457888899999886542 111 23345566788888 8887765554333 467888889999999
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|+|.+.+
T Consensus 164 ~~Gad~I~i 172 (467)
T PRK14041 164 DMGVDSICI 172 (467)
T ss_pred HcCCCEEEE
Confidence 999998777
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.68 Score=46.70 Aligned_cols=141 Identities=15% Similarity=0.009 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHH----HHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVE----TLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~----~L~~a 205 (351)
.++.++-.++++.+.+.|++.|=+ |.|. .+ ...+ +.++.+.+..++..+.++... .++.++ .+.++
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEv--G~p~-~s---~~d~-e~v~~i~~~~~~~~i~al~r~---~~~did~a~~al~~~ 88 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEA--GFPV-SS---PGDF-EAVQRIARTVKNPRVCGLARC---VEKDIDAAAEALKPA 88 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--ECCC-CC---HHHH-HHHHHHHHhCCCCEEEEEcCC---CHHhHHHHHHhcccc
Confidence 367788899999999999999876 3331 22 1233 344666555555566655432 233344 44455
Q ss_pred CCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 206 GLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 206 G~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.++|.+.+-+.+.. ...++ .+....+...+.++.+++ .|..+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~--~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKN--FTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 778887766554442 23332 011233445568888888 8888776666655556788889999999999998776
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.34 Score=49.86 Aligned_cols=138 Identities=18% Similarity=0.082 Sum_probs=93.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCC-----CC-----CHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-----RG-----DLR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~-----~~-----~~e 197 (351)
+++.++.+.+++.+.+.|+..+=+.||-..+ ++-.+ +.=.+.++.+++..|+..+.++..+- .. -+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~-e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLG-EDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccC-CCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4678899999999999999999887663222 11011 12256777888877887776544421 01 135
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee--eeCCCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM--LGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I--vGlgEt~e~~~~~l~~l~~l 275 (351)
.++..+++|++.+.+.. .-.+.+....+++.+++ .|..+...+- ..-..|.+.+.+.++.+.+.
T Consensus 102 ~v~~a~~~Gid~~rifd------------~lnd~~~~~~ai~~ak~--~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~ 167 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD------------AMNDPRNLETALKAVRK--VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM 167 (593)
T ss_pred HHHHHHhcCCCEEEEee------------eCCcHHHHHHHHHHHHH--cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc
Confidence 58888999999886541 12234566778888888 8887544332 23357788889999999999
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 168 Gad~i~i 174 (593)
T PRK14040 168 GVDSLCI 174 (593)
T ss_pred CCCEEEE
Confidence 9998777
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=95.71 E-value=2.4 Score=43.16 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=91.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEee----cCCC-CCHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLT----SDFR-GDLRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~----~~~~-~~~e~l~~L~ 203 (351)
.++.++-+++++.+.+.|++.|=+ |.|. .. +.-.+.++.+.+... +..|..+. ++.. ..+..++.++
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~--G~p~-~s----~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~ 91 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEG--GWPG-AN----PKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALI 91 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE--eCCC-CC----hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHh
Confidence 467788899999999999999877 3321 12 122344455544322 34554433 2211 1356789999
Q ss_pred HcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeee---eeCCCCHHHHHHHHHHHHhCCCC
Q 018731 204 HSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I---vGlgEt~e~~~~~l~~l~~lg~d 278 (351)
++|.+.|.+.+-+.+-. ...++ .+....+...+.++.+++ .|+.|..+.. -|.--+.+.+.+.++.+.+.|++
T Consensus 92 ~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~--~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad 169 (526)
T TIGR00977 92 KAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKR--QGDEVIYDAEHFFDGYKANPEYALATLATAQQAGAD 169 (526)
T ss_pred cCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCC
Confidence 99999988866655442 22332 012234445566888888 8988754333 34435678889999999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 170 ~i~i 173 (526)
T TIGR00977 170 WLVL 173 (526)
T ss_pred eEEE
Confidence 8777
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.51 Score=47.02 Aligned_cols=138 Identities=13% Similarity=0.067 Sum_probs=89.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----CCC-----CHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FRG-----DLR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~--l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~~~-----~~e 197 (351)
+++.+++...+..+.+.|+..+-+.||...+ +.-.. +.=.+-++.+++..|+..+..+..+ +.- -+.
T Consensus 31 r~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~-edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~ 109 (468)
T PRK12581 31 RLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLN-EDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDK 109 (468)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC-CCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHH
Confidence 4678899999999999999999888876433 11000 1124556777777777766644332 111 134
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee-C-CCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-L-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG-l-gEt~e~~~~~l~~l~~l 275 (351)
.++..++.|+|.+-+. + .-.+.+.....++.+++ .|..+...+.+= - ..|.+-+.+.++.+.+.
T Consensus 110 fv~~a~~~Gidi~Rif----d--------~lnd~~n~~~ai~~ak~--~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~ 175 (468)
T PRK12581 110 FISLSAQNGIDVFRIF----D--------ALNDPRNIQQALRAVKK--TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM 175 (468)
T ss_pred HHHHHHHCCCCEEEEc----c--------cCCCHHHHHHHHHHHHH--cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc
Confidence 5788889999987432 1 12356666777778888 888755433321 1 45677788888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|++.+.+
T Consensus 176 Gad~I~I 182 (468)
T PRK12581 176 GADSICI 182 (468)
T ss_pred CCCEEEE
Confidence 8888776
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.4 Score=44.77 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=91.4
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEee----cCCC-CCHHHHHHH
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLT----SDFR-GDLRAVETL 202 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~----~~~~-~~~e~l~~L 202 (351)
..++.++.+++++.+.+.|++.|=++. |. ... .. .+.++.+.+.. .+..+..+. .+.. .++..++.+
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~--p~-as~---~d-~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGW--PG-SNP---KD-TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcC--Cc-CCh---hH-HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 346788999999999999999987732 21 111 11 34455565422 234444332 1211 135678999
Q ss_pred HHcCCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeee---eeCCCCHHHHHHHHHHHHhCCC
Q 018731 203 VHSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDV 277 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I---vGlgEt~e~~~~~l~~l~~lg~ 277 (351)
+++|.+.|.+.+-+.+-. ...++ .+....+...+.++.+++ .|+.+..+.+ -|.-.+.+-+.+.++.+.+.|+
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Ga 172 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA--HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 172 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEccccccccccCCHHHHHHHHHHHHhCCC
Confidence 999999998876554432 22222 112345566677888888 8988765444 2323446667888888999999
Q ss_pred CEEee
Q 018731 278 DILTL 282 (351)
Q Consensus 278 d~i~i 282 (351)
+.+.+
T Consensus 173 d~i~l 177 (524)
T PRK12344 173 DWVVL 177 (524)
T ss_pred CeEEE
Confidence 98776
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.1 Score=39.72 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=93.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.+.+..++++....|..+|-+.- | .++++.+++. .++.|++.. .+++.+-.-.++|.|.|
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-------d------p~LV~~~~~~-s~lPICVSa----Vep~~f~~aV~AGAdli 85 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-------D------PELVKLAKSL-SNLPICVSA----VEPELFVAAVKAGADLI 85 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-------C------HHHHHHHHHh-CCCCeEeec----CCHHHHHHHHHhCCCEE
Confidence 4567888888888777888876621 1 2345555554 366776533 47888888999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
-+| .+|.+|..-| ..+.+++++..++.|+..|.+.++.++..-| ..++-.+....|.++|+|.+.-
T Consensus 86 EIG--NfDsFY~qGr--~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL--~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 86 EIG--NFDSFYAQGR--RFSAEEVLALTRETRSLLPDITLSVTVPHIL--PLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred Eec--chHHHHhcCC--eecHHHHHHHHHHHHHhCCCCceEEecCccc--cHHHHHHHHHHHHHhCCcEEEc
Confidence 764 2556776544 7899999999999999888887777765433 4455677888899999998765
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.3 Score=40.28 Aligned_cols=131 Identities=19% Similarity=0.173 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.++.+.+.|++++++..-+.. .. ...-.++++.|.+.. ++.+.+ .++..+.|.++.+.++|++++.+|-
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~--~g--~~~n~~~i~~i~~~~-~~pv~v--gGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA--FG--RGSNRELLAEVVGKL-DVKVEL--SGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc--CC--CCccHHHHHHHHHHc-CCCEEE--cCCCCCHHHHHHHHHCCCCEEEECc
Confidence 6778888888999999998665431 11 123347888887753 445543 5566789999999999999998775
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHH-hCCCCeEEEee--eeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKL-SKKGLITKSSI--MLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~-~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..+++ .+-+.+.++...+ ...++.+..+. +.|..++..+..+.++.+.+.|++.+.+.
T Consensus 106 ~~l~~-----------p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~ 166 (241)
T PRK14024 106 AALEN-----------PEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVT 166 (241)
T ss_pred hHhCC-----------HHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEE
Confidence 44322 2222222222222 00122221111 22443455667788888899999988874
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.77 Score=47.24 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=91.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHhCCCcEEEEeec-----CCCC-C----HH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIMVECLTS-----DFRG-D----LR 197 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l--~~~~~~~~~~li~~ik~~~p~i~i~~~~~-----~~~~-~----~e 197 (351)
+++.+++...+..+.+.|+..+-+.||...+- .-.. +.=.+.++.+++..|++.+..+.. ++.. . +.
T Consensus 22 r~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~-edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~ 100 (596)
T PRK14042 22 RMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLK-EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRA 100 (596)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccC-CCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHH
Confidence 46778999999999999999998888764211 1000 122456777887778876665431 1111 1 34
Q ss_pred HHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee--eeeCCCCHHHHHHHHHHHHhC
Q 018731 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 198 ~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~l~~l 275 (351)
.++..++.|+|.+-+. + .-.+.+.....++.+++ .|..+...+ +...-.|.+.+.+.++.+.+.
T Consensus 101 ~v~~a~~~Gidv~Rif----d--------~lnd~~n~~~~i~~~k~--~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~ 166 (596)
T PRK14042 101 FVKLAVNNGVDVFRVF----D--------ALNDARNLKVAIDAIKS--HKKHAQGAICYTTSPVHTLDNFLELGKKLAEM 166 (596)
T ss_pred HHHHHHHcCCCEEEEc----c--------cCcchHHHHHHHHHHHH--cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHc
Confidence 7788889999987432 1 12244555566777777 787655553 333378888888888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|++.+.+
T Consensus 167 Gad~I~I 173 (596)
T PRK14042 167 GCDSIAI 173 (596)
T ss_pred CCCEEEe
Confidence 8888777
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.3 Score=40.52 Aligned_cols=129 Identities=14% Similarity=0.095 Sum_probs=77.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+...+.++++.+.+.|++.+.+-=-+....|+ ...=.++++.+++..| +.++..+.+ .+..++.+.++|.|.|+
T Consensus 30 D~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN--itfGp~~i~~i~~~~p-~DvHLMV~~---P~~~i~~~~~aGad~It 103 (254)
T PRK14057 30 QWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ--FTVGPWAVGQLPQTFI-KDVHLMVAD---QWTAAQACVKAGAHCIT 103 (254)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCccCCc--cccCHHHHHHhccCCC-eeEEeeeCC---HHHHHHHHHHhCCCEEE
Confidence 44577888889989999988763222211222 0011244555554333 455554432 45789999999999999
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-------EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-------TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~-------v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
+..|+... ..++++.+|+ .|++ +.+++.+..+-..+.+...+. .+|.+.++
T Consensus 104 ~H~Ea~~~--------------~~~~l~~Ir~--~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~VLvM- 161 (254)
T PRK14057 104 LQAEGDIH--------------LHHTLSWLGQ--QTVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVIQLL- 161 (254)
T ss_pred EeeccccC--------------HHHHHHHHHH--cCCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEEEEE-
Confidence 98886311 2345566777 7764 456666665655666655544 37777775
Q ss_pred ccCC
Q 018731 285 YLQP 288 (351)
Q Consensus 285 ~l~P 288 (351)
-..|
T Consensus 162 tV~P 165 (254)
T PRK14057 162 AVNP 165 (254)
T ss_pred EECC
Confidence 3355
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=94.91 E-value=1 Score=40.83 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++.++++.-+..... . ..-.++++.+++.. ++.+. ..++..+.+.++.+.+.|++.+.+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~-~--~~~~~~i~~i~~~~-~~pv~--~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEG-R--ETMLDVVERVAEEV-FIPLT--VGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCccccc-C--cccHHHHHHHHHhC-CCCEE--EeCCCCCHHHHHHHHHcCCceEEE
Confidence 457778888888899999999776542111 1 23457788887753 34443 356666888999999999999877
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee------------eCCCCHHHHHHHHHHHHhCCCCEE
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML------------GLGESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv------------GlgEt~e~~~~~l~~l~~lg~d~i 280 (351)
+-.... +++...+..+.+.+ ..+.+..++-. |..++..+..+.++.+.+.|++.+
T Consensus 100 g~~~~~-----------~p~~~~~i~~~~~~--~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 100 NSAAVE-----------NPELIREIAKRFGS--QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred Cchhhh-----------ChHHHHHHHHHcCC--CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 632221 22233333333322 23444554332 223456667778888899999988
Q ss_pred eee
Q 018731 281 TLG 283 (351)
Q Consensus 281 ~i~ 283 (351)
.+.
T Consensus 167 ~v~ 169 (243)
T cd04731 167 LLT 169 (243)
T ss_pred EEe
Confidence 884
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.8 Score=42.59 Aligned_cols=141 Identities=21% Similarity=0.181 Sum_probs=94.5
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEEeecCCCCCHHHHHHHHHcC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~---i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
.++.++-+++++.+.+.|++.|-.+... .+ +.-.+.++.+....+. ..+.+... .....++.+.++|
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~---~s----~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~ea~~~a~ 89 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPV---AS----PGDFEFVRAIAEKAGLFICALIAALAR---AIKRDIEALLEAG 89 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCc---CC----hhhHHHHHHHHHhcCcccchhhhhhHH---hHHhhHHHHHhCC
Confidence 4677899999999999999998774322 22 2334555555532211 11212111 1345889999999
Q ss_pred CCeeecchhchHH-HHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 207 LDVFAHNIETVKR-LQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 207 ~~~i~~~ies~~~-~~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+++|.+-+.+.+- +...++ .+....+...+.++.+++ .|+.+..+..-...-+.+.+.+.++.+.+.|++.+.+
T Consensus 90 ~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~--~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 90 VDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD--HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 9998876666544 222222 123356677788889999 9988776666655777888899999999899988887
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.1 Score=38.41 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=84.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+...+.++++.+.+.|++.+.+-=-+....++ ...=.++++.+++..++ +.++..+.+ .+..++.++++|.+.
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn--~tfg~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad~ 84 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNHYVPN--LTFGAPICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGASM 84 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcccCc--cccCHHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCCE
Confidence 34567788888888999987663222211222 11113566677664222 455554432 357899999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC-
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP- 288 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P- 288 (351)
|++..|+.+. ..+.++.+|+ .|++ +++.+..+-..+.+...+. .+|.+.++ -..|
T Consensus 85 i~~H~Ea~~~--------------~~~~l~~ik~--~g~k--~GlalnP~Tp~~~i~~~l~-----~~D~vlvM-tV~PG 140 (220)
T PRK08883 85 ITFHVEASEH--------------VDRTLQLIKE--HGCQ--AGVVLNPATPLHHLEYIMD-----KVDLILLM-SVNPG 140 (220)
T ss_pred EEEcccCccc--------------HHHHHHHHHH--cCCc--EEEEeCCCCCHHHHHHHHH-----hCCeEEEE-EecCC
Confidence 9998886321 2345566777 7875 4555544444455544433 35666664 3356
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcC
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIG 315 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G 315 (351)
+..+. ......+.+.++++.....|
T Consensus 141 fgGq~--fi~~~lekI~~l~~~~~~~~ 165 (220)
T PRK08883 141 FGGQS--FIPHTLDKLRAVRKMIDESG 165 (220)
T ss_pred CCCce--ecHhHHHHHHHHHHHHHhcC
Confidence 33321 11122334555555554444
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=3 Score=42.11 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=82.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC---------cEEEEeecCCCCCHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---------IMVECLTSDFRGDLRAVE 200 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~---------i~i~~~~~~~~~~~e~l~ 200 (351)
..+.++-.++++.+.+.|++.|-++ .| ... +.-.+.++.|.+..+. ..+..+.. ...+-++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG--~P-a~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R---~~~~dId 171 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVG--FP-GSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIAR---CKKRDIE 171 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----HHHHHHHHHHHHhcccccccccccceEEeeecc---cCHhhHH
Confidence 3677888999999999999988773 33 222 3334556666543211 12332222 1233444
Q ss_pred HHHHc----CCCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCC-HHHHHHHHHHH
Q 018731 201 TLVHS----GLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGES-DDDLKEAMADL 272 (351)
Q Consensus 201 ~L~~a----G~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt-~e~~~~~l~~l 272 (351)
...++ |.++|.+.+-+.+.. ...++ .+....+...+.++.+++ .|+. +..+.-.+ +.+ .+.+.+.++.+
T Consensus 172 ~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~--~G~~~v~f~~EDa-~Rtd~efl~~~~~~a 248 (503)
T PLN03228 172 AAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKS--LGFHDIQFGCEDG-GRSDKEFLCKILGEA 248 (503)
T ss_pred HHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCceEEeccccc-cccCHHHHHHHHHHH
Confidence 44444 778887766555443 22232 112345566678888888 8875 32222222 444 44468888899
Q ss_pred HhCCCCEEee
Q 018731 273 RSIDVDILTL 282 (351)
Q Consensus 273 ~~lg~d~i~i 282 (351)
.+.|++.+.+
T Consensus 249 ~~~Gad~I~l 258 (503)
T PLN03228 249 IKAGATSVGI 258 (503)
T ss_pred HhcCCCEEEE
Confidence 9999998776
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.6 Score=36.99 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=77.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+...+.++++.+.+.|++.+.+-=-+....|+- .-=.++++.+++..++ +.++..+.+ .+..++.++++|.+.
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~--tfg~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad~ 88 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL--TIGPMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGATT 88 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCc--ccCHHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCCE
Confidence 345677888888889999887632222112321 1113466777764223 455554432 357899999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
|++..|+.. . ..++++.+|+ .|++ +++.+..+-..+.+...+. .+|.|.++ -..|
T Consensus 89 I~~H~Ea~~-----------~---~~~~l~~Ir~--~g~k--~GlalnP~T~~~~i~~~l~-----~vD~VlvM-tV~P 143 (223)
T PRK08745 89 ISFHPEASR-----------H---VHRTIQLIKS--HGCQ--AGLVLNPATPVDILDWVLP-----ELDLVLVM-SVNP 143 (223)
T ss_pred EEEcccCcc-----------c---HHHHHHHHHH--CCCc--eeEEeCCCCCHHHHHHHHh-----hcCEEEEE-EECC
Confidence 999888621 1 2355667777 7875 5555554545555554443 46777775 3345
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.7 Score=43.60 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+..+.++.+.+.|++.|++-.-+. ....+.++++.|++.+|++.+-+ ++..+.+....|.++|+|.|.++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g------~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHG------HQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCC------CcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEEC
Confidence 4567788888999999999854432 13789999999999988876543 33458999999999999999876
Q ss_pred hhchHHH-HhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 214 IETVKRL-QRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 214 ies~~~~-~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+-...-. .+.+.+- .....-.++..+.+++ .|+.+-++ |=-.+..|+.+.+ .+|.+.+.++.++
T Consensus 295 ~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~--~~~~viad---Ggi~~~~di~kal----a~GA~~vm~g~~~ 360 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVGRPQFSAVLECAAEARK--LGGHVWAD---GGVRHPRDVALAL----AAGASNVMVGSWF 360 (475)
T ss_pred CcCCccccCccccCCCCchHHHHHHHHHHHHH--cCCcEEEe---CCCCCHHHHHHHH----HcCCCEEeechhh
Confidence 6543321 1222210 2355666777777777 67653332 1125667776654 4899998887655
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=4 Score=40.58 Aligned_cols=118 Identities=7% Similarity=0.035 Sum_probs=71.9
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCH------HHHHHHHHcCC
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL------RAVETLVHSGL 207 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~------e~l~~L~~aG~ 207 (351)
+.++.+.+.|++.|++.+... .+. +...+.+.+.++..++. +..+.+..|....+. +.++.+.++|+
T Consensus 14 e~l~aAi~~GADaVY~G~~~~-~~R~~~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRY-SLRVRNNEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred HHHHHHHHCCCCEEEECCCcc-chhhhccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 445666788999999955321 110 11246788888888876 455544344333222 34777888899
Q ss_pred CeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 208 ~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.|.++ + +..+..+++.++++.+.++.-+.. -+ ..+++++.++|++.+.+.
T Consensus 91 DgvIV~----------------d----~G~l~~~ke~~p~l~ih~stqlni-~N----~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 91 DALIMS----------------D----PGLIMMVREHFPEMPIHLSVQANA-VN----WATVKFWQQMGLTRVILS 141 (443)
T ss_pred CEEEEc----------------C----HHHHHHHHHhCCCCeEEEEecccC-CC----HHHHHHHHHCCCcEEEEC
Confidence 987442 1 133444555446887766665433 12 356688889999988873
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=4.7 Score=37.54 Aligned_cols=170 Identities=16% Similarity=0.121 Sum_probs=93.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++...+.+..-|.-.+... +...+.+.+..++....+.. .+.|.+ .-|.-.+.+.++...++|++.|.
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~~~~~--~~~~~~~~~~~~~~~~a~~~-~vpv~l-HlDH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQIAEVR--LNHSPLHLIGPLMVAAAKQA-KVPVAV-HFDHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcch--hccCChHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 356666777777777766554443322 22223567777777666543 344433 33333478999999999999996
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-eee-------C-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLG-------L-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-IvG-------l-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+---+.+. ....+...+..+.+++ .|+.+.+.+ -+| . |.+..+..+..+++++.|+|.+.+
T Consensus 103 ~d~s~~~~--------~eni~~t~~v~~~a~~--~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAv 172 (281)
T PRK06806 103 FDGSHLPL--------EENIQKTKEIVELAKQ--YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAV 172 (281)
T ss_pred EcCCCCCH--------HHHHHHHHHHHHHHHH--cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEE
Confidence 53111110 1122333455556666 788776653 344 1 222335556667777899999988
Q ss_pred --ecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccC
Q 018731 283 --GQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (351)
Q Consensus 283 --~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~ 322 (351)
++. .+|.. ....+. ++.++++.+..+...+.+|
T Consensus 173 aiG~~-hg~~~---~~~~l~---~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 173 AIGNA-HGMYN---GDPNLR---FDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred ccCCC-CCCCC---CCCccC---HHHHHHHHHhcCCCEEEEC
Confidence 422 23321 122233 4444444444555555544
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.6 Score=37.27 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++++..+.++.+.+.|++.+-+|--+ +...+.++.+++.+|++.|-+- ..++.+.++...++|.+.+
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t---------~~a~~~i~~l~~~~~~~~vGAG---TVl~~~~a~~a~~aGA~Fi- 84 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT---------PVALDAIRLLRKEVPDALIGAG---TVLNPEQLRQAVDAGAQFI- 84 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEEEE---eCCCHHHHHHHHHcCCCEE-
Confidence 56888999999999999988776432 2456788888888888777653 3468999999999999976
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .+.|.+.+-+|
T Consensus 85 ------------vs-P~~~~----~v~~~~~~--~~i~~----iPG-~~TptEi~~A----~~~Ga~~vKlF 128 (204)
T TIGR01182 85 ------------VS-PGLTP----ELAKHAQD--HGIPI----IPG-VATPSEIMLA----LELGITALKLF 128 (204)
T ss_pred ------------EC-CCCCH----HHHHHHHH--cCCcE----ECC-CCCHHHHHHH----HHCCCCEEEEC
Confidence 22 33332 55667777 77753 334 3566676544 46888887775
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=3.7 Score=36.24 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=77.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.++..+.++.+.+.|++.+=+|--++ ...+.++.+++.+|++.|.+- ..++.+.++...++|.+.+
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp---------~a~~~I~~l~~~~~~~~vGAG---TVl~~e~a~~ai~aGA~Fi- 80 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTP---------AALDAIRAVAAEVEEAIVGAG---TILNAKQFEDAAKAGSRFI- 80 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEeeE---eCcCHHHHHHHHHcCCCEE-
Confidence 568889999999999999877764332 356778888887888777653 3468999999999999976
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .++|.+.+-+|
T Consensus 81 ------------vS-P~~~~----~vi~~a~~--~~i~~----iPG-~~TptEi~~A----~~~Ga~~vK~F 124 (201)
T PRK06015 81 ------------VS-PGTTQ----ELLAAAND--SDVPL----LPG-AATPSEVMAL----REEGYTVLKFF 124 (201)
T ss_pred ------------EC-CCCCH----HHHHHHHH--cCCCE----eCC-CCCHHHHHHH----HHCCCCEEEEC
Confidence 22 33232 45556667 77653 344 3566676544 46788887775
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.8 Score=38.12 Aligned_cols=112 Identities=23% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.++..+.++.+.+.|++.+=+|--++ ...+.++.+++.+|++.|.+-| .++.+.++...++|.+.+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~---------~a~~~I~~l~~~~p~~~vGAGT---V~~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTP---------NALEAIEALRKEFPDLLVGAGT---VLTAEQAEAAIAAGAQFI 84 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTST---------THHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCc---------cHHHHHHHHHHHCCCCeeEEEe---ccCHHHHHHHHHcCCCEE
Confidence 3568889999999999999887765332 3467888888888998876533 358999999999999976
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .++|.+.+-+|
T Consensus 85 -------------vS-P~~~~----~v~~~~~~--~~i~~----iPG-~~TptEi~~A----~~~G~~~vK~F 128 (196)
T PF01081_consen 85 -------------VS-PGFDP----EVIEYARE--YGIPY----IPG-VMTPTEIMQA----LEAGADIVKLF 128 (196)
T ss_dssp -------------EE-SS--H----HHHHHHHH--HTSEE----EEE-ESSHHHHHHH----HHTT-SEEEET
T ss_pred -------------EC-CCCCH----HHHHHHHH--cCCcc----cCC-cCCHHHHHHH----HHCCCCEEEEe
Confidence 22 33222 45556777 77764 333 2466776554 46888888884
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.7 Score=43.70 Aligned_cols=135 Identities=17% Similarity=0.266 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.+.++.+.+.|++.|++-..+.. ...+.++++.||+.+|++.|-+ .+. .+.+....|.++|+|.|-+|
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v~a--gnv-~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPIVA--GNV-VTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeEEe--ecc-CCHHHHHHHHHcCCCEEEEC
Confidence 45677888888999999888544331 2689999999999999876543 222 37899999999999999877
Q ss_pred hhchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 214 IETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 214 ies~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+=+..- ..+.+.+- ...+.-+.+..+.+++ .|+.+-++ |=-.+..++.+.+. +|.+.+.++.++
T Consensus 297 ig~gsictt~~~~~~~~p~~~av~~~~~~~~~--~~~~via~---ggi~~~~~~~~al~----~ga~~v~~g~~~ 362 (479)
T PRK07807 297 VGPGAMCTTRMMTGVGRPQFSAVLECAAAARE--LGAHVWAD---GGVRHPRDVALALA----AGASNVMIGSWF 362 (479)
T ss_pred ccCCcccccccccCCchhHHHHHHHHHHHHHh--cCCcEEec---CCCCCHHHHHHHHH----cCCCeeeccHhh
Confidence 655332 11222210 1244445555555555 56654332 22356677766654 799988887655
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.7 Score=38.64 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC-CHHHHHHHHHHHHhCCCCEEee
Q 018731 227 PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 227 ~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE-t~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+.+.++.++.++.+++ .+..+-..+|.-++. -.--+.+.++.+++.|+|.+-+
T Consensus 74 ~g~t~~~~lel~~~~r~--~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 74 AGVTLEDTLELVEEIRA--KGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred CCCCHHHHHHHHHHHHh--cCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 36788888888888887 444332323322221 1122345677777888887655
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=3.8 Score=36.50 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=74.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~---p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
+.++....++.+.+.|++-+=+|--.+ ...+.++.+++.+ |++.|.+ +..++.+.++...++|.+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~---------~a~~~i~~l~~~~~~~p~~~vGa---GTV~~~~~~~~a~~aGA~ 90 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNP---------FASEVIKELVELYKDDPEVLIGA---GTVLDAVTARLAILAGAQ 90 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCc---------cHHHHHHHHHHHcCCCCCeEEee---eeCCCHHHHHHHHHcCCC
Confidence 567888999999999999776653322 3567788888776 4566654 234689999999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+- . |..+. +.++.+++ .|+. ++.| -.|..|+.+.+ +.|+|.+.+|
T Consensus 91 Fiv-------------s-P~~~~----~v~~~~~~--~~i~----~iPG-~~T~~E~~~A~----~~Gad~vklF 136 (213)
T PRK06552 91 FIV-------------S-PSFNR----ETAKICNL--YQIP----YLPG-CMTVTEIVTAL----EAGSEIVKLF 136 (213)
T ss_pred EEE-------------C-CCCCH----HHHHHHHH--cCCC----EECC-cCCHHHHHHHH----HcCCCEEEEC
Confidence 762 2 33332 44455666 6765 3445 35667765553 5888888874
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=93.24 E-value=4.8 Score=36.10 Aligned_cols=163 Identities=12% Similarity=0.151 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|+++++++.-+...... ..-.++++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+-++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~---~~n~~~~~~i~~~~-~~pv~~--~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGR---EPLFELISNLAEEC-FMPLTV--GGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCHHHHHHHHHhC-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 367778888888999999997765421111 12345666666643 345433 445557888888999999998777
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC----------C---CCHHHHHHHHHHHHhCCCCEE
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL----------G---ESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl----------g---Et~e~~~~~l~~l~~lg~d~i 280 (351)
-...+ +.+...+..+...+ ..+.++.++--|+ | ++..+..+.++.+.+.|++.+
T Consensus 104 ~~~l~-----------~~~~~~~~~~~~~~--~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i 170 (232)
T TIGR03572 104 TAALE-----------NPDLIEEAARRFGS--QCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEI 170 (232)
T ss_pred hhHhc-----------CHHHHHHHHHHcCC--ceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 33321 12222222222211 1233444433321 1 234456678888889999998
Q ss_pred eeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccCc
Q 018731 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (351)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~~ 323 (351)
.+.. +.++... ... .++.++++.+..+..-+.+|-
T Consensus 171 ~i~~-i~~~g~~----~g~---~~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 171 LLNS-IDRDGTM----KGY---DLELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred EEeC-CCccCCc----CCC---CHHHHHHHHhhCCCCEEEECC
Confidence 8853 2222111 112 244455555555555555543
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=93.19 E-value=6 Score=36.31 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC-CCCC---C-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDDI---P-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~l---~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.++...+.|+..|-+.|.. ++.. . +.+.+++..+++.+++.. ++.+.+=| .+++.++.-.++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT----~~~~vi~~al~~ 94 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDT----YRAEVARAALEA 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC----CCHHHHHHHHHc
Confidence 567889999999999999999884321 1111 1 112345777888887653 44443312 256777777777
Q ss_pred CCCeee
Q 018731 206 GLDVFA 211 (351)
Q Consensus 206 G~~~i~ 211 (351)
|.+.|+
T Consensus 95 G~~iIN 100 (257)
T TIGR01496 95 GADIIN 100 (257)
T ss_pred CCCEEE
Confidence 777765
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=6.7 Score=35.77 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCCeeecc
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~~i~~~ 213 (351)
.+.+.++.+.+.|++.|+|.--+++.-- +.+.+.++++..... .++++-. -|...+ .+.++.|.+.|+++|--+
T Consensus 74 ~M~~di~~~~~~GadGvV~G~L~~dg~v--D~~~~~~Li~~a~~~--~vTFHRA-fD~~~d~~~al~~l~~lG~~rILTS 148 (248)
T PRK11572 74 AMLEDIATVRELGFPGLVTGVLDVDGHV--DMPRMRKIMAAAGPL--AVTFHRA-FDMCANPLNALKQLADLGVARILTS 148 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeeECCCCCc--CHHHHHHHHHHhcCC--ceEEech-hhccCCHHHHHHHHHHcCCCEEECC
Confidence 3456777788899999998554432112 246677777665432 3344310 011113 478999999999998321
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+...+..+-++.|+.+.+...|. . +|.|=|=+.+.+.+. .+.|+..++.+
T Consensus 149 ------------Gg~~~a~~g~~~L~~lv~~a~~~---~-Im~GgGV~~~Nv~~l----~~tG~~~~H~s 198 (248)
T PRK11572 149 ------------GQQQDAEQGLSLIMELIAASDGP---I-IMAGAGVRLSNLHKF----LDAGVREVHSS 198 (248)
T ss_pred ------------CCCCCHHHHHHHHHHHHHhcCCC---E-EEeCCCCCHHHHHHH----HHcCCCEEeeC
Confidence 12235666666666666533342 1 889989999988774 25899888874
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=5.9 Score=35.54 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=74.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.++..+.++.+.+.|++.+=+|--++. ..+.+.++.+..++.+|++.|.+- ..++.+.++...++|.+.+
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~-----a~~~i~~l~~~~~~~~p~~~vGaG---TVl~~e~a~~a~~aGA~Fi- 95 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDF-----AHEVFAELVKYAAKELPGMILGVG---SIVDAATAALYIQLGANFI- 95 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCc-----HHHHHHHHHHHHHhhCCCeEEeeE---eCcCHHHHHHHHHcCCCEE-
Confidence 5678889999999999997777643332 134555665666666787777653 3468999999999999976
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+.+ +.| --|..|+... .++|.+.+-+|
T Consensus 96 ------------Vs-P~~~~----~v~~~~~~--~~i~~----iPG-~~TpsEi~~A----~~~Ga~~vKlF 139 (222)
T PRK07114 96 ------------VT-PLFNP----DIAKVCNR--RKVPY----SPG-CGSLSEIGYA----EELGCEIVKLF 139 (222)
T ss_pred ------------EC-CCCCH----HHHHHHHH--cCCCE----eCC-CCCHHHHHHH----HHCCCCEEEEC
Confidence 12 33232 44455666 66652 333 3456665444 45777776664
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=92.90 E-value=6.4 Score=35.95 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++.++++.-+...- +...-.++++.+++.. ++.+.+ .++..+.+.++.+.++|++.+.+|
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~-~~pv~~--~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETV-FIPLTV--GGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4677788888889999999976654211 1234567777787753 445443 456668999999999999999887
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCC--CCeEEEeee-------------e--eCCCCHHHHHHHHHHHHhCC
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK--GLITKSSIM-------------L--GLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~--Gi~v~~~~I-------------v--GlgEt~e~~~~~l~~l~~lg 276 (351)
-..... . +.++.+.+.++ -+.++.++- + |..++.++..+.++.+.+.|
T Consensus 104 t~~~~~-----------p----~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 104 TAAVKN-----------P----ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred hhHhhC-----------h----HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 544322 1 11112221111 133344321 1 11344667778888899999
Q ss_pred CCEEeee
Q 018731 277 VDILTLG 283 (351)
Q Consensus 277 ~d~i~i~ 283 (351)
++.+.+.
T Consensus 169 ~~~iivt 175 (254)
T TIGR00735 169 AGEILLT 175 (254)
T ss_pred CCEEEEe
Confidence 9988874
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.9 Score=38.82 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.++--+.+- + .-+.+++.+.++.+.+...| ...+++|. +.+.++..+.++.+.++
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~-~------~lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGES-P------TLSDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcch-h------hCCHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHc
Confidence 56777778888887654222211 1 23667777777766663322 23467788 56788888888888888
Q ss_pred CCCEEeee
Q 018731 276 DVDILTLG 283 (351)
Q Consensus 276 g~d~i~i~ 283 (351)
|+|.+.+.
T Consensus 95 G~d~v~~~ 102 (284)
T cd00950 95 GADAALVV 102 (284)
T ss_pred CCCEEEEc
Confidence 88877663
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=92.61 E-value=4.7 Score=37.06 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=47.5
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC-CCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-DDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~ 204 (351)
..+.+++.+.+....+.|+.-|-+.|... +... ..+.+++..+++.+++.. ++.+.+ |. .+.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSI---DT-~~~~v~e~al~ 94 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISV---DT-FRAEVARAALE 94 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEE---eC-CCHHHHHHHHH
Confidence 35678889999999999999988854221 1111 122346666778777653 333332 21 25677777667
Q ss_pred cCCCeee
Q 018731 205 SGLDVFA 211 (351)
Q Consensus 205 aG~~~i~ 211 (351)
+|.+.|+
T Consensus 95 ~G~~iIN 101 (257)
T cd00739 95 AGADIIN 101 (257)
T ss_pred hCCCEEE
Confidence 7777665
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=92.61 E-value=2.8 Score=37.56 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++.++++..+.. +.. .....++++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+.++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~-~~g--~~~~~~~i~~i~~~~-~~pv~~--~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGA-KAG--KPVNLELIEAIVKAV-DIPVQV--GGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcc-ccC--CcccHHHHHHHHHHC-CCCEEE--cCCcCCHHHHHHHHHcCCCEEEEC
Confidence 46777888888899999999876531 111 124466777776653 445443 566678899999999999998776
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee------eeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI------MLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~------IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
-...+. .+...+..+...+ .+.++.++ +-|. ..+..+..+.++.+.+.|++.+.+
T Consensus 104 ~~~l~~-----------~~~l~ei~~~~~~---~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~ 165 (233)
T PRK00748 104 TAAVKN-----------PELVKEACKKFPG---KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIY 165 (233)
T ss_pred chHHhC-----------HHHHHHHHHHhCC---CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 444322 1112222222211 23333332 1233 334455667788888999997666
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.88 Score=43.98 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies 216 (351)
....+.+...|++.|+|-+... +..+..+.+++||+.+|++.|-. .+. .+.+..+.|.++|+|.+-+|+-+
T Consensus 253 K~rl~ll~~aGvdvviLDSSqG------nS~~qiemik~iK~~yP~l~Via--GNV-VT~~qa~nLI~aGaDgLrVGMGs 323 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQG------NSIYQLEMIKYIKETYPDLQIIA--GNV-VTKEQAANLIAAGADGLRVGMGS 323 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCC------cchhHHHHHHHHHhhCCCceeec--cce-eeHHHHHHHHHccCceeEecccc
Confidence 4455566788999999965443 23688999999999999987632 222 48899999999999999887766
Q ss_pred hHH-H-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 217 VKR-L-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 217 ~~~-~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.+- . .+.+.......-.+.+..+.+++ .|+.+-++- | -++..++.+. ..+|.+.+..+.+|
T Consensus 324 GSiCiTqevma~GrpQ~TAVy~va~~A~q--~gvpviADG--G-iq~~Ghi~KA----l~lGAstVMmG~lL 386 (503)
T KOG2550|consen 324 GSICITQKVMACGRPQGTAVYKVAEFANQ--FGVPCIADG--G-IQNVGHVVKA----LGLGASTVMMGGLL 386 (503)
T ss_pred CceeeeceeeeccCCcccchhhHHHHHHh--cCCceeecC--C-cCccchhHhh----hhcCchhheeccee
Confidence 443 1 12221011233457788888888 888865542 1 1344455443 35777777666555
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=5.5 Score=35.88 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++.+++..-+.. . .+.....+.++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+.++
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~-~--~~~~~~~~~i~~i~~~~-~~~l~v--~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA-F--EGERKNAEAIEKIIEAV-GVPVQL--GGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh-h--cCCcccHHHHHHHHHHc-CCcEEE--cCCcCCHHHHHHHHHcCCCEEEEC
Confidence 35677788888899999988543311 1 11234455666666543 444443 556668899999999999999887
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee----e--eeC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI----M--LGL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~----I--vGl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
-+..++ .+.+.+..+.... -.+.++.++ + -|. .++..+..+.++.+.+.|++.+.+.
T Consensus 106 s~~~~~-----------~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 106 TAAVEN-----------PEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred hHHhhC-----------hHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 544321 1112222222211 112222222 1 233 2333356677777788999988774
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.59 Score=40.12 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++++++.+.|++.|.|- .+. .+.+.++++.++...+.+.+++ .++ ++.+.+..+++.|+|.|++|-
T Consensus 91 ee~~ea~~~g~d~I~lD-----~~~---~~~~~~~v~~l~~~~~~v~ie~--SGG-I~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLD-----NMS---PEDLKEAVEELRELNPRVKIEA--SGG-ITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEE-----S-C---HHHHHHHHHHHHHHTTTSEEEE--ESS-SSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEec-----CcC---HHHHHHHHHHHhhcCCcEEEEE--ECC-CCHHHHHHHHhcCCCEEEcCh
Confidence 45666677899999883 233 4789999999988888888876 344 388999999999999998763
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.48 E-value=5 Score=37.32 Aligned_cols=136 Identities=10% Similarity=0.091 Sum_probs=79.6
Q ss_pred CCchhHHHHHHHHHhCC-----CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh--CCCcEEEEeecCCCCCHHHHHHHH
Q 018731 131 PDPMEPENTAKAIASWG-----VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPDIMVECLTSDFRGDLRAVETLV 203 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G-----~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~--~p~i~i~~~~~~~~~~~e~l~~L~ 203 (351)
.+.++-.++++.+.+.| +++|-+++ +.. ....++.+.+... .++ +... ...+.+-++...
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~~---~d~~~v~~~~~~~~~~~~--v~~~---~r~~~~die~A~ 84 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YTE---KDREAVEACLDRGYKFPE--VTGW---IRANKEDLKLVK 84 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecC-----cCh---HHHHHHHHHHHcCCCCCE--EEEE---ecCCHHHHHHHH
Confidence 35677788999999999 99987732 221 3444444444332 233 3322 112567789999
Q ss_pred HcCCCeeecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC-CCH-----HHHHHHHHHHHhC
Q 018731 204 HSGLDVFAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESD-----DDLKEAMADLRSI 275 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg-Et~-----e~~~~~l~~l~~l 275 (351)
++|++.+.+.+-+.+... +.++ .+....+...+.++.+++ .|+.+..++ -|-. .+. +-+.+.++.+.+.
T Consensus 85 ~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~--~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~ 161 (279)
T cd07947 85 EMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALD--HGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKES 161 (279)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHH--CCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHC
Confidence 999999988664444432 2222 112345556667777888 888766554 2221 111 1234455555668
Q ss_pred CCC-EEee
Q 018731 276 DVD-ILTL 282 (351)
Q Consensus 276 g~d-~i~i 282 (351)
|++ .+.+
T Consensus 162 G~~~~i~l 169 (279)
T cd07947 162 GIPVKIRL 169 (279)
T ss_pred CCCEEEEe
Confidence 998 5766
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=92.43 E-value=3.1 Score=37.21 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++.+++..-+.. +.. ...-.++++.+++.. ++.+. ..++..+.+.++.+.++|++.+.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~~--~~~~~~~i~~i~~~~-~~pv~--~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KGG--EPVNLELIEEIVKAV-GIPVQ--VGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-ccC--CCCCHHHHHHHHHhc-CCCEE--EeCCcCCHHHHHHHHHcCCCEEEE
Confidence 457788888888899999998754431 111 123456777777753 34443 355666889999999999999877
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee------eC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML------GL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv------Gl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+-..+.+ .+...+..+...+ .-+.+..++-. |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 102 gs~~l~d-----------p~~~~~i~~~~g~--~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 102 GTAAVKN-----------PELVKELLKEYGG--ERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CchHHhC-----------hHHHHHHHHHcCC--ceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 6443321 1112222222111 12223333221 21 2344566677888889999988774
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=92.35 E-value=6.6 Score=33.69 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=78.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEE--EeecC----CCCCHHHHHHHH
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVE--CLTSD----FRGDLRAVETLV 203 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~--~~~~~----~~~~~e~l~~L~ 203 (351)
+.+.+.+.++.+.+.|++.+.++| ++++.+++..++ +.+- +..+. .....+.++..+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 567788889999999999988865 233333333222 3332 22221 111247788889
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhC-CCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSK-KGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~-~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
++|.|.+.+.. ..+.. +..+.+...+.++.+.+.. .++.+....+.+.--+.+++.+..+.+.+.|++.+..
T Consensus 76 ~~Gad~i~v~~----~~~~~---~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVVI----NIGSL---KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEec----cHHHH---hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999986532 22211 1223566666666666521 3787766666543336777887777778889998776
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.98 Score=43.65 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCC----CCCcHHHHHHHHHHHHHhCCCcEEEEeec-----CCC-CC----
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTS-----DFR-GD---- 195 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l----~~~~~~~~~~li~~ik~~~p~i~i~~~~~-----~~~-~~---- 195 (351)
++..++.+-+++.+.+.|+-.+-+-||-..+- -+ ++=++-++++|+..|+..+..+-. ++. -.
T Consensus 24 Rmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLn---EDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvV 100 (472)
T COG5016 24 RMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLN---EDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVV 100 (472)
T ss_pred HHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhc---CCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHH
Confidence 35678888889999999999887777653111 11 223456777887776643321110 110 01
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
+..+++..+.|+|.+-+ +|.++ +......+++.+++ .|..+...+-+-. -.|.+-+.+..+.+.
T Consensus 101 e~Fv~ka~~nGidvfRi----FDAlN--------D~RNl~~ai~a~kk--~G~h~q~~i~YT~sPvHt~e~yv~~akel~ 166 (472)
T COG5016 101 EKFVEKAAENGIDVFRI----FDALN--------DVRNLKTAIKAAKK--HGAHVQGTISYTTSPVHTLEYYVELAKELL 166 (472)
T ss_pred HHHHHHHHhcCCcEEEe----chhcc--------chhHHHHHHHHHHh--cCceeEEEEEeccCCcccHHHHHHHHHHHH
Confidence 45667777788887733 23322 22223344555666 6776655554444 688899999999999
Q ss_pred hCCCCEEeee
Q 018731 274 SIDVDILTLG 283 (351)
Q Consensus 274 ~lg~d~i~i~ 283 (351)
++|+|+|.+.
T Consensus 167 ~~g~DSIciK 176 (472)
T COG5016 167 EMGVDSICIK 176 (472)
T ss_pred HcCCCEEEee
Confidence 9999988874
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.8 Score=38.37 Aligned_cols=76 Identities=21% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
..++.+.+.|++.+.++=-|.+- ..-+.+++.+.++.+.+.-.| ...+|+|.|.+.++..+.++.+.++|
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCccHHHHHHHHHHHHHhC
Confidence 56667777788887653222211 123666666666666553223 23456666546677777778888888
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
+|.+.+
T Consensus 100 adav~~ 105 (296)
T TIGR03249 100 ADGYLL 105 (296)
T ss_pred CCEEEE
Confidence 887655
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=92.26 E-value=6 Score=35.36 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=83.2
Q ss_pred HHHHHHHhCCCcEEEE--eccCCCCCC-----CCcHHHHHHHHHHHHHhCCCc--EEEE-eecC-CCCCHHHHHHHHHcC
Q 018731 138 NTAKAIASWGVDYIVL--TSVDRDDIP-----DGGSGHFARTVKAMKKQKPDI--MVEC-LTSD-FRGDLRAVETLVHSG 206 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~l--tgg~~~~l~-----~~~~~~~~~li~~ik~~~p~i--~i~~-~~~~-~~~~~e~l~~L~~aG 206 (351)
+.++.+...+++-+.+ .|.+ +.+. +...+.+...++.+++....+ +|.+ ++-+ .....+.++.|.+..
T Consensus 101 ~~~eklk~~~vdvvsLDfvgDn-~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~ 179 (275)
T COG1856 101 SDLEKLKEELVDVVSLDFVGDN-DVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYE 179 (275)
T ss_pred HHHHHHHHhcCcEEEEeecCCh-HHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCC
Confidence 3455566667776644 2322 1111 122456777788888763222 1221 1111 123468899999999
Q ss_pred CCeeecch--hc-hHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 207 LDVFAHNI--ET-VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 207 ~~~i~~~i--es-~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.|.+-+.+ -+ ..+|.. . |..+.++++++++.|++.|+| .+..+-|=-.||..-. .=.++..+|+|.+++
T Consensus 180 ~DalVl~vliPtpGtkm~~-~--~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk---~d~~av~~gVd~It~ 251 (275)
T COG1856 180 PDALVLVVLIPTPGTKMGN-S--PPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVK---LDKEAVLAGVDRITF 251 (275)
T ss_pred CCeEEEEEEecCCchhccC-C--CCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHH---HHHHHHHcCCceeec
Confidence 99876542 22 223322 2 456999999999999999988 6666665544665444 445667899999887
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.6 Score=38.58 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=82.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc--EEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i--~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+...+.++++.+.+.|++.+.+-=-+....++ ..-=.++++.|++. +++ .+++.+.+ ....++.++++|.+.
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn--~~~g~~~i~~i~~~-~~~~~DvHLMv~~---P~~~i~~~~~~g~~~ 83 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN--LTFGPDIIKAIRKI-TDLPLDVHLMVEN---PERYIEEFAEAGADY 83 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS--B-B-HHHHHHHHTT-SSSEEEEEEESSS---GGGHHHHHHHHT-SE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCc--ccCCHHHHHHHhhc-CCCcEEEEeeecc---HHHHHHHHHhcCCCE
Confidence 45567888899999999987652222211232 11224677778775 343 45555432 347899999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC-
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP- 288 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P- 288 (351)
|++.+|+.+. . .+.++.+++ .|+++ ++.+..+...+.+.. ++ + .+|.+.++ ...|
T Consensus 84 i~~H~E~~~~-----------~---~~~i~~ik~--~g~k~--GialnP~T~~~~~~~---~l-~-~vD~VlvM-sV~PG 139 (201)
T PF00834_consen 84 ITFHAEATED-----------P---KETIKYIKE--AGIKA--GIALNPETPVEELEP---YL-D-QVDMVLVM-SVEPG 139 (201)
T ss_dssp EEEEGGGTTT-----------H---HHHHHHHHH--TTSEE--EEEE-TTS-GGGGTT---TG-C-CSSEEEEE-SS-TT
T ss_pred EEEcccchhC-----------H---HHHHHHHHH--hCCCE--EEEEECCCCchHHHH---Hh-h-hcCEEEEE-EecCC
Confidence 9998885322 2 245567777 88864 444433333333322 22 2 58888886 3356
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcCc
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIGF 316 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G~ 316 (351)
...+. -..-.-+...+++++..+.|+
T Consensus 140 ~~Gq~--f~~~~~~KI~~l~~~~~~~~~ 165 (201)
T PF00834_consen 140 FGGQK--FIPEVLEKIRELRKLIPENGL 165 (201)
T ss_dssp TSSB----HGGHHHHHHHHHHHHHHHTC
T ss_pred CCccc--ccHHHHHHHHHHHHHHHhcCC
Confidence 22220 011122344456666666453
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.2 Score=42.69 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=65.2
Q ss_pred EEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE--EEeeeeeCCCCHH
Q 018731 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT--KSSIMLGLGESDD 263 (351)
Q Consensus 186 ~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v--~~~~IvGlgEt~e 263 (351)
+.+.|.+ +.+.+....++|.|.|++|.....-..+. ...+.+++.+.++.+++ .|.++ .++..+ +.+..+
T Consensus 8 ell~pag--~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~--~gkk~~V~~N~~~-~~~~~~ 79 (347)
T COG0826 8 ELLAPAG--NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHS--AGKKVYVAVNTLL-HNDELE 79 (347)
T ss_pred eeecCCC--CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHH--cCCeEEEEecccc-ccchhh
Confidence 4444543 67889999999999999986522211111 14789999999999999 88863 334333 366677
Q ss_pred HHHHHHHHHHhCCCCEEeee
Q 018731 264 DLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 264 ~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+.+.++.+.++|+|-+-+.
T Consensus 80 ~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 80 TLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 78999999999999987664
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=7.9 Score=34.47 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++..+.++.+.+.|++-|=+|--. +.-.+.++.+++.+|++.|-+ +..++.+.++...++|.+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~---------~~~~~~I~~l~~~~p~~~IGA---GTVl~~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRT---------PAALEAIRLIAKEVPEALIGA---GTVLNPEQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---------ccHHHHHHHHHHHCCCCEEEE---eeccCHHHHHHHHHcCCCEE
Confidence 357888999999999999988776211 245678888888888876654 33458899999999999976
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=9.5 Score=34.95 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|+++++++.-+..... ...-.++++.+.+. .++.+.+ .++..+.+.++.+.++|++.+-+
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---~~~n~~~i~~i~~~-~~~pv~~--gGGi~s~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVLDIDASKRG---SEPNYELIENLASE-CFMPLCY--GGGIKTLEQAKKIFSLGVEKVSI 102 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCC---CcccHHHHHHHHHh-CCCCEEE--CCCCCCHHHHHHHHHCCCCEEEE
Confidence 346778899999999999999876643111 12335667677664 3455543 44555788888889999999987
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC------------CCCHHHHHHHHHHHHhCCCCEE
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL------------GESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl------------gEt~e~~~~~l~~l~~lg~d~i 280 (351)
|-.... +.+-+.+.++...+ .-+.++.++--|. ..+..+..+.++.+.+.|++.+
T Consensus 103 gs~~~~-----------~~~~~~~~~~~~~~--~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~i 169 (258)
T PRK01033 103 NTAALE-----------DPDLITEAAERFGS--QSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEI 169 (258)
T ss_pred ChHHhc-----------CHHHHHHHHHHhCC--CcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEE
Confidence 733221 11222222222211 1244555543331 1234456777888889999987
Q ss_pred eee
Q 018731 281 TLG 283 (351)
Q Consensus 281 ~i~ 283 (351)
.+.
T Consensus 170 i~~ 172 (258)
T PRK01033 170 LLN 172 (258)
T ss_pred EEE
Confidence 774
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=9 Score=34.60 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.+......|...|.+= -++|-..-..+++..+.+.++. .+++++. .++++++...+...+.+++-.
T Consensus 25 d~v~aA~~a~~aGAdgITvH--lReDrRHI~d~Dv~~L~~~~~~---~lNlE~a-----~~~em~~ia~~~kP~~vtLVP 94 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVH--LREDRRHIRDRDVRLLRETLKT---ELNLEMA-----ATEEMLDIALEVKPHQVTLVP 94 (239)
T ss_pred CHHHHHHHHHHcCCCEEEec--CCCCcccCCHHHHHHHHHhcCC---CEEeccC-----CCHHHHHHHHHCCCCEEEECC
Confidence 34555666677899988761 1111111112455554444432 4677653 278999999999999999877
Q ss_pred hchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcc
Q 018731 215 ETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL 293 (351)
Q Consensus 215 es~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~ 293 (351)
|.-.+.. ..--+-....+..-..++.+++ .||.|+..+ .-+. +.++..+++|+|.|-++ |.-+.
T Consensus 95 E~r~E~TTegGldv~~~~~~l~~~i~~L~~--~gIrVSLFi----dP~~----~qi~~A~~~GAd~VELh-----TG~yA 159 (239)
T PRK05265 95 EKREELTTEGGLDVAGQFDKLKPAIARLKD--AGIRVSLFI----DPDP----EQIEAAAEVGADRIELH-----TGPYA 159 (239)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHH--CCCEEEEEe----CCCH----HHHHHHHHhCcCEEEEe-----chhhh
Confidence 6654432 1000012356677788889999 999865543 2223 44567788999999884 21110
Q ss_pred cccCCCCHHHHHHHH---HHHHhcCcce
Q 018731 294 TVKEYVTPEKFDFWK---AYGESIGFRY 318 (351)
Q Consensus 294 ~~~~~v~~~e~~~~~---~~~~~~G~~~ 318 (351)
.........++++++ +++..+|..-
T Consensus 160 ~a~~~~~~~el~~~~~aa~~a~~lGL~V 187 (239)
T PRK05265 160 DAKTEAEAAELERIAKAAKLAASLGLGV 187 (239)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHcCCEE
Confidence 000112244566554 4556677653
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=91.99 E-value=9.6 Score=39.65 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-Cc---EEEEeecCCCCCHHHHHHHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DI---MVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i---~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++-+++++.+.+.|++.|=++. | .....+++.+..+.+.++...+ +. .|..+.. ...+.++...++
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGf--P-~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~r---a~~~dId~A~~a 177 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGF--P-IASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSR---CNKKDIDAAWEA 177 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC--c-CCCccHHHHHHHHHHhcccCCCccccceeeeeehh---ccHHhHHHHHHH
Confidence 36778889999999999999987743 2 1221123333333332221111 11 1222221 245566666666
Q ss_pred C--C--CeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeCCCCHHHHHHHHHHHHhCCCC
Q 018731 206 G--L--DVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 206 G--~--~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGlgEt~e~~~~~l~~l~~lg~d 278 (351)
+ . .+|.+-+-+.+-. ...++ .+....+...+.++.+++ .|.. +..+..-+.--+.+.+.+.++.+.+.|++
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~--~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~ 255 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARS--LGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGAT 255 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCceEEEecccCCCCCHHHHHHHHHHHHHcCCC
Confidence 3 2 2565555444432 23232 012234445567777787 7763 44443333334467778899999999999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 256 ~I~L 259 (632)
T PLN02321 256 TLNI 259 (632)
T ss_pred EEEe
Confidence 8777
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=91.98 E-value=5.5 Score=34.64 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=75.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
++++..+.++.+.+.|++.|-++--+ ....+.++.+++.+|++.+.+-+ ..+.+.++...++|.+.+.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~---------~~~~~~i~~l~~~~~~~~iGag~---v~~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRT---------PGALEAIRALRKEFPEALIGAGT---VLTPEQADAAIAAGAQFIV 81 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCCCCEEEEEe---CCCHHHHHHHHHcCCCEEE
Confidence 46788889999999999998886322 12455888888888776665422 2478999999999999884
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.. ..+ . +.++.+++ .|+ .+|+|.. |.+|+.+. .+.|+|.+.++
T Consensus 82 ~p--------------~~~-~---~~~~~~~~--~~~----~~i~gv~-t~~e~~~A----~~~Gad~i~~~ 124 (190)
T cd00452 82 SP--------------GLD-P---EVVKAANR--AGI----PLLPGVA-TPTEIMQA----LELGADIVKLF 124 (190)
T ss_pred cC--------------CCC-H---HHHHHHHH--cCC----cEECCcC-CHHHHHHH----HHCCCCEEEEc
Confidence 21 112 1 34444455 454 3466754 77765544 35899988874
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=9.3 Score=34.47 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=74.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+...+.++++.+.. |++.+.+-=-+....++- .-=.++++.+++.. -.+.++..+.+ .+..++.++++|.+.|
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~--tfg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~i 86 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNL--TLSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFI 86 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCCCc--ccCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 34466677777766 888876632222112321 11134666777641 12455554432 3578999999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
++..|+... +..+.++.+++ .|++ +++.+..+-..+.+...+. .+|.|.++ -..|
T Consensus 87 t~H~Ea~~~-------------~~~~~i~~Ik~--~G~k--aGlalnP~T~~~~l~~~l~-----~vD~VLvM-sV~P 141 (229)
T PRK09722 87 TLHPETING-------------QAFRLIDEIRR--AGMK--VGLVLNPETPVESIKYYIH-----LLDKITVM-TVDP 141 (229)
T ss_pred EECccCCcc-------------hHHHHHHHHHH--cCCC--EEEEeCCCCCHHHHHHHHH-----hcCEEEEE-EEcC
Confidence 998885321 12356667777 8875 4555554545555554444 35777775 3345
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=91.88 E-value=4.1 Score=39.00 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEe-ecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECL-TSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~-~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++++.+.++.+.+.|+..|+|..-..-..| +.+.++++.+++.. |++.+..- +++.-+.-.-.-...++|++
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P----~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLP----EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCH----HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCC
Confidence 45788899999999999999999543332233 78999999999876 56655432 33332233333344579999
Q ss_pred eeecc
Q 018731 209 VFAHN 213 (351)
Q Consensus 209 ~i~~~ 213 (351)
+|-.+
T Consensus 217 ~iD~S 221 (337)
T PRK08195 217 RIDGS 221 (337)
T ss_pred EEEec
Confidence 88544
|
|
| >COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.80 E-value=5.1 Score=37.52 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=68.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCC--CCCCCcHHHHHHHHHHHHHhCCC-cEEEE-eecCCCCC----HHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRD--DIPDGGSGHFARTVKAMKKQKPD-IMVEC-LTSDFRGD----LRAVETL 202 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~--~l~~~~~~~~~~li~~ik~~~p~-i~i~~-~~~~~~~~----~e~l~~L 202 (351)
.+..++.+.++.+.+.|++.|++..|+++ +.+.....+-.++++.+|....+ +.|.+ ..|...-. ...+..|
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~l 168 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRL 168 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHH
Confidence 35678899999999999999999999874 23321124667889999876545 44442 23443311 2233333
Q ss_pred H---HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 203 V---HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 203 ~---~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
+ ++|.|.+ ..+ .-.+.+.+.+..+.+++ +|+ ..-++.|+
T Consensus 169 krKv~aGAd~~------iTQ-------~~fd~e~~~~~~~~~~~--~g~--~~pI~~Gi 210 (291)
T COG0685 169 KRKVDAGADFF------ITQ-------FFFDVEAFERFAERVRA--AGI--DIPIIPGI 210 (291)
T ss_pred HHHHhcchHHH------HHH-------HccCHHHHHHHHHHHHh--cCC--CCCeeecc
Confidence 3 4555543 111 24577777777778887 776 34455555
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=91.79 E-value=6.6 Score=36.60 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHHHHc-CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHS-GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~a-G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~ 274 (351)
..++.+.+. |++.+.++--|.+- ..-+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+.+++
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHH
Confidence 456666666 77776543222211 123555666666655543233 24556666 4566667777777777
Q ss_pred CCCCEEee
Q 018731 275 IDVDILTL 282 (351)
Q Consensus 275 lg~d~i~i 282 (351)
.|+|.+.+
T Consensus 95 ~Gad~v~~ 102 (288)
T cd00954 95 LGYDAISA 102 (288)
T ss_pred cCCCEEEE
Confidence 77776655
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=91.76 E-value=9.1 Score=34.05 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=76.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++..+.++++++.+.|++.+.+-=-+....++ ..-=.++++.+++.. ..+.++....+ .+..++.++++|.+.|
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN--~tfG~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~I 85 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTSFINN--ITFGMKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGWI 85 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc--cccCHHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 34567788888999999988763222211232 111135666676642 12455554432 3578999999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
++..|+.+. ..+.++.+|+ .|++ +++-+..+-..+.+...+. .+|.+.++ -..|
T Consensus 86 t~H~Ea~~~--------------~~~~l~~Ik~--~G~k--~GlAlnP~Tp~~~i~~~l~-----~vD~VlvM-sV~P 139 (210)
T PRK08005 86 FIHAESVQN--------------PSEILADIRA--IGAK--AGLALNPATPLLPYRYLAL-----QLDALMIM-TSEP 139 (210)
T ss_pred EEcccCccC--------------HHHHHHHHHH--cCCc--EEEEECCCCCHHHHHHHHH-----hcCEEEEE-EecC
Confidence 998885321 2346667777 8885 4555555555555554443 46777775 3345
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.73 E-value=11 Score=35.09 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=84.1
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.+.+...++.+.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|+++|-+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~--~~~~g~~~~~~~~~~~A~~~-~VPV~l-HLDHg~~~e~i~~Ai~~GftSVM~ 103 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGT--FSYAGTEYLLAIVSAAAKQY-HHPLAL-HLDHHEKFDDIAQKVRSGVRSVMI 103 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhH--HhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEEe
Confidence 45666677777777777665443322 22234577888888887764 455533 334434789999999999999865
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEEe
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i~ 281 (351)
.--.++ + ..+.+...+.++.++. .|+.|.+- -|-|- +. . .-+..+..+|+++.|+|.+.
