Citrus Sinensis ID: 018746

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNHIAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLNDLKLDDHEDTDMF
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHccccccccccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mgrppccdkigikkgpwtpeEDIILVSYIQehgpgnwravptntgllrcskscRLRWtnylrpgikrgnftdQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAaagcsednsqYRDELASASSQQISRGQWERRLQTDIHMAKQALCAAlspdkasilselkpangfisytkpavqapayassTENIAKLLKGWTRnaqksassnsgvtdqnsinnnvnhiagaesasseetpskvasnSTAIELSEAFESLfgfesfdssnstdlsqsvtpessafqdyeskqllldpsagadddqmpqLSLLEKWLfddqggkdylndlklddhedtdmf
Flexible Loop (DISEMBL)
mgrppccdkigikkgpwtpeEDIILVSYIQEhgpgnwravptntgllrcSKSCRLRWtnylrpgikrgnftdqEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSassnsgvtdqnsINNNVNHIAGAesasseetpsKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLndlklddhedtdmf
Low Complexity Region (SEG)
MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHlkkkvkklqlaaaGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNHIAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLNDLKLDDHEDTDMF
Disordered region (IsUnstruct)
*****CCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA*****************************LQTDIHMAKQALCAALSPDKASILSELKPANGFISYTKPAVQAPAYA****NIAKLLKG*************************************************************************************************************LLEKWLFDDQGGKDYL**************
Disordered Region (DISOPRED)
*GRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK**************************************************************************************************************************************************************GF*SF*******************************************SLLEKWLFDDQGG******************
Disordered Region (DISEMBL)
MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA**************************ERRLQTDIHMAKQALCAALSPDKASILSELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWT*************TDQNSINNNVNHIAG*****************TAIELSEAFESLFGFESF********************DYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLNDLKLDDHEDTDMF
Disordered Region (DISPRO)
***PPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKL******************************WERRLQTDIHMAKQALCAALSP********************************ENIAKLLKGWTRN***************************************************************************************************QMPQLSLLEKWLFDDQGGKDYLNDLKL********F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNHIAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLNDLKLDDHEDTDMF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
P81392	316	Myb-related protein 306 O	N/A	no	0.846	0.939	0.581	3e-92
Q7XBH4	257	Myb-related protein Myb4	no	no	0.330	0.451	0.706	7e-49
P20024	340	Myb-related protein Zm1 O	N/A	no	0.353	0.364	0.637	1e-45
P27898	399	Myb-related protein P OS=	N/A	no	0.330	0.290	0.629	8e-43
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.344	0.411	0.628	3e-42
Q8GWP0	360	Transcription factor MYB3	no	no	0.344	0.336	0.614	3e-42
Q38851	236	Transcription repressor M	no	no	0.398	0.593	0.551	6e-42
Q9SPG2	366	Transcription factor MYB2	no	no	0.330	0.316	0.620	7e-42
P80073	421	Myb-related protein Pp2 O	N/A	no	0.333	0.277	0.623	2e-41
O22264	371	Transcription factor MYB1	no	no	0.339	0.320	0.596	2e-41

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  338 bits (868), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/337 (58%), Positives = 228/337 (67%), Gaps = 40/337 (11%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWRA+P+NTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRG+FT+ EEKMIIHLQALLGNRWAAIASYL  RTDNDIKNYWNTHLKKK++KLQ
Sbjct: 61  LRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSEL 180
               G  +D +      +  S + +S+GQWERRLQTDIHMAKQALC ALS DK S  ++ 
Sbjct: 121 SPENGKCQDGNS-----SVDSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSSTD- 174

Query: 181 KPANGFISYTKP-AVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNH 239
            P    +  T+P   QA  Y SS ENIA+LL+ W + +  +ASS S      S   + N+
Sbjct: 175 DPKLSTVQTTQPRPFQASTY-SSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFNY 233

Query: 240 IAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSA---- 295
            +   S SS   PS+ A ++              F SF+SSNS  L      +  A    
Sbjct: 234 PSVCLSTSS---PSEGAIST-------------NFISFNSSNSDILEDHDQAKFEAATNG 277