T Consensus 104 DgS~l~-~-------eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 173 (284)
T PRK09195 104 DGSHLP-F-------AQNISLVKEVVDFCHR--FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLA 173 (284)
T ss_pred CCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEe
Confidence 321111 1 1133344577788888 88876553 34333 11 0 12456788899999999877
Q ss_pred e
Q 018731 282 L 282 (351)
Q Consensus 282 i 282 (351)
+
T Consensus 174 v 174 (284)
T PRK09195 174 V 174 (284)
T ss_pred e
Confidence 6
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.64 E-value=7.5 Score=38.12 Aligned_cols=134 Identities=18% Similarity=0.214 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+-.+.++.+.+.|++-|++-..++. ...+.++++.+++.+|++.+-+ .+. .+.+....+.++|+|.|.+++
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~vi~--g~V-~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDLIA--GNI-VTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcEEE--Eec-CCHHHHHHHHHcCCCEEEECC
Confidence 3457788888999999998554432 2578899999999988866532 222 478999999999999998776
Q ss_pred hchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
....- ..+.+.+-+ ..+......-+.+++ .++.+-++ |=-.+.+|+.+.+ .+|.+.+.++..+
T Consensus 224 g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~--~~vpVIAd---GGI~~~~Di~KAL----alGA~aVmvGs~~ 288 (404)
T PRK06843 224 GPGSICTTRIVAGVGVPQITAICDVYEVCKN--TNICIIAD---GGIRFSGDVVKAI----AAGADSVMIGNLF 288 (404)
T ss_pred CCCcCCcceeecCCCCChHHHHHHHHHHHhh--cCCeEEEe---CCCCCHHHHHHHH----HcCCCEEEEccee
Confidence 44321 112221111 133333333333444 46553222 2125677776665 4899998887554
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.64 E-value=8.6 Score=35.89 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=77.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEeecCCCCCHHHHHHHHHc--
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHS-- 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~---p~i~i~~~~~~~~~~~e~l~~L~~a-- 205 (351)
.+.++-+++++.+.+.|+++|-++ . |.+. +.-.+.++.+.+.. ++..+.++.+. ..+.++...++
T Consensus 20 ~s~~~Ki~ia~~L~~~Gv~~IE~g--f-P~~~----~~e~e~~~~i~~~~~~~~~~~~~al~r~---~~~die~a~~~~~ 89 (284)
T cd07942 20 MSVEQKLRFFKLLVKIGFKEIEVG--F-PSAS----QTDFDFVRELIEEDLIPDDVTIQVLTQA---REDLIERTFEALR 89 (284)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----HHHHHHHHHHHHccCCCCCCEEEEEcCC---ChhhHHHHHHHhC
Confidence 567888899999999999999874 3 3344 23346677774431 35566666553 23336667766
Q ss_pred CCC--eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCe-EEEeeeeeC-C----CC-HHHHHHHHHHHHh
Q 018731 206 GLD--VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL-G----ES-DDDLKEAMADLRS 274 (351)
Q Consensus 206 G~~--~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~IvGl-g----Et-~e~~~~~l~~l~~ 274 (351)
|++ .+.+.+-+.+.. .+.++ .+....+...+.++.+++ .|+. +++.+-+-+ + .+ .+.+.+.++.+.+
T Consensus 90 ~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~--~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~ 167 (284)
T cd07942 90 GAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKE--LAAKYPETDWRFEYSPESFSDTELDFALEVCEAVID 167 (284)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--hcccccCceEEEEECCccCCCCCHHHHHHHHHHHHH
Confidence 665 566655444443 22232 112234445556777777 7765 233333333 4 34 4666777777766
Q ss_pred C
Q 018731 275 I 275 (351)
Q Consensus 275 l 275 (351)
.
T Consensus 168 ~ 168 (284)
T cd07942 168 V 168 (284)
T ss_pred h
Confidence 6
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.6 Score=43.39 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=64.6
Q ss_pred EEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeCCCCHH
Q 018731 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGLGESDD 263 (351)
Q Consensus 186 ~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGlgEt~e 263 (351)
+.+.|.+ +.+.++...++|.|.|++|.+.+....+ . ...+.++..++++.+++ .|.++... .++. .+..+
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~-~--~~f~~edl~eav~~ah~--~g~kvyvt~n~i~~-e~el~ 76 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVR-N--NEFNHENLALGINEAHA--LGKKFYVVVNIAPH-NAKLK 76 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhh-c--cCCCHHHHHHHHHHHHH--cCCEEEEEecCcCC-HHHHH
Confidence 3444433 7899999999999999999877543211 1 24688999999999999 88875443 3331 44456
Q ss_pred HHHHHHHHHHhCCCCEEeee
Q 018731 264 DLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 264 ~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+.+.++.+.++|+|-+-+.
T Consensus 77 ~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 77 TFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHhCCCCEEEEc
Confidence 67777888889999977664
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=11 Score=34.34 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+...|++++++.+-+...-. ...-.++++.+++.. ++.+. ..++..+.+.++.+.++|++.+.+
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~---~~~~~~~i~~i~~~~-~ipv~--~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEG---RDTMLDVVERVAEQV-FIPLT--VGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccc---CcchHHHHHHHHHhC-CCCEE--eeCCCCCHHHHHHHHHcCCCEEEE
Confidence 346677788888899999999876642111 135567787887753 44443 356667889999999999999987
Q ss_pred ch
Q 018731 213 NI 214 (351)
Q Consensus 213 ~i 214 (351)
+-
T Consensus 103 gt 104 (253)
T PRK02083 103 NS 104 (253)
T ss_pred Ch
Confidence 63
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.6 Score=39.15 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=66.7
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEEEeecCC--CCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHH
Q 018731 164 GGSGHFARTVKAMKKQKPDIMVECLTSDF--RGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHA 241 (351)
Q Consensus 164 ~~~~~~~~li~~ik~~~p~i~i~~~~~~~--~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~ 241 (351)
.+.+.+.+.++..++..++..+-+..... ..-.+.++.+.++|+|.|-+|+-+.+... .++-..+.+...+.++.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~--~~~~~~~~~~~~eiv~~v 157 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG--GRQLGQDPEAVANLLKAV 157 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccCHHHHHHHHHHH
Confidence 34567766666555432343333211111 00135677888889999887764432211 000123566677777777
Q ss_pred HHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 242 KLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 242 ~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
++.. ++. +++.+ +.+.+++.+.++.+.+.|+|.+.+..
T Consensus 158 r~~~-~~p----v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 158 KAAV-DIP----LLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHcc-CCC----EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 7621 333 33333 56788999999999999999988753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=91.36 E-value=5.6 Score=36.98 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.++=-+.+- ..-+.+++.+.++.+.+...| ...+++|. ..+.++..+..+.+.+.
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~-------~~Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~ 92 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGES-------PTLSHEEHKKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDV 92 (285)
T ss_pred HHHHHHHHcCCCEEEECccCccc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHc
Confidence 55666677788887653222211 123666666776666653233 23466777 45677777888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 93 Gad~v~v 99 (285)
T TIGR00674 93 GADGFLV 99 (285)
T ss_pred CCCEEEE
Confidence 8887666
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=3.4 Score=39.26 Aligned_cols=130 Identities=21% Similarity=0.198 Sum_probs=83.0
Q ss_pred HHHHHHh--CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhc
Q 018731 139 TAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 139 ~~~~~~~--~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies 216 (351)
.++++.+ .|++.|++-..+. ..+.+.+.++.||+.+|++.|-+ .+ ..+.+.++.|.++|.|.+-+|+=.
T Consensus 112 r~~~L~~~~~g~D~iviD~AhG------hs~~~i~~ik~ik~~~P~~~vIa--GN-V~T~e~a~~Li~aGAD~vKVGIGp 182 (346)
T PRK05096 112 KTKQILALSPALNFICIDVANG------YSEHFVQFVAKAREAWPDKTICA--GN-VVTGEMVEELILSGADIVKVGIGP 182 (346)
T ss_pred HHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHHhCCCCcEEE--ec-ccCHHHHHHHHHcCCCEEEEcccC
Confidence 3445554 5899999854443 24789999999999999876543 22 248899999999999998776644
Q ss_pred hHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 217 VKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 217 ~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
..- ..+.+.+-+ ....-+.+.-+.+++ .|..+-+|-=+ .+.-|+.+.+ ..|.|.+.++.+|
T Consensus 183 GSiCtTr~vtGvG~PQltAV~~~a~~a~~--~gvpiIADGGi---~~sGDI~KAl----aaGAd~VMlGsll 245 (346)
T PRK05096 183 GSVCTTRVKTGVGYPQLSAVIECADAAHG--LGGQIVSDGGC---TVPGDVAKAF----GGGADFVMLGGML 245 (346)
T ss_pred CccccCccccccChhHHHHHHHHHHHHHH--cCCCEEecCCc---ccccHHHHHH----HcCCCEEEeChhh
Confidence 332 122222111 134455666666777 77765554211 2334555443 4899999987666
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.07 E-value=13 Score=34.66 Aligned_cols=137 Identities=11% Similarity=0.077 Sum_probs=84.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~--~~~~~~~~~~~~~~~~a~~~-~VPVal-HLDHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGT--FKHIALEEIYALCSAYSTTY-NMPLAL-HLDHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcch--hhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCeEe
Confidence 356666777777777777555443322 22234677888888887764 455543 33433478899999999999886
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...+.++.++. .|+.|.+- -|-|- +. . .-+-.+..+|+++.|+|.+
T Consensus 103 ~DgS~lp-~-------eeNi~~T~evv~~Ah~--~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~L 172 (286)
T PRK12738 103 IDGSHFP-F-------AENVKLVKSVVDFCHS--QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSL 172 (286)
T ss_pred ecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEE
Confidence 5311111 1 1133344577778888 78876554 34333 11 1 1155778889999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 Av 174 (286)
T PRK12738 173 AV 174 (286)
T ss_pred Ee
Confidence 76
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=6.5 Score=36.64 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.++--+. +. ..-+.+++.+.++.+.+...| ...+++|. +.+.++..+.++.++++
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~G-E~------~~ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 95 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTG-ES------PTLTHEEHEELIRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKA 95 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCC-cc------ccCCHHHHHHHHHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHc
Confidence 456666667777776432221 11 123566666666666553222 23456777 45667777777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 96 G~d~v~~ 102 (292)
T PRK03170 96 GADGALV 102 (292)
T ss_pred CCCEEEE
Confidence 7776665
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=90.79 E-value=5.6 Score=38.21 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
-.+.++.+.+.|++.|++-+.+. . .++..+.++.||+.+|++.|-+- + ..+.+.++.|.++|.|.|-+|+=
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g--~----s~~~~~~ik~ik~~~~~~~viaG--N-V~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHG--H----SEHVIDMIKKIKKKFPDVPVIAG--N-VVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SST--T----SHHHHHHHHHHHHHSTTSEEEEE--E-E-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHHHcCCCEEEccccCc--c----HHHHHHHHHHHHHhCCCceEEec--c-cCCHHHHHHHHHcCCCEEEEecc
Confidence 35566777888999999865543 1 37899999999999998776441 1 23889999999999999988765
Q ss_pred chHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
...- ..+.+.+- ....--+.+..+.+++ .|+.+-+|-=+ .+.-|+.+.+ ..|.|.+.++.+|
T Consensus 180 pGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~--~~v~iIADGGi---~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 180 PGSICTTREVTGVGVPQLTAVYECAEAARD--YGVPIIADGGI---RTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp SSTTBHHHHHHSBSCTHHHHHHHHHHHHHC--TTSEEEEESS----SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred CCcccccccccccCCcHHHHHHHHHHHhhh--ccCceeecCCc---Ccccceeeee----eecccceeechhh
Confidence 4332 22222211 1244556677777777 78776555311 3555665554 5899999998666
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.8 Score=40.18 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++..+.+.|++.|.+. .++ .+.+.+.++.++...|++.+++ .++. +++.+..+++.|+|.|+.|-
T Consensus 192 leea~~A~~~GaDiI~LD-----n~~---~e~l~~~v~~~~~~~~~~~ieA--sGgI-t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 192 LEEAKNAMNAGADIVMCD-----NMS---VEEIKEVVAYRNANYPHVLLEA--SGNI-TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHHhhccCCCeEEEE--ECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 456666678899977762 222 4788888887766566666665 4454 99999999999999998764
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.9 Score=40.26 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.| |.++ .+.+.+.++.+++..|.+.+++ .++ .+.+.+..+++.|+|.|+.|.
T Consensus 209 l~ea~eal~~gaDiI~L-----Dnm~---~e~vk~av~~~~~~~~~v~iea--SGG-I~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 209 LEQLDEVLAEGAELVLL-----DNFP---VWQTQEAVQRRDARAPTVLLES--SGG-LTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHhccCCCEEEEE--ECC-CCHHHHHHHHhcCCCEEEeCh
Confidence 34566667789988887 3344 4788888888777767777765 444 499999999999999998764
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.70 E-value=14 Score=34.40 Aligned_cols=137 Identities=11% Similarity=0.118 Sum_probs=85.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
..+.+...++++.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~--~~~~g~~~~~~~~~~~a~~~-~VPVal-HLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGT--FSYAGTDYIVAIAEVAARKY-NIPLAL-HLDHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccH--HhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCeEE
Confidence 356667777777777777665444322 22123567888888777654 455533 33433478999999999999886
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...+.++.++. .|+.|.+ +-|-|- ++ + .-+-.+..+|+++.|+|.+
T Consensus 103 iDgS~lp-~-------eeNi~~T~~vv~~Ah~--~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~L 172 (284)
T PRK12737 103 IDGSHLS-F-------EENIAIVKEVVEFCHR--YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSL 172 (284)
T ss_pred ecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEE
Confidence 5311111 1 1234445577888888 7887655 444443 11 1 1145788899999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 Av 174 (284)
T PRK12737 173 AV 174 (284)
T ss_pred ee
Confidence 76
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=90.66 E-value=6.7 Score=35.02 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++++++..-+. ...+ ...-.++++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+-++
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~--~~~g-~~~~~~~i~~i~~~~-~~pi~~--ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDG--AKEG-GPVNLPVIKKIVRET-GVPVQV--GGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCc--cccC-CCCcHHHHHHHHHhc-CCCEEE--eCCcCCHHHHHHHHHcCCCEEEEC
Confidence 4677788888889999998854432 1111 122345666666653 344443 556678999999999999998776
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee------eeC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM------LGL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I------vGl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
....+ +.+...+..+.+.. .-+.++.++- -|. ..+..+..+.++.+.+.|++.+.+.
T Consensus 102 s~~l~-----------d~~~~~~~~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 102 TAAVE-----------NPDLVKELLKEYGP--ERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred hHHhh-----------CHHHHHHHHHHhCC--CcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 43332 12223333333221 1133333432 222 1223455677888889999987763
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=90.64 E-value=7.3 Score=35.98 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~ 274 (351)
.+.++.+.+.|++.+.++--|.+- ..-+.+++.+.++.+.+...| ...+++|. +.+.++..+..+.+.+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~-------~~ls~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEA-------PTLTDEERKEVIEAVVEAVAG---RVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHH
Confidence 356677777788887654222211 123667777777766653222 24467777 5677777788888888
Q ss_pred CCCCEEee
Q 018731 275 IDVDILTL 282 (351)
Q Consensus 275 lg~d~i~i 282 (351)
+|+|.+.+
T Consensus 91 ~Gad~v~v 98 (281)
T cd00408 91 AGADGVLV 98 (281)
T ss_pred cCCCEEEE
Confidence 88887666
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.58 E-value=11 Score=34.81 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc--CCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a--G~~ 208 (351)
.+.+.+.+.+++..+.|+.-|-+.++.+ ...+.+++..+++.+++.. ++.+.+=| .+.+.++.-.++ |.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~---~~eE~~r~~~~v~~l~~~~-~~plsIDT----~~~~v~eaaL~~~~G~~ 93 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA---VEEEPETMEWLVETVQEVV-DVPLCIDS----PNPAAIEAGLKVAKGPP 93 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC---chhHHHHHHHHHHHHHHhC-CCCEEEeC----CCHHHHHHHHHhCCCCC
Confidence 5667788888888899999998876643 2233577888888887653 44443212 155666666665 666
Q ss_pred eee-cchhc--hHHHH---hhh-----------cCCCCCHH----HHHHHHHHHHHhCCCC---eEEEeeeeeC-CCCHH
Q 018731 209 VFA-HNIET--VKRLQ---RIV-----------RDPRAGYE----QSLEVLKHAKLSKKGL---ITKSSIMLGL-GESDD 263 (351)
Q Consensus 209 ~i~-~~ies--~~~~~---~~~-----------r~~~~~~~----~~l~~i~~~~~~~~Gi---~v~~~~IvGl-gEt~e 263 (351)
.|+ ++.+. .+.+. +.. ++...+.+ ...+.++.+.+ .|+ .+-.|-.+|. |-+.+
T Consensus 94 iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~--~GI~~~~IilDPgi~~~~~~~~ 171 (261)
T PRK07535 94 LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADE--YGIPPEDIYIDPLVLPLSAAQD 171 (261)
T ss_pred EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH--cCCCHhHEEEeCCCCcccCChH
Confidence 554 22221 12211 100 00011333 33445566777 899 4777877884 66655
Q ss_pred HH---HHHHHHHHhC
Q 018731 264 DL---KEAMADLRSI 275 (351)
Q Consensus 264 ~~---~~~l~~l~~l 275 (351)
+. .+.++.+++.
T Consensus 172 ~~~~~l~~i~~l~~~ 186 (261)
T PRK07535 172 AGPEVLETIRRIKEL 186 (261)
T ss_pred HHHHHHHHHHHHHHh
Confidence 55 4455555554
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.39 E-value=6.6 Score=34.82 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=75.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++.+..++.+.+.|++-|=+|--. +.-.+.|+.+++.+|+.-|.+ +..++.+.++.+.++|.+-+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~s---------p~a~e~I~~l~~~~p~~lIGA---GTVL~~~q~~~a~~aGa~fi 89 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRT---------PAALEAIRALAKEFPEALIGA---GTVLNPEQARQAIAAGAQFI 89 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC---------CCHHHHHHHHHHhCcccEEcc---ccccCHHHHHHHHHcCCCEE
Confidence 357888999999999999988775332 245788999999888665543 44579999999999999976
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |+.+. +.++.++. .|+.+ |-|. -|.-|+... .++|.+.+-+|
T Consensus 90 -------------Vs-P~~~~----ev~~~a~~--~~ip~----~PG~-~TptEi~~A----le~G~~~lK~F 133 (211)
T COG0800 90 -------------VS-PGLNP----EVAKAANR--YGIPY----IPGV-ATPTEIMAA----LELGASALKFF 133 (211)
T ss_pred -------------EC-CCCCH----HHHHHHHh--CCCcc----cCCC-CCHHHHHHH----HHcChhheeec
Confidence 22 33333 45556666 67653 3442 344454433 35666665553
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=4.1 Score=36.68 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=62.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~--i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
++..+.++++.+...|++.+.+-=-+....++-. .=.+.++++++..|++. ++..+.+ ....++.+.++|.|.
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~--~G~~~v~~lr~~~~~~~lDvHLm~~~---p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLS--FGPPVVKSLRKHLPNTFLDCHLMVSN---PEKWVDDFAKAGASQ 91 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcC--cCHHHHHHHHhcCCCCCEEEEECCCC---HHHHHHHHHHcCCCE
Confidence 4456778888888999998876322222123211 11467778887765643 3443221 356789999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
+++..|+... + ..++++.+++ .|..+..
T Consensus 92 itvH~ea~~~----------~---~~~~l~~ik~--~G~~~gv 119 (228)
T PTZ00170 92 FTFHIEATED----------D---PKAVARKIRE--AGMKVGV 119 (228)
T ss_pred EEEeccCCch----------H---HHHHHHHHHH--CCCeEEE
Confidence 9887665321 1 2356667777 7876543
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=90.30 E-value=9.9 Score=35.57 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.+.|++.+.++=-|.+- ..-+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+...++
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~-------~~Ls~~Er~~l~~~~~~~~~g---~~pvi~gv~~~~t~~ai~~a~~A~~~ 94 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEP-------GSLTLEERKQAIENAIDQIAG---RIPFAPGTGALNHDETLELTKFAEEA 94 (294)
T ss_pred HHHHHHHHcCCCEEEECccCccc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEECCcchHHHHHHHHHHHHHc
Confidence 44555555566665432111111 123555555555554432222 23345555 35555566666666666
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 95 Gad~v~v 101 (294)
T TIGR02313 95 GADAAMV 101 (294)
T ss_pred CCCEEEE
Confidence 6665554
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=90.27 E-value=6.5 Score=36.39 Aligned_cols=127 Identities=11% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEE-eecCCC---CC-HHH---
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP----DGGSGHFARTVKAMKKQKPDIMVEC-LTSDFR---GD-LRA--- 198 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~----~~~~~~~~~li~~ik~~~p~i~i~~-~~~~~~---~~-~e~--- 198 (351)
.+..++...+..+...|++.|...+|+++... ...+++-.++++.+++.++++.|.+ ..|.+. .+ ++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 45667888888888999999986666654211 1234567788888888766666653 234321 12 223
Q ss_pred HHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C-CCHHHHHHHHHHHHhCC
Q 018731 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEAMADLRSID 276 (351)
Q Consensus 199 l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g-Et~e~~~~~l~~l~~lg 276 (351)
++.=.++|.+.+. . ..-++.+...+.++.+++ .|+. .-++.|+ + .+.. .+++++.-.|
T Consensus 150 L~~K~~aGA~f~i------T-------Q~~fd~~~~~~~~~~~~~--~gi~--~PIi~Gi~p~~s~k---~~~~~~~~~G 209 (272)
T TIGR00676 150 LKRKVDAGADYAI------T-------QLFFDNDDYYRFVDRCRA--AGID--VPIIPGIMPITNFK---QLLRFAERCG 209 (272)
T ss_pred HHHHHHcCCCeEe------e-------ccccCHHHHHHHHHHHHH--cCCC--CCEecccCCcCCHH---HHHHHHhccC
Confidence 3344467887541 1 134566777777778877 7764 3566666 3 3333 3444544344
Q ss_pred C
Q 018731 277 V 277 (351)
Q Consensus 277 ~ 277 (351)
+
T Consensus 210 v 210 (272)
T TIGR00676 210 A 210 (272)
T ss_pred C
Confidence 4
|
This protein is an FAD-containing flavoprotein. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=11 Score=38.08 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+..+.++.+.+.|++.|.+...+.. .....+.++.|++.+|++.|-+ +...+.+.++.+.++|+|.|-+++
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a---G~V~t~~~a~~~~~aGad~I~vg~ 311 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA---GNVVTADQAKNLIDAGADGLRIGM 311 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE---CCcCCHHHHHHHHHcCCCEEEECC
Confidence 3367788888999999998654431 1345789999999888766644 223588999999999999997654
Q ss_pred hchH-HHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVK-RLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~-~~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
-... ...+...+-+ .....+.+..+.+++ .|+. +|. | -.|..|+.+.+ .+|.+.+.++..+
T Consensus 312 g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~--~~v~----vIadGG-i~~~~di~kAl----a~GA~~Vm~G~~~ 376 (495)
T PTZ00314 312 GSGSICITQEVCAVGRPQASAVYHVARYARE--RGVP----CIADGG-IKNSGDICKAL----ALGADCVMLGSLL 376 (495)
T ss_pred cCCcccccchhccCCCChHHHHHHHHHHHhh--cCCe----EEecCC-CCCHHHHHHHH----HcCCCEEEECchh
Confidence 3221 1111111111 234444555566666 6765 344 3 25666766654 4899998887555
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=2.3 Score=39.71 Aligned_cols=67 Identities=19% Similarity=0.444 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.|. .+. .+.+.+.++.+++..+.+.+++ .++. +.+.+..+++.|+|.|+.+-
T Consensus 206 leea~eA~~~GaD~I~LD-----n~~---~e~l~~av~~~~~~~~~i~leA--sGGI-t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD-----NMP---VDLMQQAVQLIRQQNPRVKIEA--SGNI-TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHHHHhcCCCeEEEE--ECCC-CHHHHHHHHHcCCCEEEEch
Confidence 455556668899988882 233 4788888888887666776665 4453 89999999999999998764
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.4 Score=37.96 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=58.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.-++.+.++.+.+.|+++++|...+.. . .+.+-..++++...+.. .+.++ ..++..+.+.++.+..+|.|.|+
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs--~-~gr~~~~~vv~r~A~~v-fiPlt--VGGGI~s~eD~~~ll~aGADKVS 101 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS--S-EGRETMLDVVERVAEQV-FIPLT--VGGGIRSVEDARKLLRAGADKVS 101 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc--c-ccchhHHHHHHHHHhhc-eeeeE--ecCCcCCHHHHHHHHHcCCCeee
Confidence 3456788999999999999999766542 2 22367788888887752 34443 35677789999999999999999
Q ss_pred cchhc
Q 018731 212 HNIET 216 (351)
Q Consensus 212 ~~ies 216 (351)
+|-..
T Consensus 102 INsaA 106 (256)
T COG0107 102 INSAA 106 (256)
T ss_pred eChhH
Confidence 97544
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=89.95 E-value=2.4 Score=39.35 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++++++.+.|++.|.|- .++ .+.+.+.++.+++..+++.+++ .++ .+.+.+..+++.|+|.|+.|
T Consensus 198 leea~ea~~~GaDiI~lD-----n~~---~e~l~~~v~~l~~~~~~~~lea--sGG-I~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 198 IEQALTVLQASPDILQLD-----KFT---PQQLHHLHERLKFFDHIPTLAA--AGG-INPENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHHHHHHHcCcCEEEEC-----CCC---HHHHHHHHHHHhccCCCEEEEE--ECC-CCHHHHHHHHhcCCCEEEeC
Confidence 456666778899988883 343 4788899988876667777665 445 49999999999999999875
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=17 Score=33.96 Aligned_cols=137 Identities=17% Similarity=0.081 Sum_probs=81.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++...+.+..-|.-.+... ....+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.++...++|++.|.
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~--~~~~~~~~~~~~~~~~a~~~-~vpV~l-HlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVH--FKYISLESLVEAVKFEAARH-DIPVVL-NLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcch--hhcCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHhCCcEEE
Confidence 456667777777777777665443322 22234678888888887764 445433 33433477899999999999997
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE--EEeeeeeCCC----------CHHHHHHHHHHHHhCCCCE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT--KSSIMLGLGE----------SDDDLKEAMADLRSIDVDI 279 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v--~~~~IvGlgE----------t~e~~~~~l~~l~~lg~d~ 279 (351)
+.--..+ . ..+.+...+..+.++. .|+.| ..+.+-|-.+ ...+..+..+++++.|+|.
T Consensus 103 ~D~S~l~-~-------eeNi~~t~~v~~~a~~--~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~ 172 (286)
T PRK06801 103 FDGSTLE-Y-------EENVRQTREVVKMCHA--VGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDA 172 (286)
T ss_pred EcCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCE
Confidence 6211110 0 1133344566667777 77765 3333322110 0123467778888999999
Q ss_pred Eee
Q 018731 280 LTL 282 (351)
Q Consensus 280 i~i 282 (351)
+.+
T Consensus 173 LAv 175 (286)
T PRK06801 173 LAV 175 (286)
T ss_pred EEe
Confidence 888
|
|
| >PLN02540 methylenetetrahydrofolate reductase | Back alignment and domain information |
|---|
Probab=89.77 E-value=8.4 Score=39.44 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCC------CCcHHHHHHHHHHHHHhCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP------DGGSGHFARTVKAMKKQKP 181 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~------~~~~~~~~~li~~ik~~~p 181 (351)
++.+++.+.+..+.+.|++.|....|+++.-. .+++.+..+|++.|++.+.
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~g 126 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYG 126 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCC
Confidence 44567888888889999999987777764321 1345678899999998643
|
|
| >TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type | Back alignment and domain information |
|---|
Probab=89.68 E-value=8 Score=36.01 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCC------CCCcHHHHHHHHHHHHHhCCC-cEEEEe-ecCCC---CCHH-HH
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDI------PDGGSGHFARTVKAMKKQKPD-IMVECL-TSDFR---GDLR-AV 199 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l------~~~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~~---~~~e-~l 199 (351)
+..++.+.+..+.+.|++.|...+|+++.. ..+.++.-.++++.+++..+. +.|.+. .|.+. .+.+ .+
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~ 151 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDL 151 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHH
Confidence 346778888888899999998777776322 123356678899999875433 544432 24321 1222 23
Q ss_pred HHHH---HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 200 ETLV---HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 200 ~~L~---~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
+.|+ ++|.+.+ ..+ .-++.+...+.++.+++ .|+. .-++.|+
T Consensus 152 ~~L~~Ki~aGA~f~------iTQ-------~~Fd~~~~~~f~~~~~~--~gi~--~PIi~GI 196 (281)
T TIGR00677 152 KYLKEKVDAGADFI------ITQ-------LFYDVDNFLKFVNDCRA--IGID--CPIVPGI 196 (281)
T ss_pred HHHHHHHHcCCCEe------ecc-------ceecHHHHHHHHHHHHH--cCCC--CCEEeec
Confidence 3333 5888855 112 24566666777777887 7764 3557777
|
This protein is an FAD-containing flavoprotein. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=89.51 E-value=5.9 Score=37.69 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=79.5
Q ss_pred HHHHHHHhC--CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 138 NTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 138 ~~~~~~~~~--G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
+.++.+.+. +++.|++-..+. ..+.+.+.++.||+.+|+..|-. +...+.+.++.|.++|+|.|-+++=
T Consensus 110 er~~~L~~a~~~~d~iviD~AhG------hs~~~i~~ik~ir~~~p~~~via---GNV~T~e~a~~Li~aGAD~ikVgiG 180 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANG------YSEHFVEFVKLVREAFPEHTIMA---GNVVTGEMVEELILSGADIVKVGIG 180 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHhhCCCCeEEE---ecccCHHHHHHHHHcCCCEEEEccc
Confidence 344555555 588898854433 24789999999999998865533 2235899999999999999977643
Q ss_pred chHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
...- -.+.+.+-+ ....-..+..+.++. .++.+-++- |+ .+.-|+.+.+ .+|.+.+.++..+
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~--~~v~VIaDG--GI-r~~gDI~KAL----A~GAd~VMlG~ll 244 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHG--LKGHIISDG--GC-TCPGDVAKAF----GAGADFVMLGGMF 244 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhcc--CCCeEEEcC--Cc-CchhHHHHHH----HcCCCEEEECHhh
Confidence 3322 112222112 244444555555554 565543332 22 3334555443 4899998887554
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=89.34 E-value=5.1 Score=32.83 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
+.++.+.+.+++-|.+++-..+ . .+.+.++++++++..++ +.+ .. ++....+..+.|+++|++.+.+
T Consensus 44 ~~v~aa~e~~adii~iSsl~~~-~----~~~~~~~~~~L~~~g~~~i~v--iv-GG~~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAGG-H----LTLVPALRKELDKLGRPDILV--VV-GGVIPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchhh-h----HHHHHHHHHHHHhcCCCCCEE--EE-eCCCChHhHHHHHHCCCCEEEC
Confidence 3455556779999999875532 2 36788899999887543 333 22 2323556678899999998753
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=11 Score=34.66 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=13.9
Q ss_pred EEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 151 IVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 151 I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
.+++.|.|+ .+...++++.+.+.
T Consensus 16 ~yi~aG~P~------~~~~~~~~~~l~~~ 38 (258)
T PRK13111 16 PYITAGDPD------LETSLEIIKALVEA 38 (258)
T ss_pred EEEeCCCCC------HHHHHHHHHHHHHC
Confidence 366777652 35666766666554
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=19 Score=33.59 Aligned_cols=137 Identities=10% Similarity=0.166 Sum_probs=79.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC-CCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.++++.+.|+.-|-+.|... +... ..+++++..+++.+++.. ++.|.+ |. ...+.++...++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISI---DT-~~~~va~~AL~~ 109 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISV---DT-SKPEVIRESAKA 109 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEE---EC-CCHHHHHHHHHc
Confidence 4678888999999999999888865331 1111 112345666778887643 444432 22 267778887788
Q ss_pred CCCeeec--chhchHHHHhhh------------cC-CC-----CC--------HHHHHHHHHHHHHhCCCC---eEEEee
Q 018731 206 GLDVFAH--NIETVKRLQRIV------------RD-PR-----AG--------YEQSLEVLKHAKLSKKGL---ITKSSI 254 (351)
Q Consensus 206 G~~~i~~--~ies~~~~~~~~------------r~-~~-----~~--------~~~~l~~i~~~~~~~~Gi---~v~~~~ 254 (351)
|.+.|+- ++.. +++.+.+ ++ |. .. .+...+.++.+.+ .|+ ++-.|-
T Consensus 110 GadiINDI~g~~d-~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~--~GI~~~~IilDP 186 (282)
T PRK11613 110 GAHIINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEA--AGIAKEKLLLDP 186 (282)
T ss_pred CCCEEEECCCCCC-HHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHH--cCCChhhEEEeC
Confidence 8887731 2211 1111100 00 00 01 1233455677777 899 466666
Q ss_pred eeeCCCCHHHHHHHHHHHHhC
Q 018731 255 MLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~l 275 (351)
-+|||.|.++=.++++.+..+
T Consensus 187 GiGF~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 187 GFGFGKNLSHNYQLLARLAEF 207 (282)
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 678888887766666665443
|
|
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=89.17 E-value=6.3 Score=36.37 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=69.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC------CcHHHHHHHHHHHHHhC-CCcEEEE-eecCCC---CC-H---
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQK-PDIMVEC-LTSDFR---GD-L--- 196 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~------~~~~~~~~li~~ik~~~-p~i~i~~-~~~~~~---~~-~--- 196 (351)
+..++...+..+.+.|++.|.+.+|+++...+ ....+-.++++.++... +++.+.+ ..|.+. .+ +
T Consensus 71 n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~ 150 (274)
T cd00537 71 NRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDI 150 (274)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHH
Confidence 45778888888889999999988887653321 22345678888888753 2333321 112211 11 2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C-CCHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDL 265 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g-Et~e~~ 265 (351)
+.++.=.++|.+.+. .+ ..++.+...+.++.+++ .|+. .-++.|+ + .+...+
T Consensus 151 ~~L~~Ki~aGA~f~i------TQ-------~~fd~~~~~~~~~~~~~--~gi~--vPIi~GI~p~~s~~~l 204 (274)
T cd00537 151 KRLKRKVDAGADFII------TQ-------LFFDNDAFLRFVDRCRA--AGIT--VPIIPGIMPLTSYKQA 204 (274)
T ss_pred HHHHHHHHCCCCEEe------ec-------ccccHHHHHHHHHHHHH--cCCC--CCEEeeccccCCHHHH
Confidence 334444466877651 11 34566777777788888 7863 4566776 3 344443
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=3 Score=38.89 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++++++.+.|++.|.| +.++ .+.+.+.++.+++..+.+.+++ .++ .+.+.+..+++.|+|.|+.+
T Consensus 199 leqa~ea~~agaDiI~L-----Dn~~---~e~l~~av~~~~~~~~~~~lea--SGG-I~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL-----DKFS---PQQATEIAQIAPSLAPHCTLSL--AGG-INLNTLKNYADCGIRLFITS 264 (284)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhhccCCCeEEEE--ECC-CCHHHHHHHHhcCCCEEEEC
Confidence 56666777889998888 3344 4788888888776556666665 445 49999999999999999765
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.06 E-value=15 Score=33.12 Aligned_cols=129 Identities=11% Similarity=0.186 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++++++..-+.. .. ...-.++++.+.+.... .+.+ .++..+.+.++.+.++|++++.+|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a--~~--~~~n~~~i~~i~~~~~~-~v~v--GGGIrs~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAA--EG--VGNNEMYIKEISKIGFD-WIQV--GGGIRDIEKAKRLLSLDVNALVFS 102 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCc--CC--CcchHHHHHHHHhhCCC-CEEE--eCCcCCHHHHHHHHHCCCCEEEEC
Confidence 36788888888999999998665431 11 12233778777763211 3333 456668899999999999999887
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-----ee--eCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-----ML--GLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-----Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
-++++. .+-..+..+..-. .-+-++.++ +. |-.++..++.+.++.+.++|+..+-+
T Consensus 103 t~a~~~-----------p~~~~~~~~~~g~--~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~ 165 (232)
T PRK13586 103 TIVFTN-----------FNLFHDIVREIGS--NRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIF 165 (232)
T ss_pred chhhCC-----------HHHHHHHHHHhCC--CCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEE
Confidence 655432 1111111222100 112233333 22 21234446778888888999876555
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.06 E-value=13 Score=34.63 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+.+.+.|+|.+.+
T Consensus 55 s~eEr~~~~~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 55 STEEKKQVLEIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 444444444444432222 12345555 234455555555555555555444
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.04 E-value=8.9 Score=33.56 Aligned_cols=122 Identities=19% Similarity=0.142 Sum_probs=70.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCH--HHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL--RAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~--e~l~~L~~aG~~~ 209 (351)
++++..+.++.+ +.|++.|-+ |.+ +. ...=.+.++.+++.+|+..+-+-+. ..+. ..++.+.++|.|.
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev--~~~--l~---~~~g~~~i~~l~~~~~~~~i~~d~k--~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEI--GTP--LI---KNEGIEAVKEMKEAFPDRKVLADLK--TMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEe--CCH--HH---HHhCHHHHHHHHHHCCCCEEEEEEe--eccchHHHHHHHHHcCCCE
Confidence 457778888887 778876666 221 21 1222577888888766544332110 0122 3689999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.+..++.. ....+.++.+++ .|+.+...++ +..+..+++ ..+.++|+|.+.++
T Consensus 80 i~vh~~~~~-------------~~~~~~i~~~~~--~g~~~~~~~~-~~~t~~~~~----~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 80 VTVLGVADD-------------ATIKGAVKAAKK--HGKEVQVDLI-NVKDKVKRA----KELKELGADYIGVH 133 (206)
T ss_pred EEEeccCCH-------------HHHHHHHHHHHH--cCCEEEEEec-CCCChHHHH----HHHHHcCCCEEEEc
Confidence 976654321 123456667777 7887543221 112222333 44466799988773
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=3.4 Score=38.40 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~--p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.| |.++ .+.+.+.++.+++.. |.+.+++ .++. +.+.++.+++.|+|.|+.|.
T Consensus 192 leea~~a~~agaDiI~L-----Dn~~---~e~l~~~v~~l~~~~~~~~~~lea--SGGI-~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 192 LEDALKAAKAGADIIML-----DNMT---PEEIREVIEALKREGLRERVKIEV--SGGI-TPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHHHcCcCEEEE-----CCCC---HHHHHHHHHHHHhcCcCCCEEEEE--ECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 45566667889987777 2333 478888888888754 4555555 4454 99999999999999998764
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=88.95 E-value=4.4 Score=35.94 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCC-CC---C-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCC
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDR-DD---I-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~-~~---l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~ 207 (351)
.++..+.+++..+.|+..|-+.++.. +. . ...+++++..+++.+++..+++.+.+=|. +++.++...++|.
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~----~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF----NPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC----CHHHHHHHHHcCc
Confidence 45566778888899999999876541 11 1 11235678888888886334666654332 5677777666777
Q ss_pred Ceee
Q 018731 208 DVFA 211 (351)
Q Consensus 208 ~~i~ 211 (351)
+.|+
T Consensus 94 ~~in 97 (210)
T PF00809_consen 94 DIIN 97 (210)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 7653
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.86 E-value=35 Score=38.26 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCchhHHHHHHHHHhC--CCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHhCCCcEEEEeecC-----CC-----CCH
Q 018731 131 PDPMEPENTAKAIASW--GVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR-----GDL 196 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~--G~~~I~ltgg~~~~l--~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-----~~-----~~~ 196 (351)
++.++.+.+++.+.+. |+..|=+.||...+. .-.. +.=.+.++.+++..|++.+.++..+ +. ...
T Consensus 552 ~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~-e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~ 630 (1146)
T PRK12999 552 VRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLK-EDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVR 630 (1146)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccC-CCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHH
Confidence 4567888899999998 999998877653211 0000 1224567778877787766644321 00 124
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee-e-----C--CCCHHHHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-G-----L--GESDDDLKEA 268 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv-G-----l--gEt~e~~~~~ 268 (351)
+.++..+++|+|.+.+. ++. ...+.....++.+++ .|......+-+ | . -.|.+-+.+.
T Consensus 631 ~~i~~a~~~Gid~~rif-d~l-----------nd~~~~~~~i~~vk~--~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~ 696 (1146)
T PRK12999 631 AFVREAAAAGIDVFRIF-DSL-----------NWVENMRVAIDAVRE--TGKIAEAAICYTGDILDPARAKYDLDYYVDL 696 (1146)
T ss_pred HHHHHHHHcCCCEEEEe-ccC-----------ChHHHHHHHHHHHHH--cCCeEEEEEEEEecCCCCCCCCCCHHHHHHH
Confidence 56888999999988653 122 234445667778887 67532222211 1 1 1478888999
Q ss_pred HHHHHhCCCCEEee
Q 018731 269 MADLRSIDVDILTL 282 (351)
Q Consensus 269 l~~l~~lg~d~i~i 282 (351)
++.+.++|++.+.+
T Consensus 697 a~~l~~~Ga~~i~i 710 (1146)
T PRK12999 697 AKELEKAGAHILAI 710 (1146)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998887
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=88.72 E-value=20 Score=33.35 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=84.6
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+..-.++|+++|-
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~--~~~~~~~~~~~~~~~~a~~~-~VPVal-HLDHg~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGT--FKHAGTEYIVALCSAASTTY-NMPLAL-HLDHHESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccH--HhhCCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEe
Confidence 356667777777777777555433322 22123577888888887754 455543 33433478999999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...++++.++. .|+.|.+- -|-|- ++ . .-+-.+..+|+++.|+|.+
T Consensus 101 ~DgS~lp-~-------eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 170 (282)
T TIGR01858 101 IDGSHFP-F-------AQNVKLVKEVVDFCHR--QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSL 170 (282)
T ss_pred ecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEE
Confidence 5311111 1 1134445577788888 88876553 34333 11 1 1134778889999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 171 Av 172 (282)
T TIGR01858 171 AV 172 (282)
T ss_pred ec
Confidence 76
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification | Back alignment and domain information |
|---|
Probab=88.67 E-value=2.3 Score=38.13 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.+.++.+.+.|++.|.+. + ..+++.+++.+|++.+.+.+.-...+.+.++.+.+.|++++.++
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~--~------------~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS--N------------PGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc--C------------HHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEEC
Confidence 567788888999999998882 2 23566778878888877655444458899999999999999887
Q ss_pred hhc
Q 018731 214 IET 216 (351)
Q Consensus 214 ies 216 (351)
.|-
T Consensus 68 ~EL 70 (233)
T PF01136_consen 68 PEL 70 (233)
T ss_pred ccC
Confidence 553
|
; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=88.65 E-value=4.9 Score=36.17 Aligned_cols=132 Identities=21% Similarity=0.277 Sum_probs=80.7
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++++++..-+. ... +...-.++++.+.+.. .+.+.+ .++..+.+.++.+.++|++++.+
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLda--a~~-g~~~n~~~i~~i~~~~-~~~i~v--gGGIrs~ed~~~ll~~Ga~~Vvi 101 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDA--AKE-GRGSNLELIKEIAKET-GIPIQV--GGGIRSIEDAERLLDAGADRVVI 101 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHH--HCC-THHHHHHHHHHHHHHS-SSEEEE--ESSE-SHHHHHHHHHTT-SEEEE
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccC--ccc-CchhHHHHHHHHHhcC-CccEEE--eCccCcHHHHHHHHHhCCCEEEe
Confidence 45677888888899999999865432 111 2345568888888764 356654 45666899999999999999998
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee-----CCC---CHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LGE---SDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG-----lgE---t~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+-+++.. + .-.+ +..+..-. --+-++.++--| -|- +.-+..+.++.+.++|+..+-+.
T Consensus 102 gt~~~~~-------~-~~l~---~~~~~~g~--~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 167 (229)
T PF00977_consen 102 GTEALED-------P-ELLE---ELAERYGS--QRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILT 167 (229)
T ss_dssp SHHHHHC-------C-HHHH---HHHHHHGG--GGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEE
T ss_pred ChHHhhc-------h-hHHH---HHHHHcCc--ccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEe
Confidence 8666532 1 0111 12222211 134444554444 122 23567888899999999887663
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.64 E-value=14 Score=33.93 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=50.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC---------------cHHHHHHHHHHHHHhCCCcEEEEe---ecCCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG---------------GSGHFARTVKAMKKQKPDIMVECL---TSDFR 193 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~---------------~~~~~~~li~~ik~~~p~i~i~~~---~~~~~ 193 (351)
+.+.-.+.++.+.+.|++-|-|.---.+.+.|+ ..+.+.++++.+++..+++.+..+ .|-+.
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 456667778888889999887732111222222 135778888888865334432222 22111
Q ss_pred -CCHHHHHHHHHcCCCeeecch
Q 018731 194 -GDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 194 -~~~e~l~~L~~aG~~~i~~~i 214 (351)
..++.++.++++|++.+.+--
T Consensus 102 ~G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECC
Confidence 126789999999999987643
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=88.41 E-value=30 Score=35.43 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=57.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCH-----------HHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL-----------RAV 199 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~-----------e~l 199 (351)
.+..++.+.++.+.+.|+++++|..-+...-...+.+...++++.+.+.. .+.+++ .+++.+. |.+
T Consensus 264 ~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~v--GGGIr~~~d~~~~~~~~~e~~ 340 (538)
T PLN02617 264 RNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLTV--GGGIRDFTDANGRYYSSLEVA 340 (538)
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEEE--cCCccccccccccccchHHHH
Confidence 44567888999999999999988655431001111245788888888752 445543 3444343 789
Q ss_pred HHHHHcCCCeeecchhchH
Q 018731 200 ETLVHSGLDVFAHNIETVK 218 (351)
Q Consensus 200 ~~L~~aG~~~i~~~ies~~ 218 (351)
+.+.++|+|.|.+|-..+.
T Consensus 341 ~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 341 SEYFRSGADKISIGSDAVY 359 (538)
T ss_pred HHHHHcCCCEEEEChHHHh
Confidence 9999999999999865543
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=88.26 E-value=15 Score=37.10 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee-c
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA-H 212 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~-~ 212 (351)
+++.+.++.+.+.|++-|-+.++.. -+ +.+.+..+++.+++.. ++.|.+ |. .+.+.++.-.++|.+.|+ +
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st--~p--~~~~v~~~V~~l~~~~-~~pISI---DT-~~~~v~eaAL~aGAdiINsV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF--DD--DPDVVKEKVKTALDAL-DSPVIA---DT-PTLDELYEALKAGASGVIMP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC--CC--cHHHHHHHHHHHHhhC-CCcEEE---eC-CCHHHHHHHHHcCCCEEEEC
Confidence 7788888888999999998876543 12 2467888999988753 444433 22 277888888889999876 2
Q ss_pred chhchHHHHhhhc-----------CCCCCHHHHHHHHHHHHHhCCCC-eEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 213 NIETVKRLQRIVR-----------DPRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 213 ~ies~~~~~~~~r-----------~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
+-+..+++.+... .....++...+.++.+.+ .|+ .+-.|=++|+ ....+.+.+..++
T Consensus 236 s~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~--~Gi~~IIlDPglg~--~~~~l~~sL~~l~ 304 (499)
T TIGR00284 236 DVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRT--SGYSKVAADPSLSP--PLLGLLESIIRFR 304 (499)
T ss_pred CccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHH--CCCCcEEEeCCCCc--chHHHHHHHHHHH
Confidence 2222333321111 012346777788888988 999 4666666665 2334666666665
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=9.6 Score=35.82 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
..++.+.+.|++.|.++=-|. +. ..-+.+++.+.++.+.+.-.| ...+|+|.|.+.++..+.++.+.++|
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstG-E~------~~Lt~eEr~~~~~~~~~~~~~---~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTG-EF------FSLTPDEYSQVVRAAVETTAG---RVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCc-Cc------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 566667777888775532121 11 123566666666666542222 23456666447777777888888888
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
+|.+.+
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 887655
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.20 E-value=15 Score=36.27 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhch
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~ 217 (351)
+.++.+.+.|++.|.|-- .+++ .+.+.++++.+++......+.++.++ .++...+.|.+.|.++.+.+
T Consensus 221 ~~ve~aL~aGv~~VQLRe---K~ls---~~el~~la~~l~~l~~~~gv~LiIND------~~dlAl~~gAdGVHLGQeDL 288 (437)
T PRK12290 221 EWIERLLPLGINTVQLRI---KDPQ---QADLEQQIIRAIALGREYNAQVFIND------YWQLAIKHQAYGVHLGQEDL 288 (437)
T ss_pred HHHHHHHhCCCCEEEEeC---CCCC---HHHHHHHHHHHHHHHHHhCCEEEEEC------HHHHHHHcCCCEEEcChHHc
Confidence 357777889999888842 1233 35566666666543211222333332 46667788999998886543
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCccccc
Q 018731 218 KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVK 296 (351)
Q Consensus 218 ~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~ 296 (351)
... ..+.+.. + +.++|+ -.+.+++.+ +.+.|+|++.+++++ ||.-..+..
T Consensus 289 ~~~----------------~aR~ilg--~------~~iIGvStHs~eEl~~----A~~~gaDYI~lGPIF-pT~TK~~~~ 339 (437)
T PRK12290 289 EEA----------------NLAQLTD--A------GIRLGLSTHGYYELLR----IVQIQPSYIALGHIF-PTTTKQMPS 339 (437)
T ss_pred chh----------------hhhhhcC--C------CCEEEEecCCHHHHHH----HhhcCCCEEEECCcc-CCCCCCCCC
Confidence 221 0111111 2 346888 788887643 346899999998665 765432223
Q ss_pred CCCCHHHHHHHHHHHH
Q 018731 297 EYVTPEKFDFWKAYGE 312 (351)
Q Consensus 297 ~~v~~~e~~~~~~~~~ 312 (351)
.....+.+.++++...
T Consensus 340 ~p~Gl~~L~~~~~l~~ 355 (437)
T PRK12290 340 KPQGLVRLALYQKLID 355 (437)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 4455566666665543
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.06 E-value=16 Score=32.43 Aligned_cols=122 Identities=20% Similarity=0.138 Sum_probs=78.1
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE--eecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC--LTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~--~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+.++..+.++++.+. ..++--|+| .+. .+=.+.++.+++.+|+-.|-+ =|.|. ..=..+...++|-|.
T Consensus 14 ~l~~Ai~~a~~v~~~---~diiEvGTp-Lik----~eG~~aV~~lr~~~pd~~IvAD~Kt~D~--G~~e~~ma~~aGAd~ 83 (217)
T COG0269 14 DLEEAIEIAEEVADY---VDIIEVGTP-LIK----AEGMRAVRALRELFPDKIIVADLKTADA--GAIEARMAFEAGADW 83 (217)
T ss_pred CHHHHHHHHHHhhhc---ceEEEeCcH-HHH----HhhHHHHHHHHHHCCCCeEEeeeeecch--hHHHHHHHHHcCCCE
Confidence 345556666665543 334444765 233 222488999999999854432 11221 234668889999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+.+.- -.+.....++++.+++ .|..+..++|- .. ++.+-.++++++|++.+.+.
T Consensus 84 ~tV~g-------------~A~~~TI~~~i~~A~~--~~~~v~iDl~~--~~---~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 84 VTVLG-------------AADDATIKKAIKVAKE--YGKEVQIDLIG--VW---DPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred EEEEe-------------cCCHHHHHHHHHHHHH--cCCeEEEEeec--CC---CHHHHHHHHHHhCCCEEEEE
Confidence 87531 2355566778888999 88888777663 23 45556677788999988774
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=88.02 E-value=3.9 Score=36.74 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++++.+.++.+.+.|+..|.|..-..-.. ...+.++++.+++..|++.+.+- +++.-+--...-.-.++|+++
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGIMT----PEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-S-----HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCCcC----HHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 4578888999999999999999854332222 47899999999999886665542 333322333444456799999
Q ss_pred eecchhc
Q 018731 210 FAHNIET 216 (351)
Q Consensus 210 i~~~ies 216 (351)
|-.++-.
T Consensus 210 id~t~~G 216 (237)
T PF00682_consen 210 IDGTLGG 216 (237)
T ss_dssp EEEBGGG
T ss_pred EEccCcc
Confidence 8655443
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=88.01 E-value=24 Score=33.39 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.++..+.++.+.+.|++.+-++... .. +...+..+.+........+..+.+. ....++...++|++.+
T Consensus 17 ~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~ 86 (344)
T TIGR02146 17 FSTEQKIEIAKALDEFGIDYIEVTHPA---AS----KQSRIDIEIIASLGLKANIVTHIRC---RLDDAKVAVELGVDGI 86 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---CC----HHHHHHHHHHHhcCCCcEEEEECCC---CHHHHHHHHHCCcCEE
Confidence 456778888899999999999886532 21 1223334444432212233333332 3577788889999987
Q ss_pred ecchhchH--HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 211 AHNIETVK--RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 211 ~~~ies~~--~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+..-+.+ ...+..+......++....++.+++ .|+.+...++-.+-...+++.+..+.+.+++++.+.+
T Consensus 87 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~--~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~ 158 (344)
T TIGR02146 87 DIFFGTSKLLRIAEHRSDAKSILESARETIEYAKS--AGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGI 158 (344)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 65432211 1122221012234567778888888 8998888877766667788999999999999998765
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.97 E-value=14 Score=36.90 Aligned_cols=134 Identities=23% Similarity=0.256 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+-.+.++.+.+.|++-|.+...++ ....+.+.++.|++.+|++.|-+ +...+.+.+..+.++|+|.|-+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~vi~---G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLDIIA---GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCCEEE---EeCCCHHHHHHHHHhCCCEEEECC
Confidence 345666788889999999865443 13578899999999888876544 223488999999999999996554
Q ss_pred hchH-HHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVK-RLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~-~~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
=... ...+.+.+-+ ....-..+..+.+++ .|+.+-++- | -.|..|+.+.+ .+|.+.+.++..+
T Consensus 295 g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~--~~vpviadG--G-i~~~~di~kAl----a~GA~~V~~G~~~ 359 (450)
T TIGR01302 295 GPGSICTTRIVAGVGVPQITAVYDVAEYAAQ--SGIPVIADG--G-IRYSGDIVKAL----AAGADAVMLGSLL 359 (450)
T ss_pred CCCcCCccceecCCCccHHHHHHHHHHHHhh--cCCeEEEeC--C-CCCHHHHHHHH----HcCCCEEEECchh
Confidence 2110 0111111111 133333444455555 666532210 3 24566766654 4799999987655
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=3.6 Score=38.44 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-..-.. ..++.++++.+++..+++.+.+- +++.-+.-.-.-.-.++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~ 227 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGVGT----PGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITV 227 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCccC----HHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 4578889999999999999999943332212 37899999999988776554431 333222233333346899999
Q ss_pred eecchhc
Q 018731 210 FAHNIET 216 (351)
Q Consensus 210 i~~~ies 216 (351)
+..++..
T Consensus 228 id~s~~G 234 (287)
T PRK05692 228 FDASVGG 234 (287)
T ss_pred EEEEccc
Confidence 9765544
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=87.82 E-value=5.3 Score=36.28 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=49.1
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCc---------------HHHHHHHHHHHHHhCCCcEEEEee---cCCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------------SGHFARTVKAMKKQKPDIMVECLT---SDFR 193 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~---------------~~~~~~li~~ik~~~p~i~i~~~~---~~~~ 193 (351)
+.+...+.++.+.+.|++.+-+.=-..+...|+. .+...++++.+++.. ++.+.+++ +-+.
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~ 90 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQ 90 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHH
Confidence 3467788888999999998888411111122221 125667888887653 33443322 2111
Q ss_pred -CCHHHHHHHHHcCCCeeec
Q 018731 194 -GDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 194 -~~~e~l~~L~~aG~~~i~~ 212 (351)
.-+..++.++++|++.+.+
T Consensus 91 ~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEE
Confidence 1268899999999999876
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=87.57 E-value=21 Score=32.30 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=76.3
Q ss_pred CcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCC--------CCHHHHHHHHHcCCCeeecchhchHH
Q 018731 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--------GDLRAVETLVHSGLDVFAHNIETVKR 219 (351)
Q Consensus 148 ~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~--------~~~e~l~~L~~aG~~~i~~~ies~~~ 219 (351)
++.+-|.+|....++ .+.+.+.++..+++ ++.+. +.+.. .-++.++..++.|++.|-++--+.
T Consensus 25 ID~lKfg~Gt~~l~~---~~~l~eki~la~~~--~V~v~--~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-- 95 (237)
T TIGR03849 25 ITFVKFGWGTSALID---RDIVKEKIEMYKDY--GIKVY--PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-- 95 (237)
T ss_pred eeeEEecCceEeecc---HHHHHHHHHHHHHc--CCeEe--CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc--
Confidence 667788888754333 25677888877876 44442 22211 124677899999999986652221
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--C-----CCHHHHHHHHHHHHhCCCCEEee
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G-----ESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--g-----Et~e~~~~~l~~l~~lg~d~i~i 282 (351)
.-+.+++++.|+.+++ .|+.+.+- +|. . .+.+++.+.++.-.+.|++.|-+
T Consensus 96 --------~i~~~~~~rlI~~~~~--~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~Vii 153 (237)
T TIGR03849 96 --------EISLEERCNLIERAKD--NGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAGADYVII 153 (237)
T ss_pred --------CCCHHHHHHHHHHHHh--CCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3467888899999999 89986654 444 2 45567777777778899998777
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=87.56 E-value=11 Score=35.04 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.+++.+.++.+.+...| ...+|+|.+.+.++..+..+.+.++|+|.+.+
T Consensus 51 s~eEr~~l~~~~~~~~~~---~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 51 TPDEYAQVVRAAVEETAG---RVPVLAGAGYGTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 444555555544442112 12234444335555555666666666665544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.49 E-value=4.9 Score=37.42 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=71.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++..|++.+++- +++.-+--.-.-.-.++|++.|
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~v 220 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLGILS----PFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGL 220 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCC----HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 567888889999999999999843322212 36899999999988777655532 3332222333344567899998
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
..++-.+-+ .- .....++.+..++. . .|+.+ |-+.+.+.++.+++.+
T Consensus 221 d~s~~GlGe---~a--GN~~~E~~v~~L~~--~--~g~~t--------~idl~~l~~~~~~v~~ 267 (280)
T cd07945 221 HTTVNGLGE---RA--GNAPLASVIAVLKD--K--LKVKT--------NIDEKRLNRASRLVET 267 (280)
T ss_pred EEecccccc---cc--cCccHHHHHHHHHH--h--cCCCc--------CcCHHHHHHHHHHHHH
Confidence 654433211 10 02355666665532 1 34432 2344555555555544
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=87.45 E-value=9 Score=36.81 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++.+|. +.+++ +++.-+--.-.-.-.++|++
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~----P~~v~~lv~~l~~~~~~~~i~~H~-Hnd~GlA~AN~lAA~~aGa~ 268 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEISLGDTIGVGT----PGTVVPMLEAVMAVVPVDKLAVHF-HDTYGQALANILVSLQMGIS 268 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCcC----HHHHHHHHHHHHHhCCCCeEEEEE-CCCCChHHHHHHHHHHhCCC
Confidence 4678889999999999999999943322112 37899999999988765 34444 33322223333345678999
Q ss_pred eeecchhc
Q 018731 209 VFAHNIET 216 (351)
Q Consensus 209 ~i~~~ies 216 (351)
.+...+-.
T Consensus 269 ~vd~sv~G 276 (347)
T PLN02746 269 TVDSSVAG 276 (347)
T ss_pred EEEEeccc
Confidence 98765544
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=87.43 E-value=7.2 Score=35.18 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++++++..-+. ... ...-.++++.+.+.. ++.+.+ .++..+.|.++.+.++|++++.+
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~--~~~--~~~n~~~i~~i~~~~-~~~v~v--gGGir~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDA--IMG--RGDNDEAIRELAAAW-PLGLWV--DGGIRSLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCcc--ccC--CCccHHHHHHHHHhC-CCCEEE--ecCcCCHHHHHHHHHcCCCeEEE
Confidence 34778889999999999998865443 111 123456777776643 344443 44666889999999999999988
Q ss_pred chhch
Q 018731 213 NIETV 217 (351)
Q Consensus 213 ~ies~ 217 (351)
|-+++
T Consensus 107 gt~~~ 111 (233)
T cd04723 107 GTETL 111 (233)
T ss_pred cceec
Confidence 76664
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=87.42 E-value=11 Score=35.27 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHH
Q 018731 230 GYEQSLEVLKHAKL 243 (351)
Q Consensus 230 ~~~~~l~~i~~~~~ 243 (351)
+.++.++..+.+.+
T Consensus 81 ~t~~~i~la~~a~~ 94 (290)
T TIGR00683 81 NLKEAVELGKYATE 94 (290)
T ss_pred CHHHHHHHHHHHHH
Confidence 44445555555544
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.28 E-value=20 Score=32.35 Aligned_cols=128 Identities=9% Similarity=0.041 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 134 MEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 134 eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..+.+.++.+.+ .|++++++..-+.. .. +...-.++++.|.+. .++.+.+ .++..+.|.++.+.++|++++.+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a--~~-~~~~n~~~I~~i~~~-~~~pi~v--GGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGA--KA-QHAREFDYIKSLRRL-TTKDIEV--GGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECccc--cc-CCcchHHHHHHHHhh-cCCeEEE--cCCcCCHHHHHHHHHCCCCEEEE
Confidence 356667888887 69999998654431 11 123446777777764 3555554 56667899999999999999988
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCC-CCeEEEeeeee------C-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK-GLITKSSIMLG------L-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~IvG------l-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|-++.++ + +.++.+.+.++ .+-++.+.--| . ..+.-+..+.++.+.++++..+-+
T Consensus 105 gt~a~~~-----------~----~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 105 GTKGIQD-----------T----DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred CchHhcC-----------H----HHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 7665432 1 11112222111 12233343222 1 234445677777778888876555
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.28 E-value=27 Score=33.00 Aligned_cols=173 Identities=16% Similarity=0.104 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++++.+.+..-|.-.+... +...+.+.+..+++.+.+..+.+.|.+ .-|.-.+.|.+..-.++|+++|-
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~~--~~~~g~~~~~~~~~~~a~~~~~VPVal-HLDHg~~~e~i~~ai~~GftSVM 102 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEGA--IKYMGIDMAVGMVKIMCERYPHIPVAL-HLDHGTTFESCEKAVKAGFTSVM 102 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccH--HhhCChHHHHHHHHHHHHhcCCCeEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 356666777777777777655443322 222235677788888877654456543 33444588999999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC---C-----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE---S-----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE---t-----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...++++.++. .|+.|.+- .+-|- ++ . .-+-.+..+|+++.|+|.+
T Consensus 103 ~DgS~l~-~-------eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~L 172 (307)
T PRK05835 103 IDASHHA-F-------EENLELTSKVVKMAHN--AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYL 172 (307)
T ss_pred EeCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEE
Confidence 5311111 1 1133344577888888 88876553 34343 11 0 1134778899999999987
Q ss_pred eeecccCCCCCccc-ccCCCCHHHHHHHHHHHHhcCcceecc
Q 018731 281 TLGQYLQPTPLHLT-VKEYVTPEKFDFWKAYGESIGFRYVAS 321 (351)
Q Consensus 281 ~i~~~l~PTp~~~~-~~~~v~~~e~~~~~~~~~~~G~~~~~~ 321 (351)
.+. +=.--..+.. ..+.+ ++++++++.+..+...+.+
T Consensus 173 Ava-iGt~HG~Yk~~~~p~L---~f~~L~~I~~~~~iPLVLH 210 (307)
T PRK05835 173 APA-IGTSHGAFKFKGEPKL---DFERLQEVKRLTNIPLVLH 210 (307)
T ss_pred EEc-cCccccccCCCCCCcc---CHHHHHHHHHHhCCCEEEe
Confidence 763 2011112210 11223 4555555555556554443
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=87.27 E-value=14 Score=32.67 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=61.5
Q ss_pred eEEEEeeccCCCCCCcCcccCC-CCC-C-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKT-SRN-P-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~-~~~-~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
..+++.+..+|. +.. ++. + ....+++....+......|.+.++|..++....+ .+ .++++.+++.
T Consensus 107 p~gYiv~~~~~~-------v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~-v~----~e~i~~Vk~~ 174 (205)
T TIGR01769 107 PMAYLIVGPGGA-------VGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYP-VN----PETISLVKKA 174 (205)
T ss_pred ceEEEEECCCCc-------eeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCC-CC----HHHHHHHHHh
Confidence 456666666652 222 221 1 2356788888887777899999999665432111 11 5667777765
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
. ++.+.+ .++..+.+.++.+.++|.|.+-+|
T Consensus 175 ~-~~Pv~v--GGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 175 S-GIPLIV--GGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred h-CCCEEE--eCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3 444433 456679999999999999988653
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=87.16 E-value=8.2 Score=30.92 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
+.++.+.+.+.+.|.+++-... . .+.+.++++.+++..+ ++.+-+ . +...++..+.++++|+|.+.+
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~-~----~~~~~~~~~~L~~~~~~~i~i~~--G-G~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGG-H----MTLFPEVIELLRELGAGDILVVG--G-GIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchh-h----HHHHHHHHHHHHhcCCCCCEEEE--E-CCCCHHHHHHHHHCCCCEEEC
Confidence 3445556778998988776532 2 3678889999998755 444433 2 222467789999999998754
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=87.11 E-value=23 Score=32.03 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.+......|+..|.+= -++|-..-...++..+-+.++. .+++++. .++++++...+...+.+++-.
T Consensus 22 d~v~aA~~a~~aGAdgITvH--lReDrRHI~d~Dv~~l~~~~~~---~lNlE~a-----~~~emi~ia~~vkP~~vtLVP 91 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVH--LREDRRHIQDRDVYDLKEALTT---PFNIEMA-----PTEEMIRIAEEIKPEQVTLVP 91 (237)
T ss_pred CHHHHHHHHHHcCCCEEEec--CCCCcCcCCHHHHHHHHHHcCC---CEEeccC-----CCHHHHHHHHHcCCCEEEECC
Confidence 34555666677899988771 1111111112344444333322 4677653 278999999999999999877
Q ss_pred hchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 215 ETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 215 es~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.-.++. ..--+-....+..-+.++.+++ .||.|+.. + .-. .+.++..+++|+|.|-++
T Consensus 92 Ekr~ElTTegGldv~~~~~~l~~~i~~l~~--~gI~VSLF--i--DP~----~~qi~~A~~~GAd~VELh 151 (237)
T TIGR00559 92 EARDEVTTEGGLDVARLKDKLCELVKRFHA--AGIEVSLF--I--DAD----KDQISAAAEVGADRIEIH 151 (237)
T ss_pred CCCCCccCCcCchhhhCHHHHHHHHHHHHH--CCCEEEEE--e--CCC----HHHHHHHHHhCcCEEEEe
Confidence 6655432 1000012355677788899999 99987554 2 122 455677789999999884
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.99 E-value=16 Score=33.48 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-..-.. .+.+.++++.+++..+.+.+..- +++.-+--.-.-...++|++.
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~ 213 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTDSAGAML----PDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATR 213 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCcC----HHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCE
Confidence 4568889999999999999999843222222 37899999999998754344331 333222222233344789999
Q ss_pred eecc
Q 018731 210 FAHN 213 (351)
Q Consensus 210 i~~~ 213 (351)
|-.+
T Consensus 214 vd~s 217 (263)
T cd07943 214 IDGS 217 (263)
T ss_pred EEee
Confidence 8544
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.93 E-value=13 Score=35.02 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.+.|++.|...=-|.+- +.-+.++..+.++.+++.-.| ...+|+|. +.+.++..+..+..+++
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~-------~~Ls~eEr~~v~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~~~ 98 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGES-------PTLTLEERKEVLEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAEKL 98 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccc-------hhcCHHHHHHHHHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHHhc
Confidence 56777788898887653222211 134777778888777763323 13378888 56688888888999999
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|-+.+
T Consensus 99 Gad~il~ 105 (299)
T COG0329 99 GADGILV 105 (299)
T ss_pred CCCEEEE
Confidence 9997665
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=86.61 E-value=20 Score=33.82 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.|.++=-|.+- ..-+.+++.+.++.+.+...| ...+|+|. ..+.++..+.++...+.
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGEC-------ATLTWEEKQAFVATVVETVAG---RVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccc-------hhCCHHHHHHHHHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 45555666666666543111111 122555555555555542222 23456666 35666666666777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 103 Gad~vlv 109 (309)
T cd00952 103 GADGTML 109 (309)
T ss_pred CCCEEEE
Confidence 7776555
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.53 E-value=5 Score=37.22 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=54.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++..|++.+.+- +++.-+-..-.-.-.++|++.|
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~i 222 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVAT----PAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRF 222 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccC----HHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 577888899999999999999943332212 37899999999998877655432 3332223333444568899998
Q ss_pred ecchh
Q 018731 211 AHNIE 215 (351)
Q Consensus 211 ~~~ie 215 (351)
...+-
T Consensus 223 d~t~~ 227 (274)
T cd07938 223 DSSVG 227 (274)
T ss_pred EEecc
Confidence 65544
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.34 E-value=29 Score=32.43 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=83.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+...-.+ .+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|+++|-
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~--~g~~~~~~~~~~~A~~~-~VPVal-HLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKY--AGIEYISAMVRTAAEKA-SVPVAL-HLDHGTDFEQVMKCIRNGFTSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhh--CCHHHHHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCeEE
Confidence 345666777777777776555443322112 23677888888777654 455533 33433477899999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC----C----HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE----t----~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++ + ..+.+...+.++.++. .|+.|.+- -|-|- +. + .-+..+..+|+++.|+|.+
T Consensus 103 ~DgS~lp-~-------eeNi~~T~~vv~~Ah~--~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~L 172 (284)
T PRK12857 103 IDGSKLP-L-------EENIALTKKVVEIAHA--VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDAL 172 (284)
T ss_pred EeCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEE
Confidence 5311111 1 1133344577788888 88876553 34343 11 1 1256788899999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 173 Av 174 (284)
T PRK12857 173 AI 174 (284)
T ss_pred ee
Confidence 77
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.31 E-value=20 Score=36.11 Aligned_cols=131 Identities=23% Similarity=0.299 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
..+.++.+.+.|++.+++.+.+. ....+.+.++.+++.+|++.+-+ +...+.+.+..+.++|++.|-++.=
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g------~~~~vl~~i~~i~~~~p~~~vi~---g~v~t~e~a~~l~~aGad~i~vg~g 299 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHG------HSEGVLDRVREIKAKYPDVQIIA---GNVATAEAARALIEAGADAVKVGIG 299 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCC------cchhHHHHHHHHHhhCCCCCEEE---eccCCHHHHHHHHHcCCCEEEECCC
Confidence 36777888889999777654332 12578899999999887766543 2335889999999999999976541
Q ss_pred chHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
...- ..+.+.+-+ .+++-..+..+.+++ .|+. +|. | -.|..|+.+.+. +|.+.+.++..+
T Consensus 300 ~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~--~~~~----viadGG-i~~~~di~kAla----~GA~~v~~G~~~ 363 (486)
T PRK05567 300 PGSICTTRIVAGVGVPQITAIADAAEAAKK--YGIP----VIADGG-IRYSGDIAKALA----AGASAVMLGSML 363 (486)
T ss_pred CCccccceeecCCCcCHHHHHHHHHHHhcc--CCCe----EEEcCC-CCCHHHHHHHHH----hCCCEEEECccc
Confidence 1110 111111111 234444444444444 5654 344 3 256677766654 799999988666
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.29 E-value=19 Score=31.89 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~-i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.++..+.++.+.+.|++-+-++--++ .-.+.++.+++.+++ +.|.+ +..++.+.++...++|.+.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~---------~~~~~i~~l~~~~~~~~~iGa---GTV~~~~~~~~a~~aGA~fi 87 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSP---------DPFDSIAALVKALGDRALIGA---GTVLSPEQVDRLADAGGRLI 87 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHcCCCcEEeE---EecCCHHHHHHHHHcCCCEE
Confidence 567888999999999999888763222 233567777777664 55544 23458899999999999987
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
... ..+ . +.++.++. .|+. ++.| ..|.+|+.+. .+.|.|.+.+
T Consensus 88 vsp--------------~~~-~---~v~~~~~~--~~~~----~~~G-~~t~~E~~~A----~~~Gad~vk~ 130 (206)
T PRK09140 88 VTP--------------NTD-P---EVIRRAVA--LGMV----VMPG-VATPTEAFAA----LRAGAQALKL 130 (206)
T ss_pred ECC--------------CCC-H---HHHHHHHH--CCCc----EEcc-cCCHHHHHHH----HHcCCCEEEE
Confidence 431 112 1 22333344 4543 2334 5666665443 3577887776
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.25 E-value=6 Score=36.59 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++.+.+.++.+.+.|++.|.|..-..... .+.+.++++.+++..|++.+.+- +++.-+.-.-.-.-.++|+++|
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i 224 (273)
T cd07941 149 NPEYALATLKAAAEAGADWLVLCDTNGGTL----PHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQV 224 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCCC----HHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence 567778888888899999998843322223 37899999999998877655542 3333222233333446899998
Q ss_pred ecch
Q 018731 211 AHNI 214 (351)
Q Consensus 211 ~~~i 214 (351)
-.++
T Consensus 225 d~s~ 228 (273)
T cd07941 225 QGTI 228 (273)
T ss_pred EEec
Confidence 6443
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=86.10 E-value=12 Score=34.66 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.++|++.+.++--+.+-. .-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+.++.++++
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~-------~Lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFY-------SLTDEERKELLEIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQDA 95 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGG-------GS-HHHHHHHHHHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-------cCCHHHHHHHHHHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhhc
Confidence 566777778888876642222110 23555666666655542222 23467777 66888888888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 96 Gad~v~v 102 (289)
T PF00701_consen 96 GADAVLV 102 (289)
T ss_dssp T-SEEEE
T ss_pred CceEEEE
Confidence 8887665
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=86.08 E-value=11 Score=35.43 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.5
Q ss_pred CCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC--------cHHHHHHHHHHHHHhCCCcEE
Q 018731 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--------GSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 126 ~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~--------~~~~~~~li~~ik~~~p~i~i 185 (351)
.+..+.+.+.+.++++.+.+.|++.|.|-|.......+. .-.-+.+.++.||+.+|++.|
T Consensus 43 PG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~v 110 (320)
T cd04824 43 PGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred CCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 344456678899999999999999998877631111110 012457899999999998643
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they |
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=86.01 E-value=26 Score=31.76 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
+.+.+......|...|.+== ++|-..-..+++..+-+.++. .+++++.. ++|+++...+...+.+++-.|
T Consensus 24 pv~aA~~a~~aGAdgITvHl--ReDrRHI~d~Dv~~L~~~~~~---~lNlE~a~-----t~e~~~ia~~~kP~~vtLVPE 93 (239)
T PF03740_consen 24 PVEAARIAEEAGADGITVHL--REDRRHIQDRDVRRLRELVKT---PLNLEMAP-----TEEMVDIALKVKPDQVTLVPE 93 (239)
T ss_dssp HHHHHHHHHHTT-SEEEEEB---TT-SSS-HHHHHHHHHH-SS---EEEEEEES-----SHHHHHHHHHH--SEEEEE--
T ss_pred HHHHHHHHHHcCCCEEEecc--CCCcCcCCHHHHHHHHHHccc---CEEeccCC-----CHHHHHHHHhCCcCEEEECCC
Confidence 45556666778999887621 111111112455554444433 26777743 789999999999999998777
Q ss_pred chHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 216 TVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 216 s~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.-.+.. ..--+-....+...+.++.+++ .||.|+..+=. . .+.++..+++|+|.|-++
T Consensus 94 ~r~e~TTegGldv~~~~~~l~~~i~~L~~--~gIrvSLFiDP----~----~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 94 KREELTTEGGLDVAGNRDRLKPVIKRLKD--AGIRVSLFIDP----D----PEQIEAAKELGADRVELH 152 (239)
T ss_dssp SGGGBSTTSSB-TCGGHHHHHHHHHHHHH--TT-EEEEEE-S---------HHHHHHHHHTT-SEEEEE
T ss_pred CCCCcCCCcCChhhcCHHHHHHHHHHHHh--CCCEEEEEeCC----C----HHHHHHHHHcCCCEEEEe
Confidence 655531 1000112356788889999999 99986554321 1 345677789999999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=85.77 E-value=15 Score=41.13 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=84.1
Q ss_pred CCchhHHHHHHHHHh--CCCcEEEEeccCCCCCC--CCcHHHHHHHHHHHHHhCCCcEEEEeecC--C--CC--C----H
Q 018731 131 PDPMEPENTAKAIAS--WGVDYIVLTSVDRDDIP--DGGSGHFARTVKAMKKQKPDIMVECLTSD--F--RG--D----L 196 (351)
Q Consensus 131 ~~~eei~~~~~~~~~--~G~~~I~ltgg~~~~l~--~~~~~~~~~li~~ik~~~p~i~i~~~~~~--~--~~--~----~ 196 (351)
+..++++.++..+.+ .|+..+-+.||-..+-. -.+ +.=++-++.+++..|++.+.++..+ . .. . +
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~-EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~ 628 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLH-EDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVK 628 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhc-CCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHH
Confidence 345567777777776 48888877777532110 000 1224567778888888776654322 1 10 1 3
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee------C--CCCHHHHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG------L--GESDDDLKEA 268 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG------l--gEt~e~~~~~ 268 (351)
..++..++.|+|.+-+ .++ -.+.+....+++.+++ .|..+...+.+- . -.|.+-+.+.
T Consensus 629 ~f~~~~~~~Gidifri-fD~-----------lN~~~n~~~~~~~~~~--~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ 694 (1143)
T TIGR01235 629 YFVKQAAQGGIDIFRV-FDS-----------LNWVENMRVGMDAVAE--AGKVVEAAICYTGDILDPARPKYDLKYYTNL 694 (1143)
T ss_pred HHHHHHHHcCCCEEEE-Ccc-----------CcCHHHHHHHHHHHHH--cCCEEEEEEEEeccCCCcCCCCCCHHHHHHH
Confidence 5677778889998743 111 2244455566777777 787766666542 1 2457777788
Q ss_pred HHHHHhCCCCEEee
Q 018731 269 MADLRSIDVDILTL 282 (351)
Q Consensus 269 l~~l~~lg~d~i~i 282 (351)
++.+.+.|+|.+.+
T Consensus 695 ak~l~~~Gad~I~i 708 (1143)
T TIGR01235 695 AVELEKAGAHILGI 708 (1143)
T ss_pred HHHHHHcCCCEEEE
Confidence 88888888887777
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.43 E-value=19 Score=33.10 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec-ch
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NI 214 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~-~i 214 (351)
+++.++.+.+.|++.+.+ ++|+ .+...++++..+++... .|-..+|.. +++.++.+.+..-+.|+. +.
T Consensus 106 ~e~f~~~~~~aGvdGvii-----pDLp---~ee~~~~~~~~~~~gl~-~I~lvap~t--~~eri~~i~~~s~gfIY~vs~ 174 (258)
T PRK13111 106 VERFAADAAEAGVDGLII-----PDLP---PEEAEELRAAAKKHGLD-LIFLVAPTT--TDERLKKIASHASGFVYYVSR 174 (258)
T ss_pred HHHHHHHHHHcCCcEEEE-----CCCC---HHHHHHHHHHHHHcCCc-EEEEeCCCC--CHHHHHHHHHhCCCcEEEEeC
Confidence 455677778899999998 3576 57888888888887322 343345543 578888888887776654 32
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC-CHHHHHHHHHHHHhCCCCEEeeec
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE-t~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
-...-. + ........+.++.+++. . ..-+++|+|- |.+++.+.+. . +|-+-++.
T Consensus 175 ~GvTG~----~--~~~~~~~~~~i~~vk~~-~----~~pv~vGfGI~~~e~v~~~~~----~-ADGviVGS 229 (258)
T PRK13111 175 AGVTGA----R--SADAADLAELVARLKAH-T----DLPVAVGFGISTPEQAAAIAA----V-ADGVIVGS 229 (258)
T ss_pred CCCCCc----c--cCCCccHHHHHHHHHhc-C----CCcEEEEcccCCHHHHHHHHH----h-CCEEEEcH
Confidence 111000 0 11122334455555551 1 3456789965 7788777653 3 67666653
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=85.27 E-value=27 Score=31.93 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE-EEEeecCCCCCHHHHHHHHHcCCCeeec-
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLTSDFRGDLRAVETLVHSGLDVFAH- 212 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~- 212 (351)
-+.+.++.+.+.|++.+.+ ++|+ .+...++.+..+++ ++. |-+.+|.. +++.++.+.+..-..|+.
T Consensus 94 G~~~F~~~~~~aGv~Gvii-----pDLP---~ee~~~~~~~~~~~--gl~~I~lv~Ptt--~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVV-----PDLP---LEETEALRAEAAKN--GIELVLLTTPTT--PTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHHHc--CCeEEEEeCCCC--CHHHHHHHHHhCCCcEEEe
Confidence 3456677788899999998 4576 57888888888887 553 44545543 577888888776565543
Q ss_pred chhchHHHHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCC-HHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 213 NIETVKRLQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 213 ~ies~~~~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt-~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+... +++. .....+..+.++.+++ . +..-+++|+|-+ .|++.+ +.+.|.|-+-++..+
T Consensus 162 s~~G-------vTG~~~~~~~~~~~~i~~vk~--~---~~~Pv~vGFGI~~~e~v~~----~~~~GADGvIVGSal 221 (250)
T PLN02591 162 SSTG-------VTGARASVSGRVESLLQELKE--V---TDKPVAVGFGISKPEHAKQ----IAGWGADGVIVGSAM 221 (250)
T ss_pred eCCC-------CcCCCcCCchhHHHHHHHHHh--c---CCCceEEeCCCCCHHHHHH----HHhcCCCEEEECHHH
Confidence 3211 1111 1123344555666665 2 245578899655 777654 567889988876443
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=85.23 E-value=32 Score=32.02 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=77.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+-+...++...+.+..-|.-.+...-.+. ++.+.+...++.+.+....+.+.. .-|.-.+.+.+....++|++.|.
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~vpv~l-hlDH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSIVPVAL-HLDHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCCCeEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 3555667777777777776655443321121 235778888888777652145433 32322367889999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEee-eeeC------C--CCHHHHHHHHHHHHhCCCC
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSI-MLGL------G--ESDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~-IvGl------g--Et~e~~~~~l~~l~~lg~d 278 (351)
+-- +..++++ ..+.++.++. .|+.+..-+ .+|- | .+..+..+..+++++.|+|
T Consensus 103 id~------------s~l~~~eni~~t~~v~~~a~~--~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD 168 (282)
T TIGR01859 103 IDG------------SHLPFEENLALTKKVVEIAHA--KGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVD 168 (282)
T ss_pred ECC------------CCCCHHHHHHHHHHHHHHHHH--cCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcC
Confidence 521 1223333 3355555566 677654322 1221 1 1122555667777778999
Q ss_pred EEee
Q 018731 279 ILTL 282 (351)
Q Consensus 279 ~i~i 282 (351)
.+.+
T Consensus 169 ~Lav 172 (282)
T TIGR01859 169 YLAA 172 (282)
T ss_pred EEee
Confidence 9885
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=14 Score=33.38 Aligned_cols=133 Identities=19% Similarity=0.201 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCC--------CCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDR--------DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~--------~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
+|+++.+.. .....++|.--.+ -++. +..+.+.++++.+++. ++.+..+.. -+.+.++.-++.
T Consensus 76 ~em~~ia~~---~kP~~vtLVPE~r~E~TTegGldv~-~~~~~l~~~i~~L~~~--gIrVSLFid---P~~~qi~~A~~~ 146 (239)
T PRK05265 76 EEMLDIALE---VKPHQVTLVPEKREELTTEGGLDVA-GQFDKLKPAIARLKDA--GIRVSLFID---PDPEQIEAAAEV 146 (239)
T ss_pred HHHHHHHHH---CCCCEEEECCCCCCCccCCccchhh-cCHHHHHHHHHHHHHC--CCEEEEEeC---CCHHHHHHHHHh
Confidence 555555544 4456676632111 1121 2357888899999886 778776652 167999999999
Q ss_pred CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 018731 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (351)
Q Consensus 206 G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~ 285 (351)
|.++|-+.-..+-..+..- ....++....+.+.+++ .|+.|++ |+|-+.+.+... ..+ -++..++++..
T Consensus 147 GAd~VELhTG~yA~a~~~~--~~~el~~~~~aa~~a~~--lGL~VnA----GHgLny~Nv~~i-~~i--p~i~EvnIGHs 215 (239)
T PRK05265 147 GADRIELHTGPYADAKTEA--EAAELERIAKAAKLAAS--LGLGVNA----GHGLNYHNVKPI-AAI--PGIEELNIGHA 215 (239)
T ss_pred CcCEEEEechhhhcCCCcc--hHHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHhHHHH-hhC--CCCeEEccCHH
Confidence 9999976443332211100 12246777788888888 8888664 677777776652 222 23566777655
Q ss_pred c
Q 018731 286 L 286 (351)
Q Consensus 286 l 286 (351)
+
T Consensus 216 i 216 (239)
T PRK05265 216 I 216 (239)
T ss_pred H
Confidence 4
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=85.09 E-value=30 Score=31.60 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC-CCC----CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~l----~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.++.+.+.|++-|-+.++.. +.. ...+.+++..+++.+++.. ++.+.+=| .+++.++.-.++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT----~~~~v~~aaL~~ 95 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDT----FNAEVAEAALKA 95 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC----CcHHHHHHHHHh
Confidence 5678899999999999999988866542 111 1123456778888887653 33443211 145566655556
Q ss_pred CCCeee
Q 018731 206 GLDVFA 211 (351)
Q Consensus 206 G~~~i~ 211 (351)
|.+.|+
T Consensus 96 g~~iIN 101 (258)
T cd00423 96 GADIIN 101 (258)
T ss_pred CCCEEE
Confidence 655443
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.98 E-value=15 Score=33.23 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCC-CC------CcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDI-PD------GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l-~~------~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+++++.+.. .....++|.--.+..+ .+ +..+.+.++++.+++. ++.+..+... +++.++.-++.|
T Consensus 73 ~emi~ia~~---vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~--gI~VSLFiDP---~~~qi~~A~~~G 144 (237)
T TIGR00559 73 EEMIRIAEE---IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAA--GIEVSLFIDA---DKDQISAAAEVG 144 (237)
T ss_pred HHHHHHHHH---cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhC
Confidence 455555544 3456676632221111 11 2346788889999886 7787765421 679999999999
Q ss_pred CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeec
Q 018731 207 LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQ 284 (351)
Q Consensus 207 ~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~ 284 (351)
.++|-+.-..+-. +...-+ ...++...++.+.+++ .|+.|++ |+|=|.+.+.... +-.+ +..++++.
T Consensus 145 Ad~VELhTG~YA~a~~~~~~--~~el~~i~~aa~~A~~--lGL~VnA----GHgLny~Nv~~i~---~~~~~i~EvnIGH 213 (237)
T TIGR00559 145 ADRIEIHTGPYANAYNKKEM--AEELQRIVKASVHAHS--LGLKVNA----GHGLNYHNVKYFA---EILPYLDELNIGH 213 (237)
T ss_pred cCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHhHHHHH---hCCCCceEEecCH
Confidence 9999765433322 111000 1246677778888888 8888664 5777777664432 3334 56777764
Q ss_pred cc
Q 018731 285 YL 286 (351)
Q Consensus 285 ~l 286 (351)
.+
T Consensus 214 si 215 (237)
T TIGR00559 214 AI 215 (237)
T ss_pred HH
Confidence 44
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.76 E-value=34 Score=31.90 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.+.+...++.+.+.+..-|.-.+.. .+...+.+.+..+++.+.+.. ++.|.+ .-|.-.+.+.+....++|+++|-+
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~--~~~~~g~~~~~~~~~~~A~~~-~vPV~l-HLDH~~~~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPT--NAQLSGYDYIYEIVKRHADKM-DVPVSL-HLDHGKTFEDVKQAVRAGFTSVMI 103 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHh--HHhhCCHHHHHHHHHHHHHHC-CCCEEE-ECcCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666777777776655433322 122234677888888877754 455433 333334778888889999999866
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeCCCC-------HHHHHHHHHHHHhCCCCEEee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGlgEt-------~e~~~~~l~~l~~lg~d~i~i 282 (351)
.--.. ++ ..+.+...+.++.++. .|+.|.+ +.+-|-.+. .-+..+..+|++++|+|.+.+
T Consensus 104 DgS~l-~~-------eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAv 172 (283)
T PRK07998 104 DGAAL-PF-------EENIAFTKEAVDFAKS--YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAV 172 (283)
T ss_pred eCCCC-CH-------HHHHHHHHHHHHHHHH--cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeeh
Confidence 21110 11 1133445577788888 8987644 444443110 125566789999999998776
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=35 Score=31.89 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=84.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-CcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+.+.+...++...+.+..-|.-++... +.. .+.+.+..+++.+.+... ++.|.+ .-|.-.+.+.+....++|+++
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~VPV~l-HLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGA--ARHMTGFKTVVAMVKALIEEMNITVPVAI-HLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcch--hhhcCCHHHHHHHHHHHHHHcCCCCcEEE-ECCCCCCHHHHHHHHHcCCCE
Confidence 356666777777777777555443322 222 246778888888877541 245433 334434789999999999999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeC-CC--C----HHHHHHHHHHHHhCCCCEE
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE--S----DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGl-gE--t----~e~~~~~l~~l~~lg~d~i 280 (351)
|-+.--.+ ++ ..+.+...+.++.++. .|+.|.+- .|-|- ++ . .-+-.+..+|+++.|+|.+
T Consensus 104 VM~DgS~l-p~-------eeNi~~Trevv~~Ah~--~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~L 173 (285)
T PRK07709 104 VMIDASHH-PF-------EENVETTKKVVEYAHA--RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL 173 (285)
T ss_pred EEEeCCCC-CH-------HHHHHHHHHHHHHHHH--cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEE
Confidence 86531111 01 1133344577778888 78876553 34333 11 0 2356788899999999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 174 Av 175 (285)
T PRK07709 174 AP 175 (285)
T ss_pred EE
Confidence 76
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=35 Score=31.85 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=79.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++.+.+.+..-|.-.+...-.+. +.+ +..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|++.|.
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~-~~~~~~~~a~~~-~vPV~l-HLDHg~~~e~i~~ai~~Gf~SVM 96 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDN-FFAYVRERAKRS-PVPFVI-HLDHGATIEDVMRAIRCGFTSVM 96 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHH-HHHHHHHHHHHC-CCCEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 4566677777777888876655443221122 233 777777776653 455433 33443478999999999999886
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee-eeeCCCC----------HHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLGLGES----------DDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-IvGlgEt----------~e~~~~~l~~l~~lg~d~i 280 (351)
+.--.++. ..+.+...+.++.++. .|+.+..-+ .+|..|. ..+..+..+++++.|+|.+
T Consensus 97 ~D~S~l~~--------eeNi~~t~~vv~~a~~--~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~L 166 (283)
T PRK08185 97 IDGSLLPY--------EENVALTKEVVELAHK--VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTL 166 (283)
T ss_pred EeCCCCCH--------HHHHHHHHHHHHHHHH--cCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEE
Confidence 53111110 0122333455666677 677654432 2343111 1155677888889999987
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 167 Av 168 (283)
T PRK08185 167 AV 168 (283)
T ss_pred Ee
Confidence 77
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=84.54 E-value=21 Score=33.41 Aligned_cols=173 Identities=19% Similarity=0.204 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.+.+...++++.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.|.+ .-|.-.+.+.+....++|+++|-
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~~~~~--~~~~~~~~~~~~~~~~a~~~-~vPVal-HLDH~~~~e~i~~ai~~GftSVM 101 (287)
T PF01116_consen 26 NLETARAVIEAAEELNSPVILQISPSE--VKYMGLEYLAAMVKAAAEEA-SVPVAL-HLDHGKDFEDIKRAIDAGFTSVM 101 (287)
T ss_dssp SHHHHHHHHHHHHHTTS-EEEEEEHHH--HHHHHHHHHHHHHHHHHHHS-TSEEEE-EEEEE-SHHHHHHHHHHTSSEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcchhh--hhhhhHHHHHHHHHHHHHHc-CCCEEe-ecccCCCHHHHHHHHHhCccccc
Confidence 457777888888888877665444321 11113567888888888775 566643 22222368999999999999986
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeC--C-CCH-------HHHHHHHHHHHhCCCCE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGL--G-ESD-------DDLKEAMADLRSIDVDI 279 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGl--g-Et~-------e~~~~~l~~l~~lg~d~ 279 (351)
+.--..+ + ..+.....+.++.+++ .|+.|.+ +.|-|. + ++. .+-.+..+|+++.|+|.
T Consensus 102 ~DgS~l~-~-------eeNi~~T~~vv~~ah~--~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~ 171 (287)
T PF01116_consen 102 IDGSALP-F-------EENIAITREVVEYAHA--YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDA 171 (287)
T ss_dssp EE-TTS--H-------HHHHHHHHHHHHHHHH--TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSE
T ss_pred ccCCcCC-H-------HHHHHHHHHHHHhhhh--hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCE
Confidence 5311111 1 1133344577888888 8887655 445544 1 111 25578889999999999
Q ss_pred EeeecccCCCCCccc-ccCCCCHHHHHHHHHHHHhc-CcceeccC
Q 018731 280 LTLGQYLQPTPLHLT-VKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (351)
Q Consensus 280 i~i~~~l~PTp~~~~-~~~~v~~~e~~~~~~~~~~~-G~~~~~~~ 322 (351)
+.+. +=.--..+.. ..+.+ +++.++++.+.. +...+.+|
T Consensus 172 LAva-iGt~HG~y~~~~~p~L---d~~~L~~I~~~~~~iPLVlHG 212 (287)
T PF01116_consen 172 LAVA-IGTAHGMYKGGKKPKL---DFDRLKEIREAVPDIPLVLHG 212 (287)
T ss_dssp EEE--SSSBSSSBSSSSSTC-----HHHHHHHHHHHHTSEEEESS
T ss_pred EEEe-cCccccccCCCCCccc---CHHHHHHHHHhcCCCCEEEEC
Confidence 7773 2111112211 01222 455565555555 55555443
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=29 Score=32.01 Aligned_cols=124 Identities=14% Similarity=0.217 Sum_probs=76.2
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE-EEEeecCCCCCHHHHHHHHHcCCCeeec-
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLTSDFRGDLRAVETLVHSGLDVFAH- 212 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~-i~~~~~~~~~~~e~l~~L~~aG~~~i~~- 212 (351)
-+++.++.+.+.|++.+.+ ++++ .++..++++.++++ ++. +-..+|.. +++.++.+.+..-..|+.
T Consensus 107 G~e~F~~~~~~aGvdgvii-----pDLP---~ee~~~~~~~~~~~--gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 107 GINKFIKKISQAGVKGLII-----PDLP---YEESDYLISVCNLY--NIELILLIAPTS--SKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred CHHHHHHHHHHcCCeEEEe-----cCCC---HHHHHHHHHHHHHc--CCCEEEEECCCC--CHHHHHHHHHhCCCcEEEE
Confidence 3456677778899999998 4576 47788888888887 443 33445543 678888877775445543
Q ss_pred chhchHHHHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCC-HHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 213 NIETVKRLQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 213 ~ies~~~~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt-~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+... .+|. ..-.++..+.++.+++ . +..-+.+|+|-+ .|++.+ +.+.|+|.+-++..+
T Consensus 175 S~~G-------vTG~~~~~~~~~~~~i~~ir~--~---t~~Pi~vGFGI~~~e~~~~----~~~~GADGvVVGSal 234 (263)
T CHL00200 175 STTG-------VTGLKTELDKKLKKLIETIKK--M---TNKPIILGFGISTSEQIKQ----IKGWNINGIVIGSAC 234 (263)
T ss_pred cCCC-------CCCCCccccHHHHHHHHHHHH--h---cCCCEEEECCcCCHHHHHH----HHhcCCCEEEECHHH
Confidence 2111 1111 1122345555556655 1 244577899655 666544 567899988886543
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=84.42 E-value=32 Score=31.25 Aligned_cols=140 Identities=16% Similarity=0.056 Sum_probs=80.0
Q ss_pred HHHHHhCCCcEEEEec-------cCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC----HHHHHHHHHcCCC
Q 018731 140 AKAIASWGVDYIVLTS-------VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGLD 208 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltg-------g~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~----~e~l~~L~~aG~~ 208 (351)
++.+.+.|++-++++| |.+| ...-.++.+.+.++.|.+.. .+.+.+=-+.+..+ .+.++.+.++|+.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD-~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPD-GGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCC-CCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3445566999888876 2222 22223566666666666542 22332211212123 3557888889999
Q ss_pred eeecchhchHHHHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeeeee-----CC-CCHHHHHHHHHHHHhCCCCEEe
Q 018731 209 VFAHNIETVKRLQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LG-ESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG-----lg-Et~e~~~~~l~~l~~lg~d~i~ 281 (351)
.|.+-=++.....-...+ .--+.++..+.|+.+++...++ ...-++.+ .| +..++..+-.+...+.|.|.+.
T Consensus 100 gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 100 GIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred EEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 987632222111000000 1237788888888887755553 33334444 44 6788888888888999999887
Q ss_pred e
Q 018731 282 L 282 (351)
Q Consensus 282 i 282 (351)
+
T Consensus 179 v 179 (243)
T cd00377 179 V 179 (243)
T ss_pred e
Confidence 7
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=84.39 E-value=28 Score=30.69 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=73.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+..++.+.++.+.+.|+..+.+..-+. ...+. .+.++.+++. .++.|.+ -++..+++.++.+.++|.+.+.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~g~----~~~~~~i~~~-v~iPi~~--~~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPK--YFQGS----LEDLRAVREA-VSLPVLR--KDFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCcc--ccCCC----HHHHHHHHHh-cCCCEEE--CCeecCHHHHHHHHHcCCCEEE
Confidence 456788899999999999987754332 22222 2455555554 2445543 3455677899999999999998
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
++.... ..+...+.++.++. .|+.+ ++.. .+.+++ +.+.+.+++.+.+.
T Consensus 100 l~~~~~------------~~~~~~~~~~~~~~--~g~~~----~v~v-~~~~e~----~~~~~~g~~~i~~t 148 (217)
T cd00331 100 LIVAAL------------DDEQLKELYELARE--LGMEV----LVEV-HDEEEL----ERALALGAKIIGIN 148 (217)
T ss_pred EeeccC------------CHHHHHHHHHHHHH--cCCeE----EEEE-CCHHHH----HHHHHcCCCEEEEe
Confidence 753221 22344455555566 67764 3322 355553 44556788887763
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=84.37 E-value=18 Score=33.48 Aligned_cols=14 Identities=0% Similarity=0.052 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHH
Q 018731 230 GYEQSLEVLKHAKL 243 (351)
Q Consensus 230 ~~~~~l~~i~~~~~ 243 (351)
+.++.++..+.+++
T Consensus 81 ~t~~~i~~a~~a~~ 94 (280)
T PLN02417 81 STREAIHATEQGFA 94 (280)
T ss_pred cHHHHHHHHHHHHH
Confidence 44455555555554
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=38 Score=32.05 Aligned_cols=137 Identities=11% Similarity=0.092 Sum_probs=81.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCC----------CCCCcHHHHHHHHHHHHHhCC-CcEEEEe-ecCCCC---C
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD----------IPDGGSGHFARTVKAMKKQKP-DIMVECL-TSDFRG---D 195 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~----------l~~~~~~~~~~li~~ik~~~p-~i~i~~~-~~~~~~---~ 195 (351)
.++++..+.++.+.+.|++.|-|-.|.|.. |- ...+.+.++++.+++..+ ++.|.+= ..+... .
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll-~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~ 150 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLL-KDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK 150 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhh-cCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH
Confidence 356777777777788899988776555421 11 125678899999998754 3443331 122211 2
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~ 273 (351)
.+.++.+.++|++.+.+.--+..+. ++++..++ +.++.+++. .++. ++|- -.|.++..+.+ .
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~---y~g~~~~~----~~i~~ik~~-~~iP-----Vi~nGdI~t~~da~~~l---~ 214 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDG---YRAEHINW----QAIGEIRQR-LTIP-----VIANGEIWDWQSAQQCM---A 214 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccC---CCCCcccH----HHHHHHHhh-cCCc-----EEEeCCcCCHHHHHHHH---h
Confidence 4677889999999998865443222 22122244 444455541 2443 2333 25667766655 4
Q ss_pred hCCCCEEeeec
Q 018731 274 SIDVDILTLGQ 284 (351)
Q Consensus 274 ~lg~d~i~i~~ 284 (351)
..|+|.|.++.
T Consensus 215 ~~g~DgVmiGR 225 (312)
T PRK10550 215 ITGCDAVMIGR 225 (312)
T ss_pred ccCCCEEEEcH
Confidence 68999999874
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=84.30 E-value=7.3 Score=35.39 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++++.+.++.+.+.|++.|++..-..... .+.+.++++.+++..+++.+.+- +++.-+--.-.-...++|++.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~ 218 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLAT----PEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADR 218 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcC----HHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCE
Confidence 4577888889988999999998843222222 37899999999998776655532 333222333334445789999
Q ss_pred eecch
Q 018731 210 FAHNI 214 (351)
Q Consensus 210 i~~~i 214 (351)
|-.++
T Consensus 219 id~s~ 223 (265)
T cd03174 219 VDGSV 223 (265)
T ss_pred EEecc
Confidence 86543
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.29 E-value=21 Score=32.07 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
.+.++.+.+.|.+.|--|+-..+.. |. +.+-.++++.+++ +|++..-+++|+. .-++....+|...|.+--.
T Consensus 43 veLI~~Lse~Gl~~vEtTSFVSpKWVPQ--l~D~~ev~k~i~~-~~Gv~yPVLtPNl----kGf~~AvaaGa~EvavFga 115 (316)
T KOG2368|consen 43 VELIDRLSECGLQVVETTSFVSPKWVPQ--LADHNEVMKGIRK-FPGVSYPVLTPNL----KGFEAAVAAGAEEVAVFGA 115 (316)
T ss_pred HHHHHHHHHcCCceeeeecccCcccccc--ccchHHHHHhhhc-CCCccccccCcch----hhHHHHHhcCceeEEeeeh
Confidence 6788888999999886655432211 11 2344577777776 6888877778753 5667778899998875211
Q ss_pred chHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eeeeeC-C---CCHHHHHHHHHHHHhCCCCEEeeeccc-
Q 018731 216 TVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGL-G---ESDDDLKEAMADLRSIDVDILTLGQYL- 286 (351)
Q Consensus 216 s~~~~~--~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~IvGl-g---Et~e~~~~~l~~l~~lg~d~i~i~~~l- 286 (351)
..+.+. .+.+.-..+.+++...++.+++ .++++.. ...+|- - -+++-+.+..+.+.++|...|+++..+
T Consensus 116 ASe~FslkNiNctiees~~rf~~v~kaA~~--~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIG 193 (316)
T KOG2368|consen 116 ASEAFSLKNINCTIEESLKRFMEVLKAAQE--HNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIG 193 (316)
T ss_pred hhhhhhhccCCccHHHHHHHHHHHHHHHHH--cCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcEEEecccccc
Confidence 122221 2222001255566677788888 8998755 446776 2 467888899999999999888876554
Q ss_pred CCCCCc
Q 018731 287 QPTPLH 292 (351)
Q Consensus 287 ~PTp~~ 292 (351)
.-||..
T Consensus 194 vGTpgt 199 (316)
T KOG2368|consen 194 VGTPGT 199 (316)
T ss_pred cCCchh
Confidence 125554
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=84.10 E-value=7 Score=36.23 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=51.3
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEecc-CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCC-CCC-HHHHHHHHHc
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-RGD-LRAVETLVHS 205 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg-~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~-~~~-~e~l~~L~~a 205 (351)
.+.+++|+.+.+.+..+.|..-+.+=.= +.+--+....+.+.++++.|++..|++-+...+... ..+ ++.++.+...
T Consensus 21 lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp S--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 4467899999999999999886655211 101011123689999999999998998777644331 223 4455555444
Q ss_pred CCCeeecch
Q 018731 206 GLDVFAHNI 214 (351)
Q Consensus 206 G~~~i~~~i 214 (351)
..+..+++.
T Consensus 101 ~pd~asl~~ 109 (272)
T PF05853_consen 101 KPDMASLNP 109 (272)
T ss_dssp --SEEEEE-
T ss_pred CCCeEEecc
Confidence 677776644
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.93 E-value=6.8 Score=35.62 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++++++..-+.. .. +...-.++++.|.+.. ..+. ..++..+.+.++.+.++|++++.+
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a-~~--g~~~n~~~i~~i~~~~--~~v~--vGGGIrs~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKA-IE--NSVENLPVLEKLSEFA--EHIQ--IGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCc-cc--CCcchHHHHHHHHhhc--CcEE--EecCCCCHHHHHHHHHCCCCEEEE
Confidence 357888899999999999998655431 11 1234567777777653 2333 255666899999999999999988
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee----e--eC-CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM----L--GL-GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I----v--Gl-gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|-++++. . +.++.+...- .-+-++.++- + |- ..+.-+..+.++.+.++|+..+-+.
T Consensus 102 gT~a~~~-----------p-~~l~~~~~~~---~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~t 164 (241)
T PRK14114 102 SSKVLED-----------P-SFLKFLKEID---VEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHT 164 (241)
T ss_pred CchhhCC-----------H-HHHHHHHHhC---CCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 7655432 1 0111111100 1122333321 1 21 2344556777888889998876663
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.83 E-value=30 Score=31.08 Aligned_cols=124 Identities=21% Similarity=0.236 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCCeeecch
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~~i~~~i 214 (351)
+++-++.+.+.|++.|++..-+.+.--| .+.+.++++.-... +++++-. =|...| .+.++.+.+.|+.+|--+
T Consensus 75 M~~DI~~~~~lG~~GVV~G~lt~dg~iD--~~~le~Li~aA~gL--~vTFHrA-FD~~~d~~~ale~li~~Gv~RILTs- 148 (241)
T COG3142 75 MLEDIRLARELGVQGVVLGALTADGNID--MPRLEKLIEAAGGL--GVTFHRA-FDECPDPLEALEQLIELGVERILTS- 148 (241)
T ss_pred HHHHHHHHHHcCCCcEEEeeecCCCccC--HHHHHHHHHHccCC--ceeeehh-hhhcCCHHHHHHHHHHCCCcEEecC-
Confidence 3566677788999999986554332222 45566655543322 3444310 011113 489999999999998421
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+...+..+-+..++.+.+...| ...+|.|-|-+.+.+.+.. ..+|+..++.
T Consensus 149 -----------Gg~~sa~eg~~~l~~li~~a~g---ri~Im~GaGV~~~N~~~l~---~~tg~~e~H~ 199 (241)
T COG3142 149 -----------GGKASALEGLDLLKRLIEQAKG---RIIIMAGAGVRAENIAELV---LLTGVTEVHG 199 (241)
T ss_pred -----------CCcCchhhhHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHH---HhcCchhhhh
Confidence 1112333333333333321112 3457888888888776543 4566665555
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.72 E-value=8.4 Score=35.48 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEe-ecCCCCCHHHHHHHHHcCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECL-TSDFRGDLRAVETLVHSGL 207 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~-~~~~~~~~e~l~~L~~aG~ 207 (351)
.+++.+.+.++.+.+.|+..|.|..-..... .+.+.++++.+++.+++ +.+..- +++.-+.-.-.-...++|+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~ 215 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDTVGYLT----PEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGA 215 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCC----HHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCC
Confidence 4577888899999999999999843222212 37899999999998775 555432 3332122222333447899
Q ss_pred Ceeecch
Q 018731 208 DVFAHNI 214 (351)
Q Consensus 208 ~~i~~~i 214 (351)
+.|-.++
T Consensus 216 ~~iD~s~ 222 (268)
T cd07940 216 RQVECTI 222 (268)
T ss_pred CEEEEEe
Confidence 9985443
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=83.69 E-value=24 Score=33.72 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEe-ecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECL-TSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~-~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++++.+.++.+.+.|+..|++..-..-.+| +.+.++++.+++..+ ++.+..- +++.-+.-.-.-...++|++
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P----~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 215 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLP----DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGAT 215 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCCCCCCH----HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCC
Confidence 45688899999999999999999543332233 789999999998753 4544431 33322233333334579999
Q ss_pred eeecch
Q 018731 209 VFAHNI 214 (351)
Q Consensus 209 ~i~~~i 214 (351)
+|-.++
T Consensus 216 ~iD~Sl 221 (333)
T TIGR03217 216 RIDASL 221 (333)
T ss_pred EEEeec
Confidence 985443
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ] | Back alignment and domain information |
|---|
Probab=83.52 E-value=10 Score=34.89 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCCcEEE-EeecC----------C---CCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHH
Q 018731 168 HFARTVKAMKKQKPDIMVE-CLTSD----------F---RGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQ 233 (351)
Q Consensus 168 ~~~~li~~ik~~~p~i~i~-~~~~~----------~---~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~ 233 (351)
.+..+-+.+++.+|+..|. ++|+. + ..-.+.|..|++.|++.|.+ + .++ ++ |+..|++
T Consensus 19 ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~V--Q---plh-ii--pG~Ey~~ 90 (262)
T PF06180_consen 19 TIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVV--Q---PLH-II--PGEEYEK 90 (262)
T ss_dssp HHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEE--E---E---SC--SSHHHHH
T ss_pred HHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEE--e---ecc-ee--CcHhHHH
Confidence 6777888888889998765 44532 1 11247888899999888754 1 111 22 4667777
Q ss_pred HHHHHHHHHHhCCCCeEEEeeee--eCCCCHHHHHHHHHHHHh
Q 018731 234 SLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRS 274 (351)
Q Consensus 234 ~l~~i~~~~~~~~Gi~v~~~~Iv--GlgEt~e~~~~~l~~l~~ 274 (351)
..+.++..+..|..+.++.-++. |..++.+|+.+.++.|.+
T Consensus 91 l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~ 133 (262)
T PF06180_consen 91 LRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAE 133 (262)
T ss_dssp HHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHH
Confidence 77776655432222223332222 334567787777777765
|
Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=83.44 E-value=37 Score=33.46 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCC--------CCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHH
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIP--------DGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLV 203 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~--------~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~ 203 (351)
++++.+.++.+.+.|++.|-|--+-|.... ....+.+.++++.+++.. ..+.+.+ +++.....+.++.+.
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl-~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKL-TPNITDIREPARAAK 190 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEc-CCCcccHHHHHHHHH
Confidence 577778888887888887766333321010 023578889999998753 1244444 454432357888899
Q ss_pred HcCCCeeec----------chhchH--H-HH-h----hhcCCCCCHHHHHHHHHHHHHhCC--CCeEEEeeeeeC-C-CC
Q 018731 204 HSGLDVFAH----------NIETVK--R-LQ-R----IVRDPRAGYEQSLEVLKHAKLSKK--GLITKSSIMLGL-G-ES 261 (351)
Q Consensus 204 ~aG~~~i~~----------~ies~~--~-~~-~----~~r~~~~~~~~~l~~i~~~~~~~~--Gi~v~~~~IvGl-g-Et 261 (351)
++|++.|.+ .+++.. . ++ + .+.++ .-..-.++.+..+++... ++. |+|. | .|
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~-a~~p~~l~~v~~~~~~~~~~~ip-----Iig~GGI~s 264 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGP-AVKPIALNMVAEIARDPETRGLP-----ISGIGGIET 264 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccch-hhhHHHHHHHHHHHhccccCCCC-----EEeecCcCC
Confidence 999999872 223211 1 11 1 11110 112234666666665211 333 4555 2 56
Q ss_pred HHHHHHHHHHHHhCCCCEEeee
Q 018731 262 DDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 262 ~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+|..+.+ . .|.+.|.++
T Consensus 265 ~~da~e~i---~-aGA~~Vqi~ 282 (420)
T PRK08318 265 WRDAAEFI---L-LGAGTVQVC 282 (420)
T ss_pred HHHHHHHH---H-hCCChheee
Confidence 66665554 3 888887775
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=83.35 E-value=10 Score=38.21 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=53.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEee-cCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLT-SDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~-~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++...+.++.+.+.|++.|.|..-..- +. ...+.++++.+++..| ++.|++-+ ++.-+.-...-.-.++|++
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGl-l~---P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad 227 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAAL-LK---PQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD 227 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccC-CC---HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence 36778889999999999999999433221 22 4789999999999875 65555422 2221233444445789999
Q ss_pred eeecch
Q 018731 209 VFAHNI 214 (351)
Q Consensus 209 ~i~~~i 214 (351)
.|-.++
T Consensus 228 ~vDtai 233 (499)
T PRK12330 228 VVDTAI 233 (499)
T ss_pred EEEeec
Confidence 986433
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=83.19 E-value=12 Score=33.92 Aligned_cols=87 Identities=8% Similarity=0.015 Sum_probs=64.7
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
|.-.+..+.++|++.+.++=-.....+ .+.+. ..++++.+..++.+.+..+...+.+|+-.|+|++.++..++.+.+.
T Consensus 21 D~~sA~i~e~aG~dai~v~~s~~a~~~-G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~ 99 (240)
T cd06556 21 DYSMAKQFADAGLNVMLVGDSQGMTVA-GYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFM 99 (240)
T ss_pred CHHHHHHHHHcCCCEEEEChHHHHHhc-CCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 777888899999999987522221111 11121 3589999999998886333457899999999888889999999888
Q ss_pred hCCCCEEee
Q 018731 274 SIDVDILTL 282 (351)
Q Consensus 274 ~lg~d~i~i 282 (351)
+.|++-+.+
T Consensus 100 ~aGa~gv~i 108 (240)
T cd06556 100 RAGAAGVKI 108 (240)
T ss_pred HcCCcEEEE
Confidence 899988777
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.07 E-value=9.8 Score=34.83 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-..... .+.+.++++.+++..| +.+.+- +++.-+.....-...++|++.
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~ 210 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGILD----PFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATH 210 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC----HHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 4578888999999999999999843222222 3789999999998765 444431 333222333333345799999
Q ss_pred eecchhchHHHHhhhcCCCCCHHHHHHHHHH
Q 018731 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKH 240 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~ 240 (351)
|-.++-.+= +.. .....++.+..++.
T Consensus 211 vd~s~~G~G---~~a--GN~~tE~lv~~l~~ 236 (259)
T cd07939 211 VSVTVNGLG---ERA--GNAALEEVVMALKH 236 (259)
T ss_pred EEEeccccc---ccc--cCcCHHHHHHHHHH
Confidence 865433321 110 02356666665543
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=83.02 E-value=17 Score=33.25 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEee
Q 018731 261 SDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 261 t~e~~~~~l~~l~~lg~d~i~i 282 (351)
..|+..+....+++.|++.|.+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEE
Confidence 3456666666666667666554
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=82.93 E-value=18 Score=32.54 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHh
Q 018731 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLS 244 (351)
Q Consensus 166 ~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~ 244 (351)
.+.+.++++.+++. ++.+..+... +.+.++.-++.|.++|-+.-..+-..+ ..-+ ...++...++.+.+++
T Consensus 109 ~~~l~~~i~~l~~~--gI~VSLFiDP---d~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~--~~el~~i~~aa~~a~~- 180 (234)
T cd00003 109 AEKLKPIIERLKDA--GIRVSLFIDP---DPEQIEAAKEVGADRVELHTGPYANAYDKAER--EAELERIAKAAKLARE- 180 (234)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH-
Confidence 57888899999886 7777765421 679999999999999976543322211 1000 1246777788888888
Q ss_pred CCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 245 ~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.|+.|++ |+|-|.+.+..... + -++..++++..+
T Consensus 181 -~GL~VnA----GHgLny~Nv~~i~~-i--p~i~ElnIGHsi 214 (234)
T cd00003 181 -LGLGVNA----GHGLNYENVKPIAK-I--PGIAELNIGHAI 214 (234)
T ss_pred -cCCEEec----CCCCCHHHHHHHHh-C--CCCeEEccCHHH
Confidence 8888664 57777777655443 2 235566665443
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=82.67 E-value=33 Score=30.14 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=48.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
++....+.++.+.+.|++.|.|.-.+....++ .....+.++.+++..+ .+.+.+.+.+ ..+.++.+.++|++.+
T Consensus 14 ~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~v~d---~~~~i~~~~~~g~d~v 88 (220)
T PRK05581 14 DFARLGEEVKAVEAAGADWIHVDVMDGHFVPN--LTIGPPVVEAIRKVTKLPLDVHLMVEN---PDRYVPDFAKAGADII 88 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCccCCcCCC--cCcCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCEE
Confidence 44566778888899999999884322221121 1234567778876543 2345554543 3467788889999997
Q ss_pred ecc
Q 018731 211 AHN 213 (351)
Q Consensus 211 ~~~ 213 (351)
.+.
T Consensus 89 ~vh 91 (220)
T PRK05581 89 TFH 91 (220)
T ss_pred EEe
Confidence 654
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=82.66 E-value=32 Score=29.94 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=59.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEeecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~--i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++...+.++.+.+.|++.|.|.-.+.+..++ ...-.+.++.+++. ++.. +.+.+.+ ..+.++.++++|.|
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~-~~~~v~v~lm~~~---~~~~~~~~~~~gad 81 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKY-TDLPIDVHLMVEN---PDRYIEDFAEAGAD 81 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhc-CCCcEEEEeeeCC---HHHHHHHHHHcCCC
Confidence 345667788888899999999884222222222 22345777788764 3333 4444432 45789999999999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
.+.+..+. .++..+.++.+++ .|+.+
T Consensus 82 gv~vh~~~--------------~~~~~~~~~~~~~--~g~~~ 107 (210)
T TIGR01163 82 IITVHPEA--------------SEHIHRLLQLIKD--LGAKA 107 (210)
T ss_pred EEEEccCC--------------chhHHHHHHHHHH--cCCcE
Confidence 97653211 1233455566776 67653
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ] | Back alignment and domain information |
|---|
Probab=82.58 E-value=4 Score=37.64 Aligned_cols=172 Identities=16% Similarity=0.211 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc-EEEEeecCCCC-----CHHHHHHHHHcCC
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI-MVECLTSDFRG-----DLRAVETLVHSGL 207 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i-~i~~~~~~~~~-----~~e~l~~L~~aG~ 207 (351)
..+.+.++.+.+.|+++|++++-.- ++. ..+.++.+.+++...++ .+.+-.|.... +.+-++.+.++=.
T Consensus 58 ~~~~eaL~~L~~~G~~~V~VQplhi--ipG---~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~ 132 (262)
T PF06180_consen 58 DSPEEALAKLADEGYTEVVVQPLHI--IPG---EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALA 132 (262)
T ss_dssp --HHHHHHHHHHCT--EEEEEE--S--CSS---HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEeecce--eCc---HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHH
Confidence 4455666777899999999987653 554 45556666666543222 45554454321 3555554444311
Q ss_pred CeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 208 DVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 208 ~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+.+.-. .-++ +--+-.|..+........++...+. .|. -++.+|.=|..-++.+.+..+++.|+..+.+.+|+
T Consensus 133 ~~~~~~--~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~-~~~---~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlM 206 (262)
T PF06180_consen 133 EEFPKK--RKDEAVVLMGHGTPHPANAAYSALQAMLKK-HGY---PNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLM 206 (262)
T ss_dssp CCS-TT---TTEEEEEEE---SCHHHHHHHHHHHHHHC-CT----TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEES
T ss_pred Hhcccc--CCCCEEEEEeCCCCCCccHHHHHHHHHHHh-CCC---CeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecc
Confidence 111100 0001 0000012233444455555555431 332 23345542323347777888888999998887665
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 287 ~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.-...| ....+.-++-+-|+..++..||.-
T Consensus 207 lVAGdH--a~nDmaGde~dSWks~L~~~G~~v 236 (262)
T PF06180_consen 207 LVAGDH--AKNDMAGDEEDSWKSRLEAAGFEV 236 (262)
T ss_dssp SS--HH--HHCCCCSSSTTSHHHHHHHTT-EE
T ss_pred cccchh--hhhhhcCCCcchHHHHHHHCCCEE
Confidence 222222 112222223356888999999963
|
Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=82.51 E-value=16 Score=33.47 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=12.4
Q ss_pred EEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 152 VLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 152 ~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+++.|+|+ .+...++++.+.+.
T Consensus 15 y~~aG~P~------~~~~~~~~~~l~~~ 36 (256)
T TIGR00262 15 FVTAGDPT------LETSLEIIKTLIEA 36 (256)
T ss_pred EEeCCCCC------HHHHHHHHHHHHHc
Confidence 56666652 24566666666554
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=82.38 E-value=34 Score=30.04 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=92.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHH-HHHHhCCCcEEEEe--ecCCCCC-H---HHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVK-AMKKQKPDIMVECL--TSDFRGD-L---RAVETLV 203 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~-~ik~~~p~i~i~~~--~~~~~~~-~---e~l~~L~ 203 (351)
.+.+++.+.++.+.+.|+..++++- .+.+.++ .++. .++.+.+. .|.+..+ + ..++...
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p------------~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNP------------CFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcH------------HHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 4568899999998888999988731 2333322 2222 23444432 2322212 1 3466777
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+.|.|.+-+.+.-. ... ...++..++-+..+++...|+.+.. |+.. .-+.+++....+...++|+|++-.
T Consensus 80 ~~GAdevdvv~~~g-----~~~--~~~~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 80 ADGADEIDMVINIG-----ALK--SGDYEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred HcCCCEEEEeecHH-----HHh--CCCHHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 78999885533211 121 4567777777777777555777666 5555 356788999999999999998877
Q ss_pred ecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 283 GQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 283 ~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
+ |.+. ....+++....+++...
T Consensus 151 s-----TG~~---~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 151 S-----TGFG---PGGATVEDVKLMKEAVG 172 (203)
T ss_pred C-----CCCC---CCCCCHHHHHHHHHHhC
Confidence 3 2221 12355666666665554
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.19 E-value=41 Score=31.98 Aligned_cols=137 Identities=23% Similarity=0.214 Sum_probs=81.5
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC----------CCCCCCcHHHHHHHHHHHHHhCCCc--EEEEeec--CC-CCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR----------DDIPDGGSGHFARTVKAMKKQKPDI--MVECLTS--DF-RGD 195 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~----------~~l~~~~~~~~~~li~~ik~~~p~i--~i~~~~~--~~-~~~ 195 (351)
.+|+...+.++.+.+.|+..|-|--|-| ..|- .+.+.+.++++++++..+++ ++.+-.. +. ...
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll-~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~ 154 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALL-KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILA 154 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhc-CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccH
Confidence 4566666777777888988887754443 1121 23688999999999876433 4433111 11 123
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC--CHHHHHHHHHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE--SDDDLKEAMADLR 273 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE--t~e~~~~~l~~l~ 273 (351)
.+.++.+.++|++.+.+.--|....+. + ..+| +.|..+++..+.+. ++|-|+ |.++..+.+ .
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~---~-~ad~----~~I~~vk~~~~~ip-----vi~NGdI~s~~~a~~~l---~ 218 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYL---G-PADW----DYIKELKEAVPSIP-----VIANGDIKSLEDAKEML---E 218 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCC---C-ccCH----HHHHHHHHhCCCCe-----EEeCCCcCCHHHHHHHH---H
Confidence 468899999999999876555433321 1 2344 44444554222333 344443 666665554 4
Q ss_pred hCCCCEEeeec
Q 018731 274 SIDVDILTLGQ 284 (351)
Q Consensus 274 ~lg~d~i~i~~ 284 (351)
..|+|-+.++.
T Consensus 219 ~tg~DgVMigR 229 (323)
T COG0042 219 YTGADGVMIGR 229 (323)
T ss_pred hhCCCEEEEcH
Confidence 67899888763
|
|
| >PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.14 E-value=16 Score=34.23 Aligned_cols=110 Identities=18% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCC---CC-H---HHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFR---GD-L---RAVETL 202 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~---~~-~---e~l~~L 202 (351)
.+..++...+..+.+.|++.|...+|+++...+....+-.++++.|++.. -.+.+.++ |.+. .+ + +.++.=
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~y-Peghp~~~~~~~dl~~Lk~K 172 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAY-PEVHPEAKSAQADLINLKRK 172 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeC-CCCCCCCCCHHHHHHHHHHH
Confidence 35678888888889999999988888865333222233447777777641 12333332 2211 11 2 234444
Q ss_pred HHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
.++|.+.+ ..+ .-++.+...+.++.+++ .|+. .-++.|+
T Consensus 173 ~~aGA~~~------iTQ-------~~Fd~~~~~~f~~~~~~--~Gi~--vPIi~GI 211 (296)
T PRK09432 173 VDAGANRA------ITQ-------FFFDVESYLRFRDRCVS--AGID--VEIVPGI 211 (296)
T ss_pred HHcCCCee------ecc-------cccchHHHHHHHHHHHH--cCCC--CCEEeec
Confidence 46777643 111 24566667777777777 7753 3456666
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.13 E-value=13 Score=35.28 Aligned_cols=133 Identities=24% Similarity=0.250 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
..+.++.+.+.|++.|.+...... .+...++++.+++..|++.|-+ +...+.+.+..+.++|+|.|.+++-
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~------~~~~~~~i~~ik~~~p~v~Vi~---G~v~t~~~A~~l~~aGaD~I~vg~g 165 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGH------SVYVIEMIKFIKKKYPNVDVIA---GNVVTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC------cHHHHHHHHHHHHHCCCceEEE---CCCCCHHHHHHHHhcCCCEEEECCC
Confidence 345667777889998887543321 1567889999999877655543 2234889999999999999876432
Q ss_pred chHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.... ..+...+. ..++.-..+..+.+.+ .++.+-++ |=-.+..++.+.+ .+|.+.+.++..+
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~--~~vpVIA~---GGI~~~~di~kAl----a~GA~~VmiGt~f 229 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAARD--YGVPVIAD---GGIRTSGDIVKAL----AAGADAVMLGSLL 229 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHHhh--cCCcEEec---CCCCCHHHHHHHH----HcCCCEEEecchh
Confidence 1111 11111101 1244444444444444 45553221 1123456666554 4899988886544
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=82.11 E-value=27 Score=31.23 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred eeeEEEEeeccCCCCCCcCcccCC-CCCCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 101 IATATIMLLGDTCTRGCRFCAVKT-SRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 101 ~~~~~~i~~s~gC~~~C~FC~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+...+++.+..+|. +.. +......+++++..-+.....+|.+-|++- +... ..+ .++++.+++.