Query: 296 --FQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDD 330
             FQD ESK +L        D+QMP LSLLEKWL DD
Sbjct: 278 VNFQD-ESKPIL--------DNQMP-LSLLEKWLLDD 304

Transcription factor.
Antirrhinum majus (taxid: 4151)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  194 bits (494), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 97/116 (83%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K+G+KKGPWTPEED +LV++IQ HG GNWRA+P   GLLRC KSCRLRW NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116
           LRP IKRGNF+ +EE  IIHL  LLGNRW+AIA+ L  RTDN+IKN W+THLKK++
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 97/124 (78%)

Query: 2   GRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
           GR PCC K+G+ +G WTP+ED+ L++YIQ+HG  NWRA+P   GLLRC KSCRLRW NYL
Sbjct: 4   GRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYL 63

Query: 62  RPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQL 121
           RP +KRGNFTD+EE+ II L  LLGN+W+ IA+ L  RTDN+IKN WNTHLKKKV + + 
Sbjct: 64  RPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREK 123

Query: 122 AAAG 125
             AG
Sbjct: 124 KKAG 127

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|P27898|MYBP_MAIZE Myb-related protein P OS=Zea mays GN=P PE=2 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 93/116 (80%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K+G+K+G WT EED +L +YI EHG G+WR++P N GLLRC KSCRLRW NY
Sbjct: 1   MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116
           LR  +KRGN + +EE +II L A LGNRW+ IAS+L  RTDN+IKNYWN+HL +++
Sbjct: 61  LRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 116

Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Zea mays (taxid: 4577)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 94/121 (77%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCCDK+G+KKGPWT EED  L+S+I  +G   WRAVP   GL RC KSCRLRWTNY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRP +KRG  +D EEK++I L + LGNRW+ IA+ L  RTDN+IKN+WNTH+KKK+ K+ 
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120

Query: 121 L 121
           +
Sbjct: 121 I 121

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 94/122 (77%), Gaps = 1/122 (0%)

Query: 1   MGRPPCCDK-IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTN 59
           MGR PCCD+  G+KKGPW PEED  L +YI E+G GNWR++P   GL RC KSCRLRW N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 60  YLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKL 119
           YLRP I+RG F+D EE  I+ L ALLGN+W+ IA +L  RTDN+IKNYWNTH++KK+ ++
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120

Query: 120 QL 121
            +
Sbjct: 121 GI 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/145 (55%), Positives = 100/145 (68%), Gaps = 5/145 (3%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K    KG WT EED  LV YI+ HG G WR++P + GLLRC KSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRP +KRGNFTD E+++II L +LLGN+W+ IA  L  RTDN+IKNYWNTH+K+K     
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK----- 115

Query: 121 LAAAGCSEDNSQYRDELASASSQQI 145
           L + G      +  +E  + SSQ +
Sbjct: 116 LLSHGIDPQTHRQINESKTVSSQVV 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 88/116 (75%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           M R PCC   G+KKG WT EED  L+SYI +HG G WR +P   GL RC KSCRLRWTNY
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116
           L+P IKRG F+ +EE++II L A  GN+W+ IA +L +RTDN+IKNYWNTHLKK++
Sbjct: 61  LKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRL 116

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 92/117 (78%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K+G+++GPWT EED  LVS+I  +G   WRA+P   GLLRC KSCRLRWTNY
Sbjct: 1   MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVK 117
           LRP +KRG F++ EE +I+ L A LGNRW+ IA+ L  RTDN+IKNYWNT LKK+++
Sbjct: 61  LRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLR 117

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|O22264|MYB12_ARATH Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 92/119 (77%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K+GIK+G WT EED IL +YIQ +G G+WR++P N GL RC KSCRLRW NY
Sbjct: 1   MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKL 119
           LR  +KRGN T +EE++++ L + LGNRW+ IA +L  RTDN+IKNYWN+HL +K+   
Sbjct: 61  LRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNF 119

Transcription factor that activates the expression of CHS, CHI, F3H and FLS1. Flavonol-specific activator of flavonoid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
117957141	351	MYB60-like protein [Citrus macrophylla]	1.0	1.0	0.977	0.0
225452821	327	PREDICTED: myb-related protein 306 isofo	0.917	0.984	0.674	1e-114
224140977	322	predicted protein [Populus trichocarpa]	0.897	0.978	0.659	1e-113
224080197	310	predicted protein [Populus trichocarpa]	0.866	0.980	0.658	1e-111
296082918	307	unnamed protein product [Vitis vinifera]	0.863	0.986	0.650	1e-108
302398933	342	MYB domain class transcription factor [M	0.937	0.961	0.604	1e-104
356550823	333	PREDICTED: myb-related protein 306 [Glyc	0.905	0.954	0.6	1e-101
87240347	325	Homeodomain-related [Medicago truncatula	0.860	0.929	0.626	1e-100
358248538	334	MYB transcription factor MYB60 [Glycine	0.900	0.946	0.602	1e-100
73761705	307	myb transcription factor MYB30 [Gossypiu	0.851	0.973	0.608	3e-99

>gi|117957141|gb|ABK59039.1| MYB60-like protein [Citrus macrophylla]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/351 (97%), Positives = 344/351 (98%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYL QRTDNDIKNYWNTHLKKKVKKLQ
Sbjct: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVKKLQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSEL 180
           LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSEL
Sbjct: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSEL 180

Query: 181 KPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNHI 240
           KPANGFISYTKPAVQAP YASSTENIAKLLKGW RNAQKSASSNSGVTDQNSINNNVNHI
Sbjct: 181 KPANGFISYTKPAVQAPTYASSTENIAKLLKGWARNAQKSASSNSGVTDQNSINNNVNHI 240

Query: 241 AGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDYE 300
           AGAESASSEETPSKVASNST IELSEAFESLFGFESFDSSNSTDLSQSVTPESS FQDYE
Sbjct: 241 AGAESASSEETPSKVASNSTGIELSEAFESLFGFESFDSSNSTDLSQSVTPESSTFQDYE 300

Query: 301 SKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLNDLKLDDHEDTDMF 351
           SKQLLLDPSA ADDDQMPQLSL+EKWLFDDQG KDYLNDLKLDDHEDTDMF
Sbjct: 301 SKQLLLDPSASADDDQMPQLSLIEKWLFDDQGAKDYLNDLKLDDHEDTDMF 351

Source: Citrus macrophylla

Species: Citrus macrophylla

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452821|ref|XP_002283575.1| PREDICTED: myb-related protein 306 isoform 1 [Vitis vinifera]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/350 (67%), Positives = 269/350 (76%), Gaps = 28/350 (8%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFTD EE+MIIHLQALLGNRWAAIASYL QRTDNDIKNYWNTHLKKK+KKLQ
Sbjct: 61  LRPGIKRGNFTDHEERMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILS-E 179
               G S D    RD   S +SQ ISRGQWERRLQTDIHMAKQAL  ALS +K    S +
Sbjct: 121 ---TGSSSDG-HSRD--VSLASQSISRGQWERRLQTDIHMAKQALHEALSLEKPHSSSDQ 174

Query: 180 LKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNH 239
           L P NG+ + T+P  QA +YASSTENIA+LL+GW RN+ K A ++S  T  + IN     
Sbjct: 175 LNPTNGYQTCTRPG-QASSYASSTENIARLLEGWMRNSPKQARASSATTQNSFIN----- 228

Query: 240 IAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDY 299
            AG +S SSE TPS  A+N+  IEL+EA+E LFGF+S DSSNS ++SQS +PE+S FQ+ 
Sbjct: 229 TAGTDSTSSEGTPS--AANNEDIELTEAYEMLFGFDSLDSSNS-EISQSKSPEASFFQE- 284