T Consensus 108 ~i~~gYiv~~~~~~-------v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe-~SG~-~~~------~e~I~~v~~~ 172 (219)
T cd02812 108 LIPEGYLVLNPDST-------VARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLE-YSGA-YGP------PEVVRAVKKV 172 (219)
T ss_pred ccceEEEEECCCCc-------eeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeC-CCCC-cCC------HHHHHHHHHh
Confidence 34567777766663 222 221224567788888877788897777775 3221 121 4556666665
Q ss_pred CCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
..++.+.+ .++..+.+.++.+.++|.|.|-+|
T Consensus 173 ~~~~pl~v--GGGIrs~e~a~~l~~aGAD~VVVG 204 (219)
T cd02812 173 LGDTPLIV--GGGIRSGEQAKEMAEAGADTIVVG 204 (219)
T ss_pred cCCCCEEE--eCCCCCHHHHHHHHHcCCCEEEEC
Confidence 32444433 556679999999999999999775
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=82.07 E-value=6.9 Score=34.54 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEee-cCCCCC-HHHHHHHHHcCCCeeec
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGD-LRAVETLVHSGLDVFAH 212 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~-~~~~~~-~e~l~~L~~aG~~~i~~ 212 (351)
.+.+.++.+.+.|++.++|.--+++.-- +.+...++++..+ ++.+..-. -|...+ .+.++.|.+.|+++|.=
T Consensus 73 ~M~~dI~~~~~~GadG~VfG~L~~dg~i--D~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLT 146 (201)
T PF03932_consen 73 IMKEDIRMLRELGADGFVFGALTEDGEI--DEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLT 146 (201)
T ss_dssp HHHHHHHHHHHTT-SEEEE--BETTSSB---HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHcCCCeeEEEeECCCCCc--CHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEEC
Confidence 4466777788899999998543332112 2456666666654 34443211 122223 57899999999999832
Q ss_pred --chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 213 --NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 213 --~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
+..+. ....+...+.++.++ ..| .+|.|=|=+.+.+.+.++ +.|+..++.
T Consensus 147 SGg~~~a----------~~g~~~L~~lv~~a~---~~i----~Im~GgGv~~~nv~~l~~---~tg~~~~H~ 198 (201)
T PF03932_consen 147 SGGAPTA----------LEGIENLKELVEQAK---GRI----EIMPGGGVRAENVPELVE---ETGVREIHG 198 (201)
T ss_dssp STTSSST----------TTCHHHHHHHHHHHT---TSS----EEEEESS--TTTHHHHHH---HHT-SEEEE
T ss_pred CCCCCCH----------HHHHHHHHHHHHHcC---CCc----EEEecCCCCHHHHHHHHH---hhCCeEEee
Confidence 21110 123333333333322 334 477776666655554433 477777766
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=82.01 E-value=30 Score=31.08 Aligned_cols=95 Identities=14% Similarity=0.191 Sum_probs=56.3
Q ss_pred eEEEEeeccCCCCCCcCcccCC-CC-CCCCCCchhHHHHHHHHHh-CCCcEEEEecc--CCCCCCCCcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKT-SR-NPAPPDPMEPENTAKAIAS-WGVDYIVLTSV--DRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~-~~-~~~~~~~eei~~~~~~~~~-~G~~~I~ltgg--~~~~l~~~~~~~~~~li~~ik 177 (351)
..+++.+..+|. +.. ++ .+.+.+.+++........+ +|.+-++|-.| -+...+ .++++.++
T Consensus 109 p~gYiv~~~~~~-------v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~-------~e~i~~v~ 174 (223)
T TIGR01768 109 PEGYIIVNPGGA-------AARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP-------PELVAEVK 174 (223)
T ss_pred ceEEEEECCCcc-------eeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC-------HHHHHHHH
Confidence 456666666652 222 12 1233455665544443333 69999998532 221111 35566666
Q ss_pred HhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 178 KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 178 ~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+...++.+.. .++..+.+.++.+.++|.|+|.+|
T Consensus 175 ~~~~~~pl~v--GGGIrs~e~a~~l~~aGAD~VVVG 208 (223)
T TIGR01768 175 KVLDKARLFV--GGGIRSVEKAREMAEAGADTIVTG 208 (223)
T ss_pred HHcCCCCEEE--ecCCCCHHHHHHHHHcCCCEEEEC
Confidence 6543445443 556679999999999999999775
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=81.91 E-value=23 Score=32.05 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEeeecccCC-CCCcccccCCCCHHHHHHHHHHHH-hcCcceecc
Q 018731 261 SDDDLKEAMADLRSIDVDILTLGQYLQP-TPLHLTVKEYVTPEKFDFWKAYGE-SIGFRYVAS 321 (351)
Q Consensus 261 t~e~~~~~l~~l~~lg~d~i~i~~~l~P-Tp~~~~~~~~v~~~e~~~~~~~~~-~~G~~~~~~ 321 (351)
..|+..+.++.+++.|++.+.+ +.| |+ .++++.++. ..||.++.+
T Consensus 114 ~~ee~~~~~~~~~~~g~~~i~~---i~P~T~-------------~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 114 PPEEAEEFREAAKEYGLDLIFL---VAPTTP-------------DERIKKIAELASGFIYYVS 160 (242)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE---eCCCCC-------------HHHHHHHHhhCCCCEEEEe
Confidence 3456667777777777765554 134 22 223444454 678887654
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=81.74 E-value=10 Score=35.73 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCCeeecchhchHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHH
Q 018731 197 RAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~--~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~ 273 (351)
+.++.+.+.|++.|-+|.=-..+ ..+.-.|- -.+++...+.++.+++. .++.++.-+=+|..++.++..+.++.+.
T Consensus 70 ~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-~~~pvsvKiR~g~~~~~~~~~~~~~~l~ 148 (309)
T PF01207_consen 70 EAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-VPIPVSVKIRLGWDDSPEETIEFARILE 148 (309)
T ss_dssp HHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHH
T ss_pred HHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-cccceEEecccccccchhHHHHHHHHhh
Confidence 34455555678887766543222 11110000 12677777777777753 4688888888998878888999999999
Q ss_pred hCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcceeccC
Q 018731 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (351)
Q Consensus 274 ~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~~~~~ 322 (351)
+.|++.+++... |+.+. +-.+..++.++++.+.+....+..|
T Consensus 149 ~~G~~~i~vH~R---t~~q~----~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 149 DAGVSAITVHGR---TRKQR----YKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp HTT--EEEEECS----TTCC----CTS---HHHHHHCHHC-TSEEEEES
T ss_pred hcccceEEEecC---chhhc----CCcccchHHHHHHhhcccceeEEcC
Confidence 999999999522 44431 1123344444444444444333333
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=81.54 E-value=30 Score=32.29 Aligned_cols=82 Identities=20% Similarity=0.108 Sum_probs=50.3
Q ss_pred HHHHHHHHcC-CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG-~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l 275 (351)
+.++.+.++| +|.|-+|+-+.+.-+-... -..+.+...+.++.+++.. ++.+. +-+.-+.+++.+.++.+.+.
T Consensus 108 ~~a~~~~~aG~~D~iElN~~cP~~~~gg~~-~~~~~~~~~eiv~~vr~~~-~~pv~----vKl~~~~~~~~~~a~~l~~~ 181 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISCPNVKHGGMA-FGTDPELAYEVVKAVKEVV-KVPVI----VKLTPNVTDIVEIAKAAEEA 181 (301)
T ss_pred HHHHHHhccCCcCEEEEECCCCCCCCCccc-cccCHHHHHHHHHHHHHhc-CCCEE----EEcCCCchhHHHHHHHHHHc
Confidence 6777888899 9999886632211000000 1235667777777777621 33322 22234556888999999999
Q ss_pred CCCEEeeec
Q 018731 276 DVDILTLGQ 284 (351)
Q Consensus 276 g~d~i~i~~ 284 (351)
|+|.+.+.+
T Consensus 182 G~d~i~~~n 190 (301)
T PRK07259 182 GADGLSLIN 190 (301)
T ss_pred CCCEEEEEc
Confidence 999887643
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=81.44 E-value=41 Score=30.37 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.+......|...|.+= -++|-..-..+++..+-+.++. .+++++. .++++++...+...+.+++-.
T Consensus 22 dpv~aA~~a~~aGAdgITvH--lReDrRHI~d~Dv~~L~~~~~~---~lNlE~a-----~t~em~~ia~~~kP~~vtLVP 91 (234)
T cd00003 22 DPVEAALLAEKAGADGITVH--LREDRRHIQDRDVRLLRELVRT---ELNLEMA-----PTEEMLEIALEVKPHQVTLVP 91 (234)
T ss_pred CHHHHHHHHHHcCCCEEEec--CCCCcCcCCHHHHHHHHHHcCC---CEEeccC-----CCHHHHHHHHHCCCCEEEECC
Confidence 34556666677899988761 1111111112444444433331 4667653 278999999999999999877
Q ss_pred hchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 215 ETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 215 es~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.-.++. ..--+-....+.....++.+++ .||.|+..+ .-+ .+.++..+++|++.|-++
T Consensus 92 Ekr~E~TTegGldv~~~~~~l~~~i~~l~~--~gI~VSLFi----DPd----~~qi~~A~~~GAd~VELh 151 (234)
T cd00003 92 EKREELTTEGGLDVAGQAEKLKPIIERLKD--AGIRVSLFI----DPD----PEQIEAAKEVGADRVELH 151 (234)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHH--CCCEEEEEe----CCC----HHHHHHHHHhCcCEEEEe
Confidence 6644431 1000012356777788899999 999865432 122 345577789999999884
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.42 E-value=34 Score=33.41 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=75.1
Q ss_pred CchhH-HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcE-EEEee--cCCCC--CHHHHHHHHHc
Q 018731 132 DPMEP-ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLT--SDFRG--DLRAVETLVHS 205 (351)
Q Consensus 132 ~~eei-~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~-i~~~~--~~~~~--~~e~l~~L~~a 205 (351)
+++++ ...++...+.|++-+-+- |.+.| ...+..-++.+|+...... .-+++ |-..+ -.+.++.|.+.
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfRiF----DAlND--~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~ 168 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFRIF----DALND--VRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEM 168 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEEec----hhccc--hhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHc
Confidence 45554 567777888999987552 33544 3567788888888732221 11222 22111 14788999999
Q ss_pred CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEe
Q 018731 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 206 G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~ 281 (351)
|+|+|++- +|-- --+.....+.++.+++.. ++. +.+.-..|+ -..+.....+.|+|.+-
T Consensus 169 g~DSIciK-----DmaG-----lltP~~ayelVk~iK~~~-~~pv~lHtH~TsG~------a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 169 GVDSICIK-----DMAG-----LLTPYEAYELVKAIKKEL-PVPVELHTHATSGM------AEMTYLKAVEAGVDGID 229 (472)
T ss_pred CCCEEEee-----cccc-----cCChHHHHHHHHHHHHhc-CCeeEEecccccch------HHHHHHHHHHhCcchhh
Confidence 99999762 3321 235566667777777643 444 444445553 23444555678888653
|
|
| >PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1 | Back alignment and domain information |
|---|
Probab=81.21 E-value=13 Score=34.61 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCC------CcHHHHHHHHHHHHHhCCC-cEEEEe-ecCC---CCC-H---
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQKPD-IMVECL-TSDF---RGD-L--- 196 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~------~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~---~~~-~--- 196 (351)
+..++...+..+.+.|++.|.+..|+++...+ .+..+..++++.+++...+ +.+.+. .|.+ ..+ +
T Consensus 83 n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~ 162 (287)
T PF02219_consen 83 NREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAEL 162 (287)
T ss_dssp BHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHH
Confidence 45778888888889999999888887643311 1233467888888854322 344321 1221 112 2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCC--eEEEeee
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGL--ITKSSIM 255 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi--~v~~~~I 255 (351)
+.++.=.++|.+.+. +.+.++.+...+.++.+++ .|+ .+-.+++
T Consensus 163 ~~l~~Ki~aGA~f~i-------------TQ~~fd~~~~~~~~~~~~~--~g~~~pIi~GI~ 208 (287)
T PF02219_consen 163 KRLKKKIDAGADFII-------------TQPFFDAEAFERFLDRLRE--AGIDVPIIPGIM 208 (287)
T ss_dssp HHHHHHHHTTESEEE-------------EEE-SSHHHHHHHHHHHHH--TTHTSEEEEEEE
T ss_pred HHHHHHHHCCCCEEe-------------ccccCCHHHHHHHHHHHHH--cCCCCcEEEEEe
Confidence 233344567887651 1134566777777778877 776 5555544
|
7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B .... |
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.17 E-value=30 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=47.5
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+++|+. +++.+..+.-|.++|-... ....+.++++.+++...+ .|.+. -++.+.++.+..|+++|+++|
T Consensus 50 ~tp~e~v---~aA~~~dv~vIgvSsl~g~-----h~~l~~~lve~lre~G~~-~i~v~-~GGvip~~d~~~l~~~G~~~i 119 (143)
T COG2185 50 QTPEEAV---RAAVEEDVDVIGVSSLDGG-----HLTLVPGLVEALREAGVE-DILVV-VGGVIPPGDYQELKEMGVDRI 119 (143)
T ss_pred CCHHHHH---HHHHhcCCCEEEEEeccch-----HHHHHHHHHHHHHHhCCc-ceEEe-ecCccCchhHHHHHHhCccee
Confidence 4556554 4446777888888764431 136788899999998654 33322 234457777999999999988
Q ss_pred e
Q 018731 211 A 211 (351)
Q Consensus 211 ~ 211 (351)
.
T Consensus 120 f 120 (143)
T COG2185 120 F 120 (143)
T ss_pred e
Confidence 5
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=81.12 E-value=8.3 Score=35.91 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++.+.|++.|.| |.++ .+.+.+.++.++.. ..+++ .++ .+.+.+..+++.|+|.|+.|.
T Consensus 204 leea~ea~~~gaDiI~L-----Dn~s---~e~l~~av~~~~~~---~~lea--SGG-I~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 204 LDQLEEALELGVDAVLL-----DNMT---PDTLREAVAIVAGR---AITEA--SGR-ITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHhCCC---ceEEE--ECC-CCHHHHHHHHhcCCCEEEeCh
Confidence 45666667889988888 3344 47788888766543 23555 444 499999999999999998764
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.10 E-value=43 Score=30.37 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=95.9
Q ss_pred CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEE-EEeecCC-----CCCHHHHHH
Q 018731 128 PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV-ECLTSDF-----RGDLRAVET 201 (351)
Q Consensus 128 ~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i-~~~~~~~-----~~~~e~l~~ 201 (351)
..+..+..+..-+......|+++|-+.=...... ....+.+..+++.++...++..+ .+.-.+. ....+..+.
T Consensus 61 D~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~ 139 (238)
T PRK02227 61 DVPYKPGTISLAALGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAI 139 (238)
T ss_pred CCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHH
Confidence 3344566676667777788999987721111101 11123344455666665555443 2221221 124588899
Q ss_pred HHHcCCCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CC-CHHHHHHHHHHHHhCCCC
Q 018731 202 LVHSGLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE-SDDDLKEAMADLRSIDVD 278 (351)
Q Consensus 202 L~~aG~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gE-t~e~~~~~l~~l~~lg~d 278 (351)
.+++|++.+-+ +|..+-. .... --+.++.-+.++.+++ .|+ +.|+ |- ..+| +..|+.+++|
T Consensus 140 a~~aGf~g~Ml--DTa~Kdg~~Lfd--~l~~~~L~~Fv~~ar~--~Gl------~~gLAGSL~~~d----ip~L~~l~pD 203 (238)
T PRK02227 140 AADAGFDGAML--DTAIKDGKSLFD--HMDEEELAEFVAEARS--HGL------MSALAGSLKFED----IPALKRLGPD 203 (238)
T ss_pred HHHcCCCEEEE--ecccCCCcchHh--hCCHHHHHHHHHHHHH--ccc------HhHhcccCchhh----HHHHHhcCCC
Confidence 99999998765 4543211 1111 2377888888889998 776 4677 43 3344 4566899999
Q ss_pred EEeeecccCCCCCcccccCCCCHHHHHHHHHHHH
Q 018731 279 ILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (351)
Q Consensus 279 ~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~ 312 (351)
++.|---+ -.... ....++++...++++.+.
T Consensus 204 ~lGfRgav-C~g~d--R~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 204 ILGVRGAV-CGGGD--RTGRIDPELVAELREALR 234 (238)
T ss_pred EEEechhc-cCCCC--cccccCHHHHHHHHHHhh
Confidence 99983222 11111 345688888888877654
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=32 Score=31.17 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 018731 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (351)
Q Consensus 167 ~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~ 243 (351)
..+.+.++.+++..++..+.+ ..+..+.+.++.+.++|.|.+-+|- .+.+.+. ..+.++..+.++.+++
T Consensus 170 ~~~~~~i~~lr~~~~~~~i~v--~gGI~~~e~i~~~~~~gaD~vvvGS----ai~~~~~--~~~~~~~~~~~~~~~~ 238 (244)
T PRK13125 170 VSVERNIKRVRNLVGNKYLVV--GFGLDSPEDARDALSAGADGVVVGT----AFIEELE--KNGVESALNLLKKIRG 238 (244)
T ss_pred HHHHHHHHHHHHhcCCCCEEE--eCCcCCHHHHHHHHHcCCCEEEECH----HHHHHHH--hcCHHHHHHHHHHHHH
Confidence 456677778887654444432 3344488999999999999987762 2222222 1235566666665543
|
|
| >PRK13384 delta-aminolevulinic acid dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=80.96 E-value=17 Score=34.13 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=40.6
Q ss_pred CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCC-C------cHHHHHHHHHHHHHhCCCcEE
Q 018731 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-G------GSGHFARTVKAMKKQKPDIMV 185 (351)
Q Consensus 127 ~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~-~------~~~~~~~li~~ik~~~p~i~i 185 (351)
+..+.+.+.+.++++.+.+.|++.|.|-|.. . ..| . .-.-+.+.++.||+.+|++.|
T Consensus 54 g~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~-~-~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~v 117 (322)
T PRK13384 54 GISRLPESALADEIERLYALGIRYVMPFGIS-H-HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMV 117 (322)
T ss_pred CcceECHHHHHHHHHHHHHcCCCEEEEeCCC-C-CCCCCcccccCCCChHHHHHHHHHHHCCCeEE
Confidence 3445667889999999999999999887752 1 111 0 012467889999999998643
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.94 E-value=43 Score=33.61 Aligned_cols=79 Identities=23% Similarity=0.172 Sum_probs=51.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++...+.++++.+.|+..|.|..-..- +. ...+.++++.+++..+ +.|++- +++.-+.....-.-.++|++.|
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~G~-l~---P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~v 225 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMAGL-LT---PKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMF 225 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccCC-cC---HHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 4677888899999999999999432221 22 3789999999998763 544432 2222123333444568999998
Q ss_pred ecchh
Q 018731 211 AHNIE 215 (351)
Q Consensus 211 ~~~ie 215 (351)
..++.
T Consensus 226 D~sv~ 230 (467)
T PRK14041 226 DTAIS 230 (467)
T ss_pred Eeecc
Confidence 66544
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=18 Score=33.28 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHh-cCcceeccCcc
Q 018731 259 GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGES-IGFRYVASGPL 324 (351)
Q Consensus 259 gEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~-~G~~~~~~~~~ 324 (351)
.+..|+..+.+..+++.|++.+.+- .|| .+++ +++.++.. -||.|+.+.+-
T Consensus 127 DLP~ee~~~~~~~~~~~gi~~I~lv---~Pt---------T~~e---ri~~i~~~a~gFIY~vS~~G 178 (263)
T CHL00200 127 DLPYEESDYLISVCNLYNIELILLI---APT---------SSKS---RIQKIARAAPGCIYLVSTTG 178 (263)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEE---CCC---------CCHH---HHHHHHHhCCCcEEEEcCCC
Confidence 3445566666666667776655541 341 1223 34444443 48999866443
|
|
| >KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.57 E-value=10 Score=37.67 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCC------CCCcHHHHHHHHHHHHHhCCC-cEEEEe-ecCC---------CC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDI------PDGGSGHFARTVKAMKKQKPD-IMVECL-TSDF---------RG 194 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l------~~~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~---------~~ 194 (351)
..+.+...++.+.+.|++.|.-.=|+|+.= ..+++.+-.++++.|++.+-+ +.|.+. -|.+ ..
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~~~ 169 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDYLA 169 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccchhh
Confidence 345666777788889999987665664311 124677889999999998644 223221 1221 22
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEA 268 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~ 268 (351)
|-+.++.=.+||.|-| ..++ -++.+..++.++..++ .|+ +.-++.|+ -++...+...
T Consensus 170 Dl~yLk~KvdaGaDFI------iTQl-------FYd~e~flkfv~~cR~--~gi--~~PIvPGIMPI~~Y~sf~R~ 228 (590)
T KOG0564|consen 170 DLPYLKEKVDAGADFI------ITQL-------FYDVETFLKFVKDCRA--AGI--NVPIVPGIMPIQSYRSFLRI 228 (590)
T ss_pred hhHHHHHhhcccchhh------hhhh-------hcCHHHHHHHHHHHHH--hCC--CCCcccccccchhHHHHHHH
Confidence 3455555556777654 1121 2466667777777777 676 45555665 4555544443
|
|
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=80.52 E-value=6.5 Score=35.53 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhCCCcEEEEecc--------CCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSV--------DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg--------~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
+|+.+.+..+ ....++|.-- .+-++. ...+.+.++++.+++. ++.+..+... +.+.++.-++.
T Consensus 74 ~e~~~ia~~~---kP~~vtLVPE~r~e~TTegGldv~-~~~~~l~~~i~~L~~~--gIrvSLFiDP---~~~qi~~A~~~ 144 (239)
T PF03740_consen 74 EEMVDIALKV---KPDQVTLVPEKREELTTEGGLDVA-GNRDRLKPVIKRLKDA--GIRVSLFIDP---DPEQIEAAKEL 144 (239)
T ss_dssp HHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-TC-GGHHHHHHHHHHHHHT--T-EEEEEE-S----HHHHHHHHHT
T ss_pred HHHHHHHHhC---CcCEEEECCCCCCCcCCCcCChhh-cCHHHHHHHHHHHHhC--CCEEEEEeCC---CHHHHHHHHHc
Confidence 5566665544 4566766321 111122 2357899999999986 7887765421 67999999999
Q ss_pred CCCeeecchhchHHHH-hhhcCCCCC-HHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 206 GLDVFAHNIETVKRLQ-RIVRDPRAG-YEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 206 G~~~i~~~ies~~~~~-~~~r~~~~~-~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.++|-+.-..+-..+ ..-+ .... +++..++.+.+++ .|+.|++ |+|=+.+.+... ++--++..++++
T Consensus 145 Gad~VELhTG~yA~a~~~~~~-~~~ell~~l~~aa~~a~~--lGL~VnA----GHgL~y~N~~~i---~~i~~i~EvnIG 214 (239)
T PF03740_consen 145 GADRVELHTGPYANAFDDAEE-AEEELLERLRDAARYAHE--LGLGVNA----GHGLNYDNVRPI---AAIPPIEEVNIG 214 (239)
T ss_dssp T-SEEEEETHHHHHHSSHHHH-HHHHHHHHHHHHHHHHHH--TT-EEEE----ETT--TTTHHHH---HTSTTEEEEEE-
T ss_pred CCCEEEEehhHhhhhcCCHHH-HHHHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHHHHHH---HhCCCceEEecC
Confidence 9999976543332221 0000 0112 4777888888888 9998775 455444443322 223346667776
Q ss_pred ccc
Q 018731 284 QYL 286 (351)
Q Consensus 284 ~~l 286 (351)
..+
T Consensus 215 Hai 217 (239)
T PF03740_consen 215 HAI 217 (239)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=80.36 E-value=17 Score=33.98 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.++.++.++.+.+.|.+-|++-++.. + .+.+.++.+.+...+|++.+-+....+ ....++.|.++|+++++.
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~~~~----~--~~ei~~~~~~~~~~~p~~pl~~~~~~~--~~~~~~eL~~lG~~~v~~ 239 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHSRKK----D--PDEILEFARRFRNHYPRTPLVIVPTSY--YTTPTDEFRDAGISVVIY 239 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCC----C--HHHHHHHHHHhhhhCCCCCEEEecCCC--CCCCHHHHHHcCCCEEEE
Confidence 45666777788888998888864322 1 367888888887766665553321111 112478899999999987
Q ss_pred chhc
Q 018731 213 NIET 216 (351)
Q Consensus 213 ~ies 216 (351)
+...
T Consensus 240 ~~~~ 243 (285)
T TIGR02320 240 ANHL 243 (285)
T ss_pred hHHH
Confidence 6444
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=80.32 E-value=15 Score=34.10 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=51.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|+..|.|..-..-.. ...+.++++.+++..+ +.+.+- +++.-+-..-.-...++|++.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~ 220 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKDMAGLLT----PYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDI 220 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC----HHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 4578888899999999999999943222212 3789999999998764 444431 333322233333345789999
Q ss_pred eecch
Q 018731 210 FAHNI 214 (351)
Q Consensus 210 i~~~i 214 (351)
|..++
T Consensus 221 vd~sv 225 (275)
T cd07937 221 VDTAI 225 (275)
T ss_pred EEEec
Confidence 86544
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=80.29 E-value=29 Score=32.97 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=87.2
Q ss_pred HHHHHHHhCCCcEEEEeccCC-------CCC--CCCcHHHHH-HHHHHHHHhCCCcEEEEeecCCCCCH-HHHHHHHHcC
Q 018731 138 NTAKAIASWGVDYIVLTSVDR-------DDI--PDGGSGHFA-RTVKAMKKQKPDIMVECLTSDFRGDL-RAVETLVHSG 206 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~-------~~l--~~~~~~~~~-~li~~ik~~~p~i~i~~~~~~~~~~~-e~l~~L~~aG 206 (351)
+.++.+.+.|++.+.||-... ..- .+.++..+. ++++++-+. ++-|.+... ++ -..+.+.-+.
T Consensus 121 ~~l~~~y~lGvR~~~Lt~n~~N~~a~g~~~~~~~~~GLT~~G~~vV~~mn~l--Gm~vDvSH~----s~~t~~Dv~~~s~ 194 (320)
T PF01244_consen 121 ERLDEFYDLGVRYIGLTWNYRNELADGCGEPGNRDGGLTPFGREVVREMNRL--GMLVDVSHL----SEKTFWDVLEISK 194 (320)
T ss_dssp HHHHHHHHTTEEEEES-SSSBBSSBBBTTSTTTTSSSB-HHHHHHHHHHHHH--T-EEE-TTB-----HHHHHHHHHH-S
T ss_pred HHHHHHHHcCCEEEEEeecCCCccccccccccccCCCcChHHHHHHHHHHHc--CCeeeeccC----CHHHHHHHHhhcC
Confidence 566777889999998873211 111 234555665 677777776 677776432 33 3344444433
Q ss_pred CC-eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CC------CHHHHHHHHHHHHh-CCC
Q 018731 207 LD-VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE------SDDDLKEAMADLRS-IDV 277 (351)
Q Consensus 207 ~~-~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gE------t~e~~~~~l~~l~~-lg~ 277 (351)
.- .++|+ ....+.. .|+.-.++.+++| .+ .|=-+..++.-.+ ++ |.+++.++++++.+ .|+
T Consensus 195 ~PviaSHS--n~ral~~---h~RNltDe~irai---a~--~GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~ 264 (320)
T PF01244_consen 195 KPVIASHS--NARALCP---HPRNLTDEQIRAI---AE--RGGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGI 264 (320)
T ss_dssp SEEEECCE--EBTTTS-----TTSB-HHHHHHH---HH--TT-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-G
T ss_pred CCEEEecc--ChHhhCC---CCCCCCHHHHHHH---HH--CCcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCC
Confidence 22 22332 1222221 1334455556554 34 5555777777666 44 79999999999877 589
Q ss_pred CEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 278 DILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 278 d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
|+|.++.=+--... .....-++.++..+.+.+.+.||..
T Consensus 265 dhVgiGsDfdg~~~--~~~gl~~~~~~~~l~~~L~~rG~s~ 303 (320)
T PF01244_consen 265 DHVGIGSDFDGIDG--PPEGLEDPSDLPNLTEELLKRGYSE 303 (320)
T ss_dssp GGEEEE--BTTTSS--HBBTBSSGGGHHHHHHHHHHTTS-H
T ss_pred CeEEECcccCCCCC--CCCccCCHHHHHHHHHHHHHCCCCH
Confidence 99999732200000 0123334667888888888788854
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A .... |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=80.16 E-value=31 Score=32.20 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHHcC--CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVHSG--LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~aG--~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
+.++.+.+++ ++.|-+|+-+.....+... -..+.+...+.++.+++. .++.+..- +..+.++..+.++.+.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~-l~~~~~~~~eiv~~vr~~-~~~pv~vK----i~~~~~~~~~~a~~l~~ 180 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGIA-IGQDPELSADVVKAVKDK-TDVPVFAK----LSPNVTDITEIAKAAEE 180 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCccc-cccCHHHHHHHHHHHHHh-cCCCEEEE----CCCChhhHHHHHHHHHH
Confidence 5567777764 8888887654322100000 124677777888888762 14433222 23456788889999999
Q ss_pred CCCCEEeee
Q 018731 275 IDVDILTLG 283 (351)
Q Consensus 275 lg~d~i~i~ 283 (351)
.|+|.+.+.
T Consensus 181 ~G~d~i~v~ 189 (300)
T TIGR01037 181 AGADGLTLI 189 (300)
T ss_pred cCCCEEEEE
Confidence 999999874
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=80.14 E-value=9.9 Score=34.03 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHH-HHHcCCCeee
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET-LVHSGLDVFA 211 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~-L~~aG~~~i~ 211 (351)
..+..+.++.+.+.|+..+.+++.+..... .+ ...++++.+++.. ++.+-+ .++..+.+.+.. +++.|++.+.
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~-~g--~~~~~~~~i~~~~-~ipvia--~GGi~s~~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGTM-KG--YDLELIKTVSDAV-SIPVIA--LGGAGSLDDLVEVALEAGASAVA 225 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCCc-CC--CCHHHHHHHHhhC-CCCEEE--ECCCCCHHHHHHHHHHcCCCEEE
Confidence 344567788888999999999985542111 11 2367777787753 445433 455557777777 9999999987
Q ss_pred cc
Q 018731 212 HN 213 (351)
Q Consensus 212 ~~ 213 (351)
++
T Consensus 226 vg 227 (232)
T TIGR03572 226 AA 227 (232)
T ss_pred Ee
Confidence 65
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=80.05 E-value=12 Score=34.65 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.+....|++.|.|.. +. .+.+.++++.+++. +.+.+++ .++ .+.+.+..++++|+|.|.++
T Consensus 192 eea~~A~~~gaD~I~ld~-----~~---~e~l~~~v~~i~~~-~~i~i~a--sGG-It~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 192 EEAEEALEAGADIIMLDN-----MS---PEELKEAVKLLKGL-PRVLLEA--SGG-ITLENIRAYAETGVDVISTG 255 (269)
T ss_pred HHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhccC-CCeEEEE--ECC-CCHHHHHHHHHcCCCEEEEc
Confidence 344445567888888721 32 36777777777765 5666655 445 48999999999999999865
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 13/211 (6%)
Query: 98 GDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPE---NTAKAIASWGVDYIVLT 154
GD + I+ + C + C +C ++ M PE A+ +G IVL
Sbjct: 48 GDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQ 107
Query: 155 SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214
S + + +K M + L+ E +G D +
Sbjct: 108 SGEDPYXMPDVISDIVKEIKKMG------VAVTLSLGEW-PREYYEKWKEAGADRYLLRH 160
Query: 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLR 273
ET + P +E L L K + G T + M+GL G++ DDL + + L+
Sbjct: 161 ETANPVLHRKLRPDTSFENRLNCLLTLK--ELGYETGAGSMVGLPGQTIDDLVDDLLFLK 218
Query: 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKF 304
D D++ +G ++ L ++
Sbjct: 219 EHDFDMVGIGPFIPHPDTPLANEKKGDFTLT 249
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Length = 350 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 22/190 (11%)
Query: 98 GDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPE---NTAKAIASWGVDYIVLT 154
G+ + + C C FC RN + E T K + G + LT
Sbjct: 56 GNRVFLNCFIYFSTYCKNQCSFCYYN-CRNEINRYRLTMEEIKETCKTLKGAGFHMVDLT 114
Query: 155 S----VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210
+D F V+ +K+ + + + ++ + G +
Sbjct: 115 MGEDPYYYEDPN-----RFVELVQIVKE-ELGLPI-MISPGLMDNATL-LKAREKGANFL 166
Query: 211 AHNIETVKRL--QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEA 268
A ET +++ ++ + + AK ++G + I+ G+G + +
Sbjct: 167 ALYQETYDTELYRKLR--VGQSFDGRVNARRFAK--QQGYCVEDGILTGVGNDIESTILS 222
Query: 269 MADLRSIDVD 278
+ + + D D
Sbjct: 223 LRGMSTNDPD 232
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-07
Identities = 46/333 (13%), Positives = 96/333 (28%), Gaps = 104/333 (31%)
Query: 15 YS-IPSKIRCESRTDTVKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESL 73
Y + S I+ E R ++ + Q+ L+ K + Q + +++++L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQAL 144
Query: 74 SSLKLNT------------------VC--EEAQCPNIGEC-W-NGGGDGIATATIMLLGD 111
L+ VC + QC + W N + +L
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 112 TCTR-GCRFCAVKTSRNPAPPDPMEPENTAKA--IASWGVDY----IVLTSVDRDDIPDG 164
+ + + ++ + + + S Y +VL ++ +
Sbjct: 205 LLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLLVL-----LNVQN- 255
Query: 165 GSGHFARTVKAMKKQKPDIMVEC---LTS------DF-RGDLRAVETLVHS--------G 206
A+ A ++ C LT+ DF +L H
Sbjct: 256 -----AKAWNAF-----NL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 207 LDVFAHNIET-VKRLQR---------------IVRDPRAGYEQSLEVLKHAKLSKKGLIT 250
+ ++ + L R +RD A ++ KH K I
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLTTII 359
Query: 251 KSSI-MLGLGESDDDLKEAMADLRSI---DVDI 279
+SS+ +L + ++ L S+ I
Sbjct: 360 ESSLNVL----EPAEYRKMFDRL-SVFPPSAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 44/336 (13%), Positives = 86/336 (25%), Gaps = 112/336 (33%)
Query: 22 RCESRTDTVKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTV 81
C S ++M L DP+ R ++ L L
Sbjct: 191 NCNSPETVLEM------LQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRL----- 237
Query: 82 CEEAQCPNIGECWNGGGDGIATATIMLLGDTCTR--------GCRFCAVKTSRNPA---- 129
+ N +++L + C+ + T+R
Sbjct: 238 LKSKPYEN---------------CLLVLLNVQNAKAWNAFNLSCK--ILLTTRFKQVTDF 280
Query: 130 -------------PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DGGSGH------F 169
+ P+ + + D+P + + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKY-------LDCRPQDLPREVLTTNPRRLSII 333
Query: 170 ARTVKAMK-----------KQKPDIM---VECLTSDFRGDLRAV-ETLVHSGLDVFAHNI 214
A +++ + I+ + L + R + + L VF +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---EYRKMFDRLS-----VFPPSA 385
Query: 215 E-TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273
L I D + V+ KL K L+ K KE+ +
Sbjct: 386 HIPTILLSLIWFDVI--KSDVMVVVN--KLHKYSLVEK------------QPKESTISIP 429
Query: 274 SIDVDILTLGQYLQPTPLHLT-VKEYVTPEKFDFWK 308
SI +++ + LH + V Y P+ FD
Sbjct: 430 SIYLELKV--KLENEYALHRSIVDHYNIPKTFDSDD 463
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 99.96 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 99.95 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 99.94 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.92 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.89 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.78 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.78 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.69 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.61 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.55 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.51 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 99.16 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 98.28 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 97.9 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 97.67 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 97.66 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 97.43 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 97.13 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 97.09 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 96.99 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 96.97 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 96.92 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 96.79 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 96.51 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 96.34 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 96.16 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 94.41 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.33 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 94.13 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 93.78 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 93.72 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 92.74 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 92.59 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 92.42 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 92.3 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 92.28 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 92.05 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 91.89 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 91.77 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 91.72 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 91.5 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 90.81 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 90.76 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 90.76 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 90.72 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 90.62 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 90.35 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 90.05 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 89.97 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 89.61 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 89.55 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 89.45 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 89.19 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 89.04 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 88.92 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 88.55 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 88.42 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 88.37 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 88.25 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 88.25 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 88.2 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 87.96 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 87.82 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.57 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 87.56 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 87.48 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 87.37 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.3 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 87.09 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 87.08 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 86.97 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 86.73 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 86.69 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 86.65 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 86.52 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 86.21 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 86.16 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 86.14 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 86.11 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 85.96 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 85.94 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 85.81 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 85.78 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 85.74 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 85.72 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 85.64 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 85.51 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 85.44 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 85.29 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 85.09 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 85.07 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 84.79 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 84.68 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 84.59 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 84.56 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 84.43 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 84.05 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 83.98 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 83.87 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 83.86 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 83.85 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 83.31 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 83.25 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 83.18 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 83.08 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 83.03 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 82.94 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 82.3 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 82.3 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 82.28 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 82.12 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 82.03 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 81.97 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 81.69 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 81.68 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 81.59 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 81.55 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 81.27 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 81.19 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 81.07 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 80.54 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 80.51 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 80.5 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 80.42 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 80.42 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 80.35 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 80.29 |
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=239.10 Aligned_cols=245 Identities=17% Similarity=0.224 Sum_probs=196.8
Q ss_pred HhhhccCCcch--HHHHHHhcC---CCHHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCC--C
Q 018731 56 LRQKAPQGQRF--QEVKESLSS---LKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRN--P 128 (351)
Q Consensus 56 i~~~~~~g~~~--~~~~~ll~~---~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~--~ 128 (351)
|.+++.+|+++ .|+..+++. .+++.|++.|+ .+++.+.| +.+...+++++|++|+++|.||+++..+. .
T Consensus 13 i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~~i~~t~~C~~~C~fC~~~~~~~~~~ 88 (350)
T 3t7v_A 13 LGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAAR--KVRDHYFG--NRVFLNCFIYFSTYCKNQCSFCYYNCRNEINR 88 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHH--HHHHHHHT--TEEEEEEEEEEECCCCCCCTTCTTCTTSCCCC
T ss_pred HHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHH--HHHHHHCC--CEEEEEEeeecCCCcCCCCCcCCCcCcCCCCc
Confidence 45677777766 568888875 35788999999 99998887 46777788899999999999999976542 2
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..++++++.+.++.+.+.|+++|+|+||+.+.+. .+.+++.++++.+++.+ ++.+++ +++ .++++.++.|+++|++
T Consensus 89 ~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~-~~~~~~~~l~~~ik~~~-~i~i~~-s~g-~~~~e~l~~L~~aG~~ 164 (350)
T 3t7v_A 89 YRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYY-EDPNRFVELVQIVKEEL-GLPIMI-SPG-LMDNATLLKAREKGAN 164 (350)
T ss_dssp CBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHH-HSTHHHHHHHHHHHHHH-CSCEEE-ECS-SCCHHHHHHHHHTTEE
T ss_pred eeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccc-cCHHHHHHHHHHHHhhc-CceEEE-eCC-CCCHHHHHHHHHcCCC
Confidence 2367899999999988999999999999843221 01478899999999765 466654 343 4699999999999999
Q ss_pred eeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc-
Q 018731 209 VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL- 286 (351)
Q Consensus 209 ~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l- 286 (351)
++.+++||+++ .++.++ +++++++++++++.+++ .|+.+++++|+|+|||.+++.++++++++++++.+.++.|.
T Consensus 165 ~i~i~lEt~~~~~~~~i~-~~~~~~~~l~~i~~a~~--~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p 241 (350)
T 3t7v_A 165 FLALYQETYDTELYRKLR-VGQSFDGRVNARRFAKQ--QGYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLP 241 (350)
T ss_dssp EEECCCBCSCHHHHHHHS-TTCCHHHHHHHHHHHHH--HTCEEEEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCC
T ss_pred EEEEeeecCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCeEccceEeecCCCHHHHHHHHHHHHhCCCCEEEecceee
Confidence 99999999855 677776 57899999999999999 99999999999999999999999999999999999997564
Q ss_pred CC-CCCcccccCCCCHHHHHHHHHHHHh
Q 018731 287 QP-TPLHLTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 287 ~P-Tp~~~~~~~~v~~~e~~~~~~~~~~ 313 (351)
.| ||++. ....+++++.++.+.++.
T Consensus 242 ~~gT~l~~--~~~~~~~e~l~~ia~~Rl 267 (350)
T 3t7v_A 242 QEGTPLEG--FRDKSNLSELKIISVLRL 267 (350)
T ss_dssp CTTSTTTT--CCCCCCCCHHHHHHHHHH
T ss_pred CCCCcCcc--CCCCChHHHHHHHHHHHH
Confidence 23 88762 344566666666555554
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=220.28 Aligned_cols=233 Identities=24% Similarity=0.321 Sum_probs=191.7
Q ss_pred chHHHHHHhcCCC---HHHHHHHccCCCccccccCCCCceeeEEEEeeccCCCCCCcCcccCCCCCC---CCCCchhHHH
Q 018731 65 RFQEVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPEN 138 (351)
Q Consensus 65 ~~~~~~~ll~~~~---l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~s~gC~~~C~FC~~~~~~~~---~~~~~eei~~ 138 (351)
...|+..+++..+ ++.|+..|+ .+++.+.| +.+...+++.+|++|+++|.||++....+. ..++++++.+
T Consensus 16 ~~~e~~~ll~~~~~~~~~~l~~~A~--~ir~~~~g--~~v~~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~ 91 (348)
T 3iix_A 16 TREVLKEALSINDRGFNEALFKLAD--EIRRKYVG--DEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVE 91 (348)
T ss_dssp CHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHC--SEEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHH--HHHHHHcC--CEEEEEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHH
Confidence 3467888887654 677899999 89888887 466677788899999999999998775432 2357799999
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchH
Q 018731 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (351)
Q Consensus 139 ~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~ 218 (351)
.++.+.+.|++.|+|+||+++.+. .+++.++++.+++. ++.+.+ ++ +.++++.++.|+++|++++.+++|+.+
T Consensus 92 ~i~~~~~~g~~~i~~~gGe~p~~~---~~~~~~li~~i~~~--~~~i~~-s~-g~l~~e~l~~L~~ag~~~v~i~let~~ 164 (348)
T 3iix_A 92 RARLAVQFGAKTIVLQSGEDPYXM---PDVISDIVKEIKKM--GVAVTL-SL-GEWPREYYEKWKEAGADRYLLRHETAN 164 (348)
T ss_dssp HHHHHHHTTCSEEEEEESCCGGGT---THHHHHHHHHHHTT--SCEEEE-EC-CCCCHHHHHHHHHHTCCEEECCCBCSC
T ss_pred HHHHHHHCCCCEEEEEeCCCCCcc---HHHHHHHHHHHHhc--CceEEE-ec-CCCCHHHHHHHHHhCCCEEeeeeeeCC
Confidence 999998999999999999954444 47899999999986 677764 33 346999999999999999999999985
Q ss_pred H-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCccc
Q 018731 219 R-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLT 294 (351)
Q Consensus 219 ~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~ 294 (351)
+ .++.++ +.+++++++++++.+++ .|+.+.+++|+|+ |||.+++.++++++++++++.+.+++|. .| ||++.
T Consensus 165 ~~~~~~i~-~~~~~~~~~~~i~~~~~--~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~- 240 (348)
T 3iix_A 165 PVLHRKLR-PDTSFENRLNCLLTLKE--LGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLAN- 240 (348)
T ss_dssp HHHHHHHS-TTSCHHHHHHHHHHHHH--TTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTT-
T ss_pred HHHHHHhC-CCcCHHHHHHHHHHHHH--hCCeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCccc-
Confidence 4 677776 56799999999999999 9999999999999 9999999999999999999999997554 22 77762
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 018731 295 VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 295 ~~~~v~~~e~~~~~~~~~~ 313 (351)
....+++++.++.+.++.
T Consensus 241 -~~~~~~~e~~~~~a~~R~ 258 (348)
T 3iix_A 241 -EKKGDFTLTLKMVALTRI 258 (348)
T ss_dssp -SCCCCHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHH
Confidence 355677888877766654
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=213.65 Aligned_cols=229 Identities=17% Similarity=0.226 Sum_probs=181.6
Q ss_pred HHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEee-ccCCCCCCcCcccCCCC--C---CCCCCchhHHHHHH
Q 018731 68 EVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR--N---PAPPDPMEPENTAK 141 (351)
Q Consensus 68 ~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~~-s~gC~~~C~FC~~~~~~--~---~~~~~~eei~~~~~ 141 (351)
++..+++ .++..|+..|+ .+++..+++ +.+....++.+ +++|+++|.||.++... + ...++++++.+.++
T Consensus 34 e~~~l~~-~~~~~L~~~A~--~~~~~~~~~-~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~ 109 (369)
T 1r30_A 34 QVTELFE-KPLLDLLFEAQ--QVHRQHFDP-RQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 109 (369)
T ss_dssp TTHHHHH-SCHHHHHHHHH--HHHHHHSCT-TCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHH
T ss_pred HHHHHHh-ccHHHHHHHHH--HHHHHhcCC-CEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHH
Confidence 3455555 46778888888 887776643 45666777875 99999999999998632 1 12256789999998
Q ss_pred HHHhCCCcEEEEeccC--CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH
Q 018731 142 AIASWGVDYIVLTSVD--RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR 219 (351)
Q Consensus 142 ~~~~~G~~~I~ltgg~--~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~ 219 (351)
.+.+.|++.|+|+||. +..+ ..+++.++++.+++. ++.+.+ +++. ++++.++.|+++|++++++++||.++
T Consensus 110 ~~~~~g~~~i~~~gg~~~p~~~---~~~~l~~ll~~ik~~--g~~i~~-t~G~-l~~e~l~~L~~aGvd~v~i~les~~e 182 (369)
T 1r30_A 110 KAKAAGSTRFCMGAAWKNPHER---DMPYLEQMVQGVKAM--GLEACM-TLGT-LSESQAQRLANAGLDYYNHNLDTSPE 182 (369)
T ss_dssp HHHHTTCSEEEEEECCSSCCTT---THHHHHHHHHHHHHT--TSEEEE-ECSS-CCHHHHHHHHHHCCCEEECCCBSCHH
T ss_pred HHHHcCCcEEEEEeCCCCCCcC---CHHHHHHHHHHHHHc--CCeEEE-ecCC-CCHHHHHHHHHCCCCEEeecCcCCHH
Confidence 8888999999998864 4322 368999999999986 455543 5554 59999999999999999999999545
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC--CCEEeeecccCC---CCCccc
Q 018731 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID--VDILTLGQYLQP---TPLHLT 294 (351)
Q Consensus 220 ~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg--~d~i~i~~~l~P---Tp~~~~ 294 (351)
.++.++ +++++++++++++.+++ .|+.+++++|+|+|||.+++.++++++++++ ++.++++.+ .| ||++.
T Consensus 183 ~~~~i~-~~~~~~~~l~~i~~a~~--~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l-~p~~gT~l~~- 257 (369)
T 1r30_A 183 FYGNII-TTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINML-VKVKGTPLAD- 257 (369)
T ss_dssp HHHHHC-CSSCHHHHHHHHHHHHH--HHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEEC-CCCTTSTTSS-
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHH--cCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeee-eecCCCcCCC-
Confidence 676666 46899999999999999 8999999999999999999999999999998 889999644 45 77752
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 018731 295 VKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 295 ~~~~v~~~e~~~~~~~~~~ 313 (351)
...++++++.++.+.++.
T Consensus 258 -~~~~~~~~~~~~~~~~r~ 275 (369)
T 1r30_A 258 -NDDVDAFDFIRTIAVARI 275 (369)
T ss_dssp -CCCCCHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHH
Confidence 356788888887776655
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=196.99 Aligned_cols=198 Identities=16% Similarity=0.255 Sum_probs=139.9
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCC-CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCC--cHHHHHHHHHHHHHh
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~-~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~--~~~~~~~li~~ik~~ 179 (351)
..+++.+++||+++|+||.++..++. ..++++++.++++.+.+.|+++|+|+|++...+... +.+.+.++++.+++.
T Consensus 4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~ 83 (304)
T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSL 83 (304)
T ss_dssp SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTS
T ss_pred EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhc
Confidence 67889999999999999999886543 335678999999999889999999998764322100 014688999999875
Q ss_pred CCCc-EEEEe-ecCCCCCHHHHHHHHHcC--CCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 180 KPDI-MVECL-TSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 180 ~p~i-~i~~~-~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
+++ ++... ++...++++.++.|+++| ++++.+++||+++ ..+.++ ++++.++++++++.+++.++|+.+.+++
T Consensus 84 -~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~-r~~t~e~~~~~i~~l~~~~~gi~i~~~~ 161 (304)
T 2qgq_A 84 -NGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMG-RTKSSEELKKMLSSIRERFPDAVLRTSI 161 (304)
T ss_dssp -SSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTT-CCSCHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -CCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 454 45432 222235899999999999 9999999999765 566665 5789999999999999877899999999
Q ss_pred eeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccccCCCCHHH
Q 018731 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPEK 303 (351)
Q Consensus 255 IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~~~~v~~~e 303 (351)
|+|+ |||.+++.++++++++++++.+.++.|. .| ||++.. ...++++.
T Consensus 162 IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~-~~~v~~~~ 212 (304)
T 2qgq_A 162 IVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNL-KEKVDPEM 212 (304)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC------------CCCHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhC-cCCCCHHH
Confidence 9999 9999999999999999999999997665 44 887632 23566543
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=196.64 Aligned_cols=218 Identities=15% Similarity=0.245 Sum_probs=161.2
Q ss_pred EEEEeeccCCCCCCcCcccCCCCCCC----CCCchhHHHHHHHHHhC----CCcEEEEeccCCCCCCCCcHHHHHHHHHH
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRNPA----PPDPMEPENTAKAIASW----GVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~~~----~~~~eei~~~~~~~~~~----G~~~I~ltgg~~~~l~~~~~~~~~~li~~ 175 (351)
..++.+ ++|+.+|.||.++...... ..+.+.+.++++.+.+. ++..|+|+||+|..++ .+++.++++.
T Consensus 54 ~lYihI-pfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~---~~~l~~ll~~ 129 (457)
T 1olt_A 54 SLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLMKL 129 (457)
T ss_dssp EEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHHHH
T ss_pred EEEEEc-CCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCC---HHHHHHHHHH
Confidence 334444 4799999999997642111 12345566666655432 4678999999976454 5789999999
Q ss_pred HHHhCC---CcEEEEee-cCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 018731 176 MKKQKP---DIMVECLT-SDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (351)
Q Consensus 176 ik~~~p---~i~i~~~~-~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (351)
+++.++ +..+.+.+ |+. ++++.++.|+++|+++|++|+||+++ ..+.++ +++++++++++++.+++ .|+.
T Consensus 130 i~~~~~~~~~~eitie~~p~~-l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~-R~~~~~~~~~ai~~~r~--~G~~~ 205 (457)
T 1olt_A 130 LRENFQFNADAEISIEVDPRE-IELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHARE--IGFTS 205 (457)
T ss_dssp HHHHSCEEEEEEEEEEECSSS-CCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHH--TTCCS
T ss_pred HHHhCCCCCCcEEEEEEccCc-CCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCc
Confidence 998643 22333333 444 58999999999999999999999865 555565 58999999999999999 9998
Q ss_pred EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcccc---cCCCCHHH----HHHHHHHHHhcCccee
Q 018731 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV---KEYVTPEK----FDFWKAYGESIGFRYV 319 (351)
Q Consensus 250 v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~~~---~~~v~~~e----~~~~~~~~~~~G~~~~ 319 (351)
+++++|+|+ |||.+++.++++++.+++++++.++++. .| |+..... ....++++ +....+.+...||.++
T Consensus 206 v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~y 285 (457)
T 1olt_A 206 TNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFI 285 (457)
T ss_dssp CEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999999 9999999999999999999999997665 34 4433211 12234433 3345566777899999
Q ss_pred ccCccccccc
Q 018731 320 ASGPLVRSSY 329 (351)
Q Consensus 320 ~~~~~~r~~~ 329 (351)
+.++|++.+.
T Consensus 286 eis~fa~~~~ 295 (457)
T 1olt_A 286 GMDHFARPDD 295 (457)
T ss_dssp ETTEEECTTS
T ss_pred EechhcCCCc
Confidence 9999888654
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=153.65 Aligned_cols=201 Identities=13% Similarity=0.132 Sum_probs=146.1
Q ss_pred EEeeccCCCCCCcCcccCCCCC---CCCCCchhHHHHHHHHHhC---CCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 106 IMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 106 ~i~~s~gC~~~C~FC~~~~~~~---~~~~~~eei~~~~~~~~~~---G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
++.+|++||.+|.||..+.... ...++++++.+.++.+... ++..|.|+||+|. +. .+.+.++++.+++.
T Consensus 22 ~~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~-l~---~~~l~~l~~~~~~~ 97 (245)
T 3c8f_A 22 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAI-LQ---AEFVRDWFRACKKE 97 (245)
T ss_dssp EEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGG-GG---HHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcC-CC---HHHHHHHHHHHHHc
Confidence 3456889999999999875321 1225667777777665443 4789999999973 32 34578999999986
Q ss_pred CCCcEEEEeecCCCC-CHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee--
Q 018731 180 KPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM-- 255 (351)
Q Consensus 180 ~p~i~i~~~~~~~~~-~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I-- 255 (351)
++.+.+.|++... +.+.++.|+++ ++.+.+++++.++ .++.++ +.++++++++++.+++ .|+.+...++
T Consensus 98 --~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~--~~~~~~~~~~i~~l~~--~g~~v~i~~~~~ 170 (245)
T 3c8f_A 98 --GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLV--GVSNHRTLEFAKYLAN--KNVKVWIRYVVV 170 (245)
T ss_dssp --TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHH--SSCSHHHHHHHHHHHH--HTCCEEEEEEEC
T ss_pred --CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhcc--CCCHHHHHHHHHHHHh--cCCEEEEEEeec
Confidence 5666666665432 67788889888 9999999999754 676676 3456999999999999 7887665544
Q ss_pred eeCCCCHHHHHHHHHHHHhCCC-CEEeeecccCCCCCc----------ccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 256 LGLGESDDDLKEAMADLRSIDV-DILTLGQYLQPTPLH----------LTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~-d~i~i~~~l~PTp~~----------~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
.|++++.+++.++++++.++++ +.+.+.++. |++.. .......+.+++.++.+.+++.||..
T Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 243 (245)
T 3c8f_A 171 PGWSDDDDSAHRLGEFTRDMGNVEKIELLPYH-ELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKV 243 (245)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCEEEEEEEECC-CCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCB
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCceeEEEecc-ccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCee
Confidence 4456888999999999999996 667775443 42211 11124567788999999999999864
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=158.31 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=143.5
Q ss_pred eEEEEeeccCCCCCCcCcccCC----CC----CCCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKT----SR----NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~----~~----~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
....+.+|++||.+|.||.... .. ....++.+++.+.++.+.+.|++.|.|+||+|. +. ..+.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPl-l~----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPL-MR----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGG-GS----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc-ch----hhHHHHHH
Confidence 3455678999999999998765 11 112367789999999988999999999999973 32 25778888
Q ss_pred HHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCC-CHHHHHHHHHHHHHhCCCCeEEE
Q 018731 175 AMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRA-GYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 175 ~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~-~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
.+++...-..+.+.|++.. ..+.++.|+++|++.|.+++++.++ .++.++ +.. ++++++++++.+++ .|+.+..
T Consensus 89 ~~~~~~~~~~i~i~TNG~l-l~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~~v~~~i~~l~~--~g~~v~i 164 (340)
T 1tv8_A 89 KLNQIDGIEDIGLTTNGLL-LKKHGQKLYDAGLRRINVSLDAIDDTLFQSIN-NRNIKATTILEQIDYATS--IGLNVKV 164 (340)
T ss_dssp HHTTCTTCCEEEEEECSTT-HHHHHHHHHHHTCCEEEEECCCSSHHHHHHHH-SSCCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHhCCCCCeEEEEeCccc-hHHHHHHHHHCCCCEEEEecCCCCHHHHHHhh-CCCCCHHHHHHHHHHHHH--CCCCEEE
Confidence 8887632125666666554 3568999999999999999999865 566565 345 89999999999999 9999888
Q ss_pred eeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCc--ccccCCCCHHHHHH
Q 018731 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH--LTVKEYVTPEKFDF 306 (351)
Q Consensus 253 ~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~--~~~~~~v~~~e~~~ 306 (351)
.+++.-|++.+++.+++++++++|++ +.+..+ .|.+.. +.....++.+++.+
T Consensus 165 ~~vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~~-~p~~~~~~~~~~~~~~~~e~~~ 218 (340)
T 1tv8_A 165 NVVIQKGINDDQIIPMLEYFKDKHIE-IRFIEF-MDVGNDNGWDFSKVVTKDEMLT 218 (340)
T ss_dssp EEEECTTTTGGGHHHHHHHHHHTTCC-EEEEEC-CCBCSSSSBCCSSCCCHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEEe-eEcCCCccchhhcCCCHHHHHH
Confidence 88874488999999999999999998 444334 462221 11234566665543
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=144.22 Aligned_cols=194 Identities=13% Similarity=0.085 Sum_probs=139.4
Q ss_pred ec-cCCCCCCcCcccCCCC------CCCCCCchhHHHHHHHHHh------C--------------CCcEEEEe-ccCCCC
Q 018731 109 LG-DTCTRGCRFCAVKTSR------NPAPPDPMEPENTAKAIAS------W--------------GVDYIVLT-SVDRDD 160 (351)
Q Consensus 109 ~s-~gC~~~C~FC~~~~~~------~~~~~~~eei~~~~~~~~~------~--------------G~~~I~lt-gg~~~~ 160 (351)
.+ +||+.+|.||..+... .....+++++.+.+..... . .++.|+|+ ||+|.
T Consensus 76 ~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPl- 154 (342)
T 2yx0_A 76 PVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPM- 154 (342)
T ss_dssp SCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGG-
T ss_pred eChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCccc-
Confidence 44 7999999999986532 1123556777665544321 1 25779997 88863
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC--CCeeecchhchH-HHHhhhcCC--CCCHHHHH
Q 018731 161 IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVK-RLQRIVRDP--RAGYEQSL 235 (351)
Q Consensus 161 l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG--~~~i~~~ies~~-~~~~~~r~~--~~~~~~~l 235 (351)
+. ..+.++++.+++. ++.+.+.|++.. ++.++.|+++| ++.+.+++++.+ +.++.++++ +.++++++
T Consensus 155 l~----~~l~~ll~~~~~~--g~~i~l~TNG~~--~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~ 226 (342)
T 2yx0_A 155 LY----PYMGDLVEEFHKR--GFTTFIVTNGTI--PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERIL 226 (342)
T ss_dssp GS----TTHHHHHHHHHHT--TCEEEEEECSCC--HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHH
T ss_pred ch----hhHHHHHHHHHHC--CCcEEEEcCCCc--HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHH
Confidence 32 2688889888886 677777666543 88899999998 999999999975 466666522 45799999
Q ss_pred HHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc-CCCCCc-ccccCCCCHHHHHHHHHHHHh
Q 018731 236 EVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL-QPTPLH-LTVKEYVTPEKFDFWKAYGES 313 (351)
Q Consensus 236 ~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l-~PTp~~-~~~~~~v~~~e~~~~~~~~~~ 313 (351)
++++.+++ .|+.+...+++.-|+|.+++.++++++++++++.+.+..|. .|++.. .......+++++.++.+.+.+
T Consensus 227 ~~i~~l~~--~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~ 304 (342)
T 2yx0_A 227 RFLELMRD--LPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVK 304 (342)
T ss_dssp HHHHHHTT--CSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHh--CCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHH
Confidence 99999999 89998888888558888889999999999999998875443 222111 111245677888887777665
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=137.69 Aligned_cols=199 Identities=14% Similarity=0.163 Sum_probs=124.6
Q ss_pred EEEEeec-cCCCCCCcCcccCCCC----------CCCCCCchhHHHHHHHHHh---------------------CCCcEE
Q 018731 104 ATIMLLG-DTCTRGCRFCAVKTSR----------NPAPPDPMEPENTAKAIAS---------------------WGVDYI 151 (351)
Q Consensus 104 ~~~i~~s-~gC~~~C~FC~~~~~~----------~~~~~~~eei~~~~~~~~~---------------------~G~~~I 151 (351)
...+.++ .+||.+|.||..+... ....++++++.+.+..... ..++.|
T Consensus 52 ~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 52 CIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred eEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 3445677 7999999999966411 1133566777655443211 225689
Q ss_pred EEe-ccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCC-C
Q 018731 152 VLT-SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP-R 228 (351)
Q Consensus 152 ~lt-gg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~-~ 228 (351)
.|+ ||+|. +. +.+.++++.+++. ++.+.+.|++.. ++.++.| |++.+.+++++.++ .++.+++. .
T Consensus 132 ~~s~gGEPl-l~----~~l~~li~~~~~~--g~~~~l~TNG~~--~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~~ 199 (311)
T 2z2u_A 132 AISLSGEPT-LY----PYLDELIKIFHKN--GFTTFVVSNGIL--TDVIEKI---EPTQLYISLDAYDLDSYRRICGGKK 199 (311)
T ss_dssp EECSSSCGG-GS----TTHHHHHHHHHHT--TCEEEEEECSCC--HHHHHHC---CCSEEEEECCCSSTTTC----CCCH
T ss_pred EEeCCcCcc-ch----hhHHHHHHHHHHC--CCcEEEECCCCC--HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCcc
Confidence 998 78874 32 3588999999886 677777666542 5555544 89999999999754 56666522 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCcccccCCCCHHHHH
Q 018731 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFD 305 (351)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P---Tp~~~~~~~~v~~~e~~ 305 (351)
.++++++++++.+++ .| .+...+++.-|.+. ++.++++++++++++.+.+.+|. | ++..+......+++++.
T Consensus 200 ~~~~~v~~~i~~l~~--~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~-p~g~~~~~~~~~~~~~~~e~~ 274 (311)
T 2z2u_A 200 EYWESILNTLDILKE--KK-RTCIRTTLIRGYND-DILKFVELYERADVHFIELKSYM-HVGYSQKRLKKEDMLQHDEIL 274 (311)
T ss_dssp HHHHHHHHHHHHHTT--SS-SEEEEEEECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------------CCCCHHHHH
T ss_pred chHHHHHHHHHHHHh--cC-CEEEEEEEECCcch-hHHHHHHHHHHcCCCEEEEEeeE-EccccccccccccCCCHHHHH
Confidence 579999999999998 77 66555554336666 88999999999999999986554 5 33222123467888888
Q ss_pred HHHHHHHh-cCccee
Q 018731 306 FWKAYGES-IGFRYV 319 (351)
Q Consensus 306 ~~~~~~~~-~G~~~~ 319 (351)
++.+.+.+ .|+...
T Consensus 275 ~~~~~l~~~~g~~~~ 289 (311)
T 2z2u_A 275 KLAKMLDENSSYKLI 289 (311)
T ss_dssp HHHHHHHTSSSEEEE
T ss_pred HHHHHHHHhcCceEE
Confidence 87777766 787654
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=131.41 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=139.1
Q ss_pred eccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHh----------CCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHH
Q 018731 109 LGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----------WGVDYIVLT-SVDRDDIPDGGSGHFARTVKAMK 177 (351)
Q Consensus 109 ~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~----------~G~~~I~lt-gg~~~~l~~~~~~~~~~li~~ik 177 (351)
.+.||+.+|.||..........++++|+.+.+..... .++..|+|+ ||+|. +. .+.+.++++.++
T Consensus 121 sq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPL-ln---~d~v~~~i~~lk 196 (404)
T 3rfa_A 121 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL-LN---LNNVVPAMEIML 196 (404)
T ss_dssp CEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGG-GC---HHHHHHHHHHHH
T ss_pred eCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCcc-cC---HHHHHHHHHHHH
Confidence 4689999999999875432234778898877765432 247899999 58862 32 578899999998
Q ss_pred HhCCCc-----EEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcC--CCCCHHHHHHHHHHH-HHhCCCC
Q 018731 178 KQKPDI-----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHA-KLSKKGL 248 (351)
Q Consensus 178 ~~~p~i-----~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~--~~~~~~~~l~~i~~~-~~~~~Gi 248 (351)
+.. ++ .+.+.|++.. +.++.|.+.+...+.+++.+.++ .++.+.+ ++.+.++++++++.. .+ .|.
T Consensus 197 ~~~-Gl~~s~r~itlsTnG~~---p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~--~g~ 270 (404)
T 3rfa_A 197 DDF-GFGLSKRRVTLSTSGVV---PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEK--SNA 270 (404)
T ss_dssp STT-TTCCCGGGEEEEESCCH---HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHH--CTT
T ss_pred hhc-CcCcCCCceEEECCCcH---HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHH--hCC
Confidence 742 44 5666666542 56788888866677889998765 5654431 256899999999544 45 454
Q ss_pred ---e--EEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHHHHHHHHHHHhcCcce
Q 018731 249 ---I--TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (351)
Q Consensus 249 ---~--v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e~~~~~~~~~~~G~~~ 318 (351)
. +...+|-|++++.+++.++++++++++. .+.+.+| .|.+.. .....+++++.+++++++..|+.-
T Consensus 271 ~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~-~VnLIpy-nP~~~~--~~~~ps~e~i~~f~~iL~~~Gi~v 341 (404)
T 3rfa_A 271 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPFPGA--PYGRSSNSRIDRFSKVLMSYGFTT 341 (404)
T ss_dssp TTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCE-EEEEEEC-CCCTTC--CCCBCCHHHHHHHHHHHHHTTCEE
T ss_pred CcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCC-cEEEEec-cCCCCC--CCCCCCHHHHHHHHHHHHHcCCcE
Confidence 4 4555666889999999999999999875 4555444 464432 234567889999999999998853
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=129.76 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=123.4
Q ss_pred EEEEeeccCCCCCCcCcccCCCCC-C-CCCCchhHHHHHHHHHh-CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC
Q 018731 104 ATIMLLGDTCTRGCRFCAVKTSRN-P-APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (351)
Q Consensus 104 ~~~i~~s~gC~~~C~FC~~~~~~~-~-~~~~~eei~~~~~~~~~-~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~ 180 (351)
...+.+|++|+.+|.||......+ . ..++.+++.+.++.+.+ .|++.|.|+||+|...+ -+.+.++++.+++.
T Consensus 116 ~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~---d~~L~~il~~l~~~- 191 (416)
T 2a5h_A 116 RVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVS---DETLEYIIAKLREI- 191 (416)
T ss_dssp EEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSC---HHHHHHHHHHHHTS-
T ss_pred EEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCC---HHHHHHHHHHHHhc-
Confidence 456678999999999998765332 1 23667889888888887 79999999999974333 13588999999874
Q ss_pred CCc-EEEEeecC-----CCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee
Q 018731 181 PDI-MVECLTSD-----FRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (351)
Q Consensus 181 p~i-~i~~~~~~-----~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (351)
+++ .+.+.|++ ..++++.++.|+++ +.+.+++++... +. -+ ++++++++.+++ .|+.+....
T Consensus 192 ~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~--~e-----i~-~~v~~ai~~L~~--aGi~v~i~~ 259 (416)
T 2a5h_A 192 PHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP--NE-----IT-EESTRACQLLAD--AGVPLGNQS 259 (416)
T ss_dssp TTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG--GG-----CC-HHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH--HH-----Hh-HHHHHHHHHHHH--cCCEEEEEE
Confidence 444 45554443 23579999999998 778888877433 11 12 899999999999 899766554
Q ss_pred ee--eCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 255 ML--GLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 255 Iv--GlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
++ |++++.+++.++++++.++|++...+
T Consensus 260 vll~GvNd~~e~l~~l~~~l~~lgv~~~~i 289 (416)
T 2a5h_A 260 VLLRGVNDCVHVMKELVNKLVKIRVRPYYI 289 (416)
T ss_dssp ECCTTTTCSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 44 78899999999999999999987666
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=94.19 Aligned_cols=157 Identities=11% Similarity=0.129 Sum_probs=115.7
Q ss_pred cEEEEeccCCCCCCCCcHHHH-HHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchH-HHHhhhcC
Q 018731 149 DYIVLTSVDRDDIPDGGSGHF-ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRD 226 (351)
Q Consensus 149 ~~I~ltgg~~~~l~~~~~~~~-~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~-~~~~~~r~ 226 (351)
..|.|+||+|. +. .++ .++++.+++. ++.+.+.|++. ++++.++.|.++ ++.+.+++++.+ +.++.++
T Consensus 5 ~~v~~tGGEPl-l~----~~~~~~l~~~~~~~--g~~~~l~TNG~-l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~- 74 (182)
T 3can_A 5 GGVTFCGGEPL-LH----PEFLIDILKRCGQQ--GIHRAVDTTLL-ARKETVDEVMRN-CELLLIDLKSMDSTVHQTFC- 74 (182)
T ss_dssp CCEEECSSTGG-GS----HHHHHHHHHHHHHT--TCCEEEECTTC-CCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHH-
T ss_pred CEEEEEccccc-CC----HHHHHHHHHHHHHC--CCcEEEECCCC-CCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHh-
Confidence 46899999973 33 345 6999999986 66777767766 588999999988 999999999974 4677777
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEe--eeeeCCCCHHHHHHHHHHHHhC-CC-CEEeeecccCCCCCc----------
Q 018731 227 PRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGLGESDDDLKEAMADLRSI-DV-DILTLGQYLQPTPLH---------- 292 (351)
Q Consensus 227 ~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~IvGlgEt~e~~~~~l~~l~~l-g~-d~i~i~~~l~PTp~~---------- 292 (351)
+.++++++++++.+++ .|+.+... ++-|+.++.+++.+.++++.++ |+ ..+.+.+| .|....
T Consensus 75 -g~~~~~i~~~i~~l~~--~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~-~p~g~~~~~~l~~~y~ 150 (182)
T 3can_A 75 -DVPNELILKNIRRVAE--ADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY-HDIGKGKHAKLGSIYN 150 (182)
T ss_dssp -SSCSHHHHHHHHHHHH--TTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEEC-CC--------------
T ss_pred -CCCHHHHHHHHHHHHh--CCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecC-cccCHHHHHHhCCcCc
Confidence 4457999999999998 78765444 4556678999999999999999 98 78887544 462211
Q ss_pred ccccCCCCHHH--HHHHHHHHHhcCccee
Q 018731 293 LTVKEYVTPEK--FDFWKAYGESIGFRYV 319 (351)
Q Consensus 293 ~~~~~~v~~~e--~~~~~~~~~~~G~~~~ 319 (351)
+......++++ +.++.+.+++.|+...
T Consensus 151 ~~~~~~~~~e~~~l~~~~~~~~~~g~~~~ 179 (182)
T 3can_A 151 PKGYKMQTPSEEVQQQCIQILTDYGLKAT 179 (182)
T ss_dssp ----CCBCCCHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCceE
Confidence 00112345566 8899999998888643
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=80.83 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=94.7
Q ss_pred EeeccCCCCCCcCcccCCCCC--C-C--CCCchhHHHHHHH-HHhCCCc-EEEEeccCCCCCCC-CcHHHHHHHHHHHHH
Q 018731 107 MLLGDTCTRGCRFCAVKTSRN--P-A--PPDPMEPENTAKA-IASWGVD-YIVLTSVDRDDIPD-GGSGHFARTVKAMKK 178 (351)
Q Consensus 107 i~~s~gC~~~C~FC~~~~~~~--~-~--~~~~eei~~~~~~-~~~~G~~-~I~ltgg~~~~l~~-~~~~~~~~li~~ik~ 178 (351)
++...||+++|.||+.....+ + . ....+++++.++. +.+.+.+ ..+-+|.+.|.++- .......++++.+.+
T Consensus 111 ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~~ 190 (368)
T 4fhd_A 111 IPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIGA 190 (368)
T ss_dssp CCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHHH
T ss_pred eCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHHh
Confidence 567999999999998765322 1 1 1334666655543 3334444 33344444333431 111234566776666
Q ss_pred hCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 179 QKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 179 ~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
. ++..+++.|-....+ .+..+...|.-.|.+++.+ +++.+.+-....+.++++++++.+.+ +|+.|...+.-=+
T Consensus 191 ~-~~~~v~i~TKs~lid--~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~--aGipv~v~iaPIi 264 (368)
T 4fhd_A 191 T-DYGRLRFVTKYEHVD--HLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAG--AGYKLGFVVAPIY 264 (368)
T ss_dssp C-SSEEEEEEESCCCCG--GGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHH--TTCEEEEEEEEEC
T ss_pred C-CCceEEEEeCCcCHH--HHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHH--CCCeEEEEEeCcC
Confidence 4 455676666433222 2333444455556666655 44444443224589999999999999 9999877774434
Q ss_pred -CCCH-HHHHHHHHHHHh
Q 018731 259 -GESD-DDLKEAMADLRS 274 (351)
Q Consensus 259 -gEt~-e~~~~~l~~l~~ 274 (351)
++++ ++..+.++.+.+
T Consensus 265 P~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 265 RHEGWERGYFELFQELAR 282 (368)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 5655 577777775544
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00017 Score=66.47 Aligned_cols=145 Identities=18% Similarity=0.229 Sum_probs=101.0
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~-l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.++.++.+++++.+.+.|++.|-++++..+. .+. .....++++.+++ .+++.+.++.+ +.+.++...++|++
T Consensus 23 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~d~~~~~~~~~~-~~~~~~~~l~~----~~~~i~~a~~ag~~ 95 (298)
T 2cw6_A 23 IVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQ--MGDHTEVLKGIQK-FPGINYPVLTP----NLKGFEAAVAAGAK 95 (298)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGG--GTTHHHHHHHSCC-CTTCBCCEECC----SHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccc--cCCHHHHHHHHhh-CCCCEEEEEcC----CHHhHHHHHHCCCC
Confidence 4678899999999999999999887654321 121 1233456666655 45665554442 57889999999999
Q ss_pred eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC------CCHHHHHHHHHHHHhCCCCEE
Q 018731 209 VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG------ESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 209 ~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg------Et~e~~~~~l~~l~~lg~d~i 280 (351)
.|.+..-+.+.. .+.++ .....++...+.++.+++ .|+.+..++++-+| -+.+.+.+.++.+.++|++.+
T Consensus 96 ~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~--~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 173 (298)
T 2cw6_A 96 EVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS--ANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEI 173 (298)
T ss_dssp EEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH--TTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEE
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 998865443332 23333 112356677778888899 99999888875442 368899999999999999988
Q ss_pred eee
Q 018731 281 TLG 283 (351)
Q Consensus 281 ~i~ 283 (351)
.+.
T Consensus 174 ~l~ 176 (298)
T 2cw6_A 174 SLG 176 (298)
T ss_dssp EEE
T ss_pred Eec
Confidence 873
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0028 Score=58.52 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=99.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCC-CCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~-~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.++.++.+++++.+.+.|++.|-+++...+ ..+. .....++++.+++. ++..+.++.+ +.+-++...++|++
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~d~~~~~~~~~~~-~~~~~~~l~~----~~~~i~~a~~~g~~ 96 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYIEITSFVHPKWIPA--LRDAIDVAKGIDRE-KGVTYAALVP----NQRGLENALEGGIN 96 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-TTCEEEEECC----SHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cCCHHHHHHHhhhc-CCCeEEEEeC----CHHhHHHHHhCCcC
Confidence 467789999999999999999988764322 1221 11233556666554 6777776654 56789999999999
Q ss_pred eeecchhchHHH-HhhhcCCCCCH----HHHHHHHHHHHHhCCCCeEEEeeeeeCC------CCHHHHHHHHHHHHhCCC
Q 018731 209 VFAHNIETVKRL-QRIVRDPRAGY----EQSLEVLKHAKLSKKGLITKSSIMLGLG------ESDDDLKEAMADLRSIDV 277 (351)
Q Consensus 209 ~i~~~ies~~~~-~~~~r~~~~~~----~~~l~~i~~~~~~~~Gi~v~~~~IvGlg------Et~e~~~~~l~~l~~lg~ 277 (351)
.|.+..-+.+.. .+.+ +.+. +...+.++.+++ .|+.+..+++.-+| -+.+.+.+.++.+.++|+
T Consensus 97 ~v~i~~~~sd~~~~~~l---~~s~~e~l~~~~~~v~~ak~--~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga 171 (307)
T 1ydo_A 97 EACVFMSASETHNRKNI---NKSTSESLHILKQVNNDAQK--ANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGI 171 (307)
T ss_dssp EEEEEEESSHHHHHTTT---CSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred EEEEEeecCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--CCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 998765443332 2222 2344 556777888888 99998888776553 467889999999999999
Q ss_pred CEEee
Q 018731 278 DILTL 282 (351)
Q Consensus 278 d~i~i 282 (351)
+.+.+
T Consensus 172 ~~i~l 176 (307)
T 1ydo_A 172 SELSL 176 (307)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 98877
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0011 Score=60.83 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=99.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+.++..++++.+.+.|++.|-+++...+.+ + ......++++.+++. +++.+.++.+ +.+.++...++|++.
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p--~~~~~~e~~~~i~~~-~~~~v~~l~~----n~~~i~~a~~~G~~~ 95 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVSPKWVP--QLADSREVMAGIRRA-DGVRYSVLVP----NMKGYEAAAAAHADE 95 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCG--GGTTHHHHHHHSCCC-SSSEEEEECS----SHHHHHHHHHTTCSE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcCccccc--cccCHHHHHHHHHhC-CCCEEEEEeC----CHHHHHHHHHCCCCE
Confidence 6778999999999999999998865332211 1 112345777777664 6778766553 578999999999999
Q ss_pred eecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeee--eeC----CCCHHHHHHHHHHHHhCCCCEEe
Q 018731 210 FAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM--LGL----GESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 210 i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I--vGl----gEt~e~~~~~l~~l~~lg~d~i~ 281 (351)
|.+.+-+.+... ..++ .....++...+.++.+++ .|+.|.+.+. +|. .-+.+++.+.++.+.++|++.+.
T Consensus 96 V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~--~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~ 173 (295)
T 1ydn_A 96 IAVFISASEGFSKANINCTIAESIERLSPVIGAAIN--DGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVS 173 (295)
T ss_dssp EEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEE
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 987653333322 2121 111244555566888899 9999886665 332 24688899999999999999988
Q ss_pred ee
Q 018731 282 LG 283 (351)
Q Consensus 282 i~ 283 (351)
+.
T Consensus 174 l~ 175 (295)
T 1ydn_A 174 LG 175 (295)
T ss_dssp EE
T ss_pred ec
Confidence 84
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0021 Score=59.18 Aligned_cols=145 Identities=19% Similarity=0.285 Sum_probs=98.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCC-CCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~-~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
..+.++..++++.+.+.|++.|-+++...+ ..+. .....++++.+.+. +++.+.++.+ +.+.++...++|++
T Consensus 26 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~--~~d~~~~~~~~~~~-~~~~~~~l~~----~~~~i~~a~~aG~~ 98 (302)
T 2ftp_A 26 PIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQ--MAGSAEVFAGIRQR-PGVTYAALAP----NLKGFEAALESGVK 98 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-TTSEEEEECC----SHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccc--ccCHHHHHHHhhhc-CCCEEEEEeC----CHHHHHHHHhCCcC
Confidence 467788999999999999999988654321 1221 12334556666543 6777766553 67899999999999
Q ss_pred eeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC------CCHHHHHHHHHHHHhCCCCEE
Q 018731 209 VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG------ESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 209 ~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg------Et~e~~~~~l~~l~~lg~d~i 280 (351)
.|.+..-+.+-. .+.++ ......+...+.++.+++ .|+.|...+..-+| -+.+.+.+.++.+.+.|+|.+
T Consensus 99 ~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~--~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i 176 (302)
T 2ftp_A 99 EVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQ--HQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEV 176 (302)
T ss_dssp EEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEE
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 987654333322 23332 012244556667788888 99998877765442 367888899999999999988
Q ss_pred eee
Q 018731 281 TLG 283 (351)
Q Consensus 281 ~i~ 283 (351)
.+.
T Consensus 177 ~l~ 179 (302)
T 2ftp_A 177 SLG 179 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 873
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.009 Score=55.82 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=95.0
Q ss_pred CCCchhHHHHHH-HHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH--hCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 130 PPDPMEPENTAK-AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK--QKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 130 ~~~~eei~~~~~-~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~--~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
..+.++.+++++ .+.+.|++.|-+++... ...+++.+.++.+.... ..++..+.++.+.. ..++...++|
T Consensus 37 ~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~~~----~~i~~a~~~g 109 (337)
T 3ble_A 37 SFSTSEKLNIAKFLLQKLNVDRVEIASARV---SKGELETVQKIMEWAATEQLTERIEILGFVDGN----KTVDWIKDSG 109 (337)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEETTS---CTTHHHHHHHHHHHHHHTTCGGGEEEEEESSTT----HHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCCC---ChhHHHHHHHHHhhhhhhccCCCCeEEEEccch----hhHHHHHHCC
Confidence 366788899999 99999999998865432 11122333333322111 34566777666532 3789999999
Q ss_pred CCeeecchhchHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeee---eCCCCHHHHHHHHHHHHhCCCCEEe
Q 018731 207 LDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIML---GLGESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 207 ~~~i~~~ies~~~~-~~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv---GlgEt~e~~~~~l~~l~~lg~d~i~ 281 (351)
++.|.+...+.+.. .+.++ .+....+...+.++.+++ .|+.+..++.. +.-.+.+.+.+.++.+.++|++.+.
T Consensus 110 ~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 187 (337)
T 3ble_A 110 AKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIK--SGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIF 187 (337)
T ss_dssp CCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEE
Confidence 99998765544432 23333 011244566677788888 99998777665 3344678889999999999999888
Q ss_pred e
Q 018731 282 L 282 (351)
Q Consensus 282 i 282 (351)
+
T Consensus 188 l 188 (337)
T 3ble_A 188 L 188 (337)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.039 Score=52.96 Aligned_cols=141 Identities=21% Similarity=0.168 Sum_probs=96.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++-+++++.+.+.|++.|=++ .|. .. +.-.+.++.+.+......+..... -+.+-++...++|++.
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG--~P~-as----p~d~~~~~~i~~~~~~~~v~~~~r---~~~~di~~A~~aG~~~ 126 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELT--SPV-AS----EQSRQDCEAICKLGLKCKILTHIR---CHMDDARVAVETGVDG 126 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEC--CTT-SC----HHHHHHHHHHHTSCCSSEEEEEEE---SCHHHHHHHHHTTCSE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEe--ecc-cC----HHHHHHHHHHHhcCCCCEEEEeec---cChhhHHHHHHcCCCE
Confidence 4677889999999999999998884 332 22 344566667776533344432211 2556789999999999
Q ss_pred eecchhchHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~-~~~r-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+-+.+-.. ..++ .+....+...+.++.+++ .|+.|..+..-++.-+.+.+.+.++.+.+.|++.+.+
T Consensus 127 V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~--~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l 199 (423)
T 3ivs_A 127 VDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKS--KGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGI 199 (423)
T ss_dssp EEEEEEC-------------CHHHHHHHHHHHHHHT--TTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCcccc
Confidence 887655543322 1111 112235677788999999 9999888877777778899999999999999998777
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.043 Score=50.90 Aligned_cols=141 Identities=15% Similarity=0.066 Sum_probs=94.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc----
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS---- 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a---- 205 (351)
.++.++.+++++.+.+.|++.|=++. | ... ...+ +.++.+.+..++..+.++... ..+-++.-.++
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~--p-~~~---~~d~-e~v~~i~~~~~~~~i~~l~r~---~~~~i~~a~~al~~a 93 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGF--P-VSS---PGDF-NSVVEITKAVTRPTICALTRA---KEADINIAGEALRFA 93 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEEC--T-TSC---HHHH-HHHHHHHHHCCSSEEEEECCS---CHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC--C-CCC---HhHH-HHHHHHHHhCCCCEEEEeecC---CHHHHHHHHHhhccc
Confidence 36678889999999999999987743 2 122 2334 445667666678888776532 34444544444
Q ss_pred CCCeeecchhchHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 206 GLDVFAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 206 G~~~i~~~ies~~~~~--~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|++.|.+..-+.+-.. +..+.+....+...+.++.+++ .|+.+..+...+.--+.+.+.+.++.+.+.|++.+.+
T Consensus 94 g~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~--~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 94 KRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKK--VVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp SSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHT--TSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEe
Confidence 9999876544333321 2112234567778888999999 9998776666554566788889999999999998776
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.019 Score=53.79 Aligned_cols=137 Identities=14% Similarity=0.101 Sum_probs=96.7
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEe-----ccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHH
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLT-----SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLV 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~lt-----gg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~ 203 (351)
.+++++..++++.+.+.|++.|=++ ++..+.. ......-.+.++.+++..|++.+.++ .++. ..++.++...
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~-g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~-~~~~~i~~a~ 103 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNY-GFGRHTDLEYIEAVAGEISHAQIATLLLPGI-GSVHDLKNAY 103 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTT-BCCSSCHHHHHHHHHTTCSSSEEEEEECBTT-BCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc-cCCCCCHHHHHHHHHhhCCCCEEEEEecCCc-ccHHHHHHHH
Confidence 4677889999999999999999884 2211111 00012235667777776678888776 4432 3678999999
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
++|++.+.+.. .. ...+...+.++.+++ .|+.+...+.-...-+.+.+.+.++.+.+.|++.+.+
T Consensus 104 ~aGvd~v~I~~-~~-----------s~~~~~~~~i~~ak~--~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l 168 (345)
T 1nvm_A 104 QAGARVVRVAT-HC-----------TEADVSKQHIEYARN--LGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM 168 (345)
T ss_dssp HHTCCEEEEEE-ET-----------TCGGGGHHHHHHHHH--HTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred hCCcCEEEEEE-ec-----------cHHHHHHHHHHHHHH--CCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 99999986642 11 122345667778888 8998877776556677888999999999999998777
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.13 Score=46.83 Aligned_cols=141 Identities=19% Similarity=0.083 Sum_probs=91.8
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-HHHHHHHHHcCCC
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLD 208 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-~e~l~~L~~aG~~ 208 (351)
.++.++.+++++.+.+.|++.|=+++.. .. ...+ +.++.+.+..++..+.++.+....+ +..++.++++|++
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~---~~---~~d~-e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~~~~~ag~~ 95 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPI---SS---PGDF-ECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSP 95 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGG---GC---HHHH-HHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC---ccHH-HHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHhhcCCC
Confidence 3667889999999999999999875421 11 1233 3355666666778887766532101 2234444557999
Q ss_pred eeecchhchHHHH-hhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 209 VFAHNIETVKRLQ-RIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 209 ~i~~~ies~~~~~-~~~r~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.|.+-+-+.+-.. +.+ +.+.++ ..+.++.+++ .|+.+..+...+..-+.+.+.+.++.+.++|++.+.+
T Consensus 96 ~v~i~~~~Sd~~~~~nl---~~s~~e~l~~~~~~v~~a~~--~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 169 (293)
T 3ewb_X 96 QIHIFLATSDVHMEYKL---KMSRAEVLASIKHHISYARQ--KFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINI 169 (293)
T ss_dssp EEEEEEECSHHHHHHTT---CCCHHHHHHHHHHHHHHHHT--TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEecCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 9887554444322 222 345554 4555666777 8988776665444456788899999999999998877
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.1 Score=49.40 Aligned_cols=137 Identities=18% Similarity=0.165 Sum_probs=96.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCe
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.++.++.+++++.+.+.|++.|=+++ |. .. +...+.++.+++..+...+.++.. ...+-++...++|++.
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~--p~-~~----~~~~~~~~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 90 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTT--PV-AS----PQSRKDAEVLASLGLKAKVVTHIQ---CRLDAAKVAVETGVQG 90 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC--TT-SC----HHHHHHHHHHHTSCCSSEEEEEEE---SCHHHHHHHHHTTCSE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcC--Cc-CC----HHHHHHHHHHHhcCCCcEEEEEcc---cChhhHHHHHHcCCCE
Confidence 46778999999999999999998854 32 22 455677888887655555544322 1456689999999999
Q ss_pred eecchhchHHHHhhhcCCCCCH----HHHHHHHHHHHHhCCC--CeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 210 FAHNIETVKRLQRIVRDPRAGY----EQSLEVLKHAKLSKKG--LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~~~~----~~~l~~i~~~~~~~~G--i~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+..-+.+-..+.+ +.+. +...+.++.+++ .| +.+..++.-+..-+.+.+.+.++.+.+. ++.+.+
T Consensus 91 v~i~~~~s~~~~~~~---~~s~~e~l~~~~~~v~~ak~--~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l 163 (382)
T 2ztj_A 91 IDLLFGTSKYLRAPH---GRDIPRIIEEAKEVIAYIRE--AAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGL 163 (382)
T ss_dssp EEEEECC-----------CCCHHHHHHHHHHHHHHHHH--HCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEE
T ss_pred EEEEeccCHHHHHHh---CCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEe
Confidence 877553333222222 3354 456777888888 78 8888887776677889999999999999 998777
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.17 Score=47.71 Aligned_cols=138 Identities=18% Similarity=0.107 Sum_probs=91.3
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHH----HHHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAV----ETLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l----~~L~~a 205 (351)
.++.++.+++++.+.+.|++.|=.+. | ... ...+ +.++.+.+..++..+.++... +.+-+ +.++.+
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~--p-~~~---~~d~-e~v~~i~~~~~~~~i~~l~r~---~~~di~~a~~al~~a 99 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGF--A-AAS---PGDF-EAVNAIAKTITKSTVCSLSRA---IERDIRQAGEAVAPA 99 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEE--G-GGC---HHHH-HHHHHHHTTCSSSEEEEEEES---SHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC--C-CCC---HHHH-HHHHHHHHhCCCCeEEEEecC---CHHHHHHHHHHHhhC
Confidence 46778999999999999999887643 2 122 1233 344556655667777766542 33333 444559
Q ss_pred CCCeeecchhchHHH-HhhhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEE
Q 018731 206 GLDVFAHNIETVKRL-QRIVRDPRAGYEQSL----EVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 206 G~~~i~~~ies~~~~-~~~~r~~~~~~~~~l----~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i 280 (351)
|+++|.+..-+.+-. ...+ +.+.++.+ +.++.+++ .|..+..+...+.--+.+.+.+.++.+.+.|++.+
T Consensus 100 g~~~v~if~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~a~~--~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i 174 (370)
T 3rmj_A 100 PKKRIHTFIATSPIHMEYKL---KMKPKQVIEAAVKAVKIARE--YTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTI 174 (370)
T ss_dssp SSEEEEEEEECSHHHHHHTT---CCCHHHHHHHHHHHHHHHTT--TCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEecCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--cCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEE
Confidence 999998765544432 2333 23555544 45667777 88877666655555667888999999999999988
Q ss_pred ee
Q 018731 281 TL 282 (351)
Q Consensus 281 ~i 282 (351)
.+
T Consensus 175 ~l 176 (370)
T 3rmj_A 175 NI 176 (370)
T ss_dssp EE
T ss_pred Ee
Confidence 77
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.061 Score=52.31 Aligned_cols=135 Identities=14% Similarity=0.085 Sum_probs=92.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCC-----CCCCCcHHHHHHHHHHHHHhCCCcEEEEeec--CC--CC------
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTS--DF--RG------ 194 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~-----~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~~--~~------ 194 (351)
.++.++.+++++.+.+.|+..|-.+++... .+.. .-.+.++.+++..|+..+.++.. +. ..
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~----d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv 101 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGE----DPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDV 101 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCC----CHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCC----CHHHHHHHHHHhCCCCeEEEEeccccccCcccccchh
Confidence 466788888899999999999988764310 0111 12345566666567776665542 11 11
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee--eeeCCCCHHHHHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADL 272 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~l 272 (351)
.+..++...++|++.|.+-. ...+.+...+.++.+++ .|..+..++ ..|...+.+.+.+.++.+
T Consensus 102 ~~~~v~~a~~~Gvd~i~if~------------~~sd~~ni~~~i~~ak~--~G~~v~~~i~~~~~~~~~~e~~~~~a~~l 167 (464)
T 2nx9_A 102 VDTFVERAVKNGMDVFRVFD------------AMNDVRNMQQALQAVKK--MGAHAQGTLCYTTSPVHNLQTWVDVAQQL 167 (464)
T ss_dssp HHHHHHHHHHTTCCEEEECC------------TTCCTHHHHHHHHHHHH--TTCEEEEEEECCCCTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCcCEEEEEE------------ecCHHHHHHHHHHHHHH--CCCEEEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 14678889999999886532 12233556678888998 899876555 445566889999999999
Q ss_pred HhCCCCEEee
Q 018731 273 RSIDVDILTL 282 (351)
Q Consensus 273 ~~lg~d~i~i 282 (351)
.+.|++.+.+
T Consensus 168 ~~~Gad~I~l 177 (464)
T 2nx9_A 168 AELGVDSIAL 177 (464)
T ss_dssp HHTTCSEEEE
T ss_pred HHCCCCEEEE
Confidence 9999998877
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.067 Score=52.89 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=93.2
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCC-----CCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec--C--CC------C
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-----DDIPDGGSGHFARTVKAMKKQKPDIMVECLTS--D--FR------G 194 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~-----~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~--~~------~ 194 (351)
.++.++.+++++.+.+.|++.|=++++.. ..+.. .=.+.++.+++..|+..+.++.. + +. .
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~----d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv 118 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE----DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEV 118 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCC----CHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCC----CHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccc
Confidence 46778888999999999999998876531 01111 12344556665567777766552 1 11 1
Q ss_pred CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee--eeeCCCCHHHHHHHHHHH
Q 018731 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADL 272 (351)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--IvGlgEt~e~~~~~l~~l 272 (351)
.+..++...++|++.|.+..- ..+.+...+.++.+++ .|..+...+ ..|..-+.+.+.+.++.+
T Consensus 119 ~~~~ve~a~~aGvd~vrIf~s------------~sd~~ni~~~i~~ak~--~G~~v~~~i~~~~~~~~~~e~~~~~a~~l 184 (539)
T 1rqb_A 119 VDRFVDKSAENGMDVFRVFDA------------MNDPRNMAHAMAAVKK--AGKHAQGTICYTISPVHTVEGYVKLAGQL 184 (539)
T ss_dssp HHHHHHHHHHTTCCEEEECCT------------TCCTHHHHHHHHHHHH--TTCEEEEEEECCCSTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCEEEEEEe------------hhHHHHHHHHHHHHHH--CCCeEEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 256789999999998865321 2233556788888888 899876555 445567889999999999
Q ss_pred HhCCCCEEee
Q 018731 273 RSIDVDILTL 282 (351)
Q Consensus 273 ~~lg~d~i~i 282 (351)
.++|++.+.+
T Consensus 185 ~~~Gad~I~L 194 (539)
T 1rqb_A 185 LDMGADSIAL 194 (539)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCCEEEe
Confidence 9999998777
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=94.41 E-value=1.6 Score=38.26 Aligned_cols=112 Identities=11% Similarity=0.154 Sum_probs=78.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++..+.++.+.+.|++-|-++--++ .-.+.++.+++.+|++.+.+-| .++.+.++...++|.+.|
T Consensus 43 ~~~~~a~~~a~al~~gGi~~iEvt~~t~---------~a~e~I~~l~~~~~~~~iGaGT---Vlt~~~a~~Ai~AGA~fI 110 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLPAAEITFRSD---------AAVEAIRLLRQAQPEMLIGAGT---ILNGEQALAAKEAGATFV 110 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHHHHHCTTCEEEEEC---CCSHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCCCEEeECC---cCCHHHHHHHHHcCCCEE
Confidence 3578889999999999999988864432 2357888888888887665532 358999999999999987
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.. |..+ .+.++.+++ .|+.+ |.|. -|..|+... .++|+|.+.++
T Consensus 111 vs--------------P~~~----~~vi~~~~~--~gi~~----ipGv-~TptEi~~A----~~~Gad~vK~F 154 (232)
T 4e38_A 111 VS--------------PGFN----PNTVRACQE--IGIDI----VPGV-NNPSTVEAA----LEMGLTTLKFF 154 (232)
T ss_dssp EC--------------SSCC----HHHHHHHHH--HTCEE----ECEE-CSHHHHHHH----HHTTCCEEEEC
T ss_pred Ee--------------CCCC----HHHHHHHHH--cCCCE----EcCC-CCHHHHHHH----HHcCCCEEEEC
Confidence 32 2322 244455666 67764 3343 277776555 46899988884
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=94.33 E-value=1.3 Score=39.66 Aligned_cols=135 Identities=14% Similarity=0.175 Sum_probs=89.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc--CCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a--G~~ 208 (351)
.+.+.+.+.+++..+.|.+-|-+.|+.. ...+.+++..+++.+++.. ++.+.+=| .+.+.++.-.++ |.+
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s~---~~eE~~rv~~vi~~l~~~~-~~pisIDT----~~~~v~~aal~a~~Ga~ 102 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGPT---ADDPVRVMEWLVKTIQEVV-DLPCCLDS----TNPDAIEAGLKVHRGHA 102 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCSC---SSCHHHHHHHHHHHHHHHC-CCCEEEEC----SCHHHHHHHHHHCCSCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcC---chhHHHHHHHHHHHHHHhC-CCeEEEeC----CCHHHHHHHHHhCCCCC
Confidence 4568888899999999999998877653 2235788999999998864 55554422 278899998888 988
Q ss_pred eee-cchhc--hHHHHhh---h-----------cCCCCCHH----HHHHHHHHHHHhCCCCe---EEEeeeeeC-CCCHH
Q 018731 209 VFA-HNIET--VKRLQRI---V-----------RDPRAGYE----QSLEVLKHAKLSKKGLI---TKSSIMLGL-GESDD 263 (351)
Q Consensus 209 ~i~-~~ies--~~~~~~~---~-----------r~~~~~~~----~~l~~i~~~~~~~~Gi~---v~~~~IvGl-gEt~e 263 (351)
-|+ ++.+. ++++... . ++...+.+ ...+.++.+.+ .|+. +-.|-.+|+ |.+.+
T Consensus 103 iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~--~Gi~~~~IilDPg~gfigk~~~ 180 (271)
T 2yci_X 103 MINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADA--HGIPMTELYIDPLILPVNVAQE 180 (271)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHH--TTCCGGGEEEECCCCCTTTSTH
T ss_pred EEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH--CCCCcccEEEecCCCccccCHH
Confidence 886 44432 1222111 0 00112433 44455666677 8996 788888888 88887
Q ss_pred HHHHHHHHHHhC
Q 018731 264 DLKEAMADLRSI 275 (351)
Q Consensus 264 ~~~~~l~~l~~l 275 (351)
+-.++++.++.+
T Consensus 181 ~~~~~l~~l~~~ 192 (271)
T 2yci_X 181 HAVEVLETIRQI 192 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665666555544
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=2.2 Score=38.35 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=81.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC-CCC---C-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDD---I-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~---l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.++...+.|.+-|-+.|.. .+. . ...+.+++..+++.+++. ++.|.+=| .+.+.++.-.++
T Consensus 26 ~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT----~~~~va~aAl~a 99 (280)
T 1eye_A 26 LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDT----MRADVARAALQN 99 (280)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEEC----SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeC----CCHHHHHHHHHc
Confidence 467888999999999999999887622 110 1 134467888888888764 54444322 256777777777
Q ss_pred CCCeeec-chhc-hHHHHhh------------hcC-CC--------C-C-----HHHHHHHHHHHHHhCCCCe---EEEe
Q 018731 206 GLDVFAH-NIET-VKRLQRI------------VRD-PR--------A-G-----YEQSLEVLKHAKLSKKGLI---TKSS 253 (351)
Q Consensus 206 G~~~i~~-~ies-~~~~~~~------------~r~-~~--------~-~-----~~~~l~~i~~~~~~~~Gi~---v~~~ 253 (351)
|.+.|+- +-.. .+++.+. +++ |. + + .+...+.++.+.+ .|+. +-.+
T Consensus 100 Ga~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~--~Gi~~~~IilD 177 (280)
T 1eye_A 100 GAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVA--AGVDPARLVLD 177 (280)
T ss_dssp TCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHH--TTCCGGGEEEE
T ss_pred CCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHH--cCCChhhEEEE
Confidence 7777652 2111 1111100 000 00 0 1 4445567777788 8986 6777
Q ss_pred eeeeCCCCHHHHHHHHHHHHhC
Q 018731 254 IMLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 254 ~IvGlgEt~e~~~~~l~~l~~l 275 (351)
--+||+.|.++-.++++.+.++
T Consensus 178 Pg~Gf~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 178 PGLGFAKTAQHNWAILHALPEL 199 (280)
T ss_dssp CCTTSSCCHHHHHHHHHTHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHh
Confidence 7778888887777766666543
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=93.78 E-value=2.3 Score=38.33 Aligned_cols=138 Identities=10% Similarity=0.112 Sum_probs=86.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEec-cCCCCC---C-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTS-VDRDDI---P-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltg-g~~~~l---~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++++.+.+++..+.|++-|-+.| +.++.- + ..+.+++..+++.+++.. ++.|.+=| .+.+.++.-.++
T Consensus 35 ~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT----~~~~va~aAl~a 109 (282)
T 1aj0_A 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDT----SKPEVIRESAKV 109 (282)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEEC----CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeC----CCHHHHHHHHHc
Confidence 4568888889999999999998876 332211 1 234567788888887764 55554422 266777777777
Q ss_pred CCCeeec-chhchHHHHhh------------hcCCCCC--------------HHHHHHHHHHHHHhCCCCe---EEEeee
Q 018731 206 GLDVFAH-NIETVKRLQRI------------VRDPRAG--------------YEQSLEVLKHAKLSKKGLI---TKSSIM 255 (351)
Q Consensus 206 G~~~i~~-~ies~~~~~~~------------~r~~~~~--------------~~~~l~~i~~~~~~~~Gi~---v~~~~I 255 (351)
|.+.|+- +-+..+++.+. +++...+ .+...+.++.+.+ .|+. +-.|--
T Consensus 110 Ga~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~--~Gi~~~~IilDPg 187 (282)
T 1aj0_A 110 GAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQ--AGIAKEKLLLDPG 187 (282)
T ss_dssp TCCEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHH--TTCCGGGEEEECC
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHH--cCCChhhEEEeCC
Confidence 8777752 21111111100 0100011 5556667778888 8996 777776
Q ss_pred eeCCCCHHHHHHHHHHHHhC
Q 018731 256 LGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~l 275 (351)
+|++.|.++-.++++.+.++
T Consensus 188 ~gf~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 188 FGFGKNLSHNYSLLARLAEF 207 (282)
T ss_dssp TTSSCCHHHHHHHHHTGGGG
T ss_pred CCcccCHHHHHHHHHHHHHH
Confidence 77888888777777777654
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.51 Score=43.40 Aligned_cols=138 Identities=11% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC--CC-CCC-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD--RD-DIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~--~~-~l~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
.+.+.+++.++++.+.|.+-|-+.|.. |. ..+ ..+.+++..+++.+++..|++.|.+=| .+.+.++.-.++|
T Consensus 62 ~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT----~~~~VaeaAl~aG 137 (318)
T 2vp8_A 62 FSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDT----WRAQVAKAACAAG 137 (318)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEEC----SCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeC----CCHHHHHHHHHhC
Confidence 457888899999999999988886532 11 121 123456667788888876676665422 2566777777777
Q ss_pred CCeee-cchhchHHHHhh------------hcCC-CC------CH------------HHHHHHHHHHHHhCCCCe---EE
Q 018731 207 LDVFA-HNIETVKRLQRI------------VRDP-RA------GY------------EQSLEVLKHAKLSKKGLI---TK 251 (351)
Q Consensus 207 ~~~i~-~~ies~~~~~~~------------~r~~-~~------~~------------~~~l~~i~~~~~~~~Gi~---v~ 251 (351)
.+-|+ ++-+..+++.+. +++. .. .| +...+.++.+.+ .|+. +-
T Consensus 138 a~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~--aGI~~~~Ii 215 (318)
T 2vp8_A 138 ADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVA--AGVAREKVL 215 (318)
T ss_dssp CCEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHH--TTCCGGGEE
T ss_pred CCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHH--cCCChhhEE
Confidence 77664 111111111100 0000 00 11 334455777778 8995 67
Q ss_pred EeeeeeCCCCHHHHHHHHHHHHh
Q 018731 252 SSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 252 ~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
.|=-+||+.|.++-.++++.+.+
T Consensus 216 lDPG~GF~Kt~~~nl~ll~~l~~ 238 (318)
T 2vp8_A 216 IDPAHDFGKNTFHGLLLLRHVAD 238 (318)
T ss_dssp EETTTTCCTTSHHHHHHHHTHHH
T ss_pred EcCCCCcccCHHHHHHHHHHHHH
Confidence 77677887777666666665554
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.59 E-value=2.7 Score=38.41 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=82.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC-CCCCC--------CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDDIP--------DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET 201 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~l~--------~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~ 201 (351)
.+++++.+.++++.+.|+.-|-+.|.. .+... ..+.+++..+++.+++.. ++.|.+=| .+.+.++.
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~vpISIDT----~~~~Va~a 120 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-PQLISVDT----SRPRVMRE 120 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-CSEEEEEC----SCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-CCeEEEeC----CCHHHHHH
Confidence 457888999999999999988886532 11111 112345777788887763 56665422 26788888
Q ss_pred HHHcCCCeee-cchhchHHHHhhh------------cCCCCC-------------HHHHHHHHHHHHHhCCCCe---EEE
Q 018731 202 LVHSGLDVFA-HNIETVKRLQRIV------------RDPRAG-------------YEQSLEVLKHAKLSKKGLI---TKS 252 (351)
Q Consensus 202 L~~aG~~~i~-~~ies~~~~~~~~------------r~~~~~-------------~~~~l~~i~~~~~~~~Gi~---v~~ 252 (351)
-.++|.+.|+ ++-...+++.+.+ ++...+ .+...+.++.+.+ .|+. +-.
T Consensus 121 Al~aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~--~GI~~~~Iil 198 (314)
T 3tr9_A 121 AVNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKK--AGISEDRIII 198 (314)
T ss_dssp HHHHTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHH--TTCCGGGEEE
T ss_pred HHHcCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHH--cCCCHhHEEE
Confidence 8888888775 2222222221110 100011 3344556677777 8984 666
Q ss_pred eeeee---CCCCHHHHHHHHHHHHh
Q 018731 253 SIMLG---LGESDDDLKEAMADLRS 274 (351)
Q Consensus 253 ~~IvG---lgEt~e~~~~~l~~l~~ 274 (351)
|=-+| ||.|.++=.++++.+..
T Consensus 199 DPG~G~~~F~Kt~~~n~~lL~~l~~ 223 (314)
T 3tr9_A 199 DPGFGQGNYGKNVSENFYLLNKLPE 223 (314)
T ss_dssp ECCCCSGGGCCCHHHHHHHHHTTHH
T ss_pred eCCCCchhhcCCHHHHHHHHHHHHH
Confidence 66678 88888766666555543
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=2.7 Score=38.28 Aligned_cols=120 Identities=15% Similarity=0.073 Sum_probs=72.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCC---CCCH----HHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDF---RGDL----RAVETL 202 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~---~~~~----e~l~~L 202 (351)
.+.+++.+.+..+.+.|++.|....|+++.-.+++..+-.++++.|++. .++.|.+. -|.+ ..+. +.++.=
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~-~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~K 172 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADLLNLKRK 172 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 4578888888888999999998887876433222344567888888876 35555432 2221 1122 233333
Q ss_pred HHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-C-CCHHHHHHH
Q 018731 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEA 268 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-g-Et~e~~~~~ 268 (351)
.++|.+.+. +..-++.+...+.++.+++ .|+. .-++.|+ . .+...+...
T Consensus 173 vdAGAdf~i-------------TQ~ffD~~~~~~f~~~~r~--~Gi~--vPIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 173 VDAGANRAI-------------TQFFFDVESYLRFRDRCVS--AGID--VEIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHHTCCEEE-------------ECCCSCHHHHHHHHHHHHH--TTCC--SCEECEECCCSCHHHHHHH
T ss_pred HHcCCCEEE-------------eCccCCHHHHHHHHHHHHh--cCCC--CcEEEEecccCCHHHHHHH
Confidence 468888751 1235677777777878887 7764 3566666 2 445544443
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=92.30 E-value=1.4 Score=38.93 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=84.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEE--eccC-CCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~l--tgg~-~~~l~~~~~~~~~~li~~ik~~~p~i~--i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+...+.++++.+.+.|++.+.+ ..|. -+.+. .| .++++.+++..|+.. +.....+ .+..++.++++
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit-~G----~~~v~~lr~~~p~~~ldvHLmv~~---p~~~i~~~~~a 108 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLT-FG----PMVLKALRDYGITAGMDVHLMVKP---VDALIESFAKA 108 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC-CC----HHHHHHHHHHTCCSCEEEEEECSS---CHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchh-cC----HHHHHHHHHhCCCCeEEEEEeeCC---HHHHHHHHHHc
Confidence 34556788888888889886544 3332 22232 12 356777777765543 3333332 35689999999
Q ss_pred CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 018731 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (351)
Q Consensus 206 G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~ 285 (351)
|.|.|++..|+.+ +. .+.++.+++ .|+++... +-.+...+.+.+. .+ .+|.+-++ -
T Consensus 109 GAd~itvH~Ea~~-----------~~---~~~i~~ir~--~G~k~Gva--lnp~Tp~e~l~~~----l~-~vD~VlvM-s 164 (246)
T 3inp_A 109 GATSIVFHPEASE-----------HI---DRSLQLIKS--FGIQAGLA--LNPATGIDCLKYV----ES-NIDRVLIM-S 164 (246)
T ss_dssp TCSEEEECGGGCS-----------CH---HHHHHHHHT--TTSEEEEE--ECTTCCSGGGTTT----GG-GCSEEEEE-C
T ss_pred CCCEEEEccccch-----------hH---HHHHHHHHH--cCCeEEEE--ecCCCCHHHHHHH----Hh-cCCEEEEe-e
Confidence 9999999877632 22 345566777 89865443 3222223333222 22 47887775 3
Q ss_pred cCC-CCCcccccCCCCHHHHHHHHHHHHhcC
Q 018731 286 LQP-TPLHLTVKEYVTPEKFDFWKAYGESIG 315 (351)
Q Consensus 286 l~P-Tp~~~~~~~~v~~~e~~~~~~~~~~~G 315 (351)
..| ...+ ....-..+...+++++....|
T Consensus 165 V~PGfgGQ--~fi~~~l~KI~~lr~~~~~~~ 193 (246)
T 3inp_A 165 VNPGFGGQ--KFIPAMLDKAKEISKWISSTD 193 (246)
T ss_dssp SCTTC--C--CCCTTHHHHHHHHHHHHHHHT
T ss_pred ecCCCCCc--ccchHHHHHHHHHHHHHHhcC
Confidence 356 2221 111222345566666665545
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=1.6 Score=39.57 Aligned_cols=138 Identities=15% Similarity=0.115 Sum_probs=72.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC-CC---CC-CCCcHHHHHHHHHHHHHhCCCcEEEEeecC--------------
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RD---DI-PDGGSGHFARTVKAMKKQKPDIMVECLTSD-------------- 191 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~-~~---~l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~-------------- 191 (351)
.+.+.+.+.++++.+.|.+-|-+.|.. .+ .. ...+.+++..+++.+++. ++.|.+=|..
T Consensus 49 ~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSIDT~~~~Va~aAl~aGa~i 126 (294)
T 2dqw_A 49 LDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVDTRKPEVAEEALKLGAHL 126 (294)
T ss_dssp ----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEECSCHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhCCCE
Confidence 456777888888899999998887622 11 01 134567888888888864 4444321210
Q ss_pred -----CCCCHHHHHHHHHcCCCeeecchh-ch-HHHHhhhcCCCCC------HHHHHHHHHHHHHhCCCCe-EEEeeeee
Q 018731 192 -----FRGDLRAVETLVHSGLDVFAHNIE-TV-KRLQRIVRDPRAG------YEQSLEVLKHAKLSKKGLI-TKSSIMLG 257 (351)
Q Consensus 192 -----~~~~~e~l~~L~~aG~~~i~~~ie-s~-~~~~~~~r~~~~~------~~~~l~~i~~~~~~~~Gi~-v~~~~IvG 257 (351)
+..+++.++..+++|+-.+-+..+ .. ..+... +.+. .+...+.++.+.+ .|+. +-.|--+|
T Consensus 127 INdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~---~~y~dv~~ev~~~l~~~i~~a~~--~Gi~~IilDPG~G 201 (294)
T 2dqw_A 127 LNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAH---ARYRDVVAEVKAFLEAQARRALS--AGVPQVVLDPGFG 201 (294)
T ss_dssp EECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGG---CCCSSHHHHHHHHHHHHHHHHHH--TTCSCEEEECCTT
T ss_pred EEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCcccccc---CccccHHHHHHHHHHHHHHHHHH--CCCCcEEEcCCCC
Confidence 002344444444444444333222 10 011100 1111 3345556777777 8986 44444457
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 018731 258 LGESDDDLKEAMADLRSI 275 (351)
Q Consensus 258 lgEt~e~~~~~l~~l~~l 275 (351)
||.|.++-.++++.++++
T Consensus 202 f~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 202 FGKLLEHNLALLRRLDEI 219 (294)
T ss_dssp SSCCHHHHHHHHHTHHHH
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 789888777777766553
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=92.05 E-value=1.6 Score=40.12 Aligned_cols=136 Identities=10% Similarity=0.101 Sum_probs=80.9
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccC-CCCCCCCcHHHH--HHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHH---H
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVD-RDDIPDGGSGHF--ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL---V 203 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~l~~~~~~~~--~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L---~ 203 (351)
.++.++.+++++.+.+.|+..|=++... +....+. ...+ .+.++.+++ .|+..+.++.++....++-++.+ .
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~-~~~~~~~e~l~~i~~-~~~~~~~~L~r~~~~~~~dv~~~~~a~ 97 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMG-KFGYTPVSVLKHLRN-ISTKKIAIMLNEKNTTPEDLNHLLLPI 97 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCC-HHHHCCHHHHHHHHH-HCCSEEEEEEEGGGCCGGGHHHHHGGG
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEecccCCcccccc-ccccChHHHHHHHhh-ccCCeEEEEecCCCCChhhHHHHHHhh
Confidence 4677899999999999999998776332 1111110 1222 355666666 47888887765421112223322 4
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCC-CHHHHHHHHHHHHhCCCCEEee
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgE-t~e~~~~~l~~l~~lg~d~i~i 282 (351)
++|++.+.+.. ..++.++..+.++.+++ .|+.+...+...-+- +.+.+.+.+..+ +.|++.+.+
T Consensus 98 ~~Gvd~~ri~~------------~~~nle~~~~~v~~ak~--~G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G~~~i~l 162 (320)
T 3dxi_A 98 IGLVDMIRIAI------------DPQNIDRAIVLAKAIKT--MGFEVGFNVMYMSKWAEMNGFLSKLKAI-DKIADLFCM 162 (320)
T ss_dssp TTTCSEEEEEE------------CGGGHHHHHHHHHHHHT--TTCEEEEEECCTTTGGGSTTSGGGGGGG-TTTCSEEEE
T ss_pred hcCCCEEEEEe------------cHHHHHHHHHHHHHHHH--CCCEEEEEEEeCCCCCCHHHHHHHHHHh-hCCCCEEEE
Confidence 47888875531 12357888899999999 999887776652222 222333333322 468888777
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.89 E-value=1.5 Score=38.08 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCC--CC-HHHHHHHHHcCCCeee
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--GD-LRAVETLVHSGLDVFA 211 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~--~~-~e~l~~L~~aG~~~i~ 211 (351)
.+.+.++.+.+.|++.|+|.--+++--- +.+...++++..... .++++- .-|.. .+ .+.++.|.+.|+++|.
T Consensus 77 ~M~~Di~~~~~~GadGvV~G~Lt~dg~i--D~~~~~~Li~~a~~~--~vTFHR-AFD~~~~~d~~~ale~L~~lGv~rIL 151 (224)
T 2bdq_A 77 IMEEDILRAVELESDALVLGILTSNNHI--DTEAIEQLLPATQGL--PLVFHM-AFDVIPKSDQKKSIDQLVALGFTRIL 151 (224)
T ss_dssp HHHHHHHHHHHTTCSEEEECCBCTTSSB--CHHHHHHHHHHHTTC--CEEECG-GGGGSCTTTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeeECCCCCc--CHHHHHHHHHHhCCC--eEEEEC-chhccCCcCHHHHHHHHHHcCCCEEE
Confidence 3456777888999999999554432222 256777777655432 344431 01211 23 5789999999999984
Q ss_pred c-chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 212 H-NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 212 ~-~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
- |-.. ..+..+-++.++.+.+...| ...+|.|=|=+.+.+.+. +.+.|++.++.+...
T Consensus 152 TSG~~~-----------~~~a~~g~~~L~~Lv~~a~~---ri~Im~GgGV~~~Ni~~l---~~~tGv~e~H~s~i~ 210 (224)
T 2bdq_A 152 LHGSSN-----------GEPIIENIKHIKALVEYANN---RIEIMVGGGVTAENYQYI---CQETGVKQAHGTRIT 210 (224)
T ss_dssp ECSCSS-----------CCCGGGGHHHHHHHHHHHTT---SSEEEECSSCCTTTHHHH---HHHHTCCEEEETTCC
T ss_pred CCCCCC-----------CCcHHHHHHHHHHHHHhhCC---CeEEEeCCCCCHHHHHHH---HHhhCCCEEcccccc
Confidence 2 2110 11133333444444321122 235788777777766654 345789888875443
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=5.9 Score=38.76 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+..+.++.+.+.|++.|.+.+.++. ...+.++++++++.+|++.+-+-. ..+.+.++.+.++|+|.|.++.
T Consensus 256 d~~era~aLveaGvd~I~Id~a~g~------~~~v~~~i~~i~~~~~~~~vi~g~---v~t~e~a~~~~~aGad~i~vg~ 326 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTAHGH------SQGVIDKVKEVRAKYPSLNIIAGN---VATAEATKALIEAGANVVKVGI 326 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTSEEEEEE---ECSHHHHHHHHHHTCSEEEECS
T ss_pred chHHHHHHHHhhccceEEecccccc------hhhhhhHHHHHHHhCCCceEEeee---eccHHHHHHHHHhCCCEEEECC
Confidence 4456677888899999999766541 367889999999998876554311 1378899999999999998754
Q ss_pred hchHH-HHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVKR-LQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~~-~~~~~r~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
....- ..+...+- ..+.....+..+.+++ .++.+-++. | --+.+|+.+.+ .+|++.+.++..+
T Consensus 327 g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~--~~iPVIa~G--G-I~~~~di~kal----a~GA~~V~vGs~~ 391 (511)
T 3usb_A 327 GPGSICTTRVVAGVGVPQLTAVYDCATEARK--HGIPVIADG--G-IKYSGDMVKAL----AAGAHVVMLGSMF 391 (511)
T ss_dssp SCSTTCCHHHHHCCCCCHHHHHHHHHHHHHT--TTCCEEEES--C-CCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCccccccccccCCCCCcHHHHHHHHHHHHh--CCCcEEEeC--C-CCCHHHHHHHH----HhCchhheecHHH
Confidence 33221 01111111 2234444455555555 566532211 1 24677777664 4799999887554
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=91.72 E-value=2.7 Score=42.97 Aligned_cols=135 Identities=14% Similarity=0.025 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHHhC--CCcEEEEeccCCC-----CCCCCcHHHHHHHHHHHHHhCCCcEEEEeecC--CC----C--
Q 018731 130 PPDPMEPENTAKAIASW--GVDYIVLTSVDRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTSD--FR----G-- 194 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~--G~~~I~ltgg~~~-----~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~--~~----~-- 194 (351)
+++.++.+++++.+.+. |+..|=+.||... .+.... .+.++.+++..|+..+.++... .. .
T Consensus 121 r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p----~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~ 196 (718)
T 3bg3_A 121 RVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECP----WRRLQELRELIPNIPFQMLLRGANAVGYTNYPD 196 (718)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCH----HHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCH----HHHHHHHHHHcccchHHHHhcccccccccccCC
Confidence 46788999999999887 5666877765421 122111 2445556666666666543321 10 0
Q ss_pred --CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee---C-C----CCHHH
Q 018731 195 --DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG---L-G----ESDDD 264 (351)
Q Consensus 195 --~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG---l-g----Et~e~ 264 (351)
..+.++...++|++.+.+.. + -...+.....++.+++ .|..+...+.+. . . -+.+.
T Consensus 197 ~~~~~~i~~a~~~Gvd~irIf~-s-----------~n~l~~l~~~i~~ak~--~G~~v~~~i~~~~d~~dp~r~~~~~e~ 262 (718)
T 3bg3_A 197 NVVFKFCEVAKENGMDVFRVFD-S-----------LNYLPNMLLGMEAAGS--AGGVVEAAISYTGDVADPSRTKYSLQY 262 (718)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEC-S-----------SCCHHHHHHHHHHHHT--TTSEEEEEEECCSCTTCTTCCTTCHHH
T ss_pred cchHHHHHHHHhcCcCEEEEEe-c-----------HHHHHHHHHHHHHHHH--cCCeEEEEEEeeccccCCCCCCCCHHH
Confidence 24678899999999986542 1 1245566677888888 898877666554 1 1 27788
Q ss_pred HHHHHHHHHhCCCCEEee
Q 018731 265 LKEAMADLRSIDVDILTL 282 (351)
Q Consensus 265 ~~~~l~~l~~lg~d~i~i 282 (351)
+.+.++.+.++|++.+.+
T Consensus 263 ~~~~a~~l~~~Ga~~I~l 280 (718)
T 3bg3_A 263 YMGLAEELVRAGTHILCI 280 (718)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 999999999999998887
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=3.5 Score=37.35 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=83.6
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC-CCC---CC-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDD---IP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~---l~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+.+.+.+.+++..+.|+.-|-+.|.. .+. .+ ..+.+++..+++.+++. ++.|.+=| .+.+.++.-.++
T Consensus 43 ~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~--~vpiSIDT----~~~~Va~aAl~a 116 (294)
T 2y5s_A 43 LARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL--NVPLSIDT----YKPAVMRAALAA 116 (294)
T ss_dssp -CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG--CSCEEEEC----CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC--CCeEEEEC----CCHHHHHHHHHc
Confidence 467888899999999999998887632 111 11 12345666777777654 44444322 267788887778
Q ss_pred CCCeee-cchhchHHHHhhhc------------C-CC--------C-C-----HHHHHHHHHHHHHhCCCCe---EEEee
Q 018731 206 GLDVFA-HNIETVKRLQRIVR------------D-PR--------A-G-----YEQSLEVLKHAKLSKKGLI---TKSSI 254 (351)
Q Consensus 206 G~~~i~-~~ies~~~~~~~~r------------~-~~--------~-~-----~~~~l~~i~~~~~~~~Gi~---v~~~~ 254 (351)
|.+-|+ ++-+..+++.+... + |. + + .+...+.++.+.+ .|+. +-.|-
T Consensus 117 Ga~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~--~Gi~~~~IilDP 194 (294)
T 2y5s_A 117 GADLINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRD--AGVAAERICVDP 194 (294)
T ss_dssp TCSEEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHH--TTCCGGGEEEEC
T ss_pred CCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHH--cCCChhhEEEeC
Confidence 887775 22222112221111 0 00 0 1 3445556777777 8996 77776
Q ss_pred eeeCCCCH-HHHHHHHHHHHhCC
Q 018731 255 MLGLGESD-DDLKEAMADLRSID 276 (351)
Q Consensus 255 IvGlgEt~-e~~~~~l~~l~~lg 276 (351)
-+|++.|. ++-.++++.+.++.
T Consensus 195 G~Gf~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 195 GFGFGKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp CTTSSSCTTHHHHHHHHTGGGGS
T ss_pred CCcccccchHHHHHHHHHHHHHH
Confidence 67788887 77778888777665
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=90.81 E-value=4 Score=36.71 Aligned_cols=100 Identities=11% Similarity=0.185 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| +|+|. +.+.++..+..+.+.+.
T Consensus 23 ~lv~~li~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g------vi~Gvg~~~t~~ai~la~~A~~~ 89 (286)
T 2r91_A 23 NHVKNITSKGVDVVFVAGTTGLG-------PALSLQEKMELTDAATSAARR------VIVQVASLNADEAIALAKYAESR 89 (286)
T ss_dssp HHHHHHHHTTCCEEEETSTTTTG-------GGSCHHHHHHHHHHHHHHCSS------EEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC------EEEeeCCCCHHHHHHHHHHHHhc
Confidence 56677778899998653222211 124778888888888774444 88999 56788888999999999
Q ss_pred CCCEEeeecccCCCCCcccccCCCCHHH-HHHHHHHHHhcCcc
Q 018731 276 DVDILTLGQYLQPTPLHLTVKEYVTPEK-FDFWKAYGESIGFR 317 (351)
Q Consensus 276 g~d~i~i~~~l~PTp~~~~~~~~v~~~e-~~~~~~~~~~~G~~ 317 (351)
|+|.+.+. +|.+.. ..+.++ +..++++++..+..
T Consensus 90 Gadavlv~-----~P~y~~---~~s~~~l~~~f~~va~a~~lP 124 (286)
T 2r91_A 90 GAEAVASL-----PPYYFP---RLSERQIAKYFRDLCSAVSIP 124 (286)
T ss_dssp TCSEEEEC-----CSCSST---TCCHHHHHHHHHHHHHHCSSC
T ss_pred CCCEEEEc-----CCcCCC---CCCHHHHHHHHHHHHHhcCCC
Confidence 99987662 233311 023444 44566677765543
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=90.76 E-value=4.7 Score=39.34 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchh
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ie 215 (351)
..+.++.+.+.|++.|.+....+. ...+.+.++.+++.+|++.|-+- ...+.+.++.+.++|+|.|.++.-
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~i~~ir~~~p~~~Vi~g---~v~t~e~a~~l~~aGaD~I~Vg~g 302 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSHGH------SEGVLQRIRETRAAYPHLEIIGG---NVATAEGARALIEAGVSAVKVGIG 302 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTCCEEEE---EECSHHHHHHHHHHTCSEEEECSS
T ss_pred hHHHHHHHHhccCceEEecccccc------chHHHHHHHHHHHHCCCceEEEc---ccCcHHHHHHHHHhCCCEEEECCC
Confidence 355677777889999999766541 26788999999998887665431 123788999999999999976421
Q ss_pred ch----HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 216 TV----KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 216 s~----~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.. .+...... ...+.-+.+..+.+++ .++.+ |..- -.+.+|+.+.+ .+|++.+.++..+
T Consensus 303 ~Gs~~~tr~~~g~g--~p~~~~i~~v~~~~~~--~~iPV----Ia~GGI~~~~di~kal----a~GAd~V~iGs~f 366 (496)
T 4fxs_A 303 PGSICTTRIVTGVG--VPQITAIADAAGVANE--YGIPV----IADGGIRFSGDISKAI----AAGASCVMVGSMF 366 (496)
T ss_dssp CCTTBCHHHHHCCC--CCHHHHHHHHHHHHGG--GTCCE----EEESCCCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCcCcccccccCCC--ccHHHHHHHHHHHhcc--CCCeE----EEeCCCCCHHHHHHHH----HcCCCeEEecHHH
Confidence 11 11111111 2244444555555555 56653 3311 24677777664 3699998887554
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.76 E-value=3.5 Score=37.72 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=57.6
Q ss_pred CCCcEEEEeec---CCCCCH----HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 180 KPDIMVECLTS---DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 180 ~p~i~i~~~~~---~~~~~~----e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
+.++...+.|| ++.+|. ..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..