Query: 300 ESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQG--GKDYLNDLKLDDHED 347
           ESK  L         DQ+P LS LEKWLF++ G  GK+ L D+ LD+  D
Sbjct: 285 ESKPDL--------SDQVP-LSFLEKWLFEEGGAQGKEDLTDISLDESPD 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140977|ref|XP_002323853.1| predicted protein [Populus trichocarpa] gi|222866855|gb|EEF03986.1| predicted protein [Populus trichocarpa]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/347 (65%), Positives = 267/347 (76%), Gaps = 32/347 (9%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWRAVPT+TGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFTD EEKMIIHLQALLGNRWAAIASYL QRTDNDIKN+WNTHLKKK++KLQ
Sbjct: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNFWNTHLKKKLRKLQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDK-ASILSE 179
               G      Q RD L+S  SQQISRGQWERRLQTDI+MA+QALC ALSP K +S+L+ 
Sbjct: 121 AGQEG------QSRDGLSSTGSQQISRGQWERRLQTDINMARQALCEALSPGKPSSLLTG 174

Query: 180 LKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNH 239
           LKP+ G   Y KPA + P YASSTENI++LLKGW  +  K +  NS  T QNS  +    
Sbjct: 175 LKPSCG---YEKPATE-PIYASSTENISRLLKGWMISGPKQSLKNS--TTQNSFIDT--- 225

Query: 240 IAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDY 299
            AGA+S SSE TP K   N T   LS+AFESLFG      S+++D SQS++P++  FQD 
Sbjct: 226 -AGADSLSSEGTPDKADKNGTG--LSQAFESLFG-FDSFDSSNSDFSQSMSPDTGLFQD- 280

Query: 300 ESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQG--GKDYLNDLKLDD 344
           ESK     P++ A   Q+P LSL+E+WLFD+    GKDY+N++ +D+
Sbjct: 281 ESK-----PNSSA---QVP-LSLIERWLFDEGAMQGKDYINEVTIDE 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080197|ref|XP_002306049.1| predicted protein [Populus trichocarpa] gi|222849013|gb|EEE86560.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/348 (65%), Positives = 260/348 (74%), Gaps = 44/348 (12%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIG+ KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVMKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFT  EEKMIIHLQALLGNRWAAIASYL QRTDNDIKNYWNTHL KK+KKLQ
Sbjct: 61  LRPGIKRGNFTHNEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHL-KKLKKLQ 119

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKA-SILSE 179
               G                S+QISRGQWERRLQTDIHMA+QAL  ALSP+K  S+L+E
Sbjct: 120 AGQEG---------------QSRQISRGQWERRLQTDIHMARQALSEALSPEKPNSLLTE 164

Query: 180 LKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNH 239
           LKP+ G   Y KPA  A  YASSTENIAKLLKGW R+    + +NS  T QNS NN    
Sbjct: 165 LKPSCG---YEKPA-PASLYASSTENIAKLLKGWMRSGPNQSLTNS-TTTQNSFNN---- 215

Query: 240 IAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDY 299
           +A A+S SSEET ++   N T  ELSEAFESLFG   FDSSN  D SQS +P++   QD 
Sbjct: 216 MAVADSFSSEETLNRADENDT--ELSEAFESLFG---FDSSN-IDFSQSTSPDTGLLQD- 268

Query: 300 ESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQG--GKDYLNDLKLDDH 345
           ESK     P++ A   Q+P LS++E+WLFD+    GK+YL+++  D++
Sbjct: 269 ESK-----PNSSA---QVP-LSVIERWLFDEGAMQGKEYLSEVTPDEN 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082918|emb|CBI22219.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 256/349 (73%), Gaps = 46/349 (13%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFTD EE+MIIHLQALLGNRWAAIASYL QRTDNDIKNYWNTHLKKK+KKLQ
Sbjct: 61  LRPGIKRGNFTDHEERMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSEL 180
               G S D    RD   S +SQ ISRGQWERRLQTDIHMAKQAL  ALS +K       
Sbjct: 121 ---TGSSSDG-HSRD--VSLASQSISRGQWERRLQTDIHMAKQALHEALSLEKP------ 168

Query: 181 KPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNHI 240
                            +YASSTENIA+LL+GW RN+ K A ++S  T  + IN      
Sbjct: 169 --------------HTSSYASSTENIARLLEGWMRNSPKQARASSATTQNSFINT----- 209

Query: 241 AGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDYE 300
           AG +S SSE TPS  A+N+  IEL+EA+E LFGF+S DSSNS ++SQS +PE+S FQ+ E
Sbjct: 210 AGTDSTSSEGTPS--AANNEDIELTEAYEMLFGFDSLDSSNS-EISQSKSPEASFFQE-E 265

Query: 301 SKQLLLDPSAGADDDQMPQLSLLEKWLFDDQG--GKDYLNDLKLDDHED 347
           SK  L         DQ+P LS LEKWLF++ G  GK+ L D+ LD+  D
Sbjct: 266 SKPDL--------SDQVP-LSFLEKWLFEEGGAQGKEDLTDISLDESPD 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398933|gb|ADL36761.1| MYB domain class transcription factor [Malus x domestica]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/364 (60%), Positives = 258/364 (70%), Gaps = 35/364 (9%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDK G+KKGPWTPEEDIILVSYIQE GPGNWRAVPTNTGL RCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKEGVKKGPWTPEEDIILVSYIQERGPGNWRAVPTNTGLHRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYL QRTDNDIKNYWNTHL+KK+ KLQ
Sbjct: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLSKLQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASIL-SE 179
            A  G    +S+ +   +++SSQ ISRGQWERRLQTDIHMA+QAL  ALSP+K   L S+
Sbjct: 121 AAGGGTEGLHSKDQGLNSNSSSQPISRGQWERRLQTDIHMARQALRDALSPEKPLTLSSD 180

Query: 180 LKPANGF--ISYTKPAV---QAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSIN 234
           L P +GF   S  KP++    +  YASSTENI++LLKGW +N  K ++         S  
Sbjct: 181 LNPTDGFSISSPKKPSLDQSSSSTYASSTENISRLLKGWMKNPPKKSA---------SFT 231

Query: 235 NNVNHIAGAESASSEETPSKVA--SNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPE 292
           N  N+    +  SS E  + VA  +NS  +ELS+ FESLFGFES +S     LS S++PE
Sbjct: 232 NLANNKTDYQHYSSSEGTTSVANTANSGNVELSDTFESLFGFESSNSY----LSPSMSPE 287

Query: 293 SSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQG-----GKDYLNDLKLDDHED 347
           +S FQ  ESK  L+        D++P LS LEKWLFD+       GKD+     L DH +
Sbjct: 288 ASLFQG-ESKPDLI-------SDKLP-LSFLEKWLFDESASPAALGKDHFFSDMLPDHGN 338

Query: 348 TDMF 351
            + F
Sbjct: 339 ANFF 342

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550823|ref|XP_003543783.1| PREDICTED: myb-related protein 306 [Glycine max]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/350 (60%), Positives = 247/350 (70%), Gaps = 32/350 (9%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDK G+KKGPWTPEEDIILVSYIQEHGP NW+AVP NTGL RCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPSNWKAVPANTGLSRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIA+YL QRTDNDIKNYWNT+LKKK+ KL 
Sbjct: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKL- 119

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSEL 180
                  E  S     +  + SQ +SRGQWERRLQTDI MAK+AL  ALS +KAS  S L
Sbjct: 120 -------EAGSDQGHNIGVSVSQPMSRGQWERRLQTDIRMAKRALIEALSSNKASSSSTL 172

Query: 181 KPA--------NGFISY----TKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVT 228
             A           I Y     KP  Q+  YASS +NIA+LLKGW +N  K AS  +   
Sbjct: 173 LLAESNSNLSSENSIFYNSNTNKPTTQSMCYASSADNIARLLKGWMKNTPKLASCAASAV 232

Query: 229 DQNSINNNVNHIAGAESASSEET-PSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQ 287
            QNS NN    +AGA++A SE    +K +++++ +ELSE F+SLFG+ES D S++++ S 
Sbjct: 233 TQNSFNN----LAGADTAFSEGITTTKGSTSTSTVELSETFDSLFGYESLDYSSNSEFSP 288