T Consensus 25 ~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~-------~~Ls~~Er~~v~~~~v~~~~g---rv 94 (315)
T 3na8_A 25 IHGIIGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEG-------AYLSDPEWDEVVDFTLKTVAH---RV 94 (315)
T ss_dssp CCEEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SS
T ss_pred cCceEEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CC
Confidence 34444333343 344453 56667778899987654222221 123667777777776653333 24
Q ss_pred eeeeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 253 ~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
-+|+|. +.+.++..+..+.+.++|+|.+.+
T Consensus 95 pViaGvg~~~t~~ai~la~~A~~~Gadavlv 125 (315)
T 3na8_A 95 PTIVSVSDLTTAKTVRRAQFAESLGAEAVMV 125 (315)
T ss_dssp CBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 467788 467788888888888899887666
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.72 E-value=9.3 Score=37.13 Aligned_cols=133 Identities=20% Similarity=0.204 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+..+.++.+.+.|++.|.+....+ . ...+.+.++.+++.+|++.+-+- ...+.+.++.+.++|+|.|.++.
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g--~----~~~~~~~v~~i~~~~p~~~Vi~g---~v~t~e~a~~l~~aGaD~I~vg~ 299 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHG--H----SKGVIERVRWVKQTFPDVQVIGG---NIATAEAAKALAEAGADAVKVGI 299 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCC--S----BHHHHHHHHHHHHHCTTSEEEEE---EECSHHHHHHHHHTTCSEEEECS
T ss_pred chHHHHHHHhhcccceEEecccCC--c----chhHHHHHHHHHHHCCCceEEEe---eeCcHHHHHHHHHcCCCEEEECC
Confidence 445667778888999999876553 1 26788999999998888765441 12378999999999999998754
Q ss_pred hchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCC-CCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg-Et~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
..... -.+...+-+ ..+.-..+..+.+++ .++.+ |..=| .+.+|+.+.+. +|++.+.++..+
T Consensus 300 g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~--~~iPV----Ia~GGI~~~~di~kal~----~GAd~V~vGs~~ 364 (490)
T 4avf_A 300 GPGSICTTRIVAGVGVPQISAIANVAAALEG--TGVPL----IADGGIRFSGDLAKAMV----AGAYCVMMGSMF 364 (490)
T ss_dssp SCSTTCHHHHHTCBCCCHHHHHHHHHHHHTT--TTCCE----EEESCCCSHHHHHHHHH----HTCSEEEECTTT
T ss_pred CCCcCCCccccCCCCccHHHHHHHHHHHhcc--CCCcE----EEeCCCCCHHHHHHHHH----cCCCeeeecHHH
Confidence 22211 111111111 244444444444444 56653 22112 46778777654 599998887554
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=90.62 E-value=4 Score=36.84 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCCCCH----HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHH
Q 018731 191 DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDL 265 (351)
Q Consensus 191 ~~~~~~----e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~ 265 (351)
++.+|. ..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| +|+|. +.+.++.
T Consensus 14 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~eEr~~v~~~~~~~~~g------viaGvg~~~t~~a 80 (293)
T 1w3i_A 14 DNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLG-------PSLSPEEKLENLKAVYDVTNK------IIFQVGGLNLDDA 80 (293)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHTTCSC------EEEECCCSCHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHcCC------EEEecCCCCHHHH
Confidence 444554 56677778899988653222211 134778888888888874344 88999 5678888
Q ss_pred HHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHH-HHHHHHHHHhcCcc
Q 018731 266 KEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEK-FDFWKAYGESIGFR 317 (351)
Q Consensus 266 ~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e-~~~~~~~~~~~G~~ 317 (351)
.+..+.+.+.|+|.+.+. +|.+.. ..+.++ +..++++++..+..
T Consensus 81 i~la~~A~~~Gadavlv~-----~P~y~~---~~s~~~l~~~f~~va~a~~lP 125 (293)
T 1w3i_A 81 IRLAKLSKDFDIVGIASY-----APYYYP---RMSEKHLVKYFKTLCEVSPHP 125 (293)
T ss_dssp HHHHHHGGGSCCSEEEEE-----CCCSCS---SCCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHhcCCCEEEEc-----CCCCCC---CCCHHHHHHHHHHHHhhCCCC
Confidence 899999999999987663 233311 023443 44566777765543
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=90.35 E-value=4.1 Score=36.67 Aligned_cols=106 Identities=10% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCCCCH----HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHH
Q 018731 191 DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDL 265 (351)
Q Consensus 191 ~~~~~~----e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~ 265 (351)
++.+|. ..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| +|+|. +.+.++.
T Consensus 14 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~g------ViaGvg~~~t~~a 80 (288)
T 2nuw_A 14 QGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLG-------PALSKDEKRQNLNALYDVTHK------LIFQVGSLNLNDV 80 (288)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTG-------GGSCHHHHHHHHHHHTTTCSC------EEEECCCSCHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC------eEEeeCCCCHHHH
Confidence 444554 56677788899998653222211 134788888888888874344 88999 5678888
Q ss_pred HHHHHHHHhCCCCEEeeecccCCCCCcccccCCCCHHH-HHHHHHHHHhcCcc
Q 018731 266 KEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEK-FDFWKAYGESIGFR 317 (351)
Q Consensus 266 ~~~l~~l~~lg~d~i~i~~~l~PTp~~~~~~~~v~~~e-~~~~~~~~~~~G~~ 317 (351)
.+..+.+.+.|+|.+.+. +|.+.. ..+.++ +..++++++..+..
T Consensus 81 i~la~~A~~~Gadavlv~-----~P~y~~---~~s~~~l~~~f~~va~a~~lP 125 (288)
T 2nuw_A 81 MELVKFSNEMDILGVSSH-----SPYYFP---RLPEKFLAKYYEEIARISSHS 125 (288)
T ss_dssp HHHHHHHHTSCCSEEEEC-----CCCSSC---SCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHhcCCCEEEEc-----CCcCCC---CCCHHHHHHHHHHHHHhcCCC
Confidence 899999999999987662 233311 024444 44567777765543
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=90.05 E-value=9 Score=33.70 Aligned_cols=129 Identities=14% Similarity=0.062 Sum_probs=89.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCC--------CCCHHHHHHHH
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF--------RGDLRAVETLV 203 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~--------~~~~e~l~~L~ 203 (351)
.+....+.++.. ..-++.+-|.+|+...++ .+.+.+.++..+++ ++.+.. .+. -.-++.++..+
T Consensus 24 g~~~~~d~Le~~-g~yID~lKfg~Gt~~l~~---~~~l~eki~l~~~~--gV~v~~--GGTl~E~~~~qg~~~~yl~~~k 95 (251)
T 1qwg_A 24 PPKFVEDYLKVC-GDYIDFVKFGWGTSAVID---RDVVKEKINYYKDW--GIKVYP--GGTLFEYAYSKGKFDEFLNECE 95 (251)
T ss_dssp CHHHHHHHHHHH-GGGCSEEEECTTGGGGSC---HHHHHHHHHHHHTT--TCEEEE--CHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHh-hhhcceEEecCceeeecC---HHHHHHHHHHHHHc--CCeEEC--CcHHHHHHHHcCcHHHHHHHHH
Confidence 344444444332 233889999988854334 35688889888886 555532 110 02368999999
Q ss_pred HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-------CCCHHHHHHHHHHHHhCC
Q 018731 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-------GESDDDLKEAMADLRSID 276 (351)
Q Consensus 204 ~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-------gEt~e~~~~~l~~l~~lg 276 (351)
+.|++.|-++--+. .-+.+++.+.|+.+++ .|+.+.+-+ |- -.+.+++.+.++.-.+.|
T Consensus 96 ~lGf~~iEiS~G~i----------~l~~~~~~~~I~~~~~--~G~~v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeAG 161 (251)
T 1qwg_A 96 KLGFEAVEISDGSS----------DISLEERNNAIKRAKD--NGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAG 161 (251)
T ss_dssp HHTCCEEEECCSSS----------CCCHHHHHHHHHHHHH--TTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEECCCcc----------cCCHHHHHHHHHHHHH--CCCEEeeec--cccCCcccCCCCHHHHHHHHHHHHHCC
Confidence 99999996652221 3477888999999999 999875543 43 256788899888888999
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
++.|-+
T Consensus 162 A~~Vii 167 (251)
T 1qwg_A 162 ADYVII 167 (251)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 999887
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=89.97 E-value=3 Score=40.96 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+..+.++.+.+.|++-|++-..+. ..+...+.++.|++.+|++.|-+-. . .+.+..+.|.++|.|.|-+++
T Consensus 281 d~~eR~~aLv~AGvD~iviD~ahG------hs~~v~~~i~~ik~~~p~~~viaGN--V-aT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 281 GDKDRLKLLAEAGLDVVVLDSSQG------NSVYQIEFIKWIKQTYPKIDVIAGN--V-VTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCC------CSHHHHHHHHHHHHHCTTSEEEEEE--E-CSHHHHHHHHHHTCSEEEECS
T ss_pred cHHHHHHHHHhcCCcEEEEecccc------ccHHHHHHHHHHHhhCCcceEEecc--c-cCHHHHHHHHHcCCCEEeecC
Confidence 456677888899999999855443 1378999999999999998765421 2 388999999999999998776
Q ss_pred hchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 215 ETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 215 es~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
=...- ..+.+.+-+ ...--+++..+.+++ .|+.+-++-=+ .+.-|+.+.+ ..|.|.|.++.+|
T Consensus 352 GpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~--~~vpvIADGGI---~~sGDi~KAl----aaGAd~VMlGsll 416 (556)
T 4af0_A 352 GSGSICITQEVMAVGRPQGTAVYAVAEFASR--FGIPCIADGGI---GNIGHIAKAL----ALGASAVMMGGLL 416 (556)
T ss_dssp SCSTTBCCTTTCCSCCCHHHHHHHHHHHHGG--GTCCEEEESCC---CSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHHH--cCCCEEecCCc---CcchHHHHHh----hcCCCEEEEchhh
Confidence 54332 123332111 234456666677777 78776554311 3555665554 5899999998666
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=89.61 E-value=0.49 Score=41.44 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.++.+.+.|++.+.+..-+...... ..+ ++++.+++.. ++.+.+ .++..+++.++.+.++|+|.|.++.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~-~ipv~v--~ggI~~~~~~~~~l~~Gad~V~lg~ 105 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAM-DIKVEL--SGGIRDDDTLAAALATGCTRVNLGT 105 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHC-SSEEEE--ESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhc-CCcEEE--ECCcCCHHHHHHHHHcCCCEEEECc
Confidence 66777888888999999885422100011 123 7888888764 556544 5566688899999999999999886
Q ss_pred hch
Q 018731 215 ETV 217 (351)
Q Consensus 215 es~ 217 (351)
+..
T Consensus 106 ~~l 108 (244)
T 1vzw_A 106 AAL 108 (244)
T ss_dssp HHH
T ss_pred hHh
Confidence 654
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=89.55 E-value=3.8 Score=37.18 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccC--CC--CCC-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVD--RD--DIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~--~~--~l~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+.+++.+.+++..+.|..-|-+.|.. |. ..+ ..+.+++..+++.+++.. ++.|.+=| .+.+.++.-.++|
T Consensus 61 ~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT----~~~~V~~aAl~aG 135 (297)
T 1tx2_A 61 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDT----YKAEVAKQAIEAG 135 (297)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEEC----SCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeC----CCHHHHHHHHHcC
Confidence 45778888888899999999887532 11 111 122445666668887653 44454322 2678888888888
Q ss_pred CCeeec-chhc-hHHHHhh---h---------cC-CCC------CHHHHHHHHHHHHHhCCCCe---EEEeeeeeCCCCH
Q 018731 207 LDVFAH-NIET-VKRLQRI---V---------RD-PRA------GYEQSLEVLKHAKLSKKGLI---TKSSIMLGLGESD 262 (351)
Q Consensus 207 ~~~i~~-~ies-~~~~~~~---~---------r~-~~~------~~~~~l~~i~~~~~~~~Gi~---v~~~~IvGlgEt~ 262 (351)
.+.|+- +.+. .+++.+. . ++ |.+ -.+...+.++.+.+ .|+. +-.|--+|+|.+.
T Consensus 136 a~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~--~GI~~~~IilDPg~Gfgk~~ 213 (297)
T 1tx2_A 136 AHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKD--AGVRDENIILDPGIGFAKTP 213 (297)
T ss_dssp CCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHH--TTCCGGGEEEECCTTSSCCH
T ss_pred CCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHH--cCCChhcEEEeCCCCcCCCH
Confidence 888752 2222 1122110 0 00 110 02344555666777 8886 6777667778888
Q ss_pred HHHHHHHHHHHhC
Q 018731 263 DDLKEAMADLRSI 275 (351)
Q Consensus 263 e~~~~~l~~l~~l 275 (351)
++-.++++.+.++
T Consensus 214 ~~n~~ll~~l~~l 226 (297)
T 1tx2_A 214 EQNLEAMRNLEQL 226 (297)
T ss_dssp HHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHH
Confidence 8666666666554
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=89.45 E-value=2.6 Score=37.28 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=73.9
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCC--CCC-HHHHHHHHHcCCCeeec
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF--RGD-LRAVETLVHSGLDVFAH 212 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~--~~~-~e~l~~L~~aG~~~i~~ 212 (351)
+.+.++.+.+.|++.|+|.--+++--- +.+...++++... ++.++. .-.| ..+ .+.++.|.+.|+++|.-
T Consensus 75 M~~Di~~~~~~GadGvV~G~Lt~dg~i--D~~~~~~Li~~a~----~~~vTF-HRAfD~~~d~~~ale~L~~lG~~rILT 147 (256)
T 1twd_A 75 ILEDVRTVRELGFPGLVTGVLDVDGNV--DMPRMEKIMAAAG----PLAVTF-HRAFDMCANPLYTLNNLAELGIARVLT 147 (256)
T ss_dssp HHHHHHHHHHTTCSEEEECCBCTTSSB--CHHHHHHHHHHHT----TSEEEE-CGGGGGCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeeECCCCCc--CHHHHHHHHHHhC----CCcEEE-ECchhccCCHHHHHHHHHHcCCCEEEC
Confidence 456677788999999999554432222 2567777776554 334432 2212 223 47899999999999842
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+ +...+..+-+..|+.+.+. ++ ...+|.|=|=+.+.+.+.+ +.|++.++++
T Consensus 148 S------------G~~~~a~~g~~~L~~Lv~~-a~---~i~Im~GgGv~~~Ni~~l~----~tGv~e~H~S 198 (256)
T 1twd_A 148 S------------GQKSDALQGLSKIMELIAH-RD---APIIMAGAGVRAENLHHFL----DAGVLEVHSS 198 (256)
T ss_dssp C------------TTSSSTTTTHHHHHHHHTS-SS---CCEEEEESSCCTTTHHHHH----HHTCSEEEEC
T ss_pred C------------CCCCCHHHHHHHHHHHHHh-hC---CcEEEecCCcCHHHHHHHH----HcCCCeEeEC
Confidence 1 0112333445556565542 34 4668888877777766542 5788888864
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=0.44 Score=41.65 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++.+.++.+.+.|++.+.+..-+...-.. ..+ +.++.+++.. ++.+.+ .++..+++.++.+.++|+|.|.++.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~-~ipv~v--~ggi~~~~~~~~~l~~Gad~V~lg~ 104 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG---SNH-ELLAEVVGKL-DVQVEL--SGGIRDDESLAAALATGCARVNVGT 104 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSC---CCH-HHHHHHHHHC-SSEEEE--ESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCC---ChH-HHHHHHHHhc-CCcEEE--ECCCCCHHHHHHHHHcCCCEEEECc
Confidence 66778888888999999885422110111 124 7888888764 556544 5566688899999999999999886
Q ss_pred hch
Q 018731 215 ETV 217 (351)
Q Consensus 215 es~ 217 (351)
+..
T Consensus 105 ~~l 107 (244)
T 2y88_A 105 AAL 107 (244)
T ss_dssp HHH
T ss_pred hHh
Confidence 554
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=11 Score=33.58 Aligned_cols=118 Identities=13% Similarity=0.172 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+.+.++.+.+.|+..|.+..-+. + +.--.+.++.+++.. ++.+- .-++..++..++..+++|.|.|.++.
T Consensus 73 ~p~~~A~~y~~~GA~~isvltd~~--~----f~Gs~~~l~~ir~~v-~lPvl--~kdfiid~~qv~~A~~~GAD~VlLi~ 143 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVTEQR--R----FQGSLDDLDAVRASV-SIPVL--RKDFVVQPYQIHEARAHGADMLLLIV 143 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCGG--G----HHHHHHHHHHHHHHC-SSCEE--EESCCCSHHHHHHHHHTTCSEEEEEG
T ss_pred CHHHHHHHHHHcCCCEEEEecChh--h----cCCCHHHHHHHHHhC-CCCEE--ECccccCHHHHHHHHHcCCCEEEEec
Confidence 567788888899999997643221 2 122334566666653 45543 35677788889999999999998764
Q ss_pred hchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 215 es~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
..+ +.++..+.++.+++ .|+.+- +. -.|.+++... .++|++.+.+++
T Consensus 144 a~l------------~~~~l~~l~~~a~~--lGl~~l----ve-v~t~ee~~~A----~~~Gad~IGv~~ 190 (272)
T 3qja_A 144 AAL------------EQSVLVSMLDRTES--LGMTAL----VE-VHTEQEADRA----LKAGAKVIGVNA 190 (272)
T ss_dssp GGS------------CHHHHHHHHHHHHH--TTCEEE----EE-ESSHHHHHHH----HHHTCSEEEEES
T ss_pred ccC------------CHHHHHHHHHHHHH--CCCcEE----EE-cCCHHHHHHH----HHCCCCEEEECC
Confidence 332 23344455667777 788742 22 2466665443 356999998853
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.92 E-value=11 Score=32.61 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=74.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++..+.++.+.+.|++-|-++--+ ..-.+.++.+++.+|++.+.+-+ .++.+.++...++|.|.+
T Consensus 26 ~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~~l~vgaGt---vl~~d~~~~A~~aGAd~v 93 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLSVAEITFRS---------EAAADAIRLLRANRPDFLIAAGT---VLTAEQVVLAKSSGADFV 93 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCTTCEEEEES---CCSHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC---------chHHHHHHHHHHhCcCcEEeeCc---EeeHHHHHHHHHCCCCEE
Confidence 356788889999999999988886321 12356778888888887766533 247899999999999988
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..+ ..+ .+.++.+++ .|.. +|+| -.|.+++.+ +.+.|+|.+.+|
T Consensus 94 ~~p--------------~~d----~~v~~~ar~--~g~~----~i~G-v~t~~e~~~----A~~~Gad~vk~F 137 (224)
T 1vhc_A 94 VTP--------------GLN----PKIVKLCQD--LNFP----ITPG-VNNPMAIEI----ALEMGISAVKFF 137 (224)
T ss_dssp ECS--------------SCC----HHHHHHHHH--TTCC----EECE-ECSHHHHHH----HHHTTCCEEEET
T ss_pred EEC--------------CCC----HHHHHHHHH--hCCC----EEec-cCCHHHHHH----HHHCCCCEEEEe
Confidence 432 112 234445555 5654 3445 346666544 346788888774
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.55 E-value=3.4 Score=37.76 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=62.4
Q ss_pred HHHhCCCcEEEEee---c-CCCCCH----HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 018731 176 MKKQKPDIMVECLT---S-DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (351)
Q Consensus 176 ik~~~p~i~i~~~~---~-~~~~~~----e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~G 247 (351)
++..+.++.....| . ++.+|. ..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...|
T Consensus 8 ~~~~~~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~v~~~~g 80 (316)
T 3e96_A 8 LAKALETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEF-------YALSLEEAKEEVRRTVEYVHG 80 (316)
T ss_dssp HHHHTSSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCc-------ccCCHHHHHHHHHHHHHHhCC
Confidence 34444465433333 3 444564 56777888899998764323221 123677778888777664333
Q ss_pred CeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 248 LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 248 i~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
..-+|+|.|.+.++..+..+.+.++|+|.+.+
T Consensus 81 ---rvpViaGvg~~t~~ai~la~~A~~~Gadavlv 112 (316)
T 3e96_A 81 ---RALVVAGIGYATSTAIELGNAAKAAGADAVMI 112 (316)
T ss_dssp ---SSEEEEEECSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred ---CCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 23467777558888899999999999998776
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=88.42 E-value=2.1 Score=38.38 Aligned_cols=52 Identities=6% Similarity=0.086 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHH--HHHHHHHHHHhCCCCEEee
Q 018731 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDD--DLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e--~~~~~l~~l~~lg~d~i~i 282 (351)
+.+.++.++.++.+++.+..+.+- +| |+-.... -+.+.++.+.+.|+|.+-+
T Consensus 78 G~~~~~~~~~v~~~r~~~~~~Piv--lm-~Y~n~v~~~g~~~f~~~~~~aGvdGvIi 131 (271)
T 3nav_A 78 KTTPDICFELIAQIRARNPETPIG--LL-MYANLVYARGIDDFYQRCQKAGVDSVLI 131 (271)
T ss_dssp TCCHHHHHHHHHHHHHHCTTSCEE--EE-ECHHHHHHTCHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEE--EE-ecCcHHHHHhHHHHHHHHHHCCCCEEEE
Confidence 456677777777776522233321 11 1100000 1244555666667766555
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.37 E-value=2.4 Score=36.89 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=81.7
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.....+.++.+.+.|++.+.+---+.+..++ ...-.++++.+++... .+.+...+.+ .++.++.++++|.|.+
T Consensus 15 D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~--~~~g~~~v~~lr~~~~~~~~vhlmv~d---p~~~i~~~~~aGadgv 89 (230)
T 1tqj_A 15 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN--ITIGPLIVDAIRPLTKKTLDVHLMIVE---PEKYVEDFAKAGADII 89 (230)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC--BCBCHHHHHHHGGGCCSEEEEEEESSS---GGGTHHHHHHHTCSEE
T ss_pred CHhHHHHHHHHHHHcCCCEEEEEEEecCCCcc--hhhhHHHHHHHHhhcCCcEEEEEEccC---HHHHHHHHHHcCCCEE
Confidence 45567778888888899976542212111221 1122377888887641 2334444432 2357899999999999
Q ss_pred ecchh--chHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 018731 211 AHNIE--TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (351)
Q Consensus 211 ~~~ie--s~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~P 288 (351)
.+..| +.+ . ..+.++.+++ .|+.+...+ . ..|..+.. +.+.+ ++|.+.++. ..|
T Consensus 90 ~vh~e~~~~~-----------~---~~~~~~~i~~--~g~~~gv~~--~-p~t~~e~~---~~~~~-~~D~v~~ms-v~p 145 (230)
T 1tqj_A 90 SVHVEHNASP-----------H---LHRTLCQIRE--LGKKAGAVL--N-PSTPLDFL---EYVLP-VCDLILIMS-VNP 145 (230)
T ss_dssp EEECSTTTCT-----------T---HHHHHHHHHH--TTCEEEEEE--C-TTCCGGGG---TTTGG-GCSEEEEES-SCC
T ss_pred EECcccccch-----------h---HHHHHHHHHH--cCCcEEEEE--e-CCCcHHHH---HHHHh-cCCEEEEEE-ecc
Confidence 88766 321 1 2345566777 888643332 2 23443332 22222 678887753 357
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHhcC
Q 018731 289 TPLHLTVKEYVTPEKFDFWKAYGESIG 315 (351)
Q Consensus 289 Tp~~~~~~~~v~~~e~~~~~~~~~~~G 315 (351)
+.... .......+.+.++++.....|
T Consensus 146 g~ggq-~~~~~~~~~i~~lr~~~~~~~ 171 (230)
T 1tqj_A 146 GFGGQ-SFIPEVLPKIRALRQMCDERG 171 (230)
T ss_dssp ----C-CCCGGGHHHHHHHHHHHHHHT
T ss_pred ccCCc-cCcHHHHHHHHHHHHHHHhcC
Confidence 32221 112223445556666654333
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=88.25 E-value=6.9 Score=35.48 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 41 ~lv~~li~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~st~~ai~la~~A~~~ 110 (304)
T 3cpr_A 41 EVAAYLVDKGLDSLVLAGTTGES-------PTTTAAEKLELLKAVREEVGD---RAKLIAGVGTNNTRTSVELAEAAASA 110 (304)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTT-------TTSCHHHHHHHHHHHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEecCCCCCHHHHHHHHHHHHhc
Confidence 45566667788877543212111 123666666666666553233 13367777 45677777777888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 111 Gadavlv 117 (304)
T 3cpr_A 111 GADGLLV 117 (304)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8886655
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=88.25 E-value=1.9 Score=38.55 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecCC---CCCHHHHHHHHHcCCCeeecchhchH---------HH-HhhhcCCCCCHHHH
Q 018731 168 HFARTVKAMKKQKPDIMVECLTSDF---RGDLRAVETLVHSGLDVFAHNIETVK---------RL-QRIVRDPRAGYEQS 234 (351)
Q Consensus 168 ~~~~li~~ik~~~p~i~i~~~~~~~---~~~~e~l~~L~~aG~~~i~~~ies~~---------~~-~~~~r~~~~~~~~~ 234 (351)
++.+.++.+++.....-+...+.+. ..+.+.++.|.++|+|.|.+++.-.| .. .+.+. .+.+.++.
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~-~G~~~~~~ 82 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLA-AGTTSSDC 82 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHH-TTCCHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHHH
Confidence 4555555555543222222222221 11245666677777777766632111 11 12222 25677777
Q ss_pred HHHHHHHHHhCCCCeEEEeeeeeCCCCH-H--HHHHHHHHHHhCCCCEEee
Q 018731 235 LEVLKHAKLSKKGLITKSSIMLGLGESD-D--DLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 235 l~~i~~~~~~~~Gi~v~~~~IvGlgEt~-e--~~~~~l~~l~~lg~d~i~i 282 (351)
++.++.+++.+..+.+ .+| |+ .+. . -+.+.++.+.+.|+|.+-+
T Consensus 83 ~~~v~~ir~~~~~~Pi--vlm-~Y-~npv~~~g~e~f~~~~~~aGvdgvii 129 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPI--GLL-LY-ANLVFANGIDEFYTKAQAAGVDSVLI 129 (267)
T ss_dssp HHHHHHHHHHCTTCCE--EEE-EC-HHHHHHHCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCCCE--EEE-ec-CcHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 7887777762223331 111 11 011 0 1245566666777777666
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.20 E-value=6.3 Score=35.58 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 32 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 101 (297)
T 3flu_A 32 DLIDWHIENGTDGIVAVGTTGES-------ATLSVEEHTAVIEAVVKHVAK---RVPVIAGTGANNTVEAIALSQAAEKA 101 (297)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEeCccccCc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHc
Confidence 45666777888887653222211 123666777777766653333 24467788 46777888888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 102 Gadavlv 108 (297)
T 3flu_A 102 GADYTLS 108 (297)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887665
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=87.96 E-value=14 Score=32.90 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
..+.+.++.+.+.|+..|.+.. ++. +..+..+++ +.+++.. ++.| +.-+|..++..+...+.+|.|.|.+.
T Consensus 79 ~dp~~~A~~y~~~GA~~IsVlt-d~~-~f~Gs~~~L----~~ir~~v-~lPV--l~Kdfi~d~~qi~ea~~~GAD~VlLi 149 (272)
T 3tsm_A 79 FDPPALAKAYEEGGAACLSVLT-DTP-SFQGAPEFL----TAARQAC-SLPA--LRKDFLFDPYQVYEARSWGADCILII 149 (272)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEC-CST-TTCCCHHHH----HHHHHTS-SSCE--EEESCCCSTHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEec-ccc-ccCCCHHHH----HHHHHhc-CCCE--EECCccCCHHHHHHHHHcCCCEEEEc
Confidence 3567788888899999996643 222 333344433 4555542 4444 34578788889999999999999775
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
...+ +.++..+.++.+++ .|+.+-..+ .|.+|+ +.+.++|++.+.++
T Consensus 150 ~a~L------------~~~~l~~l~~~a~~--lGl~~lvev-----h~~eEl----~~A~~~ga~iIGin 196 (272)
T 3tsm_A 150 MASV------------DDDLAKELEDTAFA--LGMDALIEV-----HDEAEM----ERALKLSSRLLGVN 196 (272)
T ss_dssp TTTS------------CHHHHHHHHHHHHH--TTCEEEEEE-----CSHHHH----HHHTTSCCSEEEEE
T ss_pred cccc------------CHHHHHHHHHHHHH--cCCeEEEEe-----CCHHHH----HHHHhcCCCEEEEC
Confidence 4221 33455566677888 888643332 466665 34457899999985
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=6.5 Score=35.59 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~ 106 (301)
T 1xky_A 37 KLVNYLIDNGTTAIVVGGTTGES-------PTLTSEEKVALYRHVVSVVDK---RVPVIAGTGSNNTHASIDLTKKATEV 106 (301)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CceEEeCCCCCCHHHHHHHHHHHHhc
Confidence 45666677788887543222111 123566666666666553233 23467777 45677777778888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 107 Gadavlv 113 (301)
T 1xky_A 107 GVDAVML 113 (301)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8886655
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.57 E-value=6.5 Score=35.41 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~ 94 (294)
T 2ehh_A 25 NLIEFHVDNGTDAILVCGTTGES-------PTLTFEEHEKVIEFAVKRAAG---RIKVIAGTGGNATHEAVHLTAHAKEV 94 (294)
T ss_dssp HHHHHHHTTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 45555666777776542112111 123556666666665543233 23366777 44666677777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 95 Gadavlv 101 (294)
T 2ehh_A 95 GADGALV 101 (294)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 7776554
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=87.56 E-value=7.4 Score=35.47 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 48 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~v~~~~g---rvpViaGvg~~st~eai~la~~A~~~ 117 (314)
T 3qze_A 48 KLVDFHLQEGTNAIVAVGTTGES-------ATLDVEEHIQVIRRVVDQVKG---RIPVIAGTGANSTREAVALTEAAKSG 117 (314)
T ss_dssp HHHHHHHHHTCCEEEESSGGGTG-------GGCCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHc
Confidence 45666777888887653222221 123667777777766653333 24467788 55778888888888889
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 118 Gadavlv 124 (314)
T 3qze_A 118 GADACLL 124 (314)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9887665
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=87.48 E-value=6 Score=35.57 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~ 94 (289)
T 2yxg_A 25 ENINFLIENGVSGIVAVGTTGES-------PTLSHEEHKKVIEKVVDVVNG---RVQVIAGAGSNCTEEAIELSVFAEDV 94 (289)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45666677788877543212111 123566666666666553233 23467777 45667777777888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 95 Gadavlv 101 (289)
T 2yxg_A 95 GADAVLS 101 (289)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8886655
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.37 E-value=7.8 Score=34.83 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~ 94 (292)
T 2vc6_A 25 DLVEWQIEEGSFGLVPCGTTGES-------PTLSKSEHEQVVEITIKTANG---RVPVIAGAGSNSTAEAIAFVRHAQNA 94 (292)
T ss_dssp HHHHHHHHTTCSEEETTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHHc
Confidence 55666777788887653222211 123666666666666653233 23467777 45677777788888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 95 Gadavlv 101 (292)
T 2vc6_A 95 GADGVLI 101 (292)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=87.30 E-value=6.6 Score=35.83 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 47 ~li~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~v~~~~g---rvpViaGvg~~st~~ai~la~~A~~~ 116 (315)
T 3si9_A 47 NFVEWQITQGINGVSPVGTTGES-------PTLTHEEHKRIIELCVEQVAK---RVPVVAGAGSNSTSEAVELAKHAEKA 116 (315)
T ss_dssp HHHHHHHHTTCSEEECSSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEeCccccCc-------cccCHHHHHHHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45666677788877543222211 123566666666666553233 23467777 45677777777888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 117 Gadavlv 123 (315)
T 3si9_A 117 GADAVLV 123 (315)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8876655
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=87.09 E-value=11 Score=34.07 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...|- ..-+|+|. +.+.++..+..+.+.+.
T Consensus 32 ~lv~~li~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g~--rvpviaGvg~~~t~~ai~la~~a~~~ 102 (301)
T 3m5v_A 32 RLIKRQIENGIDAVVPVGTTGES-------ATLTHEEHRTCIEIAVETCKGT--KVKVLAGAGSNATHEAVGLAKFAKEH 102 (301)
T ss_dssp HHHHHHHHTTCCEEECSSTTTTG-------GGSCHHHHHHHHHHHHHHHTTS--SCEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCC--CCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 56666777888887653222211 1236667777777666533341 13467777 45777778888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 103 Gadavlv 109 (301)
T 3m5v_A 103 GADGILS 109 (301)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887665
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=2.1 Score=39.07 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=68.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCC-C---C--CcHHHHHHHHHHHHHhCCC-cEEEEe-ecCCC---CCH---
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDI-P---D--GGSGHFARTVKAMKKQKPD-IMVECL-TSDFR---GDL--- 196 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l-~---~--~~~~~~~~li~~ik~~~p~-i~i~~~-~~~~~---~~~--- 196 (351)
.+.+++.+.+..+.+.|++.|....|+++.. . + .++++-.+|++.|++...+ +.|.+. .|.+. .+.
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHH
Confidence 4678888888888999999998877776432 1 1 1255677888888876323 555432 23221 122
Q ss_pred -HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 197 -RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 197 -e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
+.++.=.++|.+.+. +..-++.+.+.+.++.+++ .|+. .-++.|+
T Consensus 163 ~~~Lk~Kv~aGAdf~i-------------TQ~ffD~~~~~~f~~~~r~--~Gi~--vPIi~GI 208 (310)
T 3apt_A 163 LRHFKAKVEAGLDFAI-------------TQLFFNNAHYFGFLERARR--AGIG--IPILPGI 208 (310)
T ss_dssp HHHHHHHHHHHCSEEE-------------ECCCSCHHHHHHHHHHHHH--TTCC--SCEECEE
T ss_pred HHHHHHHHHcCCCEEE-------------ecccCCHHHHHHHHHHHHH--cCCC--CeEEEEe
Confidence 233333467888651 1234677777777778877 7764 3445555
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=86.97 E-value=6.7 Score=35.42 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 25 ~lv~~li~~Gv~gi~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~ 94 (297)
T 2rfg_A 25 GLVDWQIKHGAHGLVPVGTTGES-------PTLTEEEHKRVVALVAEQAQG---RVPVIAGAGSNNPVEAVRYAQHAQQA 94 (297)
T ss_dssp HHHHHHHHTTCSEEECSSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEccCCCCHHHHHHHHHHHHhc
Confidence 55666777888887653222211 123666666777666653333 23467788 45777777888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 95 Gadavlv 101 (297)
T 2rfg_A 95 GADAVLC 101 (297)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887665
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.73 E-value=2.4 Score=38.44 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=79.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++++.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++..|++.+.+- +++.-+.......-.++|++.
T Consensus 156 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~----P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~ 231 (302)
T 2ftp_A 156 VDPRQVAWVARELQQMGCYEVSLGDTIGVGT----AGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAV 231 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEESSSCCC----HHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcC----HHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCE
Confidence 4678899999999999999999853322112 47889999999998776544432 333333455566667899999
Q ss_pred eecchhchHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 210 FAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 210 i~~~ies~~~--~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
|..++-.+-+ +-..-. .....++.+..++ . .|+.+ |-+.+.+.++.+++.+
T Consensus 232 vd~tv~GlG~cp~a~gr~-GN~~~E~lv~~l~---~--~g~~~--------~idl~~l~~~~~~~~~ 284 (302)
T 2ftp_A 232 FDSSVAGLGGCPYAKGAT-GNVASEDVLYLLN---G--LEIHT--------GVDMHALVDAGQRICA 284 (302)
T ss_dssp EEEBGGGCCBCGGGTTCB-CBCBHHHHHHHHH---H--TTCBC--------CCCHHHHHHHHHHHHH
T ss_pred EEecccccCCCCCCCCCC-CChhHHHHHHHHH---h--cCCCC--------CcCHHHHHHHHHHHHH
Confidence 9877655322 111001 1236677776655 3 45542 3456677777666654
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=86.69 E-value=7 Score=35.19 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 27 ~lv~~li~~Gv~gl~v~GttGE~-------~~Lt~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 96 (292)
T 3daq_A 27 AHVNFLLENNAQAIIVNGTTAES-------PTLTTDEKELILKTVIDLVDK---RVPVIAGTGTNDTEKSIQASIQAKAL 96 (292)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECcccccc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEeCCcccHHHHHHHHHHHHHc
Confidence 56666777888887653222221 123566666666666553222 23467777 46677777888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 97 Gadavlv 103 (292)
T 3daq_A 97 GADAIML 103 (292)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887665
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=8 Score=34.78 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=48.9
Q ss_pred HHHHHHHH-cCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh
Q 018731 197 RAVETLVH-SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (351)
Q Consensus 197 e~l~~L~~-aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~ 274 (351)
..++.+.+ +|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+
T Consensus 28 ~lv~~li~~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~ 97 (293)
T 1f6k_A 28 QIIRHNIDKMKVDGLYVGGSTGEN-------FMLSTEEKKEIFRIAKDEAKD---QIALIAQVGSVNLKEAVELGKYATE 97 (293)
T ss_dssp HHHHHHHHTSCCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCcEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEecCCCCHHHHHHHHHHHHh
Confidence 55666777 888887653222221 123666777777766653333 23467888 5577778888888888
Q ss_pred CCCCEEee
Q 018731 275 IDVDILTL 282 (351)
Q Consensus 275 lg~d~i~i 282 (351)
+|+|.+.+
T Consensus 98 ~Gadavlv 105 (293)
T 1f6k_A 98 LGYDCLSA 105 (293)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 88887665
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=86.52 E-value=7.5 Score=35.43 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg 276 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|.|.+.++..+..+.+.+.|
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~vi~~~~~~~~g---rvpViaGvg~st~~ai~la~~A~~~G 106 (314)
T 3d0c_A 37 DNVEFLLQNGIEVIVPNGNTGEF-------YALTIEEAKQVATRVTELVNG---RATVVAGIGYSVDTAIELGKSAIDSG 106 (314)
T ss_dssp HHHHHHHHTTCSEECTTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECcccCCh-------hhCCHHHHHHHHHHHHHHhCC---CCeEEecCCcCHHHHHHHHHHHHHcC
Confidence 56677888899998653222221 124677777777777653333 23477888338888889999999999
Q ss_pred CCEEeeecccCCCCCcccccCCCCHHH-HHHHHHHHHhcCc
Q 018731 277 VDILTLGQYLQPTPLHLTVKEYVTPEK-FDFWKAYGESIGF 316 (351)
Q Consensus 277 ~d~i~i~~~l~PTp~~~~~~~~v~~~e-~~~~~~~~~~~G~ 316 (351)
+|.+.+. +|.+.. .+.++ +..++++++..+.
T Consensus 107 adavlv~-----~P~y~~----~s~~~l~~~f~~va~a~~l 138 (314)
T 3d0c_A 107 ADCVMIH-----QPVHPY----ITDAGAVEYYRNIIEALDA 138 (314)
T ss_dssp CSEEEEC-----CCCCSC----CCHHHHHHHHHHHHHHSSS
T ss_pred CCEEEEC-----CCCCCC----CCHHHHHHHHHHHHHhCCC
Confidence 9987662 233311 23333 4456667766543
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=6.7 Score=34.10 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=80.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEE--eccC-CCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCC
Q 018731 132 DPMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGL 207 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~l--tgg~-~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~ 207 (351)
+...+.+.++.+ +.|++.+.+ -.|. .+.+.- + ..+++.+++.. ..+.++..+.+ .+..++.+.++|.
T Consensus 11 D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~-G----~~~v~~lr~~~~~~~dvhLmv~d---p~~~i~~~~~aGA 81 (231)
T 3ctl_A 11 DLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTL-S----PFFVSQVKKLATKPLDCHLMVTR---PQDYIAQLARAGA 81 (231)
T ss_dssp CGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCB-C----HHHHHHHHTTCCSCEEEEEESSC---GGGTHHHHHHHTC
T ss_pred ChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchh-c----HHHHHHHHhccCCcEEEEEEecC---HHHHHHHHHHcCC
Confidence 445667778787 888886533 3333 223331 2 35777888753 12345554432 2346899999999
Q ss_pred Ceeecchhc-hHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 208 DVFAHNIET-VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 208 ~~i~~~ies-~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
|.+.+..|+ .+ +. .+.++.+++ .|+++...+ ..+...+.+.+.+ + ++|.+-++ -.
T Consensus 82 d~itvh~Ea~~~-----------~~---~~~i~~i~~--~G~k~gv~l--np~tp~~~~~~~l----~-~~D~Vlvm-sV 137 (231)
T 3ctl_A 82 DFITLHPETING-----------QA---FRLIDEIRR--HDMKVGLIL--NPETPVEAMKYYI----H-KADKITVM-TV 137 (231)
T ss_dssp SEEEECGGGCTT-----------TH---HHHHHHHHH--TTCEEEEEE--CTTCCGGGGTTTG----G-GCSEEEEE-SS
T ss_pred CEEEECcccCCc-----------cH---HHHHHHHHH--cCCeEEEEE--ECCCcHHHHHHHH----h-cCCEEEEe-ee
Confidence 999987766 31 22 255667777 898754443 2232223322222 2 58888775 33
Q ss_pred CC-CCCcccccCCCCHHHHHHHHHHHHhc
Q 018731 287 QP-TPLHLTVKEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 287 ~P-Tp~~~~~~~~v~~~e~~~~~~~~~~~ 314 (351)
.| +..+ .......+...++++.....
T Consensus 138 ~pGfggQ--~f~~~~l~kI~~lr~~~~~~ 164 (231)
T 3ctl_A 138 DPGFAGQ--PFIPEMLDKLAELKAWRERE 164 (231)
T ss_dssp CTTCSSC--CCCTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCc--cccHHHHHHHHHHHHHHhcc
Confidence 56 3222 11112233445566555443
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=86.16 E-value=9.3 Score=34.68 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.++..+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 33 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~ 102 (309)
T 3fkr_A 33 RAVDFMIDAGSDGLCILANFSEQ-------FAITDDERDVLTRTILEHVAG---RVPVIVTTSHYSTQVCAARSLRAQQL 102 (309)
T ss_dssp HHHHHHHHTTCSCEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCCchHHHHHHHHHHHHHc
Confidence 44555556666665542112111 022455555555555442222 13355666 34555666666666666
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 103 Gadavlv 109 (309)
T 3fkr_A 103 GAAMVMA 109 (309)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 6665544
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=86.14 E-value=17 Score=33.04 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHh
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~ 274 (351)
...++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+
T Consensus 31 ~~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~ 100 (311)
T 3h5d_A 31 PALIEHLLAHHTDGILLAGTTAES-------PTLTHDEELELFAAVQKVVNG---RVPLIAGVGTNDTRDSIEFVKEVAE 100 (311)
T ss_dssp HHHHHHHHHTTCCCEEESSTTTTG-------GGSCHHHHHHHHHHHHHHSCS---SSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHh
Confidence 467777788888887653222211 123677777777777664333 24567777 4567777888888888
Q ss_pred CCC-CEEee
Q 018731 275 IDV-DILTL 282 (351)
Q Consensus 275 lg~-d~i~i 282 (351)
+|. |.+.+
T Consensus 101 ~Ga~davlv 109 (311)
T 3h5d_A 101 FGGFAAGLA 109 (311)
T ss_dssp SCCCSEEEE
T ss_pred cCCCcEEEE
Confidence 885 86655
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=86.11 E-value=6 Score=35.88 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 40 ~lv~~li~~Gv~gi~v~GttGE~-------~~Lt~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 109 (304)
T 3l21_A 40 RLANHLVDQGCDGLVVSGTTGES-------PTTTDGEKIELLRAVLEAVGD---RARVIAGAGTYDTAHSIRLAKACAAE 109 (304)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 56666777888887653222211 123666777777766653233 23467777 56777888888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 110 Gadavlv 116 (304)
T 3l21_A 110 GAHGLLV 116 (304)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887665
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=85.96 E-value=7.7 Score=34.87 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 26 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~ 95 (291)
T 3tak_A 26 KLVEWHIEQGTNSIVAVGTTGEA-------STLSMEEHTQVIKEIIRVANK---RIPIIAGTGANSTREAIELTKAAKDL 95 (291)
T ss_dssp HHHHHHHHHTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECcccccc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45666677788877543222211 123666777777666653233 24467777 45777777888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 96 Gadavlv 102 (291)
T 3tak_A 96 GADAALL 102 (291)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=85.94 E-value=16 Score=31.47 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=73.0
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.++..+.++++.+.|++-|-++--+ ..-.+.++.+++.+|++.+.+-+ . ++.+.++...++|.+.+.
T Consensus 36 ~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~~~~igagt--v-l~~d~~~~A~~aGAd~v~ 103 (225)
T 1mxs_A 36 REEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRPELCVGAGT--V-LDRSMFAAVEAAGAQFVV 103 (225)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCTTSEEEEEC--C-CSHHHHHHHHHHTCSSEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHhCcccEEeeCe--E-eeHHHHHHHHHCCCCEEE
Confidence 56778889999999999988886211 23456788888888887776543 2 478999999999999885
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
.+. .+ .+.++.+++ .|+. +|.| -.|.+++.+ ..+.|+|.+.+|
T Consensus 104 ~p~--------------~d----~~v~~~~~~--~g~~----~i~G-~~t~~e~~~----A~~~Gad~vk~F 146 (225)
T 1mxs_A 104 TPG--------------IT----EDILEAGVD--SEIP----LLPG-ISTPSEIMM----GYALGYRRFKLF 146 (225)
T ss_dssp CSS--------------CC----HHHHHHHHH--CSSC----EECE-ECSHHHHHH----HHTTTCCEEEET
T ss_pred eCC--------------CC----HHHHHHHHH--hCCC----EEEe-eCCHHHHHH----HHHCCCCEEEEc
Confidence 431 11 133344444 5543 3445 345555433 336777777763
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=85.81 E-value=26 Score=37.88 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=84.3
Q ss_pred CCchhHHHHHHHHHhC--CCcEEEEeccCC-----CCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec--CCCC-------
Q 018731 131 PDPMEPENTAKAIASW--GVDYIVLTSVDR-----DDIPDGGSGHFARTVKAMKKQKPDIMVECLTS--DFRG------- 194 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~--G~~~I~ltgg~~-----~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~~~~------- 194 (351)
++.++.+++++.+.+. |+..+-..||.. +.+.. .=.+.++.+++..|+..+.++.. +...
T Consensus 552 ~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e----~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~ 627 (1150)
T 3hbl_A 552 VRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKE----NPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDN 627 (1150)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCC----CHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCC----CHHHHHHHHHHhCCCCeEEEEeccccccccccCCch
Confidence 5567888888888887 999988877652 11221 22356677777778887766542 2110
Q ss_pred -CHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee---C------CCCHHH
Q 018731 195 -DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG---L------GESDDD 264 (351)
Q Consensus 195 -~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG---l------gEt~e~ 264 (351)
..+.++..+++|++.+.+.. +.++ .....+.++.+++ .|..+...+.+- + ..+.+.
T Consensus 628 v~~~~v~~a~~~Gvd~irif~-~~sd-----------~~~~~~~~~~~~e--~g~~~~~~i~~~~~~~~pe~~~~~~~~~ 693 (1150)
T 3hbl_A 628 VIHKFVQESAKAGIDVFRIFD-SLNW-----------VDQMKVANEAVQE--AGKISEGTICYTGDILNPERSNIYTLEY 693 (1150)
T ss_dssp HHHHHHHHHHHTTCCEEEEEC-TTCC-----------GGGGHHHHHHHHH--TTCEEEEEEECCSCTTCTTTCSSSSHHH
T ss_pred hHHHHHHHHHhCCcCEEEEEe-eCCH-----------HHHHHHHHHHHHH--HhhheeEEEeecccccChhhcCCCCHHH
Confidence 24568889999999986532 1122 1222344555666 676554444332 2 145677
Q ss_pred HHHHHHHHHhCCCCEEee
Q 018731 265 LKEAMADLRSIDVDILTL 282 (351)
Q Consensus 265 ~~~~l~~l~~lg~d~i~i 282 (351)
+.+.++.+.++|++.+.+
T Consensus 694 ~~~~a~~~~~~Ga~~i~l 711 (1150)
T 3hbl_A 694 YVKLAKELEREGFHILAI 711 (1150)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCeeeE
Confidence 888888888899888777
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=85.78 E-value=7 Score=35.47 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~vi~~~~~~~~g---rvpViaGvg~~st~~ai~la~~A~~~ 106 (306)
T 1o5k_A 37 RLVRYQLENGVNALIVLGTTGES-------PTVNEDEREKLVSRTLEIVDG---KIPVIVGAGTNSTEKTLKLVKQAEKL 106 (306)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTG-------GGCCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEcCCCccHHHHHHHHHHHHhc
Confidence 45566667788776543222211 123556666666666543223 23466777 45667777777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 107 Gadavlv 113 (306)
T 1o5k_A 107 GANGVLV 113 (306)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8776554
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.74 E-value=9.7 Score=34.28 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 28 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~ 97 (294)
T 3b4u_A 28 AHARRCLSNGCDSVTLFGTTGEG-------CSVGSRERQAILSSFIAAGIA---PSRIVTGVLVDSIEDAADQSAEALNA 97 (294)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHTTCC---GGGEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCccHHHHHHHHHHHHhc
Confidence 45556667777776543212111 123666667777766653222 23466777 44667777777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 98 Gadavlv 104 (294)
T 3b4u_A 98 GARNILL 104 (294)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 7776555
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=85.72 E-value=6.9 Score=36.20 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 56 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~vi~~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~ 125 (343)
T 2v9d_A 56 ALIDDLIKAGVDGLFFLGSGGEF-------SQLGAEERKAIARFAIDHVDR---RVPVLIGTGGTNARETIELSQHAQQA 125 (343)
T ss_dssp HHHHHHHHTTCSCEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 45555667777776543212111 123556666666666543233 23466777 45667777777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 126 Gadavlv 132 (343)
T 2v9d_A 126 GADGIVV 132 (343)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 7776555
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=85.64 E-value=4.4 Score=35.28 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++.+.+...+.. .. +.....++++.+++.. ++.+.+ .++..+.+.++.+.++|+|.+.+
T Consensus 29 ~~d~~~~a~~~~~~Gad~i~v~d~~~~-~~--~~~~~~~~i~~i~~~~-~ipvi~--~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 29 SGDPVELGKFYSEIGIDELVFLDITAS-VE--KRKTMLELVEKVAEQI-DIPFTV--GGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp TTCHHHHHHHHHHTTCCEEEEEESSCS-SS--HHHHHHHHHHHHHTTC-CSCEEE--ESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ccCHHHHHHHHHHcCCCEEEEECCchh-hc--CCcccHHHHHHHHHhC-CCCEEE--eCCCCCHHHHHHHHHcCCCEEEE
Confidence 346677788888999999988755431 11 2345667888888753 455543 45666889999999999999988
Q ss_pred chhch
Q 018731 213 NIETV 217 (351)
Q Consensus 213 ~ies~ 217 (351)
+-+..
T Consensus 103 g~~~l 107 (253)
T 1thf_D 103 NTAAV 107 (253)
T ss_dssp SHHHH
T ss_pred ChHHH
Confidence 75443
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=85.51 E-value=6.1 Score=35.55 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 26 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~ 95 (292)
T 2ojp_A 26 KLIDYHVASGTSAIVSVGTTGES-------ATLNHDEHADVVMMTLDLADG---RIPVIAGTGANATAEAISLTQRFNDS 95 (292)
T ss_dssp HHHHHHHHHTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHhc
Confidence 45555666677776542111111 022555666666655543223 13366677 44666666777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 96 Gadavlv 102 (292)
T 2ojp_A 96 GIVGCLT 102 (292)
T ss_dssp SCSEEEE
T ss_pred CCCEEEE
Confidence 7776544
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=4.2 Score=37.51 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=74.1
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+++.+.+.++.+.+.|+..|.|..-..-.. ...+.++++.+++..|++.+.+- +++.-+--.-.-.-.++|++.|
T Consensus 167 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~v 242 (337)
T 3ble_A 167 SPDYVKSLVEHLSKEHIERIFLPDTLGVLS----PEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGL 242 (337)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEEECTTCCCC----HHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCcC----HHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 467888999999999999999943222112 47899999999998877655442 3332223334444567899999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
...+-.+-. .. .....++.+..++.. .|+. . |-+.+.+.++.+++.+
T Consensus 243 d~tv~GlG~---~a--GN~~~E~lv~~L~~~----~g~~------t--gidl~~L~~~~~~v~~ 289 (337)
T 3ble_A 243 HASINGLGE---RA--GNTPLEALVTTIHDK----SNSK------T--NINEIAITEASRLVEV 289 (337)
T ss_dssp EEBGGGCSS---TT--CBCBHHHHHHHHHHH----SSCC------C--CCCGGGHHHHHHHHHH
T ss_pred EEecccccc---cc--cchhHHHHHHHHHHh----cCCC------C--CcCHHHHHHHHHHHHH
Confidence 655443221 11 124677777776542 2443 2 2344455555555554
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.29 E-value=7.1 Score=35.90 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 59 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~vi~~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~ 128 (332)
T 2r8w_A 59 ALIARLDAAEVDSVGILGSTGIY-------MYLTREERRRAIEAAATILRG---RRTLMAGIGALRTDEAVALAKDAEAA 128 (332)
T ss_dssp HHHHHHHHHTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 45666777788887643222211 123666666777666653333 23467777 45677777888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 129 Gadavlv 135 (332)
T 2r8w_A 129 GADALLL 135 (332)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=85.09 E-value=8.8 Score=34.74 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 36 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~ 105 (303)
T 2wkj_A 36 RLVQFNIQQGIDGLYVGGSTGEA-------FVQSLSEREQVLEIVAEEAKG---KIKLIAHVGCVSTAESQQLAASAKRY 105 (303)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---TSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECeeccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhC
Confidence 55666777888887653222211 123666777777766653233 23467788 45777778888888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 106 Gadavlv 112 (303)
T 2wkj_A 106 GFDAVSA 112 (303)
T ss_dssp TCSEEEE
T ss_pred CCCEEEe
Confidence 8887665
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=17 Score=31.00 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++..+.++.+.+.|++-|-++--+ + .-.+.++.+++.+|++.+..-+ .++.+.++...++|.|.+
T Consensus 25 ~~~~~~~~~~~al~~gGv~~iel~~k~----~-----~~~~~i~~l~~~~~~~~vgagt---vi~~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 25 KKLEHAVPMAKALVAGGVRVLNVTLRT----E-----CAVDAIRAIAKEVPEAIVGAGT---VLNPQQLAEVTEAGAQFA 92 (214)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEESCS----T-----THHHHHHHHHHHCTTSEEEEES---CCSHHHHHHHHHHTCSCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----h-----hHHHHHHHHHHHCcCCEEeeCE---EEEHHHHHHHHHcCCCEE
Confidence 356788889999999999988886321 1 2356788788878877665532 358899999999999988
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..+ ..+ .+.++.+++ .|+. ++.| -.|.+++.+. .+.|+|.+.+|
T Consensus 93 ~~p--------------~~d----~~v~~~~~~--~g~~----~i~G-~~t~~e~~~A----~~~Gad~v~~F 136 (214)
T 1wbh_A 93 ISP--------------GLT----EPLLKAATE--GTIP----LIPG-ISTVSELMLG----MDYGLKEFKFF 136 (214)
T ss_dssp EES--------------SCC----HHHHHHHHH--SSSC----EEEE-ESSHHHHHHH----HHTTCCEEEET
T ss_pred EcC--------------CCC----HHHHHHHHH--hCCC----EEEe-cCCHHHHHHH----HHCCCCEEEEe
Confidence 533 111 234445555 5643 4556 3566665443 46888888874
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=84.79 E-value=2.1 Score=37.38 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++.+.++..+...... ....++++.+++.. ++.+-+ .++..+.+.++.+.++|+|.+.++
T Consensus 35 ~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~---~~~~~~i~~i~~~~-~ipvi~--~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 35 ILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLT-TLPIIA--SGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEETTTTTCSS---CCCHHHHHHHGGGC-CSCEEE--ESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CCHHHHHHHHHHcCCCEEEEEecCcccCCC---cccHHHHHHHHHhC-CCCEEE--eCCCCCHHHHHHHHHcCCCeeehh
Confidence 456778888889999999998765321111 12346777787764 455543 556668899999999999999887
Q ss_pred hhch
Q 018731 214 IETV 217 (351)
Q Consensus 214 ies~ 217 (351)
-..+
T Consensus 109 ~~~l 112 (247)
T 3tdn_A 109 TAAV 112 (247)
T ss_dssp HHHH
T ss_pred hHHh
Confidence 5443
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=84.68 E-value=25 Score=32.56 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=82.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.+...+.+.++.+.|.+-|-++-. + +.-.+.+..|++.. ++.+- .|+..+...+..-.++|++.+
T Consensus 43 ~D~~atv~Qi~~l~~aG~diVRvavp------~---~~~a~al~~I~~~~-~vPlv---aDiHf~~~lal~a~e~G~dkl 109 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCEIVRVAVP------H---KEDVEALEEIVKKS-PMPVI---ADIHFAPSYAFLSMEKGVHGI 109 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCCEEEEECC------S---HHHHHHHHHHHHHC-SSCEE---EECCSCHHHHHHHHHTTCSEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCC------C---hHHHHHHHHHHhcC-CCCEE---EeCCCCHHHHHHHHHhCCCeE
Confidence 45667788888899999999888532 1 34467888888874 34443 344458888888899999998
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee---------C-CCCHHHH----HHHHHHHHhCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG---------L-GESDDDL----KEAMADLRSID 276 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG---------l-gEt~e~~----~~~l~~l~~lg 276 (351)
.+|.-.. .+-+++.+.++.+++ .|+.+..++=-| + +.|.+.+ .+.++.+.+++
T Consensus 110 RINPGNi-----------g~~~~~~~vv~~ak~--~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~g 176 (366)
T 3noy_A 110 RINPGNI-----------GKEEIVREIVEEAKR--RGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWG 176 (366)
T ss_dssp EECHHHH-----------SCHHHHHHHHHHHHH--HTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred EECCccc-----------CchhHHHHHHHHHHH--cCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 7763221 123445567777887 777765553333 3 2565444 44566777788
Q ss_pred CCEEee
Q 018731 277 VDILTL 282 (351)
Q Consensus 277 ~d~i~i 282 (351)
++.+-+
T Consensus 177 f~~ivi 182 (366)
T 3noy_A 177 FTNYKV 182 (366)
T ss_dssp CCCEEE
T ss_pred CCeEEE
Confidence 865444
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=84.59 E-value=11 Score=33.28 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
..+.+.++.+.+.|+..|.+...+ .+..+..+++ +.+++.. ++.| +..+|..++..++..+++|.|.|.++
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~--~~f~G~~~~l----~~i~~~v-~lPv--l~kdfI~d~~qi~~a~~~GAD~VlL~ 135 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEP--HRFGGSLLDL----KRVREAV-DLPL--LRKDFVVDPFMLEEARAFGASAALLI 135 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCC--SSSCCCHHHH----HHHHHHC-CSCE--EEESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEecch--hhhccCHHHH----HHHHHhc-CCCE--EECCcCCCHHHHHHHHHcCCCEEEEC
Confidence 567788888999999999774332 2333333333 3444432 4444 34678889888999999999999887
Q ss_pred hhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 018731 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (351)
Q Consensus 214 ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~ 285 (351)
...++ ++..+.++.+++ .|+.+. +- -.++++.. .+.+++.+.+.+++.