Query: 288 SVTPESSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYL 337
           S++PE++ FQD ESK     P   AD   MP  SLLEKWL DD   ++ L
Sbjct: 289 SLSPEATPFQD-ESK-----PDITADGIDMP-FSLLEKWLLDDAACQEKL 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87240347|gb|ABD32205.1| Homeodomain-related [Medicago truncatula] gi|124360953|gb|ABN08925.1| Homeodomain-related [Medicago truncatula]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/335 (62%), Positives = 238/335 (71%), Gaps = 33/335 (9%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDK G+KKGPWTPEEDIILV+YIQEHGPGNWRAVPT TGL RCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFT+QEEKMIIHLQ LLGNRWAAIASYL QRTDNDIKNYWNTHLKKK+KK Q
Sbjct: 61  LRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKSQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASI-LSE 179
               G + +   + +E  SA SQ+I RGQWERRLQTDI MAK+AL  ALSP K S   S 
Sbjct: 121 ---TGNNAECINFEEEKFSA-SQRIPRGQWERRLQTDIQMAKKALNEALSPQKLSPNFST 176

Query: 180 LKPAN-GFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVN 238
             P N    S TK   Q+  YASS +NIA+LLKGW +N  KS+ S + V  QNS NN   
Sbjct: 177 SNPTNSNSFSSTKEPGQSFCYASSADNIARLLKGWMKNPIKSSVSTNSVVTQNSFNN--- 233

Query: 239 HIAGAESASSEETPSKVASNSTAIELSEAFESLFGF---ESFDSSNSTDLSQSVTPESSA 295
                +SASS  T  ++        LSE FESLFGF   ES +SSNS    QS++P+++ 
Sbjct: 234 ----FDSASSSGTKGEI--------LSETFESLFGFEPLESLESSNSEFSHQSLSPDATI 281

Query: 296 FQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDD 330
            QD ESK     P  G+  + MP  SLLEKWL D+
Sbjct: 282 LQD-ESK-----PDVGS--ETMP-FSLLEKWLLDE 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248538|ref|NP_001240154.1| MYB transcription factor MYB60 [Glycine max] gi|255635570|gb|ACU18135.1| unknown [Glycine max]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/345 (60%), Positives = 245/345 (71%), Gaps = 29/345 (8%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDK G+KKGPWTPEEDIILVSYIQEHGPGNWRAVP  TGL RCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLSRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGIKRGNFT+QEEKMIIHLQ LLGNRWAAIASYL QRTDNDIKNYWNTHL+KK+KK+Q
Sbjct: 61  LRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASI---- 176
           +   G S            ++S+QI RGQWERRLQTDI MAK+AL  ALSP+K S     
Sbjct: 121 VGCEGGSFGE-------GFSASRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCNLSA 173

Query: 177 -LSELKPANGFISYTKP-AVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSIN 234
             S    ++   S TKP   Q   YASS +NIA++LKGW +N  KS+ +NS    QNS N
Sbjct: 174 SNSNPSDSSSSFSSTKPTTTQTVCYASSADNIARMLKGWMKNPPKSSRTNSSSVTQNSFN 233

Query: 235 NNVNHIAGAESASSEETPSKVASNSTAIELSE-AFESLFGF-ESFDSSNSTDLSQSVTPE 292
           N     AGA++ASS           ++ ELSE  FESLF F +S +SSNS + S+S++PE
Sbjct: 234 NFA--AAGADTASS----IGAKGPPSSAELSENNFESLFDFDQSLESSNSDEFSRSLSPE 287

Query: 293 SSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYL 337
           ++  QD ESK  ++    GA  + MP  SLLEKWL D+ G ++ L
Sbjct: 288 ATVLQD-ESKPDVI----GA--EIMP-FSLLEKWLLDEAGCQEKL 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|73761705|gb|AAZ83352.1| myb transcription factor MYB30 [Gossypium hirsutum]