T Consensus 136 ~~~l~-------------~~l~~l~~~a~~--lGl~~l----ve-v~~~~E~~----~a~~~gad~IGvn~~ 183 (254)
T 1vc4_A 136 VALLG-------------ELTGAYLEEARR--LGLEAL----VE-VHTERELE----IALEAGAEVLGINNR 183 (254)
T ss_dssp HHHHG-------------GGHHHHHHHHHH--HTCEEE----EE-ECSHHHHH----HHHHHTCSEEEEESB
T ss_pred ccchH-------------HHHHHHHHHHHH--CCCeEE----EE-ECCHHHHH----HHHHcCCCEEEEccc
Confidence 54322 223345556666 676542 22 24566654 455678899998643
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=84.56 E-value=2.6 Score=38.01 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.++++++.+.|++.|.|- .++ .+.+.+.++.++..++.+.+++ .++ ++++.+..+++.|+|.|++|-
T Consensus 204 ~eea~eal~aGaD~I~LD-----n~~---~~~~~~~v~~l~~~~~~v~iea--SGG-It~~~i~~~a~tGVD~isvG~ 270 (284)
T 1qpo_A 204 LEQLDAVLPEKPELILLD-----NFA---VWQTQTAVQRRDSRAPTVMLES--SGG-LSLQTAATYAETGVDYLAVGA 270 (284)
T ss_dssp HHHHHHHGGGCCSEEEEE-----TCC---HHHHHHHHHHHHHHCTTCEEEE--ESS-CCTTTHHHHHHTTCSEEECGG
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHHhhccCCCeEEEE--ECC-CCHHHHHHHHhcCCCEEEECH
Confidence 356666667899877772 233 4788888888887666677776 344 388999999999999998763
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.43 E-value=8.7 Score=34.72 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.++
T Consensus 29 ~lv~~li~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 98 (300)
T 3eb2_A 29 RLCDDLIQAGVHGLTPLGSTGEF-------AYLGTAQREAVVRATIEAAQR---RVPVVAGVASTSVADAVAQAKLYEKL 98 (300)
T ss_dssp HHHHHHHHTTCSCBBTTSGGGTG-------GGCCHHHHHHHHHHHHHHHTT---SSCBEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECccccCc-------cccCHHHHHHHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHHc
Confidence 45666677788877543222211 123566666666666553222 23356677 46677777777888888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 99 Gadavlv 105 (300)
T 3eb2_A 99 GADGILA 105 (300)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8876655
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=4.8 Score=36.35 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=74.8
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc--EEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i--~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++.+.+.++.+.+.|++.|.|..-..- +. ...+.++++.+++..|++ .+++ +++.-+--.-.-.-.++|++
T Consensus 153 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~-~~---P~~~~~lv~~l~~~~~~~~i~~H~-Hn~~Gla~An~laA~~aGa~ 227 (298)
T 2cw6_A 153 ISPAKVAEVTKKFYSMGCYEISLGDTIGV-GT---PGIMKDMLSAVMQEVPLAALAVHC-HDTYGQALANTLMALQMGVS 227 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEETTSC-CC---HHHHHHHHHHHHHHSCGGGEEEEE-BCTTSCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCC-cC---HHHHHHHHHHHHHhCCCCeEEEEE-CCCCchHHHHHHHHHHhCCC
Confidence 45788899999999999999988533221 22 478999999999988764 4444 33332222333444678999
Q ss_pred eeecchhchHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 209 VFAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 209 ~i~~~ies~~~--~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
.|...+-.+-+ +-. .+-.....++.+..++. .|+.+ |-+.+.+.++.+++.+
T Consensus 228 ~vd~tv~GlG~cp~a~-g~aGN~~~E~lv~~l~~-----~g~~~--------~idl~~l~~~~~~~~~ 281 (298)
T 2cw6_A 228 VVDSSVAGLGGCPYAQ-GASGNLATEDLVYMLEG-----LGIHT--------GVNLQKLLEAGNFICQ 281 (298)
T ss_dssp EEEEBTTSCCCCTTSC-SSCCBCBHHHHHHHHHH-----HTCBC--------CCCHHHHHHHHHHHHH
T ss_pred EEEeecccccCCCCCC-CCcCChhHHHHHHHHHh-----cCCCC--------CcCHHHHHHHHHHHHH
Confidence 98655433211 111 01012356666666643 34431 3456667776666654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=83.98 E-value=4.2 Score=35.03 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
.++..+.++.+.+.|++.+.++..+.. .. +.....++++.+++.. ++.+-+ .++..+.+.++.+.++|++.|.+
T Consensus 32 ~~~~~~~a~~~~~~G~d~i~v~~~~~~-~~--~~~~~~~~i~~i~~~~-~ipvi~--~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 32 VGDPVEMAVRYEEEGADEIAILDITAA-PE--GRATFIDSVKRVAEAV-SIPVLV--GGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp EECHHHHHHHHHHTTCSCEEEEECCCC-TT--THHHHHHHHHHHHHHC-SSCEEE--ESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHHHcCCCEEEEEeCCcc-cc--CCcccHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEE
Confidence 456788888889999999988754321 11 2345667888888764 455443 44556888899999999999988
Q ss_pred chh
Q 018731 213 NIE 215 (351)
Q Consensus 213 ~ie 215 (351)
+.+
T Consensus 106 ~~~ 108 (253)
T 1h5y_A 106 NTA 108 (253)
T ss_dssp SHH
T ss_pred ChH
Confidence 744
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=83.87 E-value=11 Score=32.30 Aligned_cols=130 Identities=18% Similarity=0.279 Sum_probs=72.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.....+.++.+.+.|++.+.|---+.+..++ ...-.++++.+++... .+.+.+.+++ .++.++.+.++|.|.+
T Consensus 17 d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~--~~~~~~~~~~lr~~~~~~~~v~lmv~d---~~~~i~~~~~agad~v 91 (228)
T 1h1y_A 17 DFANLAAEADRMVRLGADWLHMDIMDGHFVPN--LTIGAPVIQSLRKHTKAYLDCHLMVTN---PSDYVEPLAKAGASGF 91 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC--BCBCHHHHHHHHTTCCSEEEEEEESSC---GGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecCCcCcc--hhhCHHHHHHHHhhcCCcEEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 45567778888888999976553111111121 0112367777887642 2344455543 3457899999999999
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC--CCCEEeeecccCC
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP 288 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l--g~d~i~i~~~l~P 288 (351)
.+..+..+ ... .+.++.+++ .|+.+. +.+. ..|..+. ++.+.+. ++|.+.++.. .|
T Consensus 92 ~vH~~~~~----------~~~---~~~~~~i~~--~g~~ig--v~~~-p~t~~e~---~~~~~~~~~~~d~vl~~sv-~p 149 (228)
T 1h1y_A 92 TFHIEVSR----------DNW---QELIQSIKA--KGMRPG--VSLR-PGTPVEE---VFPLVEAENPVELVLVMTV-EP 149 (228)
T ss_dssp EEEGGGCT----------TTH---HHHHHHHHH--TTCEEE--EEEC-TTSCGGG---GHHHHHSSSCCSEEEEESS-CT
T ss_pred EECCCCcc----------cHH---HHHHHHHHH--cCCCEE--EEEe-CCCCHHH---HHHHHhcCCCCCEEEEEee-cC
Confidence 77654321 111 244556666 787644 2232 2333322 2333455 7898888633 46
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=83.86 E-value=6 Score=35.70 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=75.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEEe-ecCCCCCHHHHHHHHHcC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECL-TSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~---i~i~~~-~~~~~~~~e~l~~L~~aG 206 (351)
.+++.+.+.++.+.+.|+..|.|..-..-.. ...+.++++.+++..|+ +.+.+- .++.-+--.-.-.-.++|
T Consensus 147 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aG 222 (293)
T 3ewb_X 147 SDRAFLIEAVQTAIDAGATVINIPDTVGYTN----PTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENG 222 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECSSSCCC----HHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCC----HHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhC
Confidence 4567788999999999999999954332212 37899999999998875 344432 333222333444456799
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
++.|..++-.+-. .. .....++.+-.++.-.. ..|+.+ |-..+.+.++.+++.+
T Consensus 223 a~~vd~sv~GlGe---ra--GN~~~E~vv~~L~~~~~-~~g~~t--------gidl~~L~~~s~~v~~ 276 (293)
T 3ewb_X 223 ARRVEGTINGIGE---RA--GNTALEEVAVALHIRKD-FYQAET--------NIVLNQFKNSSDLISR 276 (293)
T ss_dssp CCEEEEBGGGCCT---TT--CBCBHHHHHHHHHHTHH-HHCEEE--------CCCGGGHHHHHHHHHH
T ss_pred CCEEEeecccccc---cc--ccHhHHHHHHHHHhhhh-hcCCCC--------CCCHHHHHHHHHHHHH
Confidence 9998655444221 11 12467777777654211 024432 2344556666666654
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=83.85 E-value=9.1 Score=34.36 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEE--eccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCC-C-HHHHHHHHH
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-D-LRAVETLVH 204 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~l--tgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~-~-~e~l~~L~~ 204 (351)
.+.+++|+.+.+.+..+.|..-+.+ -..+. -+..+.+.|.++++.|++..|++-|...|..... + ++.+..+ +
T Consensus 29 lPvTpeEia~~A~~a~~AGAaivHlHvRd~~G--~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~ 105 (282)
T 2y7e_A 29 LPITPEEQAKEAKACFEAGARVIHLHIREDDG--RPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-A 105 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHTEEEEEECEECTTS--CEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-G
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCC--CcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-h
Confidence 4467899999999989999886655 22111 1112368999999999998889877764432211 3 3444444 6
Q ss_pred cCCCeeecchh
Q 018731 205 SGLDVFAHNIE 215 (351)
Q Consensus 205 aG~~~i~~~ie 215 (351)
...+..++++-
T Consensus 106 ~~Pe~asl~~g 116 (282)
T 2y7e_A 106 LKPEMATLNAG 116 (282)
T ss_dssp GCCSEEEEECC
T ss_pred cCCCEEEeccc
Confidence 67787765443
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=83.31 E-value=13 Score=33.94 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=50.0
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccC-CCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~l~----~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.+++.+++.++++.+.|..-|-+.|.. .+... +.+.+++..+++.|++.. ++.|.+=| ...+.++.-.++
T Consensus 30 ~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~-~vpiSIDT----~~~~Va~aAl~a 104 (314)
T 2vef_A 30 FALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES-DVLISIDT----WKSQVAEAALAA 104 (314)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEC----SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-CceEEEeC----CCHHHHHHHHHc
Confidence 456788889999999999988887632 11110 134567788888888763 55554422 256777777777
Q ss_pred CCCeee
Q 018731 206 GLDVFA 211 (351)
Q Consensus 206 G~~~i~ 211 (351)
|.+.|+
T Consensus 105 Ga~iIN 110 (314)
T 2vef_A 105 GADLVN 110 (314)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 777765
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=83.25 E-value=5.7 Score=35.77 Aligned_cols=81 Identities=16% Similarity=0.040 Sum_probs=52.2
Q ss_pred CCCCCH----HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHH
Q 018731 191 DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDL 265 (351)
Q Consensus 191 ~~~~~~----e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~ 265 (351)
++ +|. ..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++.
T Consensus 17 dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pvi~Gvg~~~t~~a 85 (291)
T 3a5f_A 17 TG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEA-------TTMTETERKETIKFVIDKVNK---RIPVIAGTGSNNTAAS 85 (291)
T ss_dssp SS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHH
T ss_pred CC-cCHHHHHHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCcccHHHH
Confidence 45 664 45666677899887653222211 123667777777776653334 23477888 5577888
Q ss_pred HHHHHHHHhCCCCEEee
Q 018731 266 KEAMADLRSIDVDILTL 282 (351)
Q Consensus 266 ~~~l~~l~~lg~d~i~i 282 (351)
.+..+.+.+.|+|.+.+
T Consensus 86 i~la~~a~~~Gadavlv 102 (291)
T 3a5f_A 86 IAMSKWAESIGVDGLLV 102 (291)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 88888888999987655
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.18 E-value=6.3 Score=35.47 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=69.2
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCC--CCC-HHHHHHHHHcCCCeeec
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF--RGD-LRAVETLVHSGLDVFAH 212 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~--~~~-~e~l~~L~~aG~~~i~~ 212 (351)
+.+.++.+.+.|++.|+|.--+++.-. +.+...++++..+. +.++. ...| ..+ .+.++.|.+.|+++|.-
T Consensus 113 M~~dI~~~~~~GAdGvVfG~L~~dg~i--D~~~~~~Li~~a~~----l~vTF-HRAFD~~~d~~~Ale~Li~lGvdrILT 185 (287)
T 3iwp_A 113 MKADIRLAKLYGADGLVFGALTEDGHI--DKELCMSLMAICRP----LPVTF-HRAFDMVHDPMAALETLLTLGFERVLT 185 (287)
T ss_dssp HHHHHHHHHHTTCSEEEECCBCTTSCB--CHHHHHHHHHHHTT----SCEEE-CGGGGGCSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeeeCCCCCc--CHHHHHHHHHHcCC----CcEEE-ECchhccCCHHHHHHHHHHcCCCEEEC
Confidence 456777788999999999532322111 25667777765543 33332 2322 113 57899999999999854
Q ss_pred chhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 213 ~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+=. ..+..+-++.++.+.+...| ...+|.|=|=+.+.+.+.++ ..|++.++++
T Consensus 186 SG~------------~~~a~~Gl~~Lk~Lv~~a~~---rI~ImaGGGV~~~Ni~~l~~---~tG~~~~H~S 238 (287)
T 3iwp_A 186 SGC------------DSSALEGLPLIKRLIEQAKG---RIVVMPGGGITDRNLQRILE---GSGATEFHCS 238 (287)
T ss_dssp CTT------------SSSTTTTHHHHHHHHHHHTT---SSEEEECTTCCTTTHHHHHH---HHCCSEEEEC
T ss_pred CCC------------CCChHHhHHHHHHHHHHhCC---CCEEEECCCcCHHHHHHHHH---hhCCCEEeEC
Confidence 211 01112223333333321122 23467776777776655543 5789888874
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=83.08 E-value=36 Score=36.83 Aligned_cols=135 Identities=9% Similarity=0.046 Sum_probs=85.3
Q ss_pred CCCchhHHHHHHHHHhCC--CcEEEEeccCCCC-----CCCCcHHHHHHHHHHHHHhCCCcEEEEeecC----CC-----
Q 018731 130 PPDPMEPENTAKAIASWG--VDYIVLTSVDRDD-----IPDGGSGHFARTVKAMKKQKPDIMVECLTSD----FR----- 193 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G--~~~I~ltgg~~~~-----l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~----~~----- 193 (351)
+++.++.+++++.+.+.| +..|-+.||...+ +.... .+.++.+++..|+..+.++..+ +.
T Consensus 569 ~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p----~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~ 644 (1165)
T 2qf7_A 569 RMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDP----WERLALIREGAPNLLLQMLLRGANGVGYTNYPD 644 (1165)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCH----HHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCH----HHHHHHHHHHchhhHHHHHhccccccccccCCc
Confidence 356788889999998885 5446554443210 11111 2344555655677776655321 11
Q ss_pred -CCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeee--C----C--CCHHH
Q 018731 194 -GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG--L----G--ESDDD 264 (351)
Q Consensus 194 -~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvG--l----g--Et~e~ 264 (351)
...+.++...++|++.+.+- .+. .+.+.....++.+++ .|..+...+.+. + . .+.+.
T Consensus 645 ~~~~~~i~~a~~~g~d~irif-~sl-----------~~~~~~~~~i~~~~~--~g~~v~~~i~~~~~~~d~~r~~~~~~~ 710 (1165)
T 2qf7_A 645 NVVKYFVRQAAKGGIDLFRVF-DCL-----------NWVENMRVSMDAIAE--ENKLCEAAICYTGDILNSARPKYDLKY 710 (1165)
T ss_dssp HHHHHHHHHHHHHTCCEEEEE-CTT-----------CCGGGGHHHHHHHHH--TTCEEEEEEECCSCTTCTTSGGGCHHH
T ss_pred hhHHHHHHHHHhcCcCEEEEE-eeH-----------HHHHHHHHHHHHHHh--ccceEEEEEEEeccccCCCCCCCCHHH
Confidence 02467889999999997652 111 133455567778888 888776665443 1 1 46788
Q ss_pred HHHHHHHHHhCCCCEEee
Q 018731 265 LKEAMADLRSIDVDILTL 282 (351)
Q Consensus 265 ~~~~l~~l~~lg~d~i~i 282 (351)
+.+.++.+.++|++.+.+
T Consensus 711 ~~~~~~~~~~~Ga~~i~l 728 (1165)
T 2qf7_A 711 YTNLAVELEKAGAHIIAV 728 (1165)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 899999999999998877
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=3.4 Score=39.61 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=57.4
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCCCCchhHHHHHHHHHhCCCcEEEEeccC-CCC---CC-CCcHHHHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVD-RDD---IP-DGGSGHFARTVKAMK 177 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~~~~eei~~~~~~~~~~G~~~I~ltgg~-~~~---l~-~~~~~~~~~li~~ik 177 (351)
..+++++|+- +|+.+ . .+.+++.+.++++.+.|+.-|-+.|.. .+. .+ ..+.+++..+++.++
T Consensus 193 vMGIlNvTPD--------SFsDg--g--~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~ 260 (442)
T 3mcm_A 193 RMGIVNLSNQ--------SFSDG--N--FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFK 260 (442)
T ss_dssp EEEEEECSSC--------C-CCC--S--SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCC--------CCCCC--C--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667776653 22222 2 567888899999999999988886532 110 11 122445666788887
Q ss_pred Hh---CC-CcEEEEeecCCCCCHHHHHHHHH--cCCCe-ee
Q 018731 178 KQ---KP-DIMVECLTSDFRGDLRAVETLVH--SGLDV-FA 211 (351)
Q Consensus 178 ~~---~p-~i~i~~~~~~~~~~~e~l~~L~~--aG~~~-i~ 211 (351)
+. .+ ++.|.+=| ...+.++.-.+ +|.+. |+
T Consensus 261 ~~~~~~~~~vpISIDT----~~~~VaeaAL~~~aGa~i~IN 297 (442)
T 3mcm_A 261 SQLANLIYKPLVSIDT----RKLEVMQKILAKHHDIIWMIN 297 (442)
T ss_dssp HHTTTCSSCCEEEEEC----CCHHHHHHHHHHHGGGCCEEE
T ss_pred hhccccCCCCeEEEeC----CCHHHHHHHHhhCCCCCEEEE
Confidence 72 22 55554422 26788888888 88887 53
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=82.94 E-value=16 Score=33.02 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.++..+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 39 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~ 108 (307)
T 3s5o_A 39 ENLHKLGTFPFRGFVVQGSNGEF-------PFLTSSERLEVVSRVRQAMPK---NRLLLAGSGCESTQATVEMTVSMAQV 108 (307)
T ss_dssp HHHHHHTTSCCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHTSCT---TSEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHcCC---CCcEEEecCCCCHHHHHHHHHHHHHc
Confidence 34555556677776543222211 123566666666666653222 23456677 45666677777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 109 Gadavlv 115 (307)
T 3s5o_A 109 GADAAMV 115 (307)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 7776555
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=82.30 E-value=29 Score=33.45 Aligned_cols=134 Identities=17% Similarity=0.200 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+..+.++.+.+.|++.+.+..... . .....+.++.+++..|++.+-+ .+ ..+.+.++.+.++|+|.|.++
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G--~----~~~~~e~i~~i~~~~p~~pvi~--g~-~~t~e~a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHG--H----SRRVIETLEMIKADYPDLPVVA--GN-VATPEGTEALIKAGADAVKVG 306 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC--S----SHHHHHHHHHHHHHCTTSCEEE--EE-ECSHHHHHHHHHTTCSEEEEC
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCC--c----hHHHHHHHHHHHHHCCCceEEe--CC-cCCHHHHHHHHHcCCCEEEEc
Confidence 3446677788889999988854432 1 2567889999999877765533 11 247888899999999999876
Q ss_pred hhchH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeec
Q 018731 214 IETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (351)
Q Consensus 214 ies~~-~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~ 284 (351)
.+... ...+...+.+...-..+..+..+.+. .++.+-++ |=-.+.+++.+.+. +|++.+.++.
T Consensus 307 ~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~-~~ipvia~---GGI~~~~di~kala----~GAd~V~iGr 370 (494)
T 1vrd_A 307 VGPGSICTTRVVAGVGVPQLTAVMECSEVARK-YDVPIIAD---GGIRYSGDIVKALA----AGAESVMVGS 370 (494)
T ss_dssp SSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHT-TTCCEEEE---SCCCSHHHHHHHHH----TTCSEEEESH
T ss_pred CCCCccccccccCCCCccHHHHHHHHHHHHhh-cCCCEEEE---CCcCCHHHHHHHHH----cCCCEEEECH
Confidence 54321 00011111122233333333333320 35553221 21246677766653 6999888764
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=82.30 E-value=2.8 Score=38.18 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
.+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++..|++.+.+- .++.-+--.-.-.-.++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~ 229 (307)
T 1ydo_A 154 VPIEQVIRLSEALFEFGISELSLGDTIGAAN----PAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITV 229 (307)
T ss_dssp CCHHHHHHHHHHHHHHTCSCEEEECSSCCCC----HHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCCcC----HHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCE
Confidence 4678889999999999999999953322212 47899999999998876544432 233222333344456789999
Q ss_pred eecchhchHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 210 FAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 210 i~~~ies~~~--~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
|...+-.+-+ +-..-. .....++.+..++ . .|+.+ |-+.+.+.++.+++.+
T Consensus 230 vd~tv~GlGecp~a~gra-GN~~~E~lv~~L~---~--~g~~t--------~idl~~L~~~~~~v~~ 282 (307)
T 1ydo_A 230 FDGSAGGLGGCPYAPGSS-GNAATEDIVYMLE---Q--MDIKT--------NVKLEKLLSAAKWIEE 282 (307)
T ss_dssp EEEBGGGCCEETTEEEEE-CBCBHHHHHHHHH---H--TTCBC--------CCCHHHHHHHHHHHHH
T ss_pred EEEcccccCCCCCCCCCC-CChhHHHHHHHHH---h--cCCCC--------CcCHHHHHHHHHHHHH
Confidence 9765543211 100001 1236677776654 3 45542 3456667666666654
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=82.28 E-value=32 Score=31.96 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+...+.++.+.+.|++.|.+..... . ...+.+.++.+++..|++.|-+-. ..+.+.+..+.++|+|.|.++
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G--~----~~~~~e~I~~ir~~~~~~~Vi~G~---V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHA--H----AKYVGKTLKSLRQLLGSRCIMAGN---VATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCC--S----SHHHHHHHHHHHHHHTTCEEEEEE---ECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC--C----cHhHHHHHHHHHHhcCCCeEEEcC---cCCHHHHHHHHHcCCCEEEEc
Confidence 4456678888889999777743222 1 257788999999987776654311 137889999999999999876
Q ss_pred hhchHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeee-eCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 214 IETVKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 214 ies~~~~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~Iv-GlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
....... .+...+.+.. .+..+..+.+ .-- -+|. |=-.+.+++.+.+. +|.|.+.++..+
T Consensus 170 ~g~G~~~~tr~~~g~g~p---~l~aI~~~~~--~~~----PVIAdGGI~~~~di~kALa----~GAd~V~iGr~f 231 (361)
T 3r2g_A 170 IGGGSVCSTRIKTGFGVP---MLTCIQDCSR--ADR----SIVADGGIKTSGDIVKALA----FGADFVMIGGML 231 (361)
T ss_dssp CSSSSCHHHHHHHCCCCC---HHHHHHHHTT--SSS----EEEEESCCCSHHHHHHHHH----TTCSEEEESGGG
T ss_pred CCCCcCccccccCCccHH---HHHHHHHHHH--hCC----CEEEECCCCCHHHHHHHHH----cCCCEEEEChHH
Confidence 5432111 1111111222 3455555544 211 2232 21246777766654 799999887544
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=82.12 E-value=29 Score=31.72 Aligned_cols=137 Identities=17% Similarity=0.143 Sum_probs=84.4
Q ss_pred hhHHHHHHHHH-hCCCcEEEEec--cCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec-CCCCCHHHHHHHHHcCCCe
Q 018731 134 MEPENTAKAIA-SWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS-DFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 134 eei~~~~~~~~-~~G~~~I~ltg--g~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~-~~~~~~e~l~~L~~aG~~~ 209 (351)
+++.+.++... +.|++.|-+.+ ..| ...+...+.+.++++.+.+.. ++.+.+-.. +-..+.+.++.-.++|.+.
T Consensus 80 ~~~~~~A~~~v~~~GAdiIDIg~eStrP-~~~~vs~ee~~~~V~~v~~~~-~vPlsIDg~~~~T~~~eV~eaAleagag~ 157 (323)
T 4djd_D 80 NEPGRWAQKCVAEYGADLIYLKLDGADP-EGANHSVDQCVATVKEVLQAV-GVPLVVVGCGDVEKDHEVLEAVAEAAAGE 157 (323)
T ss_dssp TCHHHHHHHHHHTTCCSEEEEECGGGCT-TTTCCCHHHHHHHHHHHHHHC-CSCEEEECCSCHHHHHHHHHHHHHHTTTS
T ss_pred HhHHHHHHHHHHHcCCCEEEEcCccCCC-CCCCCCHHHHHHHHHHHHhhC-CceEEEECCCCCCCCHHHHHHHHHhcCCC
Confidence 45778888777 89999998864 333 222334567888899988763 555544200 0002578999988888652
Q ss_pred ---ee-cchhchHHHHhhhcC--------CCCCHHHHHHHHHHHHHhCCCCe---EEEeeeee-CCCCHHHHHHHHHHHH
Q 018731 210 ---FA-HNIETVKRLQRIVRD--------PRAGYEQSLEVLKHAKLSKKGLI---TKSSIMLG-LGESDDDLKEAMADLR 273 (351)
Q Consensus 210 ---i~-~~ies~~~~~~~~r~--------~~~~~~~~l~~i~~~~~~~~Gi~---v~~~~IvG-lgEt~e~~~~~l~~l~ 273 (351)
|+ ++.+..+.+...... ...+.+-..+.++.+.+ .|+. +-.|-.+| +|.+.++-.++++.++
T Consensus 158 ~~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~--~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir 235 (323)
T 4djd_D 158 NLLLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINE--MNLPLDHIVIDPSIGGLGYGIEYSFSIMERIR 235 (323)
T ss_dssp CCEEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHT--TTCCGGGEEEECCCCCTTTTHHHHHHHHHHHH
T ss_pred CCeEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHH--cCCCHHHEEEeCCCccccCCHHHHHHHHHHHH
Confidence 32 233333333221110 01245555556667777 8993 66666677 5889998888888887
Q ss_pred h
Q 018731 274 S 274 (351)
Q Consensus 274 ~ 274 (351)
.
T Consensus 236 ~ 236 (323)
T 4djd_D 236 L 236 (323)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.03 E-value=20 Score=32.46 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.++|++.+.+.=-|.+- ..-+.+++.+.++.+.+.. | ..-+|+|. +.+.++..+..+.+.++
T Consensus 33 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Lt~~Er~~v~~~~v~~~-g---rvpViaGvg~~~t~~ai~la~~A~~~ 101 (313)
T 3dz1_A 33 RLTDFYAEVGCEGVTVLGILGEA-------PKLDAAEAEAVATRFIKRA-K---SMQVIVGVSAPGFAAMRRLARLSMDA 101 (313)
T ss_dssp HHHHHHHHTTCSEEEESTGGGTG-------GGSCHHHHHHHHHHHHHHC-T---TSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEeCccCcCh-------hhCCHHHHHHHHHHHHHHc-C---CCcEEEecCCCCHHHHHHHHHHHHHc
Confidence 56677778899987654222221 1347778888888887743 3 34578888 56788888888999999
Q ss_pred CCCEEeeecccCCCCCcccccCCCCHHH-HHHHHHHHHhcC
Q 018731 276 DVDILTLGQYLQPTPLHLTVKEYVTPEK-FDFWKAYGESIG 315 (351)
Q Consensus 276 g~d~i~i~~~l~PTp~~~~~~~~v~~~e-~~~~~~~~~~~G 315 (351)
|+|.+.+. +|.+. .+.++ +..++++++..+
T Consensus 102 Gadavlv~-----~P~~~-----~s~~~l~~~f~~va~a~~ 132 (313)
T 3dz1_A 102 GAAGVMIA-----PPPSL-----RTDEQITTYFRQATEAIG 132 (313)
T ss_dssp TCSEEEEC-----CCTTC-----CSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEC-----CCCCC-----CCHHHHHHHHHHHHHhCC
Confidence 99877662 22221 23333 445666666655
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=81.97 E-value=5.5 Score=34.62 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeec
Q 018731 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (351)
Q Consensus 133 ~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~ 212 (351)
..++.+.++.+.+.|++.|.++..+.. . .+.....++++.+++.. ++.+-+ .++..+.+.++.+.++|+|.+.+
T Consensus 30 ~~d~~~~a~~~~~~Gad~i~v~d~~~~-~--~~~~~~~~~i~~i~~~~-~iPvi~--~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 30 AGDPVEAARAYDEAGADELVFLDISAT-H--EERAILLDVVARVAERV-FIPLTV--GGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp TTCHHHHHHHHHHHTCSCEEEEECCSS-T--TCHHHHHHHHHHHHTTC-CSCEEE--ESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEEcCCcc-c--cCccccHHHHHHHHHhC-CCCEEE--ECCcCCHHHHHHHHHcCCCEEEE
Confidence 346777888888899999988754421 1 12345667888888753 555543 45666889999999999999988
Q ss_pred chhc
Q 018731 213 NIET 216 (351)
Q Consensus 213 ~ies 216 (351)
+-..
T Consensus 104 g~~~ 107 (252)
T 1ka9_F 104 NSAA 107 (252)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 7433
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=81.69 E-value=3.5 Score=36.03 Aligned_cols=132 Identities=15% Similarity=0.196 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCC--------CCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRD--------DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~--------~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
+|+++++.. .....++|.--.+. ++. ++.+.+.++++.+++. ++.+..+... +++.++.-++.
T Consensus 77 ~emi~ia~~---~kP~~vtLVPE~r~e~TTegGldv~-~~~~~l~~~i~~L~~~--GIrVSLFIDp---d~~qi~aA~~~ 147 (243)
T 1m5w_A 77 EEMLAIAVE---TKPHFCCLVPEKRQEVTTEGGLDVA-GQRDKMRDACKRLADA--GIQVSLFIDA---DEEQIKAAAEV 147 (243)
T ss_dssp HHHHHHHHH---HCCSEEEECCCCSSCSSCCSCCCSG-GGHHHHHHHHHHHHHT--TCEEEEEECS---CHHHHHHHHHT
T ss_pred HHHHHHHHH---cCCCEEEECCCCCCCcCCCcchhHH-hhHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHh
Confidence 455555544 35667777322111 121 2467889999999987 7888776531 78999999999
Q ss_pred CCCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC-CCCEEeee
Q 018731 206 GLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI-DVDILTLG 283 (351)
Q Consensus 206 G~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l-g~d~i~i~ 283 (351)
|.++|-+.-..+-.-+ ..-+ ...++.+.++.+.+++ .|+.|++ |+|-|.+.+... ..+ ++..++++
T Consensus 148 GA~~IELhTG~Ya~a~~~~~~--~~el~~i~~aa~~A~~--lGL~VnA----GHgL~y~Nv~~i----a~ip~i~ElnIG 215 (243)
T 1m5w_A 148 GAPFIEIHTGCYADAKTDAEQ--AQELARIAKAATFAAS--LGLKVNA----GHGLTYHNVKAI----AAIPEMHELNIG 215 (243)
T ss_dssp TCSEEEEECHHHHHCCSHHHH--HHHHHHHHHHHHHHHH--TTCEEEE----ESSCCTTTHHHH----HTCTTEEEEEEC
T ss_pred CcCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHHHHHH----hhCCCCeEEccC
Confidence 9999976543322211 0000 1356777888888888 9998776 455555554333 122 35567776
Q ss_pred ccc
Q 018731 284 QYL 286 (351)
Q Consensus 284 ~~l 286 (351)
..+
T Consensus 216 Hai 218 (243)
T 1m5w_A 216 HAI 218 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.68 E-value=6.1 Score=35.40 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=51.9
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCC-CCHHHHHHHHHcCC
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR-GDLRAVETLVHSGL 207 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~-~~~e~l~~L~~aG~ 207 (351)
.+.+++|+.+.+.+..+.|..-+.+=-=+++--+..+.+.|.++++.|++..|++-|...|.... ..++. ..+.+...
T Consensus 25 lPvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R-~~~~~~~P 103 (275)
T 3no5_A 25 VPITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNER-GAMLSLRP 103 (275)
T ss_dssp SCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGG-GTTGGGCC
T ss_pred CCCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHH-hhHhhcCC
Confidence 45788999999999999998866662111110111236899999999999888877765432211 11222 33345566
Q ss_pred Ceeecc
Q 018731 208 DVFAHN 213 (351)
Q Consensus 208 ~~i~~~ 213 (351)
+..+++
T Consensus 104 e~aSl~ 109 (275)
T 3no5_A 104 DMASLA 109 (275)
T ss_dssp SEEEEE
T ss_pred CEEEec
Confidence 776643
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=81.59 E-value=7.9 Score=35.71 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=77.9
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEe-ecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECL-TSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p-~i~i~~~-~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++.+.+.++.+.+.|+..|.+.+-..-.. ...+.++++.+++..| ++.+.+- +++.-+--.....-.++|++
T Consensus 146 ~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~ 221 (345)
T 1nvm_A 146 IPAEKLAEQGKLMESYGATCIYMADSGGAMS----MNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCD 221 (345)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECTTCCCC----HHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCccC----HHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCC
Confidence 3567888999999999999999976544222 4789999999999875 6666542 33322233445556789999
Q ss_pred eeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 209 ~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
.|-..+-.+-+ . . .....++.+..++. .|+. . |-+.+.+.++.+++.+
T Consensus 222 ~vd~tv~GlG~---~-a-GN~~le~lv~~L~~-----~g~~------~--~idl~~l~~~~~~~~~ 269 (345)
T 1nvm_A 222 RVDASLAGMGA---G-A-GNAPLEVFIAVAER-----LGWN------H--GTDLYTLMDAADDIVR 269 (345)
T ss_dssp EEEEBGGGCSS---T-T-CBCBHHHHHHHHHH-----HTCB------C--CSCHHHHHHHHHHTTG
T ss_pred EEEecchhccC---C-c-cCcCHHHHHHHHHh-----cCCC------C--CCCHHHHHHHHHHHHH
Confidence 98655444222 1 1 12467777776653 3443 1 3456677777766644
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=81.55 E-value=3.2 Score=37.12 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++++..+.|++.|.+... . .+.+.++++.++..+|++.+.+ .++. +++.+..+.++|+|.|.++
T Consensus 193 ee~~~A~~aGaD~I~ld~~-----~---~~~l~~~v~~l~~~~~~~~i~A--sGGI-~~~ni~~~~~aGaD~i~vG 257 (273)
T 2b7n_A 193 EEAKNAMNAGADIVMCDNL-----S---VLETKEIAAYRDAHYPFVLLEA--SGNI-SLESINAYAKSGVDAISVG 257 (273)
T ss_dssp HHHHHHHHHTCSEEEEETC-----C---HHHHHHHHHHHHHHCTTCEEEE--ESSC-CTTTHHHHHTTTCSEEECT
T ss_pred HHHHHHHHcCCCEEEECCC-----C---HHHHHHHHHHhhccCCCcEEEE--ECCC-CHHHHHHHHHcCCcEEEEc
Confidence 3444445678998887432 2 4778888888887778888876 3443 8899999999999999876
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=81.27 E-value=4.8 Score=35.75 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccC--------CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVD--------RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~--------~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
+|+++++..+ ....++|.--. +-++. +..+.+.++++.+++. ++.+.++.. -+++.++.-++.
T Consensus 105 ~emi~ial~~---kP~~vtLVPEkreE~TTegGlDv~-~~~~~L~~~i~~L~~~--GIrVSLFID---pd~~qI~aA~~~ 175 (278)
T 3gk0_A 105 PEMLDIACEI---RPHDACLVPEKRSELTTEGGLDVV-GHFDAVRAACKQLADA--GVRVSLFID---PDEAQIRAAHET 175 (278)
T ss_dssp HHHHHHHHHH---CCSEEEECCCSGGGBCSSSSBCTT-TTHHHHHHHHHHHHHT--TCEEEEEEC---SCHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCEEEECCCCCCCcCCCcchhhh-ccHHHHHHHHHHHHHC--CCEEEEEeC---CCHHHHHHHHHh
Confidence 4555555443 46677773211 11121 2467899999999987 788877653 178999999999
Q ss_pred CCCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC-CCCEEeee
Q 018731 206 GLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI-DVDILTLG 283 (351)
Q Consensus 206 G~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l-g~d~i~i~ 283 (351)
|.++|-+.-..+-..+ ...+ ...++.+.++.+.+++ .|+.|++ |.|-|.+.+... ..+ ++..++++
T Consensus 176 GAd~IELhTG~YA~a~~~~~~--~~el~rl~~aA~~A~~--lGL~VnA----GHGL~y~Nv~~i----a~ip~i~ElnIG 243 (278)
T 3gk0_A 176 GAPVIELHTGRYADAHDAAEQ--QREFERIATGVDAGIA--LGLKVNA----GHGLHYTNVQAI----AALPGIAELNIG 243 (278)
T ss_dssp TCSEEEECCHHHHTCSSHHHH--HHHHHHHHHHHHHHHH--TTCEEEE----CTTCCTTTHHHH----HTCTTEEEEEEC
T ss_pred CcCEEEEecchhhccCCchhH--HHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHHHHHH----HhCCCCeEEecC
Confidence 9999976433322111 0001 2256677788888888 9998775 455555554322 223 35567776
Q ss_pred ccc
Q 018731 284 QYL 286 (351)
Q Consensus 284 ~~l 286 (351)
..+
T Consensus 244 Hai 246 (278)
T 3gk0_A 244 HAI 246 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=81.19 E-value=5.8 Score=35.66 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCc--EEEEeecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i--~i~~~~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++++.+.++.+.+.|++.|.|..-..- + ....+.++++.+++..|++ .+++ .++.-+.......-.++|++
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~-~---~P~~~~~lv~~l~~~~~~~~l~~H~-Hn~~Gla~an~l~Ai~aG~~ 226 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLGDTIGR-G---TPDTVAAMLDAVLAIAPAHSLAGHY-HDTGGRALDNIRVSLEKGLR 226 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEETTSC-C---CHHHHHHHHHHHHTTSCGGGEEEEE-BCTTSCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCCCC-c---CHHHHHHHHHHHHHhCCCCeEEEEE-CCCcchHHHHHHHHHHhCCC
Confidence 45788999999999999999988532221 1 1478899999999987654 4444 23322334455556789999
Q ss_pred eeecchhchHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHh
Q 018731 209 VFAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (351)
Q Consensus 209 ~i~~~ies~~~--~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~ 274 (351)
.|..++-.+-+ +... +-.....++.+..++ . .|+.+ |-+.+.+.++.+++.+
T Consensus 227 ~vd~sv~GlG~cp~a~g-~~GN~~~e~lv~~l~---~--~g~~~--------~id~~~l~~~~~~~~~ 280 (295)
T 1ydn_A 227 VFDASVGGLGGCPFAPG-AKGNVDTVAVVEMLH---E--MGFET--------GLDLDRLRSAGLFTQA 280 (295)
T ss_dssp EEEEBTTCCSCBTTBTT-SCCBCBHHHHHHHHH---H--TTCBC--------CCCHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCCCCCC-CcCChhHHHHHHHHH---h--cCCCC--------CcCHHHHHHHHHHHHH
Confidence 99876544311 1111 101235677776654 3 56542 3356667777666655
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=81.07 E-value=4.4 Score=35.18 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=59.5
Q ss_pred CCchhHHHHHHHHHhCCCcEEEE--eccC-CCCCCCCcHHHHHHHHHHHHHhC-CCc--EEEEeecCCCCCHHHHHHHHH
Q 018731 131 PDPMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQK-PDI--MVECLTSDFRGDLRAVETLVH 204 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~l--tgg~-~~~l~~~~~~~~~~li~~ik~~~-p~i--~i~~~~~~~~~~~e~l~~L~~ 204 (351)
.+...+.+.++.+.+.|++.+.+ ..|. .+.+. .+ .++++.+++.+ +++ .++..+.+ ....++.+.+
T Consensus 14 ~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~-~G----~~~v~~ir~~~~~~~~~dvhLmv~~---p~~~i~~~~~ 85 (228)
T 3ovp_A 14 SDLANLGAECLRMLDSGADYLHLDVMDGHFVPNIT-FG----HPVVESLRKQLGQDPFFDMHMMVSK---PEQWVKPMAV 85 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBC-BC----HHHHHHHHHHHCSSSCEEEEEECSC---GGGGHHHHHH
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccc-cC----HHHHHHHHHhhCCCCcEEEEEEeCC---HHHHHHHHHH
Confidence 45566778888888889886655 3232 12232 12 34666777663 443 34444332 2357889999
Q ss_pred cCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 018731 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (351)
Q Consensus 205 aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (351)
+|.|.|++..|+.+ +. .+.++.+++ .|+++..
T Consensus 86 aGad~itvH~Ea~~-----------~~---~~~i~~i~~--~G~k~gv 117 (228)
T 3ovp_A 86 AGANQYTFHLEATE-----------NP---GALIKDIRE--NGMKVGL 117 (228)
T ss_dssp HTCSEEEEEGGGCS-----------CH---HHHHHHHHH--TTCEEEE
T ss_pred cCCCEEEEccCCch-----------hH---HHHHHHHHH--cCCCEEE
Confidence 99999998876632 22 345556677 8886433
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=80.54 E-value=20 Score=36.04 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=80.6
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEeecCCCC-CHHHHHHHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRG-DLRAVETLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~---p~i~i~~~~~~~~~-~~e~l~~L~~a 205 (351)
.++.++-+++++.+.+.|+++|=.+. |. .. ... .+.++.|.+.. ++..+.++++.... -+..++.++.+
T Consensus 89 ~~s~eeKl~Ia~~L~~lGVd~IEaGf--P~-as---p~D-~e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~a 161 (644)
T 3hq1_A 89 PMSPARKRRMFDLLVRMGYKEIEVGF--PS-AS---QTD-FDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGA 161 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEC--TT-TC---HHH-HHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC--CC-CC---hhH-HHHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhcC
Confidence 46788999999999999999987743 32 22 123 34556665542 36778777653210 12345567778
Q ss_pred CCCeeecchhchHHHH-hhhcCCCCCHHHHHHHH----HHHHHhCCC-CeEEEeeeeeC----CCCHHHHHHHHHHHHhC
Q 018731 206 GLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVL----KHAKLSKKG-LITKSSIMLGL----GESDDDLKEAMADLRSI 275 (351)
Q Consensus 206 G~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i----~~~~~~~~G-i~v~~~~IvGl----gEt~e~~~~~l~~l~~l 275 (351)
|.++|.+.+-+.+-.. ..+ +.+.++.++.+ +.+++...+ +.+..++.++- .-..+-+.+.++.+.++
T Consensus 162 ~~~~Vhif~stSd~h~~~~l---~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~ea 238 (644)
T 3hq1_A 162 PRAIVHFYNSTSILQRRVVF---RANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEV 238 (644)
T ss_dssp SEEEEEEEEECCHHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHh
Confidence 8888887666655432 223 35777766644 334441111 11122233332 12566677888888875
Q ss_pred ---CCC
Q 018731 276 ---DVD 278 (351)
Q Consensus 276 ---g~d 278 (351)
|++
T Consensus 239 G~~Gad 244 (644)
T 3hq1_A 239 IAPTPE 244 (644)
T ss_dssp HCCCSS
T ss_pred cCCCCC
Confidence 566
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=80.51 E-value=17 Score=34.93 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=43.4
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 140 ~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+.++...|.+-|.|... .+. .+.+.++++..++..-+.-+++ -+.+.++...++|.+.|.+|
T Consensus 123 i~ea~~~GAD~ILLi~a---~l~---~~~l~~l~~~a~~lgm~~LvEv------h~~eE~~~A~~lga~iIGin 184 (452)
T 1pii_A 123 IYLARYYQADACLLMLS---VLD---DDQYRQLAAVAHSLEMGVLTEV------SNEEEQERAIALGAKVVGIN 184 (452)
T ss_dssp HHHHHHTTCSEEEEETT---TCC---HHHHHHHHHHHHHTTCEEEEEE------CSHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEEEcc---cCC---HHHHHHHHHHHHHcCCeEEEEe------CCHHHHHHHHHCCCCEEEEe
Confidence 33467789999988543 244 3688899998888622223443 27788899999999988764
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=80.50 E-value=12 Score=32.47 Aligned_cols=88 Identities=7% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHHHhCC-CcEEEEeccCCCCCCCCc-HHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhch
Q 018731 140 AKAIASWG-VDYIVLTSVDRDDIPDGG-SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (351)
Q Consensus 140 ~~~~~~~G-~~~I~ltgg~~~~l~~~~-~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~ 217 (351)
++.+...| ++.|.+.+.+|. +.... .+...+-++.+++..+++.|++ .++ .+.+.+..++++|.|.+-.|
T Consensus 130 ~~~~l~~g~~D~VlvmsV~pG-f~gq~f~~~~l~ki~~lr~~~~~~~I~V--dGG-I~~~ti~~~~~aGAd~~V~G---- 201 (227)
T 1tqx_A 130 LVPILDTNLINTVLVMTVEPG-FGGQSFMHDMMGKVSFLRKKYKNLNIQV--DGG-LNIETTEISASHGANIIVAG---- 201 (227)
T ss_dssp GHHHHTTTCCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHCTTCEEEE--ESS-CCHHHHHHHHHHTCCEEEES----
T ss_pred HHHHhhcCCcCEEEEeeeccC-CCCcccchHHHHHHHHHHHhccCCeEEE--ECC-CCHHHHHHHHHcCCCEEEEe----
Confidence 44445555 889988777753 22111 1344566677777655666654 445 48999999999999998765
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHH
Q 018731 218 KRLQRIVRDPRAGYEQSLEVLKH 240 (351)
Q Consensus 218 ~~~~~~~r~~~~~~~~~l~~i~~ 240 (351)
+..++ ..++.+.++.++.
T Consensus 202 saIf~-----~~d~~~~i~~l~~ 219 (227)
T 1tqx_A 202 TSIFN-----AEDPKYVIDTMRV 219 (227)
T ss_dssp HHHHT-----CSSHHHHHHHHHH
T ss_pred HHHhC-----CCCHHHHHHHHHH
Confidence 22221 2356666665554
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=80.42 E-value=3.2 Score=37.72 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
+++.+..+.|+..|.+... . .+.+.++++.++..+|++.|.+ .+++ +++.+..+.++|+|.|.++
T Consensus 208 ee~~~A~~aGaD~I~ld~~-----~---~~~l~~~v~~l~~~~~~~~I~A--SGGI-t~~ni~~~~~aGaD~i~vG 272 (299)
T 2jbm_A 208 QEAVQAAEAGADLVLLDNF-----K---PEELHPTATVLKAQFPSVAVEA--SGGI-TLDNLPQFCGPHIDVISMG 272 (299)
T ss_dssp HHHHHHHHTTCSEEEEESC-----C---HHHHHHHHHHHHHHCTTSEEEE--ESSC-CTTTHHHHCCTTCCEEECT
T ss_pred HHHHHHHHcCCCEEEECCC-----C---HHHHHHHHHHhhccCCCeeEEE--ECCC-CHHHHHHHHHCCCCEEEEC
Confidence 3444455678998887432 1 4788888888887778888876 3454 8899999999999999875
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=80.42 E-value=37 Score=31.53 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies 216 (351)
.+.++.+.+.|++.|+|..... .+ +.+.+.++.+++.+|++.+-+-+ ..+.+.++.+.++|+|.|.++.+.
T Consensus 110 ~~~~~~lieaGvd~I~idta~G--~~----~~~~~~I~~ik~~~p~v~Vi~G~---v~t~e~A~~a~~aGAD~I~vG~gp 180 (366)
T 4fo4_A 110 EERVKALVEAGVDVLLIDSSHG--HS----EGVLQRIRETRAAYPHLEIIGGN---VATAEGARALIEAGVSAVKVGIGP 180 (366)
T ss_dssp HHHHHHHHHTTCSEEEEECSCT--TS----HHHHHHHHHHHHHCTTCEEEEEE---ECSHHHHHHHHHHTCSEEEECSSC
T ss_pred HHHHHHHHhCCCCEEEEeCCCC--CC----HHHHHHHHHHHHhcCCCceEeee---eCCHHHHHHHHHcCCCEEEEecCC
Confidence 4456777888999998843221 12 57788999999988887653311 137889999999999999876443
Q ss_pred hHH-HHhhhcCCCC-CHHHHHHHHHHHHHhCCCCeEEEeeeeeCC-CCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 217 VKR-LQRIVRDPRA-GYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 217 ~~~-~~~~~r~~~~-~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlg-Et~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
... -.+...+.+. ...-..+..+.++. .++.+ |..=| .+.+++.+.+ .+|.+.+.++..+
T Consensus 181 Gs~~~tr~~~g~g~p~~~~l~~v~~~~~~--~~iPV----IA~GGI~~~~di~kal----a~GAd~V~vGs~f 243 (366)
T 4fo4_A 181 GSICTTRIVTGVGVPQITAIADAAGVANE--YGIPV----IADGGIRFSGDISKAI----AAGASCVMVGSMF 243 (366)
T ss_dssp STTBCHHHHHCCCCCHHHHHHHHHHHHGG--GTCCE----EEESCCCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCCCcccccCcccchHHHHHHHHHHHhh--cCCeE----EEeCCCCCHHHHHHHH----HcCCCEEEEChHh
Confidence 211 0111111122 23233333333334 56653 22113 3566665554 4799998887544
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=80.35 E-value=7.3 Score=35.03 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=54.3
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCC-CHHHHHHHHHcCC
Q 018731 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-DLRAVETLVHSGL 207 (351)
Q Consensus 129 ~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~-~~e~l~~L~~aG~ 207 (351)
.+.+++|+.+.+.+..+.|..-+.+=-=+++--+..+.+.|.++++.|++..|++-|...|.+... .++.+.-+ +...
T Consensus 29 lPvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~P 107 (284)
T 3chv_A 29 VPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKP 107 (284)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCC
Confidence 446889999999999999988766621111101112368999999999998888877664422211 23444444 5667
Q ss_pred Ceeecch
Q 018731 208 DVFAHNI 214 (351)
Q Consensus 208 ~~i~~~i 214 (351)
+..+++.
T Consensus 108 e~aSl~~ 114 (284)
T 3chv_A 108 DMASLSV 114 (284)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 7766554
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=80.29 E-value=19 Score=32.76 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.+.=-|.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+.+.
T Consensus 36 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 105 (318)
T 3qfe_A 36 RYYAYLARSGLTGLVILGTNAEA-------FLLTREERAQLIATARKAVGP---DFPIMAGVGAHSTRQVLEHINDASVA 105 (318)
T ss_dssp HHHHHHHTTTCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHCT---TSCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHHc
Confidence 44555556666665543222111 022455555555555442222 12345566 34566666666666666
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 106 Gadavlv 112 (318)
T 3qfe_A 106 GANYVLV 112 (318)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 6665444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 351 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 7e-12 | |
| d1muwa_ | 386 | c.1.15.3 (A:) D-xylose isomerase {Streptomyces oli | 0.002 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 63.0 bits (152), Expect = 7e-12
Identities = 35/256 (13%), Positives = 79/256 (30%), Gaps = 17/256 (6%)
Query: 52 KPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGD 111
+P W + L L + EAQ + + + +
Sbjct: 1 RPRWTLSQV----------TELFEKPLLDLLFEAQ--QVHRQHFDPRQVQVSTLLSIKTG 48
Query: 112 TCTRGCRFCAV-KTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFA 170
C C++C + + + A +
Sbjct: 49 ACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMP 108
Query: 171 RTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAG 230
+ ++ K + C+T + +A ++GLD + HN++T +
Sbjct: 109 YLEQMVQGVKAMGLEACMTLGTLSESQAQRL-ANAGLDYYNHNLDTSPEFYGNII-TTRT 166
Query: 231 YEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290
Y++ L+ L+ + G+ S ++GLGE+ D + L ++ ++ +
Sbjct: 167 YQERLDTLEKVR--DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKV 224
Query: 291 LHLTVKEYVTPEKFDF 306
+ + + FDF
Sbjct: 225 KGTPLADNDDVDAFDF 240
|
| >d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]} Length = 386 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Streptomyces olivochromogenes [TaxId: 1963]
Score = 37.3 bits (86), Expect = 0.002
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGS-GHFARTVKAMKKQKPDIMVECL--T 189
++P T + +A G + D D IP G S +K ++ + T
Sbjct: 32 ALDPVETVQRLAELGAHGVTFH--DDDLIPFGSSDTERESHIKRFRQALDATGMTVPMAT 89
Query: 190 SDFRGDLRAV-ETLVHSGLDVFAHNIETVKR 219
++ + DV + + R
Sbjct: 90 TNLFTHPVFKDGGFTANDRDVRRYALRKTIR 120
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.86 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.61 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.55 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 94.76 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 94.22 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 92.86 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 91.42 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 89.92 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 89.53 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 89.0 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 88.64 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 87.97 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 87.66 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 87.14 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 87.07 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 86.62 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 86.56 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 86.02 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 85.97 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 85.79 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 85.63 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 85.62 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 85.08 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 84.84 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 84.69 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 84.25 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 83.84 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 83.65 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 83.59 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 83.53 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 83.47 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 83.42 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 83.26 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 82.94 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 82.94 | |
| d1b5ta_ | 275 | Methylenetetrahydrofolate reductase {Escherichia c | 82.87 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 82.37 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 81.69 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 80.6 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 80.48 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 80.31 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 80.29 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.2e-26 Score=213.64 Aligned_cols=233 Identities=17% Similarity=0.225 Sum_probs=180.0
Q ss_pred HHHHHHhcCCCHHHHHHHccCCCccccccCCCCceeeEEEEe-eccCCCCCCcCcccCCCCCC-----CCCCchhHHHHH
Q 018731 67 QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIML-LGDTCTRGCRFCAVKTSRNP-----APPDPMEPENTA 140 (351)
Q Consensus 67 ~~~~~ll~~~~l~~l~~~A~~p~i~~~~~~~~~~~~~~~~i~-~s~gC~~~C~FC~~~~~~~~-----~~~~~eei~~~~ 140 (351)
.|+.+|++ .++.+|+..|+ .+++..+++ +.+...+.++ .|+||+++|.||+++..++. ..++.+++++++
T Consensus 7 ee~~~L~~-~~~~dL~~~A~--~v~r~~~~~-~~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~ 82 (312)
T d1r30a_ 7 SQVTELFE-KPLLDLLFEAQ--QVHRQHFDP-RQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESA 82 (312)
T ss_dssp TTTHHHHH-SCHHHHHHHHH--HHHHHHSCT-TCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHH--HHHHHHcCC-CEEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHHH
Confidence 34566665 46777888888 886665554 4555555554 49999999999998763321 224678899999
Q ss_pred HHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH
Q 018731 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL 220 (351)
Q Consensus 141 ~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~ 220 (351)
+.+.+.|+.++++++|..+ ..+...+.+.++++.+++.. +.+.+ +.+.++++.++.|+++|++++.+++||.++.
T Consensus 83 ~~~~~~G~~~~~~~~g~~~-~~~~~~~~~~~~i~~~~~~~--~~~~~--~~~~l~~e~l~~lk~aG~~~i~~~iEs~~~~ 157 (312)
T d1r30a_ 83 RKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAMG--LEACM--TLGTLSESQAQRLANAGLDYYNHNLDTSPEF 157 (312)
T ss_dssp HHHHHTTCSEEEEEECCSS-CCTTTHHHHHHHHHHHHHTT--SEEEE--ECSSCCHHHHHHHHHHCCCEEECCCBSCHHH
T ss_pred HHHHHcCCEEEEEccCCCC-CchhhHHHHHHHHHhccccc--ceeee--ccccchHHHHHHhhcccceeEecccchhhhh
Confidence 9999999999999888643 23344678888888888764 34433 2234699999999999999999999998886
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCC--CEEeeecccCC---CCCcccc
Q 018731 221 QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDV--DILTLGQYLQP---TPLHLTV 295 (351)
Q Consensus 221 ~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~--d~i~i~~~l~P---Tp~~~~~ 295 (351)
++.+. ++.++++++++++.+++ .|+.+++++|+|+|||.+|+.+++..+++++. +.+.++ ++.| |+++ .
T Consensus 158 ~~~~~-~~~~~~~~~~~~~~a~~--~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~-~~~p~~gT~l~--~ 231 (312)
T d1r30a_ 158 YGNII-TTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPIN-MLVKVKGTPLA--D 231 (312)
T ss_dssp HHHHC-CSSCHHHHHHHHHHHHH--HHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEE-ECCCCTTSTTS--S
T ss_pred hccCC-CCCCHHHHHHHHHHHHH--hccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeec-cccCCCCcccc--c
Confidence 65554 57899999999999999 99999999999999999999999999998875 466664 3334 7775 3
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 018731 296 KEYVTPEKFDFWKAYGESI 314 (351)
Q Consensus 296 ~~~v~~~e~~~~~~~~~~~ 314 (351)
...++++++.++.+.++.+
T Consensus 232 ~~~~~~~e~l~~iA~~Rl~ 250 (312)
T d1r30a_ 232 NDDVDAFDFIRTIAVARIM 250 (312)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 4678899999888777763
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.5e-21 Score=184.94 Aligned_cols=218 Identities=16% Similarity=0.246 Sum_probs=162.5
Q ss_pred eEEEEeeccCCCCCCcCcccCCCCCCCC----CCchhHHHHHHHHHh----CCCcEEEEeccCCCCCCCCcHHHHHHHHH
Q 018731 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP----PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (351)
Q Consensus 103 ~~~~i~~s~gC~~~C~FC~~~~~~~~~~----~~~eei~~~~~~~~~----~G~~~I~ltgg~~~~l~~~~~~~~~~li~ 174 (351)
..++.+..++|+..|.||.+.+...... .+.+.+.++++.... ..+..|+|.||+|+.|+ .+.+.++++
T Consensus 49 plsLYiHiPFC~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~---~~~l~~ll~ 125 (441)
T d1olta_ 49 PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLMK 125 (441)
T ss_dssp CEEEEEEECEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCCCCcCeeecCCCcchHHHHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCCC---HHHHHHHHH
Confidence 3566667899999999999865321111 223344444543332 33678999999987776 578999999
Q ss_pred HHHHhCC---C--cEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 018731 175 AMKKQKP---D--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (351)
Q Consensus 175 ~ik~~~p---~--i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi 248 (351)
.+++.++ + +++++ .|.. .+++.++.|+++|++++++|+||+++ ..+.++ +.++.+++.++++.+++ .|+
T Consensus 126 ~l~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~-R~~~~~~~~~~~~~~r~--~g~ 200 (441)
T d1olta_ 126 LLRENFQFNADAEISIEV-DPRE-IELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHARE--IGF 200 (441)
T ss_dssp HHHHHSCEEEEEEEEEEE-CSSS-CCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHH--TTC
T ss_pred HHhhhccccchhcccccc-cccc-cchHHHHHHHHhCCceEEecchhcchhhhhhhh-cCCCHHHHHHHHHHHHh--ccc
Confidence 9998763 1 34444 3444 48899999999999999999999977 455554 58999999999999999 999
Q ss_pred e-EEEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCcc---cccCCCCHHHHH----HHHHHHHhcCcc
Q 018731 249 I-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL---TVKEYVTPEKFD----FWKAYGESIGFR 317 (351)
Q Consensus 249 ~-v~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i~~~l-~P-Tp~~~---~~~~~v~~~e~~----~~~~~~~~~G~~ 317 (351)
. |+.++|+|+ |||.+++.++++.+.++++|+++++++. .| +..+. ......++++.. ...+.+...||.
T Consensus 201 ~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~~~GY~ 280 (441)
T d1olta_ 201 TSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQ 280 (441)
T ss_dssp CSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred ceeecccccccCCcchHHHHHHHHHHHhhCCCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHHHHcCch
Confidence 6 999999999 9999999999999999999999998765 56 33321 112233444333 345567778999
Q ss_pred eeccCcccccc
Q 018731 318 YVASGPLVRSS 328 (351)
Q Consensus 318 ~~~~~~~~r~~ 328 (351)
++...+|++..
T Consensus 281 ~~~~~~far~~ 291 (441)
T d1olta_ 281 FIGMDHFARPD 291 (441)
T ss_dssp EEETTEEECTT
T ss_pred hhhHHHhhhcc
Confidence 99998888765
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.61 E-value=2.2e-14 Score=131.99 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=143.7
Q ss_pred EEEeeccCCCCCCcCcccCCCCC--------CCCCCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHH
Q 018731 105 TIMLLGDTCTRGCRFCAVKTSRN--------PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (351)
Q Consensus 105 ~~i~~s~gC~~~C~FC~~~~~~~--------~~~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~i 176 (351)
-.+.+|+.||.+|.||....... ...++.+++.+.++.+.+.|+..+.++||+|. +. ..+.+++...
T Consensus 14 l~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GGEp~-l~----~~~~e~i~~~ 88 (327)
T d1tv8a_ 14 LRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPL-MR----RDLDVLIAKL 88 (327)
T ss_dssp EEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGG-GS----TTHHHHHHHH
T ss_pred EEEEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCCccc-cc----ccHHHHHHHH
Confidence 34778999999999997543211 11267788999999999999999999999974 33 3566666666
Q ss_pred HHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeee
Q 018731 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (351)
Q Consensus 177 k~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~I 255 (351)
.+.. .....+.|+++.++++.++.|+++|++.|.+++++.++ .++.+++.+..++..++.++.+++ .|+.+...++
T Consensus 89 ~~~~-~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~--~g~~~~~~~~ 165 (327)
T d1tv8a_ 89 NQID-GIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATS--IGLNVKVNVV 165 (327)
T ss_dssp TTCT-TCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred hhhc-cccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHH--cCCCcceeEE
Confidence 6543 23333456777789999999999999999999999865 566666556789999999999999 9999888877
Q ss_pred eeCCCCHHHHHHHHHHHHhCCCCEEeeecccCCC-CCcccccCCCCHHHHHHHH
Q 018731 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT-PLHLTVKEYVTPEKFDFWK 308 (351)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l~PT-p~~~~~~~~v~~~e~~~~~ 308 (351)
+--+.+.+++.+.++++.+.+++...+ .++.+. ..........+.++.....
T Consensus 166 v~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (327)
T d1tv8a_ 166 IQKGINDDQIIPMLEYFKDKHIEIRFI-EFMDVGNDNGWDFSKVVTKDEMLTMI 218 (327)
T ss_dssp ECTTTTGGGHHHHHHHHHHTTCCEEEE-ECCCBCSSSSBCCSSCCCHHHHHHHH
T ss_pred EecCccccccHHHHHHHHhhcccccee-eeecccCcccccccccccHHHHHHHH
Confidence 644888999999999999999986555 344221 1111223455666554433
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.55 E-value=0.22 Score=41.13 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.++++..+.++.+.+.|++.+=+|--+ +...+.++.+++.+|++.+.+-| .++.+.++...++|.+.+
T Consensus 26 ~~~~~a~~~~~al~~~Gi~~iEitl~~---------p~a~~~i~~l~~~~p~~~vGaGT---V~~~~~~~~a~~aGa~Fi 93 (216)
T d1mxsa_ 26 AREEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRPELCVGAGT---VLDRSMFAAVEAAGAQFV 93 (216)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCTTSEEEEEC---CCSHHHHHHHHHHTCSSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHhCCCcceeeee---eecHHHHHHHHhCCCCEE
Confidence 357889999999999999988776432 24568889999989998887633 468999999999999965
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+. ++.| .-|..|+... .++|.+.+-+|
T Consensus 94 -------------vs-P~~~~----~v~~~a~~--~~i~----~iPG-v~TpsEi~~A----~~~G~~~vKlF 137 (216)
T d1mxsa_ 94 -------------VT-PGITE----DILEAGVD--SEIP----LLPG-ISTPSEIMMG----YALGYRRFKLF 137 (216)
T ss_dssp -------------EC-SSCCH----HHHHHHHH--CSSC----EECE-ECSHHHHHHH----HTTTCCEEEET
T ss_pred -------------EC-CCCcH----HHHHHHHh--cCCC----ccCC-cCCHHHHHHH----HHCCCCEEEec
Confidence 22 33332 45556777 7775 3444 3577776544 56888888875
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.37 Score=39.61 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
.+.++..+.++.+.+.|++.|=+|--++ ...+.++.+++.+|++.+.+-| .++.+.++...++|.+.+
T Consensus 24 ~~~~~a~~~~~al~~~Gi~~iEitl~tp---------~a~~~I~~l~~~~p~~~vGaGT---V~~~~~~~~a~~aGa~Fi 91 (213)
T d1wbha1 24 KKLEHAVPMAKALVAGGVRVLNVTLRTE---------CAVDAIRAIAKEVPEAIVGAGT---VLNPQQLAEVTEAGAQFA 91 (213)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEESCST---------THHHHHHHHHHHCTTSEEEEES---CCSHHHHHHHHHHTCSCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCeeeccc---cccHHHHHHHHHCCCcEE
Confidence 3578899999999999999887764222 3578888899889998776533 468999999999999976
Q ss_pred ecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 211 ~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .|+. ++-| ..|..|+... .++|.+.+-+|
T Consensus 92 -------------vS-P~~~~----~v~~~a~~--~~i~----~iPG-v~TpsEi~~A----~~~G~~~vKlF 135 (213)
T d1wbha1 92 -------------IS-PGLTE----PLLKAATE--GTIP----LIPG-ISTVSELMLG----MDYGLKEFKFF 135 (213)
T ss_dssp -------------EE-SSCCH----HHHHHHHH--SSSC----EEEE-ESSHHHHHHH----HHTTCCEEEET
T ss_pred -------------EC-CCCCH----HHHHHHHh--cCCC----ccCC-cCCHHHHHHH----HHCCCCEEEec
Confidence 22 34332 55567777 7775 3444 3577776554 56888888875
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=94.76 E-value=0.49 Score=38.81 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=78.9
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+.++..+.++.+.+.|++.|=+|--++ ...+.++.+++.+|++.+.+-| .++.+.++...++|.+.+
T Consensus 24 ~~~~~~~~~~al~~~Gi~~iEitl~~~---------~a~~~I~~l~~~~p~~~vGaGT---V~~~~~~~~a~~aGa~Fi- 90 (212)
T d1vhca_ 24 NADDILPLADTLAKNGLSVAEITFRSE---------AAADAIRLLRANRPDFLIAAGT---VLTAEQVVLAKSSGADFV- 90 (212)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHHHHHCTTCEEEEES---CCSHHHHHHHHHHTCSEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHhcCCCceEeeee---cccHHHHHHHHhhCCcEE-
Confidence 567889999999999999888864322 3467888998889998776633 468999999999999976
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
+. |..+. +.++.+++ .++. ++.| --|..|+... .++|.+.+-+|
T Consensus 91 ------------vS-P~~~~----~v~~~a~~--~~i~----~iPG-v~TpsEi~~A----~~~G~~~vK~F 134 (212)
T d1vhca_ 91 ------------VT-PGLNP----KIVKLCQD--LNFP----ITPG-VNNPMAIEIA----LEMGISAVKFF 134 (212)
T ss_dssp ------------EC-SSCCH----HHHHHHHH--TTCC----EECE-ECSHHHHHHH----HHTTCCEEEET
T ss_pred ------------EC-CCCCH----HHHHHHHh--cCCC----ccCC-cCCHHHHHHH----HHCCCCEEEEc
Confidence 22 33332 45556666 6765 3344 3566666544 46888887775
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=94.22 E-value=0.81 Score=38.82 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=89.0
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEeccCCCC---CC-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD---IP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 130 ~~~~eei~~~~~~~~~~G~~~I~ltgg~~~~---l~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
..+.++..+.++.+.+.|++.|-++++.... .. ......-.+.++.+........+..+........+.+....+.
T Consensus 25 ~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 104 (289)
T d1nvma2 25 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQA 104 (289)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHh
Confidence 4667888999999999999999885432110 00 0001123455566665544555554433233366778888888
Q ss_pred CCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 206 G~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
|.+.+.+... ....+...+.++.+++ .|+.+...++.-..-+.+.+.+.++.+.++|++.+.+
T Consensus 105 ~~~~~r~~~~------------~~~~~~~~~~~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l 167 (289)
T d1nvma2 105 GARVVRVATH------------CTEADVSKQHIEYARN--LGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM 167 (289)
T ss_dssp TCCEEEEEEE------------TTCGGGGHHHHHHHHH--HTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred cccceEEEee------------hhhhhhHhHHHHHHHH--hCCceeeEeeeccccCchhhhHHHHhhccccceeeee
Confidence 8887654211 1233344566777888 7888766665544667778889999999999998777
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.86 E-value=0.15 Score=40.47 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
.+++.++...|++.|.| |.+. .+.+.+.++.++...|.+.+++ .++ .+.+.+..+++.|+|.|+.|.
T Consensus 89 ~~q~~~a~~~~~diImL-----DN~s---p~~~k~~v~~~~~~~~~i~lEa--SGg-I~~~ni~~ya~~GvD~IS~ga 155 (169)
T d1qpoa1 89 LEQLDAVLPEKPELILL-----DNFA---VWQTQTAVQRRDSRAPTVMLES--SGG-LSLQTAATYAETGVDYLAVGA 155 (169)
T ss_dssp HHHHHHHGGGCCSEEEE-----ETCC---HHHHHHHHHHHHHHCTTCEEEE--ESS-CCTTTHHHHHHTTCSEEECGG
T ss_pred HHHhhhhhhcCCcEEEe-----cCcC---hHhHHHHHHHhhccCCeeEEEE--eCC-CCHHHHHHHHHcCCCEEECCc
Confidence 44556667789998888 3344 5789999999998888888887 334 388899999999999998764
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.42 E-value=0.099 Score=41.69 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+++..+...|++.|.|-. +. .+.+.++++.++...|.+.+++. ++ .+.+.+..+++.|+|.|+.|.
T Consensus 89 ~e~~~a~~~g~d~i~LDn-----~~---pe~~k~~~~~lk~~~~~i~lEaS--GG-I~~~ni~~~a~~GVD~Is~g~ 154 (170)
T d1o4ua1 89 EDALRAVEAGADIVMLDN-----LS---PEEVKDISRRIKDINPNVIVEVS--GG-ITEENVSLYDFETVDVISSSR 154 (170)
T ss_dssp HHHHHHHHTTCSEEEEES-----CC---HHHHHHHHHHHHHHCTTSEEEEE--EC-CCTTTGGGGCCTTCCEEEEGG
T ss_pred HHHHHHHhcCccEEEEcC-----cC---hhhHhHHHHHHHhhCCcEEEEEE--CC-CCHHHHHHHHHcCCCEEEcCc
Confidence 445566788999888832 33 47888889999888888888873 34 378888999999999998763
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=89.92 E-value=1.2 Score=37.25 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=82.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+..++.+.++.+.+.|++++++..-+.. . .+.....++++.+.+. ..+.+.+ .++..+.+.++.+.++|+++|.
T Consensus 28 ~~gdP~~~a~~~~~~g~dei~ivDld~~-~--~~~~~~~~~i~~i~~~-~~~pi~v--gGGIr~~e~i~~~l~~Ga~kvi 101 (253)
T d1thfd_ 28 DSGDPVELGKFYSEIGIDELVFLDITAS-V--EKRKTMLELVEKVAEQ-IDIPFTV--GGGIHDFETASELILRGADKVS 101 (253)
T ss_dssp CTTCHHHHHHHHHHTTCCEEEEEESSCS-S--SHHHHHHHHHHHHHTT-CCSCEEE--ESSCCSHHHHHHHHHTTCSEEE
T ss_pred ECCCHHHHHHHHHHcCCCEEEEEeeccc-c--cCcccHHHHHHHHHhc-cCcccee--ecccccchhhhhHHhcCCCEEE
Confidence 4456888899999999999999765541 2 1235667888888875 3555544 4566789999999999999998
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEee--------eeeCC---CCHHHHHHHHHHHHhCCCCEE
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--------MLGLG---ESDDDLKEAMADLRSIDVDIL 280 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--------IvGlg---Et~e~~~~~l~~l~~lg~d~i 280 (351)
++-...+. .+...+..+..-. .-+.+..++ ++..+ .+.-++.+.+..+.+.++..+
T Consensus 102 igs~~~~n-----------~~~l~~~~~~~G~--~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ei 168 (253)
T d1thfd_ 102 INTAAVEN-----------PSLITQIAQTFGS--QAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEI 168 (253)
T ss_dssp ESHHHHHC-----------THHHHHHHHHHCG--GGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEE
T ss_pred EChHHhhC-----------hHHHHHHHHHcCC--eeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEE
Confidence 87544321 1112222222211 112222222 22221 223346677788888898876
Q ss_pred eee
Q 018731 281 TLG 283 (351)
Q Consensus 281 ~i~ 283 (351)
-+.
T Consensus 169 i~t 171 (253)
T d1thfd_ 169 LLT 171 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=89.53 E-value=2 Score=36.33 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.++--+.+-. .-+.+++.+.++.+.+...| ...+|+|. +.+.++..+..+.++++
T Consensus 28 ~~i~~l~~~Gv~gl~~~G~tGE~~-------~Ls~~Er~~l~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~ 97 (292)
T d1xkya1 28 KLVNYLIDNGTTAIVVGGTTGESP-------TLTSEEKVALYRHVVSVVDK---RVPVIAGTGSNNTHASIDLTKKATEV 97 (292)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTGG-------GSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECeEccchh-------hCCHHHHHHHHHHHHHHhCC---CceEEEecCcccHHHHHHHHHHHHHc
Confidence 566777777888776643222210 23566666666666542222 34466677 67777777777777888
Q ss_pred CCCEEeee
Q 018731 276 DVDILTLG 283 (351)
Q Consensus 276 g~d~i~i~ 283 (351)
|+|.+.+.
T Consensus 98 Gad~ilv~ 105 (292)
T d1xkya1 98 GVDAVMLV 105 (292)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEC
Confidence 88776663
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=89.00 E-value=2.2 Score=35.53 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeec--CCCCC-HHHHHHHHHcCCCeee
Q 018731 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS--DFRGD-LRAVETLVHSGLDVFA 211 (351)
Q Consensus 135 ei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~--~~~~~-~e~l~~L~~aG~~~i~ 211 (351)
.+.+.++.+.+.|++.|+|..-+++.- -+.+.+.++++..+ ++.++. +- |...+ .+.++.|.+.|+++|-
T Consensus 73 ~M~~di~~~k~~G~dGvV~G~L~~dg~--iD~~~~~~L~~~a~----~l~vTF-HRAfD~~~d~~~al~~Li~lG~~rIL 145 (247)
T d1twda_ 73 AILEDVRTVRELGFPGLVTGVLDVDGN--VDMPRMEKIMAAAG----PLAVTF-HRAFDMCANPLYTLNNLAELGIARVL 145 (247)
T ss_dssp HHHHHHHHHHHTTCSEEEECCBCTTSS--BCHHHHHHHHHHHT----TSEEEE-CGGGGGCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCCCC--ccHHHHHHHHHHhc----ccCeee-ehhhhhhCCHHHHHHHHHhcCCCeEe
Confidence 346677778899999999965443211 22466666666554 344432 21 22223 5889999999999983
Q ss_pred cchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 212 ~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
-+ +...+..+-++.|+.+.+...|.. +|.|=|=|.+.+.+.+ +.|++.++++
T Consensus 146 TS------------Gg~~~a~~G~~~L~~L~~~a~~~i----Im~GgGI~~~Ni~~l~----~~g~~e~H~s 197 (247)
T d1twda_ 146 TS------------GQKSDALQGLSKIMELIAHRDAPI----IMAGAGVRAENLHHFL----DAGVLEVHSS 197 (247)
T ss_dssp EC------------TTSSSTTTTHHHHHHHHTSSSCCE----EEEESSCCTTTHHHHH----HHTCSEEEEC
T ss_pred cc------------CCCCchhHHHHHHHHHHHhcCCcE----EEecCCCCHHHHHHHH----HcCCCEEEEC
Confidence 21 111233333455555554223432 7888777777665543 2488888774
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=88.64 E-value=4.5 Score=32.44 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=49.4
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHH-hCCCcEEEEeecCCCCCHHHHHHHHHcCCCee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK-QKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~-~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i 210 (351)
+.++....++.+.+.|++-+=+|--++ ...+.++.+++ ..|++.+.+-| .++.+.++...++|.+.+
T Consensus 19 ~~~~a~~~~~al~~~Gi~~iEitlr~p---------~a~~~i~~l~~~~~~~~~vGaGT---V~~~~~~~~a~~aGa~fi 86 (202)
T d1wa3a1 19 SVEEAKEKALAVFEGGVHLIEITFTVP---------DADTVIKELSFLKEKGAIIGAGT---VTSVEQCRKAVESGAEFI 86 (202)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHTHHHHHTTCEEEEES---CCSHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHhcCCCcEEEecc---cccHHHHHHHHhhcccEE
Confidence 468889999999999999887753222 34566666664 34777776533 358999999999999976
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=87.97 E-value=3 Score=36.11 Aligned_cols=144 Identities=12% Similarity=0.027 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCC-----------HHHHHHH
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-----------LRAVETL 202 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~-----------~e~l~~L 202 (351)
-++.+.++.+.+.|++++++..-+...-...+...+.++++.+.+.. .+.+.+ .++..+ .|.++.|
T Consensus 48 GdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~-~vPi~v--GGGIrsi~di~~~~~~~~e~A~~l 124 (323)
T d1jvna1 48 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTV--GGGIKDIVDVDGTKIPALEVASLY 124 (323)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEE--ESSCSCEECTTCCEECHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc-ceeEEE--ecCcccHHHhhhccchhhHHHHHH
Confidence 47889999999999999988544321000001135678888877642 455544 333333 5788999
Q ss_pred HHcCCCeeecchhchHH--H-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC---------------------
Q 018731 203 VHSGLDVFAHNIETVKR--L-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--------------------- 258 (351)
Q Consensus 203 ~~aG~~~i~~~ies~~~--~-~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--------------------- 258 (351)
.++|+++|.+|-..+.. . ..... ...+..-.-+..+..-. .-+.++.++.-+.
T Consensus 125 l~~GadKVvI~T~ai~~p~~~~e~~~-~~~n~~li~~i~~~fGs--q~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
T d1jvna1 125 FRSGADKVSIGTDAVYAAEKYYELGN-RGDGTSPIETISKAYGA--QAVVISVDPKRVYVNSQADTKNKVFETEYPGPNG 201 (323)
T ss_dssp HHHTCSEEEECHHHHHHHHHHHHTTS-CCCSCSHHHHHHHHHCG--GGEEEEECEEEEEESSGGGCSSCCEECSSCCTTC
T ss_pred HHcCCCeEEechHHhhChHHHHHHHh-hcccchhHHHHHHHhCC--ceEEEEEEEEeccccccccccccccccccccCCC
Confidence 99999999998655432 2 23222 12233233333333322 2244555554321
Q ss_pred --------------CCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 259 --------------GESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 259 --------------gEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
..|.-++.+.+..+.++|+-.+-+.
T Consensus 202 ~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIllt 240 (323)
T d1jvna1 202 EKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 240 (323)
T ss_dssp CCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC
T ss_pred ccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEE
Confidence 1233367888899999999988884
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=87.66 E-value=5.3 Score=33.38 Aligned_cols=136 Identities=20% Similarity=0.217 Sum_probs=79.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC-CC---CC-CCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DD---IP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~---l~-~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.++++.++.++.+.+.|++-|-+.|... |. .+ +.+++++..+++.+++. ++.|.+ |. ...++++...++
T Consensus 23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~--~~~iSI---DT-~~~eVa~~al~~ 96 (264)
T d1ad1a_ 23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGF--DVKISV---DT-FRSEVAEACLKL 96 (264)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTS--SSEEEE---EC-SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhccc--Ccccch---hh-hhHHHHHHHHhc
Confidence 4678888889999999999988876431 11 11 13355677777777653 455543 22 267899999999
Q ss_pred CCCeee-c-chhchHHHHhhhc-------------CCCC--CHHH----HHHHHHHHHHhCCCCe---EEEeeeeeCCCC
Q 018731 206 GLDVFA-H-NIETVKRLQRIVR-------------DPRA--GYEQ----SLEVLKHAKLSKKGLI---TKSSIMLGLGES 261 (351)
Q Consensus 206 G~~~i~-~-~ies~~~~~~~~r-------------~~~~--~~~~----~l~~i~~~~~~~~Gi~---v~~~~IvGlgEt 261 (351)
|++.|+ + +...-.++.+.+. .+.. .+.+ ..+.++.+.+ .|+. +..+-=+|||.|
T Consensus 97 Ga~iINDVs~g~~d~~~~~~va~~~~~~ilmH~~~~~~~~~~~~~v~~~~~~~~~~~~~--~Gi~~~~IilDPGiGFgKt 174 (264)
T d1ad1a_ 97 GVDIINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKI--AGIPSNKIWLDPGIGFAKT 174 (264)
T ss_dssp TCCEEEETTTTSSCTHHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHH--TTCCGGGEEEECCTTSSCC
T ss_pred CCcEeeccccccccccHHHHHhhcCcceeeeeeccccccCccchhhhhHHHHHHHHHHh--hccccceEEeccCcCcccc
Confidence 999887 3 2211111211110 0111 1233 3444555666 8884 444434566899
Q ss_pred HHHHHHHHHHHHh
Q 018731 262 DDDLKEAMADLRS 274 (351)
Q Consensus 262 ~e~~~~~l~~l~~ 274 (351)
.++=.+.++.+..
T Consensus 175 ~~~n~~ll~~l~~ 187 (264)
T d1ad1a_ 175 RNEEAEVMARLDE 187 (264)
T ss_dssp HHHHHHHHHCHHH
T ss_pred chhHHHHHHHHHH
Confidence 8886666665544
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.14 E-value=4 Score=34.36 Aligned_cols=73 Identities=23% Similarity=0.190 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
..++.+.+.|++.+.++=-|.+- ..-+.+++.+.++.+.+ .. ..+++|. +-+.++..+..+..+++
T Consensus 24 ~~i~~l~~~Gv~gi~~~GttGE~-------~~Ls~~Er~~~~~~~~~--~~----~~~i~gv~~~st~~~i~~a~~a~~~ 90 (293)
T d1w3ia_ 24 IHAENLIRKGIDKLFVNGTTGLG-------PSLSPEEKLENLKAVYD--VT----NKIIFQVGGLNLDDAIRLAKLSKDF 90 (293)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHT--TC----SCEEEECCCSCHHHHHHHHHHGGGS
T ss_pred HHHHHHHHcCCCEEEECeechhh-------hhCCHHHHHHHHHHHHh--hc----cccccccccchhhhhhhhhhhhhhh
Confidence 56667777788877653222211 02366677777776665 21 2355666 66777777777778888
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|++.+.+
T Consensus 91 Ga~~~~~ 97 (293)
T d1w3ia_ 91 DIVGIAS 97 (293)
T ss_dssp CCSEEEE
T ss_pred ccccccc
Confidence 8877655
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=87.07 E-value=1.2 Score=38.05 Aligned_cols=121 Identities=18% Similarity=0.150 Sum_probs=71.3
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEe-ecCCCCCHHHHHHHHHcCCCe
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~-~~~~~~~~e~l~~L~~aG~~~ 209 (351)
+++.+.+.++.+.+.|++.|.|..-..-.. ...+.++++.+++.+ |++.+.+- +++.-+-..-.-.-.++|++.
T Consensus 159 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~li~~l~~~~~~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~ 234 (303)
T d1rqba2 159 TVEGYVKLAGQLLDMGADSIALKDMAALLK----PQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDV 234 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTCCCC----HHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHHHhcCCcEEeecCccchhh----hHHHHHHHHHHHhhcCCcccceeccCchHHHHHHHHHHHHHcCCCE
Confidence 567888999999999999999843322212 478999999998875 66554431 344322333334455789999
Q ss_pred eecchhchHHHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhC
Q 018731 210 FAHNIETVKRLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (351)
Q Consensus 210 i~~~ies~~~~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~l 275 (351)
|...+-.+=+ .++ ...++.+..+ ++ .|+.+ |-+.+.+.+..+++.++
T Consensus 235 id~ti~GlG~------~~GN~~te~lv~~L---~~--~g~~t--------~idl~~L~~i~~~~~~i 282 (303)
T d1rqba2 235 VDTAISSMSL------GPGHNPTESVAEML---EG--TGYTT--------NLDYDRLHKIRDHFKAI 282 (303)
T ss_dssp EEEBCGGGCS------TTSBCBHHHHHHHT---TT--SSEEC--------CCCHHHHHHHHHHHHHH
T ss_pred EEECCccCCC------CCCCccHHHHHHHH---Hh--cCCCC--------CCCHHHHHHHHHHHHHH
Confidence 8654433211 122 3566665544 33 55542 23445555555555443
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=86.62 E-value=2 Score=35.71 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeee
Q 018731 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~ 211 (351)
+..++.+.++.+.+.|++++++..-+.. .. +.....++++.+.+.. .+.+.+ .++..+.+.++.+.++|+++|.
T Consensus 28 ~~gdP~~~a~~~~~~g~dei~iiDl~~~-~~--~~~~~~~~i~~i~~~~-~~pi~v--gGGIrs~e~~~~ll~~Ga~kVi 101 (251)
T d1ka9f_ 28 DAGDPVEAARAYDEAGADELVFLDISAT-HE--ERAILLDVVARVAERV-FIPLTV--GGGVRSLEDARKLLLSGADKVS 101 (251)
T ss_dssp STTCHHHHHHHHHHHTCSCEEEEECCSS-TT--CHHHHHHHHHHHHTTC-CSCEEE--ESSCCSHHHHHHHHHHTCSEEE
T ss_pred ECCCHHHHHHHHHHcCCCEEEEEecccc-cc--cchhHHHHHHHHHhcc-Ccchhe--eccccCHHHHHHHHHcCCCEEE
Confidence 3446778888888999999999765542 11 2356678888888753 455544 4566689999999999999998
Q ss_pred cchhc
Q 018731 212 HNIET 216 (351)
Q Consensus 212 ~~ies 216 (351)
++-..
T Consensus 102 i~s~~ 106 (251)
T d1ka9f_ 102 VNSAA 106 (251)
T ss_dssp ECHHH
T ss_pred ECchh
Confidence 87443
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=1 Score=37.55 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCC-CC------CcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcC
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDI-PD------GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l-~~------~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+++.+.+..+ ....++|.=-.+..+ ++ .+.+.+..+++.+++. ++++.++... +.+.++..++.|
T Consensus 76 ~e~i~ia~~~---kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~l~~~--girvSLFiDp---d~~~i~~a~~lG 147 (242)
T d1m5wa_ 76 EEMLAIAVET---KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADA--GIQVSLFIDA---DEEQIKAAAEVG 147 (242)
T ss_dssp HHHHHHHHHH---CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHT--TCEEEEEECS---CHHHHHHHHHTT
T ss_pred hhHHHHHHHh---ccceEEEeecCccccCcCCceeehhhHHHHHHHHHHHHhc--CCeEEEEecc---chhhHHHHhhcC
Confidence 4555555443 467777743222222 11 2247788999999886 7888776532 689999999999
Q ss_pred CCeeecchhchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCC-CCEEeeec
Q 018731 207 LDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQ 284 (351)
Q Consensus 207 ~~~i~~~ies~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg-~d~i~i~~ 284 (351)
.|+|-+.-..+-..+ +... ....++..++.+.+++ .|+.|++ |+|=+.+.+.. +.+++ ++.++++.
T Consensus 148 ad~IElhTG~Ya~a~~~~~~--~~el~~i~~aa~~A~~--lGL~VnA----GHgLn~~Nl~~----i~~ip~i~EvsIGH 215 (242)
T d1m5wa_ 148 APFIEIHTGCYADAKTDAEQ--AQELARIAKAATFAAS--LGLKVNA----GHGLTYHNVKA----IAAIPEMHELNIGH 215 (242)
T ss_dssp CSEEEEECHHHHHCCSHHHH--HHHHHHHHHHHHHHHH--TTCEEEE----ESSCCTTTHHH----HHTCTTEEEEEECH
T ss_pred cceeeeecccccccccchhh--HHHHHHHHHHHHHHHh--cCCcccC----CCCcCccchHH----HhcCCCCeEEeccH
Confidence 999976543332211 1100 1245667778888888 8998765 56656555532 23343 66777875
Q ss_pred cc
Q 018731 285 YL 286 (351)
Q Consensus 285 ~l 286 (351)
++
T Consensus 216 ai 217 (242)
T d1m5wa_ 216 AI 217 (242)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=86.02 E-value=1.7 Score=35.56 Aligned_cols=83 Identities=12% Similarity=0.221 Sum_probs=54.8
Q ss_pred CCcEEEEeccCCCCCCCCc-HHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhc
Q 018731 147 GVDYIVLTSVDRDDIPDGG-SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR 225 (351)
Q Consensus 147 G~~~I~ltgg~~~~l~~~~-~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r 225 (351)
.+..+.+.+++|. +.... .+...+-++.+++..|++.|.+ .++ .+.+.+..++++|+|.+-.| +.++ +
T Consensus 133 ~~d~vlim~v~PG-~~GQ~f~~~~l~kI~~l~~~~~~~~I~V--DGG-In~~~i~~l~~aGad~~V~G----S~if---~ 201 (220)
T d1h1ya_ 133 PVELVLVMTVEPG-FGGQKFMPEMMEKVRALRKKYPSLDIEV--DGG-LGPSTIDVAASAGANCIVAG----SSIF---G 201 (220)
T ss_dssp CCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHCTTSEEEE--ESS-CSTTTHHHHHHHTCCEEEES----HHHH---T
T ss_pred ccceEEEEecCCC-CcccccchhhhHHHHHHHhcCCCceEEE--Eec-CCHHHHHHHHHCCCCEEEEC----HHHH---C
Confidence 3678888877764 32111 1345566777888888888765 444 48899999999999998766 2233 2
Q ss_pred CCCCCHHHHHHHHHHHH
Q 018731 226 DPRAGYEQSLEVLKHAK 242 (351)
Q Consensus 226 ~~~~~~~~~l~~i~~~~ 242 (351)
..++.+.++.++.+.
T Consensus 202 --~~d~~~~i~~lr~~~ 216 (220)
T d1h1ya_ 202 --AAEPGEVISALRKSV 216 (220)
T ss_dssp --SSCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHH
Confidence 346666666666554
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.97 E-value=10 Score=33.07 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies 216 (351)
.+.+..+.+.|++.|++...+. . ...+.+.++.+|+.+|+..|-+ .+. .+.+....|.++|+|.|-+++-.
T Consensus 109 ~er~~~l~~agvd~ivID~A~G--~----s~~~~~~i~~ik~~~~~~~iIa--GNV-~T~e~a~~L~~aGaD~VkVGiG~ 179 (365)
T d1zfja1 109 FERAEALFEAGADAIVIDTAHG--H----SAGVLRKIAEIRAHFPNRTLIA--GNI-ATAEGARALYDAGVDVVKVGIGP 179 (365)
T ss_dssp HHHHHHHHHHTCSEEEECCSCT--T----CHHHHHHHHHHHHHCSSSCEEE--EEE-CSHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHcCCCEEEEECCcc--c----ccchhHHHHHHHhhCCCcceee--ccc-ccHHHHHHHHhcCCceEEeeecc
Confidence 3456667788999998865443 2 3788999999999888865533 111 37899999999999999877644
Q ss_pred hHH-HHhhhcCCCC-CHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 217 VKR-LQRIVRDPRA-GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 217 ~~~-~~~~~r~~~~-~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
..- ..+...+-+. ...-+.+.-+.+++ .+..+-++- | -.+.-|+.+.+ .+|.|.|.++..|
T Consensus 180 Gs~CTTr~~tGvGvPq~sai~~~~~~~~~--~~~~iIADG--G-i~~~GDi~KAl----a~GAd~VMlG~~l 242 (365)
T d1zfja1 180 GSICTTRVVAGVGVPQVTAIYDAAAVARE--YGKTIIADG--G-IKYSGDIVKAL----AAGGNAVMLGSMF 242 (365)
T ss_dssp CTTBCHHHHTCCCCCHHHHHHHHHHHHHH--TTCEEEEES--C-CCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred cccccCcceeeeeccchhHHHHHHHHHHh--CCceEEecC--C-cCcchhhhhhh----hccCCEEEecchh
Confidence 332 1222221111 33344555555566 676643432 1 24666776665 6899999998666
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=85.79 E-value=6.4 Score=32.58 Aligned_cols=130 Identities=7% Similarity=0.063 Sum_probs=81.8
Q ss_pred CCchhHHHHHHHHHhCCCcE-EEEeccCCCCCCCCcHHHHHHHHHHHHHhCC--CcEEEEeecCCCCCHHHHHHHHHcC-
Q 018731 131 PDPMEPENTAKAIASWGVDY-IVLTSVDRDDIPDGGSGHFARTVKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHSG- 206 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~-I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p--~i~i~~~~~~~~~~~e~l~~L~~aG- 206 (351)
.++++..+.+..+.+.+..+ ++| -+| +...+++...+.+..+++... +..+-+...+...+.+.+..+.+.|
T Consensus 89 ~~~~eai~~~~~L~~~~~~y~i~i--EqP--~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i~~~a 164 (253)
T d1kcza1 89 VDIKAMADYIQTLAEAAKPFHLRI--EGP--MDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKA 164 (253)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCEEE--ECS--BCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCceE--ecC--CCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHHHhCC
Confidence 45777777777777665443 455 223 333334455566666665421 2233333455555777777777765
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC--CCCHHHHHHHHHHHHhCCCCEEe
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILT 281 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl--gEt~e~~~~~l~~l~~lg~d~i~ 281 (351)
+|.+++.+ .+ -.+..+.+++++.+++ .|+. +++|. |||..............++..+.
T Consensus 165 ~d~v~iK~---------~k--~GGi~~al~~~~~a~~--~Gi~----~~vg~~~~Et~~s~~a~~hla~A~~~~~~~ 224 (253)
T d1kcza1 165 GHMVQIKT---------PD--LGGVNNIADAIMYCKA--NGMG----AYCGGTCNETNRSAEVTTNIGMACGARQVL 224 (253)
T ss_dssp SSEEEECT---------GG--GSSTHHHHHHHHHHHH--TTCE----EEECCCTTSCHHHHHHHHHHHHHHTCSEEE
T ss_pred cCeeeccc---------cc--cCCHHHHHHHHHHHHH--cCCc----EEEcCccCCcchHHHHHHHHHHhcCcchhh
Confidence 77765531 11 4578899999999999 9986 45664 99999877666666677776543
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=85.63 E-value=3.2 Score=33.78 Aligned_cols=85 Identities=6% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhc
Q 018731 146 WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR 225 (351)
Q Consensus 146 ~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r 225 (351)
..+..|.+.+.+|..-...-.+...+-++.+++..|++.|++ .++ .+.+.+..++++|+|.+-.| ..++ +
T Consensus 134 ~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~V--DGG-In~~~i~~l~~aGad~iV~G----S~if---~ 203 (221)
T d1tqxa_ 134 NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV--DGG-LNIETTEISASHGANIIVAG----TSIF---N 203 (221)
T ss_dssp TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE--ESS-CCHHHHHHHHHHTCCEEEES----HHHH---T
T ss_pred ccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEE--Ecc-cCHHhHHHHHHcCCCEEEEC----hHHH---C
Confidence 357888888777532111112355566677888888888764 445 48999999999999998765 2232 2
Q ss_pred CCCCCHHHHHHHHHHHH
Q 018731 226 DPRAGYEQSLEVLKHAK 242 (351)
Q Consensus 226 ~~~~~~~~~l~~i~~~~ 242 (351)
..++.+.++.++.+.
T Consensus 204 --~~d~~~~i~~Lr~~i 218 (221)
T d1tqxa_ 204 --AEDPKYVIDTMRVSV 218 (221)
T ss_dssp --CSSHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHH
Confidence 346666666666543
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.62 E-value=0.081 Score=28.19 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=10.1
Q ss_pred CCCCcCcccCCC
Q 018731 114 TRGCRFCAVKTS 125 (351)
Q Consensus 114 ~~~C~FC~~~~~ 125 (351)
|++|.||+|...
T Consensus 2 PFkC~~CsFDtk 13 (29)
T d1x5wa2 2 PFKCNYCSFDTK 13 (29)
T ss_dssp SEECSSSSCEES
T ss_pred Ccccceeccccc
Confidence 689999999764
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=85.08 E-value=6.6 Score=33.91 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhc
Q 018731 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies 216 (351)
.+.++.+.+.|++.+++...+. . ..++.+.++.+++.+|++.+-+- +. .+.+..+.|.++|.|.|-+++..
T Consensus 100 ~e~~~~li~agvd~ivId~A~G--~----~~~~~~~ik~ik~~~~~~~viaG--nV-~t~~~a~~l~~~GaD~v~VGig~ 170 (330)
T d1vrda1 100 MERVEKLVKAGVDVIVIDTAHG--H----SRRVIETLEMIKADYPDLPVVAG--NV-ATPEGTEALIKAGADAVKVGVGP 170 (330)
T ss_dssp HHHHHHHHHTTCSEEEECCSCC--S----SHHHHHHHHHHHHHCTTSCEEEE--EE-CSHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHCCCCEEEEecCCC--C----chhHHHHHHHHHHhCCCCCEEee--ch-hHHHHHHHHHHcCCCEEeecccc
Confidence 3456677788999888855543 2 37889999999998888765431 11 37899999999999999887755
Q ss_pred hHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 217 VKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 217 ~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
..- ..+...+.+ ....-..+..+.++. .++.+-++- | -.+..++.+.+ .+|.|.|.++..+
T Consensus 171 Gs~ctt~~~~G~g~p~~sai~~~~~~~~~--~~vpvIAdG--G-i~~~gdiakAl----a~GAd~Vm~Gs~f 233 (330)
T d1vrda1 171 GSICTTRVVAGVGVPQLTAVMECSEVARK--YDVPIIADG--G-IRYSGDIVKAL----AAGAESVMVGSIF 233 (330)
T ss_dssp STTCHHHHHHCCCCCHHHHHHHHHHHHHT--TTCCEEEES--C-CCSHHHHHHHH----HTTCSEEEESHHH
T ss_pred CccccccceeccccccchhHHHHHHHHHh--cCceEEecC--C-cccCCchheee----eccCceeeecchh
Confidence 432 122222112 234445555555555 666644431 1 13556666554 5899999987655
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.84 E-value=2.1 Score=35.64 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.++.+.++.+.+.|++++++..-+.. .. +.....++++.+.+.. .+.+.+ .++..+.+.++.+.++|+++|.++
T Consensus 32 ~dP~~~a~~~~~~gadei~ivDl~~~-~~--~~~~~~~~i~~i~~~~-~~pi~~--gGGIr~~e~~~~ll~~G~~kVii~ 105 (252)
T d1h5ya_ 32 GDPVEMAVRYEEEGADEIAILDITAA-PE--GRATFIDSVKRVAEAV-SIPVLV--GGGVRSLEDATTLFRAGADKVSVN 105 (252)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCC-TT--THHHHHHHHHHHHHHC-SSCEEE--ESSCCSHHHHHHHHHHTCSEEEES
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccc-cc--ccccHHHHHHHHHhhc-CCccee--ecccchhhhhhhHhhcCCcEEEec
Confidence 46788899999999999999766542 21 1245567788887653 455544 456668999999999999999887
Q ss_pred hhc
Q 018731 214 IET 216 (351)
Q Consensus 214 ies 216 (351)
-..
T Consensus 106 s~~ 108 (252)
T d1h5ya_ 106 TAA 108 (252)
T ss_dssp HHH
T ss_pred ccc
Confidence 433
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.69 E-value=2.8 Score=32.70 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 138 ~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
++++++.+.|++.|.| |.+. .+.+.+.++.+ .+.+.+++ .++ .+.+.+...++.|+|.|+.|-
T Consensus 90 ~~~~~a~~~g~diImL-----DN~~---pe~~~~av~~i---~~~~~lEa--SGg-I~~~ni~~ya~~GVD~IS~ga 152 (167)
T d1qapa1 90 DELDDALKAGADIIML-----DNFN---TDQMREAVKRV---NGQARLEV--SGN-VTAETLREFAETGVDFISVGA 152 (167)
T ss_dssp HHHHHHHHTTCSEEEE-----SSCC---HHHHHHHHHTT---CTTCCEEE--CCC-SCHHHHHHHHHTTCSEEECSH
T ss_pred HHHHHHHhcCCcEEEe-----cCCC---HHHHHHHHHhc---CCceEEEE--eCC-CCHHHHHHHHHcCCCEEECCc
Confidence 3455556789998888 3454 46676665544 45667776 444 499999999999999998763
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=6.9 Score=32.17 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=80.0
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEeecCCCCCHHHHHHHHHcCCCeeecch
Q 018731 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (351)
Q Consensus 136 i~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~i 214 (351)
+.+.+..+.+.|+..|++ --++|...-..+++. .+++.. ..++++.. .++++++...+...+.+++-.
T Consensus 26 ~~~~a~~~~~~GadgITv--H~R~DrRHI~~~Dv~----~l~~~~~~~lNlE~a-----~~~e~i~ia~~~kP~qvtLVP 94 (242)
T d1m5wa_ 26 PVQAAFIAEQAGADGITV--HLREDRRHITDRDVR----ILRQTLDTRMNLEMA-----VTEEMLAIAVETKPHFCCLVP 94 (242)
T ss_dssp HHHHHHHHHTTTCSEEEE--ECCTTCSSSCHHHHH----HHHHHCSSEEEEEEC-----SSHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHHHcCCCeEEe--CCCCCccccchHHHH----HHHHHhhcccccccc-----cchhHHHHHHHhccceEEEee
Confidence 455666778899999877 223333221223333 344432 13566652 278999999999999999877
Q ss_pred hchHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeee
Q 018731 215 ETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (351)
Q Consensus 215 es~~~~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~ 283 (351)
|.-+++. +.-=+-....+.....++.+++ .|++|+..+= -. .+.++.++++|+|.|-++
T Consensus 95 e~r~elTTegGld~~~~~~~L~~~i~~l~~--~girvSLFiD----pd----~~~i~~a~~lGad~IElh 154 (242)
T d1m5wa_ 95 EKRQEVTTEGGLDVAGQRDKMRDACKRLAD--AGIQVSLFID----AD----EEQIKAAAEVGAPFIEIH 154 (242)
T ss_dssp CCSSCSSCCSCCCSGGGHHHHHHHHHHHHH--TTCEEEEEEC----SC----HHHHHHHHHTTCSEEEEE
T ss_pred cCccccCcCCceeehhhHHHHHHHHHHHHh--cCCeEEEEec----cc----hhhHHHHhhcCcceeeee
Confidence 7655532 1000012245677788999999 9998765432 22 345577789999999985
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.84 E-value=5.3 Score=32.30 Aligned_cols=150 Identities=18% Similarity=0.234 Sum_probs=84.2
Q ss_pred CchhHHHHHHHHHhCCCcEEEE--eccC-CCCCCCCcHHHHHHHHHHHHHhCCCc--EEEEeecCCCCCHHHHHHHHHcC
Q 018731 132 DPMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~l--tgg~-~~~l~~~~~~~~~~li~~ik~~~p~i--~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+...+.++++.+.+.|++.+.+ ..|. .+.+. .+ .+.++.+++. +++ .++..+.+ ....++.+.++|
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s-~g----~~~i~~i~~~-t~~~~dvHLMv~~---P~~~i~~~~~~g 82 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHIDIMDGQFVPNIS-FG----ADVVASMRKH-SKLVFDCHLMVVD---PERYVEAFAQAG 82 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBC-BC----HHHHHHHHTT-CCSEEEEEEESSS---GGGGHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccc-cC----HHHHHHHHhc-CCCceEeEEEecC---HHHHHHHHHHcC
Confidence 4556778888888899997765 4443 12222 11 3566777764 354 44445432 246899999999
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
.+.|.+..|+.+. . .+.++.+++ .|+.+ ++-+..+...+++...+. .+|.+.++ -.
T Consensus 83 a~~i~~H~E~~~~-----------~---~~~i~~i~~--~g~~~--Gial~p~T~~~~~~~~l~-----~id~vliM-~V 138 (217)
T d2flia1 83 ADIMTIHTESTRH-----------I---HGALQKIKA--AGMKA--GVVINPGTPATALEPLLD-----LVDQVLIM-TV 138 (217)
T ss_dssp CSEEEEEGGGCSC-----------H---HHHHHHHHH--TTSEE--EEEECTTSCGGGGGGGTT-----TCSEEEEE-SS
T ss_pred CcEEEeccccccC-----------H---HHHHHHHHh--cCCeE--EEEecCCcchhHHHhHHh-----hcCEEEEE-EE
Confidence 9999988877432 2 244567777 88864 444433444444433222 47778775 33
Q ss_pred CC-CCCcccccCCCCHHHHHHHHHHHHhcCc
Q 018731 287 QP-TPLHLTVKEYVTPEKFDFWKAYGESIGF 316 (351)
Q Consensus 287 ~P-Tp~~~~~~~~v~~~e~~~~~~~~~~~G~ 316 (351)
.| ...+ .......+...+++++..+.|+
T Consensus 139 ~pG~~Gq--~f~~~~~~ki~~l~~~~~~~~~ 167 (217)
T d2flia1 139 NPGFGGQ--AFIPECLEKVATVAKWRDEKGL 167 (217)
T ss_dssp CTTCSSC--CCCGGGHHHHHHHHHHHHHTTC
T ss_pred cCccccc--ccchhhHHHHHHHHHHHHhcCC
Confidence 45 2111 0111122344455555555554
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=83.65 E-value=4.5 Score=33.09 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=76.5
Q ss_pred CchhHHHHHHHHHhCCCcEEEE--eccCC-CCCCCCcHHHHHHHHHHHHHhCCC--cEEEEeecCCCCCHHHHHHHHHcC
Q 018731 132 DPMEPENTAKAIASWGVDYIVL--TSVDR-DDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSG 206 (351)
Q Consensus 132 ~~eei~~~~~~~~~~G~~~I~l--tgg~~-~~l~~~~~~~~~~li~~ik~~~p~--i~i~~~~~~~~~~~e~l~~L~~aG 206 (351)
+...+.+.++.+.+.|++.+.+ ..|.- +.+. .-.++++.+++. ++ +.+++.+.+ ....++.+.++|
T Consensus 21 d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t-----~~~~~v~~i~~~-t~~~~dvHLMv~~---P~~~i~~~~~~g 91 (230)
T d1rpxa_ 21 NFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNIT-----IGPLVVDSLRPI-TDLPLDVHLMIVE---PDQRVPDFIKAG 91 (230)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC-----CCHHHHHHHGGG-CCSCEEEEEESSS---HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCccCCcCCccc-----cChHHHhhhhhc-cCceeeeeeeecc---hhhhHHHHhhcc
Confidence 4567788888888889987655 44431 2222 113566677654 34 355555432 358899999999
Q ss_pred CCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 207 ~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
++.|.+..|+.+. .+.. +.++.+++ .|.. +++.+..+...+.+...+. .+|.+.++ -.
T Consensus 92 ~~~i~~H~E~~~~---------~~~~---~~i~~ik~--~g~k--~Gialnp~T~~~~l~~~l~-----~vD~VllM-~V 149 (230)
T d1rpxa_ 92 ADIVSVHCEQSST---------IHLH---RTINQIKS--LGAK--AGVVLNPGTPLTAIEYVLD-----AVDLVLIM-SV 149 (230)
T ss_dssp CSEEEEECSTTTC---------SCHH---HHHHHHHH--TTSE--EEEEECTTCCGGGGTTTTT-----TCSEEEEE-SS
T ss_pred cceeEEecccccc---------ccHH---HHHHHHHH--cCCe--EEEEeCCCCCHHHHHHHHh-----hCCEEEEE-Ee
Confidence 9999988775321 2333 44556677 7876 4444544554555544332 48888885 33
Q ss_pred CC
Q 018731 287 QP 288 (351)
Q Consensus 287 ~P 288 (351)
.|
T Consensus 150 ~P 151 (230)
T d1rpxa_ 150 NP 151 (230)
T ss_dssp CT
T ss_pred cC
Confidence 45
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=83.59 E-value=11 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCcE--EEEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 138 NTAKAIASWGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 138 ~~~~~~~~~G~~~--I~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
+..+.+.+.|-+. .+++.|+|+ .+.+.++++.+.+.
T Consensus 6 ~~f~~~~~~~~~~li~y~~aG~P~------~~~~~~~l~~l~~~ 43 (261)
T d1rd5a_ 6 DTMAALMAKGKTAFIPYITAGDPD------LATTAEALRLLDGC 43 (261)
T ss_dssp HHHHHHHHTTCCEEEEEEETTSSC------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCeEEEEEeCcCCC------HHHHHHHHHHHHHc
Confidence 3344444444332 255666542 35666666666665
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=1.9 Score=35.90 Aligned_cols=77 Identities=13% Similarity=0.252 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhC--CCCeEEEeeeeeC---CCCHHHHHHH
Q 018731 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSK--KGLITKSSIMLGL---GESDDDLKEA 268 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~--~Gi~v~~~~IvGl---gEt~e~~~~~ 268 (351)
.+++.+..|.++|+|.+-+|+-- .+.++..+.++.+++.. .|..+. ++..+ .-|+.|. +.
T Consensus 15 ~~~~~l~~li~aGvdv~RlN~SH------------g~~~~~~~~i~~ir~~~~~~~~~~~--I~~Dl~gp~ltekD~-~~ 79 (246)
T d1e0ta2 15 ESEEMLAKMLDAGMNVMRLNFSH------------GDYAEHGQRIQNLRNVMSKTGKTAA--ILLDTKGPALAEKDK-QD 79 (246)
T ss_dssp CSHHHHHHHHHHTEEEEEEETTS------------SCHHHHHHHHHHHHHHHHHHTCCCE--EEEECCCCSSCHHHH-HH
T ss_pred CCHHHHHHHHHCCCCEEEEECCC------------CCHHHHHHHHHHHHHHHHHcCCCCc--ccccccccccccCcc-hh
Confidence 37899999999999988665411 13333333333333211 344332 33333 4567775 56
Q ss_pred HHHHHhCCCCEEeeeccc
Q 018731 269 MADLRSIDVDILTLGQYL 286 (351)
Q Consensus 269 l~~l~~lg~d~i~i~~~l 286 (351)
+.+..+.|+|++.++ |.
T Consensus 80 i~~a~~~~vD~ialS-FV 96 (246)
T d1e0ta2 80 LIFGCEQGVDFVAAS-FI 96 (246)
T ss_dssp HHHHHHHTCSEEEES-SC
T ss_pred hhHHHHcCCCEEEEc-CC
Confidence 689999999999994 65
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=83.47 E-value=8.1 Score=32.12 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=67.1
Q ss_pred HHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHHH-H-hhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 173 VKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-Q-RIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 173 i~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~-~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
++..|+. +-.+.++|. -|...+..+-++|+|.+.+| +|+--. + ...+ ..-+.++.+.-.+..++..+.-.+
T Consensus 7 L~~~K~~--g~ki~~lTa---yd~~~A~~ae~agiDiilVG-DSlgm~~~G~~~T-~~vt~d~mi~h~~aV~rga~~~~~ 79 (260)
T d1o66a_ 7 LQKMKAA--GEKIAMLTA---YESSFAALMDDAGVEMLLVG-DSLGMAVQGRKST-LPVSLRDMCYHTECVARGAKNAMI 79 (260)
T ss_dssp HHHHHHH--TCCEEEEEC---CSHHHHHHHHHTTCCEEEEC-TTHHHHTTCCSSS-TTCCHHHHHHHHHHHHHHCSSSEE
T ss_pred HHHHHhC--CCcEEEEeC---CCHHHHHHHHHcCCCEEEEc-CCchheecCCCCc-cccchhhhhhhhHHHHccCcceee
Confidence 3445554 335555553 27788888999999999887 554332 2 1111 235788888777777664455557
Q ss_pred EEeeeeeC-CCCHHHHHHHHHHHHhCCCCEEee
Q 018731 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 251 ~~~~IvGl-gEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+++.+|- ..+.++..+...++.+.|+|.+.+
T Consensus 80 i~dmPf~sy~~~~~~~~~a~~~~~~~gadavk~ 112 (260)
T d1o66a_ 80 VSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKL 112 (260)
T ss_dssp EEECCTTSSSSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred ecchhhhhhcchhHHHHHHHHHHHHhhhhhccc
Confidence 77877777 666777777777777778776555
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=83.42 E-value=2.9 Score=37.14 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecc
Q 018731 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (351)
Q Consensus 134 eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ 213 (351)
.+..+.+..+.+.|++.+++.+.+. . ..++.++++.+++.+|++.|-+- + ..+.+....|.++|.|.|-++
T Consensus 150 ~~~~~ra~~L~~aG~D~ivID~AhG--~----s~~~~~~i~~ik~~~~~v~vIaG--N-V~T~e~a~~L~~~GaD~VkVG 220 (388)
T d1eepa_ 150 IDTIERVEELVKAHVDILVIDSAHG--H----STRIIELIKKIKTKYPNLDLIAG--N-IVTKEAALDLISVGADCLKVG 220 (388)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC--S----SHHHHHHHHHHHHHCTTCEEEEE--E-ECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhhccceeeeecccc--c----hHHHHHHHHHHHHHCCCCceeec--c-ccCHHHHHHHHhcCCCeeeec
Confidence 3445667778889999999965543 1 37899999999999998876431 1 238899999999999999876
Q ss_pred hhchHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeeeeeCCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 018731 214 IETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 214 ies~~~-~~~~~r~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i~~~l 286 (351)
+=...- ..+...+-+ ..+.-+.+..+.++. .+..+-++- | -.+.-|+.+.+ .+|.|.|.++..|
T Consensus 221 iGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~--~~vpiIADG--G-i~~~Gdi~KAl----a~GAd~VMlG~~l 286 (388)
T d1eepa_ 221 IGPGSICTTRIVAGVGVPQITAICDVYEACNN--TNICIIADG--G-IRFSGDVVKAI----AAGADSVMIGNLF 286 (388)
T ss_dssp SSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTT--SSCEEEEES--C-CCSHHHHHHHH----HHTCSEEEECHHH
T ss_pred cccccccccccccccCcchHHHHHHHHHHhcc--CCceEEecc--c-cCcCCceeeeE----Eeccceeecchhh
Confidence 543222 112222111 134444444555444 455544432 1 24566776665 5799999987655
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.26 E-value=2.7 Score=35.36 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=54.4
Q ss_pred ecCCCCCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHH
Q 018731 189 TSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKE 267 (351)
Q Consensus 189 ~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~ 267 (351)
.|.. .+++.+..|.++|+|.+-+|+--.+ .....++++.++.+.+...|-.+...+-+.. .-|+.|. +
T Consensus 28 GPas-~~~e~l~~li~aG~dv~RlN~SHg~---------~~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~-~ 96 (265)
T d1a3xa2 28 GPKT-NNPETLVALRKAGLNIVRMNFSHGS---------YEYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDK-E 96 (265)
T ss_dssp CTTT-CSHHHHHHHHHHTEEEEEEETTSCC---------HHHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHH-H
T ss_pred CCCC-CCHHHHHHHHHcCCCEEEEECCCCC---------HHHHHHHHHHHHHHhhhccCCceeeeccccchhcccchH-H
Confidence 3433 3799999999999998866531111 0123344555555544445665544433333 6777775 4
Q ss_pred HHHHHHhCCCCEEeeeccc
Q 018731 268 AMADLRSIDVDILTLGQYL 286 (351)
Q Consensus 268 ~l~~l~~lg~d~i~i~~~l 286 (351)
.+++..+.++|++.++ |.
T Consensus 97 di~~a~~~~vD~ialS-FV 114 (265)
T d1a3xa2 97 DLRFGVKNGVHMVFAS-FI 114 (265)
T ss_dssp HHHHHHHTTCCEECCT-TC
T ss_pred HHHHhhhcccceEeec-cC
Confidence 5689999999999994 64
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=82.94 E-value=7.5 Score=32.47 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.+.|++.+.++=-|.+- . .-+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+.+.++
T Consensus 26 ~~i~~l~~~Gv~Gi~v~GstGE~-~------~Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~st~~ai~~a~~A~~~ 95 (295)
T d1o5ka_ 26 RLVRYQLENGVNALIVLGTTGES-P------TVNEDEREKLVSRTLEIVDG---KIPVIVGAGTNSTEKTLKLVKQAEKL 95 (295)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTG-G------GCCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECeeccch-h------hCCHHHHHHHhhhhcccccc---CCceEeecccccHHHHHHHHHHHHHc
Confidence 55666667777776553212211 0 23555555555555542222 23456666 56677777777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 96 Gad~v~v 102 (295)
T d1o5ka_ 96 GANGVLV 102 (295)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 7776655
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=82.94 E-value=2.3 Score=35.84 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCcEE--EEeccCCCCCCCCcHHHHHHHHHHHHHh
Q 018731 137 ENTAKAIASWGVDYI--VLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (351)
Q Consensus 137 ~~~~~~~~~~G~~~I--~ltgg~~~~l~~~~~~~~~~li~~ik~~ 179 (351)
.+..+++...+-+-+ ++|+|+|+ .+...++++.+.+.
T Consensus 5 ~~~f~~lk~~~~~ali~y~t~G~P~------~~~~~~~~~~l~~~ 43 (267)
T d1qopa_ 5 ENLFAQLNDRREGAFVPFVTLGDPG------IEQSLKIIDTLIDA 43 (267)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTSSC------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCceEEEEEeCcCCC------HHHHHHHHHHHHHc
Confidence 344444444444432 56666652 35666666666554
|
| >d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Escherichia coli [TaxId: 562]
Probab=82.87 E-value=8.3 Score=32.20 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=64.4
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE-eecCCC---CC-HHHHHHHH--
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDFR---GD-LRAVETLV-- 203 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~p~i~i~~-~~~~~~---~~-~e~l~~L~-- 203 (351)
.+.+++.+.+..+...|++.|.+.+|+++.-.+....+-.++++.++... ...+.+ ..|.+. .+ +..++.|+
T Consensus 74 ~n~~~l~~~l~~~~~~GI~niL~l~GD~~~~~~~~~~~a~dlv~li~~~~-~~~igva~~Peghp~~~~~~~~~~~lk~K 152 (275)
T d1b5ta_ 74 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVA-DFDISVAAYPEVHPEAKSAQADLLNLKRK 152 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECCCCCCSSSCCCCCCHHHHHHHHHHHC-CCEEEEEECTTCCTTCSCHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHhhCeEEEecCCCCCCCCCCcccHHHHHHHHHHHH-hcCCceeecCCCCccchhHHHHHHHHHHH
Confidence 34677888888889999999998888864322211123456777777653 333332 123321 12 23334443
Q ss_pred -HcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC
Q 018731 204 -HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (351)
Q Consensus 204 -~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl 258 (351)
++|.+.+. +...++.+.+.+.++.+++ .|+. .-+++|+
T Consensus 153 ~~aGA~fii-------------TQ~~fD~~~~~~~~~~~~~--~gi~--~Pi~~GI 191 (275)
T d1b5ta_ 153 VDAGANRAI-------------TQFFFDVESYLRFRDRCVS--AGID--VEIIPGI 191 (275)
T ss_dssp HHHTCCEEE-------------EEECSCHHHHHHHHHHHHH--TTCC--SCEEEEE
T ss_pred HHhhcCeee-------------eeeeecHHHHHHHHHHHHH--cCCC--Ccccccc
Confidence 46887541 1124677777777878888 8874 3456666
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.37 E-value=8.7 Score=32.16 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeeeeeC-CCCHHHHHHHHHHHHhC
Q 018731 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (351)
Q Consensus 197 e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~IvGl-gEt~e~~~~~l~~l~~l 275 (351)
+.++.+.++|++.+.++--+.+- ..-+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+...++
T Consensus 32 ~~i~~li~~Gv~Gi~v~G~tGE~-------~~Ls~eEr~~l~~~~~~~~~~---~~~vi~g~~~~s~~~~i~~a~~a~~~ 101 (296)
T d1xxxa1 32 RLANHLVDQGCDGLVVSGTTGES-------PTTTDGEKIELLRAVLEAVGD---RARVIAGAGTYDTAHSIRLAKACAAE 101 (296)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTT-------TTSCHHHHHHHHHHHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECeeccch-------hhCCHHHHHHHHHHHHHHhcc---ccceEeccccchhHHHHHHHHHHHHh
Confidence 45666777777777653222111 123566666666655442222 12346677 66677777777777777
Q ss_pred CCCEEee
Q 018731 276 DVDILTL 282 (351)
Q Consensus 276 g~d~i~i 282 (351)
|+|.+.+
T Consensus 102 Gad~v~i 108 (296)
T d1xxxa1 102 GAHGLLV 108 (296)
T ss_dssp TCSEEEE
T ss_pred cCCeEEE
Confidence 7776655
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=81.69 E-value=8.6 Score=32.36 Aligned_cols=138 Identities=10% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCC-CC---C-CCCcHHHHHHHHHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHc
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DD---I-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~-~~---l-~~~~~~~~~~li~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~a 205 (351)
.++++..+.++.+.+.|+.-|-+.|... |. . .+.+++++..+++.+++.. ++.|.+ |. ...++++...++
T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~-~~~iSI---DT-~~~eVa~~al~~ 109 (282)
T d1ajza_ 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISV---DT-SKPEVIRESAKV 109 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEE---EC-CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcc-cceEEE---Ee-cChHHHHHHHhc
Confidence 4567788888889999999888866431 11 1 1234567888888887654 444433 22 267888888888
Q ss_pred CCCeeec--chhchHHHHhhh------------cC-CC-----CC--------HHHHHHHHHHHHHhCCCCe---EEEee
Q 018731 206 GLDVFAH--NIETVKRLQRIV------------RD-PR-----AG--------YEQSLEVLKHAKLSKKGLI---TKSSI 254 (351)
Q Consensus 206 G~~~i~~--~ies~~~~~~~~------------r~-~~-----~~--------~~~~l~~i~~~~~~~~Gi~---v~~~~ 254 (351)
|++.|+- +... +++.+.+ ++ |. .. .+...+.++.+.+ .|+. +-.|-
T Consensus 110 Ga~iINDvsg~~~-~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~--~GI~~~~IilDP 186 (282)
T d1ajza_ 110 GAHIINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQ--AGIAKEKLLLDP 186 (282)
T ss_dssp TCCEECCTTTTCS-TTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHH--TTCCGGGEEEEC
T ss_pred CceEEechhhccc-chhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHH--cCCcHhhEecCC
Confidence 8888762 1111 1111000 00 00 01 2445566777777 8983 55555
Q ss_pred eeeCCCCHHHHHHHHHHHHhCC
Q 018731 255 MLGLGESDDDLKEAMADLRSID 276 (351)
Q Consensus 255 IvGlgEt~e~~~~~l~~l~~lg 276 (351)
=+|||.|.++=.+.++.+..+.
T Consensus 187 GiGFgK~~~~n~~ll~~l~~~~ 208 (282)
T d1ajza_ 187 GFGFGKNLSHNYSLLARLAEFH 208 (282)
T ss_dssp CTTSSCCHHHHHHHHHTGGGGG
T ss_pred CcCcCCChhhhHHHHhhcchhh
Confidence 5677888887777777666553
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=80.60 E-value=4 Score=34.10 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEe-ecCCCCCHHHHHHHHHcCCC
Q 018731 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECL-TSDFRGDLRAVETLVHSGLD 208 (351)
Q Consensus 131 ~~~eei~~~~~~~~~~G~~~I~ltgg~~~~l~~~~~~~~~~li~~ik~~~-p~i~i~~~-~~~~~~~~e~l~~L~~aG~~ 208 (351)
.+++.+.+.++.+.+.|++.|.|..-..... ...+.++++.+++.. |++.+.+- +++.-+.-.-.-.-.++|++
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~~----P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~ 220 (289)
T d1nvma2 145 IPAEKLAEQGKLMESYGATCIYMADSGGAMS----MNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCD 220 (289)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECTTCCCC----HHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCC
T ss_pred cCchhhhHHHHhhccccceeeeecchhhccc----chhHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCc
Confidence 3567788888888899999999943322222 478999999999875 66655532 33322233344455689999
Q ss_pred eeecch
Q 018731 209 VFAHNI 214 (351)
Q Consensus 209 ~i~~~i 214 (351)
+|-.++
T Consensus 221 ~id~si 226 (289)
T d1nvma2 221 RVDASL 226 (289)
T ss_dssp EEEEBG
T ss_pred Eeeccc
Confidence 985443
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=80.48 E-value=5.8 Score=33.04 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHH---HHHHHHHHHHhCCCCeEEEee-eeeC-CCCHHHHHHH
Q 018731 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQ---SLEVLKHAKLSKKGLITKSSI-MLGL-GESDDDLKEA 268 (351)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~---~l~~i~~~~~~~~Gi~v~~~~-IvGl-gEt~e~~~~~ 268 (351)
.+++.+..|.++|+|.+-+|+-- .+.++ +++.++.+.+. .|..+...+ ..|. .-|..+. +.
T Consensus 32 ~~~~~l~~li~aGvdv~RiN~SH------------g~~e~~~~~i~~iR~~~~~-~g~~v~i~~d~~gp~~~t~kd~-~d 97 (258)
T d1pkla2 32 QSVEALKGLIQSGMSVARMNFSH------------GSHEYHQTTINNVRQAAAE-LGVNIAIALDTKGPPAVSAKDR-VD 97 (258)
T ss_dssp CSHHHHHHHHHHTEEEEEEETTS------------SCHHHHHHHHHHHHHHHHH-TTCCCEEEEECCCCCSSCHHHH-HH
T ss_pred CCHHHHHHHHHcCCCEEEEECCC------------CCHHHHHHHHHHHHHHHHH-hCCCccccccccccccccccHH-HH
Confidence 37899999999999988665311 13333 33333333211 454432221 3455 5666664 56
Q ss_pred HHHHHhCCCCEEeeeccc
Q 018731 269 MADLRSIDVDILTLGQYL 286 (351)
Q Consensus 269 l~~l~~lg~d~i~i~~~l 286 (351)
+.+..+.++|++.+ .|.
T Consensus 98 i~~a~~~~vD~ial-SFV 114 (258)
T d1pkla2 98 LQFGVEQGVDMIFA-SFI 114 (258)
T ss_dssp HHHHHHHTCSEEEE-TTC
T ss_pred HHHHHhcCCCeEEE-eCC
Confidence 78999999999999 465
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=80.31 E-value=3.6 Score=34.00 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCeeecchhchHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE-EEeeeeeC-CCC-------HHHHH
Q 018731 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT-KSSIMLGL-GES-------DDDLK 266 (351)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ies~~~~~~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v-~~~~IvGl-gEt-------~e~~~ 266 (351)
++.++..+++|++.|-+..... ...... ..+.++..+ .+.+ .|+.+ ......++ ... .+.+.
T Consensus 17 ~~~l~~a~~~Gf~~IEl~~~~~--~~~~~~--~~~~~~l~~---~l~~--~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (278)
T d1i60a_ 17 KLDLELCEKHGYDYIEIRTMDK--LPEYLK--DHSLDDLAE---YFQT--HHIKPLALNALVFFNNRDEKGHNEIITEFK 87 (278)
T ss_dssp HHHHHHHHHTTCSEEEEETTTH--HHHHTT--SSCHHHHHH---HHHT--SSCEEEEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCEEEeCCccc--cccccC--cccHHHHHH---HHHH--cCCcEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 5777888888888776532211 111121 334544333 3344 67763 33444444 322 23444
Q ss_pred HHHHHHHhCCCCEEee
Q 018731 267 EAMADLRSIDVDILTL 282 (351)
Q Consensus 267 ~~l~~l~~lg~d~i~i 282 (351)
..++.++.+|+..+.+
T Consensus 88 ~~i~~a~~lG~~~i~~ 103 (278)
T d1i60a_ 88 GMMETCKTLGVKYVVA 103 (278)
T ss_dssp HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCCcccc
Confidence 5666667777777665
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=80.29 E-value=13 Score=30.88 Aligned_cols=103 Identities=9% Similarity=0.079 Sum_probs=65.3
Q ss_pred HHHHHHhCCCcEEEEeecCCCCCHHHHHHHHHcCCCeeecchhchHH-HH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 018731 173 VKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (351)
Q Consensus 173 i~~ik~~~p~i~i~~~~~~~~~~~e~l~~L~~aG~~~i~~~ies~~~-~~-~~~r~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (351)
++..|+. +-.|.++|. -|-..+..+-++|+|.+.+| +|+-- ++ .... ..-+.++.+.-.+.+++..+.--+
T Consensus 7 L~~~K~~--g~ki~~lTa---yD~~~A~~~~~agvDiiLVG-DSlgmv~~G~~~T-~~vt~d~mi~H~~aV~rga~~~~v 79 (262)
T d1m3ua_ 7 LQKYKQE--KKRFATITA---YDYSFAKLFADEGLNVMLVG-DSLGMTVQGHDST-LPVTVADIAYHTAAVRRGAPNCLL 79 (262)
T ss_dssp HHHHHHH--TCCEEEEEC---CSHHHHHHHHHHTCCEEEEC-TTHHHHTTCCSSS-TTCCHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHhC--CCcEEEEEc---CCHHHHHHHHHCCCCEEEEc-CcHHhcccCCCCc-ceechHhHHHHHHHHHhcccccee
Confidence 4455654 335555553 26778888889999999876 34322 22 1111 245778877777766654445557
Q ss_pred EEeeeeeCCCCHHHHHHHHHHHHhCCCCEEee
Q 018731 251 KSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (351)
Q Consensus 251 ~~~~IvGlgEt~e~~~~~l~~l~~lg~d~i~i 282 (351)
.+++.+|--++.++..+....+.+.|+|.|-+
T Consensus 80 v~DmPf~sy~~~~~a~~~a~~l~~~GAdaVKl 111 (262)
T d1m3ua_ 80 LADLPFMAYATPEQAFENAATVMRAGANMVKI 111 (262)
T ss_dssp EEECCTTSSSSHHHHHHHHHHHHHTTCSEEEC
T ss_pred EeccccccchhhHHHHHHHHHHHhcCCcEEEe
Confidence 77777777567777777777777788776654
|