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 210/345 (60%), Positives = 246/345 (71%), Gaps = 46/345 (13%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCCDK+G+KKGPWTPEED+ILVSYIQ+HGPGNWRAVPT TGLLRCSKSCRLRW NY
Sbjct: 1   MGRQPCCDKVGVKKGPWTPEEDLILVSYIQQHGPGNWRAVPTKTGLLRCSKSCRLRWANY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           LRPGI+RGNFT+ EEKMIIHLQALLGNRWAAIASYL +RTDNDIKNYWNTHLK+K+KKLQ
Sbjct: 61  LRPGIRRGNFTENEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKRKLKKLQ 120

Query: 121 LAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSEL 180
                 +E +S+Y    +S+SS QI RGQWER+LQTDIHMAK+ L  ALSP+K+S L E+
Sbjct: 121 -----GNESSSRYGFP-SSSSSYQICRGQWERKLQTDIHMAKKDLSDALSPEKSSDLVEM 174

Query: 181 KPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNHI 240
           KP N   SY KP+     YASSTENIAKLLKGW RN                     N  
Sbjct: 175 KPFNDHTSYPKPS----GYASSTENIAKLLKGWMRN---------------------NPW 209

Query: 241 AGAESAS-SEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPESSAFQDY 299
             A+SA  SEE    +  +  + E++EAF+S  GFES   S+ +D+S S++PE+S  Q Y
Sbjct: 210 KMADSADYSEEGTVPMKEDKNSKEMAEAFQSHLGFES-LDSSLSDISPSMSPETSLSQ-Y 267

Query: 300 ESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDY-LNDLKLD 343
           ESK  L         +   QLSLLEKWLFD+  GKDY L D+ LD
Sbjct: 268 ESKPHL---------NAQSQLSLLEKWLFDE--GKDYQLCDITLD 301

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2154119	352	MYB96 "myb domain protein 96"	0.903	0.900	0.508	9e-77
TAIR|locus:2090764	323	MYB30 "myb domain protein 30"	0.720	0.783	0.580	7.3e-75
TAIR|locus:2019185	330	MYB31 "myb domain protein 31"	0.829	0.881	0.504	1.7e-73
TAIR|locus:2079182	333	MYB94 "myb domain protein 94"	0.920	0.969	0.484	5.3e-72
TAIR|locus:2025565	280	MYB60 "myb domain protein 60"	0.316	0.396	0.936	6.7e-70
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.863	0.929	0.369	2.7e-45
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.316	0.317	0.675	4.1e-45
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.441	0.399	0.535	6.4e-44
TAIR|locus:2086233	285	MYB15 "myb domain protein 15"	0.316	0.389	0.684	2e-43
TAIR|locus:2098906	299	MYB17 "myb domain protein 17"	0.316	0.371	0.711	4.5e-43

TAIR|locus:2154119 MYB96 "myb domain protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 178/350 (50%), Positives = 216/350 (61%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCC+KIG+KKGPWTPEEDIILVSYIQEHGPGNWR+VPT+TGL RCSKSCRLRWTNY
Sbjct:     1 MGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHXXXXXXXXX 120
             LRPGIKRGNFT+ EEK I+HLQALLGNRWAAIASYL +RTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTEHEEKTIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKIN 120

Query:   121 XXXXGCSEDNSQYRDELASASS--QQISRGQWERRLQTDIHMAKQALCAALSPDKASILS 178
                    EDN        S+    Q  ++GQWERRLQTDI+MAKQALC ALS DK S  S
Sbjct:   121 ESG---EEDNDGVSSSNTSSQKNHQSTNKGQWERRLQTDINMAKQALCEALSLDKPS--S 175

Query:   179 ELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSIN---- 234
              L  ++   S   P +       +  N +  L     +   S+SS +  T  N+ N    
Sbjct:   176 TLSSSS---SLPTPVITQ----QNIRNFSSALLDRCYDPSSSSSSTTTTTTSNTTNPYPS 228

Query:   235 ----NNVNHIAGAESASSEETPSKVA-SNSTAIE----LSEAF--ESLFGFE-SFDSSNS 282
                 ++  +IA       ++TP  +  S+S+ +     L+ A   E   GFE SF S NS
Sbjct:   229 GVYASSAENIARLLQDFMKDTPKALTLSSSSPVSETGPLTAAVSEEGGEGFEQSFFSFNS 288

Query:   283 TDLSQSVTPESSAFQDYESK-QLLLDPSAGADDDQMPQLSLLEKWLFDDQ 331
              D +Q++T E+S F D   K ++ +D   G        LSL EKWLFD+Q
Sbjct:   289 MDETQNLTQETSFFHDQVIKPEITMDQDHGLISQG--SLSLFEKWLFDEQ 336

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2090764 MYB30 "myb domain protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 155/267 (58%), Positives = 184/267 (68%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             M RPPCCDK G+KKGPWTPEEDIILV+YIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY
Sbjct:     1 MVRPPCCDKGGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHXXXXXXXXX 120
             LRPGIKRGNFT+ EEKMI+HLQALLGNRWAAIASYL QRTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTEHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKVN 120

Query:   121 XXXXGCSEDNSQYRDELASA--SSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILS 178
                    + +S      +S+  S+  ISRGQWERRLQTDIH+AK+AL  ALSP  A I++
Sbjct:   121 QDSHQELDRSSLSSSPSSSSANSNSNISRGQWERRLQTDIHLAKKALSEALSPAVAPIIT 180

Query:   179 ----------ELKPANGFIS-YTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGV 227
                       E + +    S + +    +  YASSTENIAKLLKGW +N+ K+ +S   +
Sbjct:   181 STVTTTSSSAESRRSTSSASGFLRTQETSTTYASSTENIAKLLKGWVKNSPKTQNSADQI 240

Query:   228 TDQNSINNNVNHIAGAESASSEETPSK 254
                  +   +    G E A + ++ S+
Sbjct:   241 AS-TEVKEVIKSDDGKECAGAFQSFSE 266

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2019185 MYB31 "myb domain protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 159/315 (50%), Positives = 197/315 (62%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCC+KI +KKGPWTPEEDIILVSYIQ+HGPGNWR+VP NTGLLRCSKSCRLRWTNY
Sbjct:     1 MGRPPCCEKIEVKKGPWTPEEDIILVSYIQQHGPGNWRSVPANTGLLRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHXXXXXXXXX 120
             LRPGIKRGNFT  EEKMIIHLQALLGNRWAAIASYL QRTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTQPEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLVMMK 120

Query:   121 XXXXGCSEDNSQYRDELASASSQQ---------ISRGQWERRLQTDIHMAKQALCAALSP 171
                   +E+ +    +++S ++            ++GQWE++LQTDI+MAKQAL  ALS 
Sbjct:   121 FQNGIINENKTNLATDISSCNNNNNGCNHNKRTTNKGQWEKKLQTDINMAKQALFQALSL 180

Query:   172 DKASILSELKPANGFISYTKPAVQAPA-YASSTENIAKLLKGWTRNAQKSASSNSGVTDQ 230
             D+ S L    P +      KP   +   YASST+NI+KLL+ WT       SS+S   + 
Sbjct:   181 DQPSSLIPPDPDS-----PKPHHHSTTTYASSTDNISKLLQNWT-------SSSSSKPNT 228

Query:   231 NSINNNVNHIAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVT 290
             +S++NN +   G          S  +SNS +  + E    +     F   +  D+    T
Sbjct:   229 SSVSNNRSSSPGEGGLFDHH--SLFSSNSESGSVDEKLNLMSETSMFKGESKPDIDMEAT 286

Query:   291 PESSAFQDYESKQLL 305
             P ++   D  S  L+
Sbjct:   287 PTTTTTDDQGSLSLI 301

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2079182 MYB94 "myb domain protein 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 171/353 (48%), Positives = 202/353 (57%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWR+VPT+TGL RCSKSCRLRWTNY
Sbjct:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHXXXXXXXXX 120
             LRPGIKRGNFT+ EEKMI+HLQALLGNRWAAIASYL +RTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTEHEEKMILHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKMN 120

Query:   121 XXXXGCSE---DNSQY---RDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKA 174
                        DN  +        S  S   S+GQWERRLQTDI+MAKQALC ALS DK 
Sbjct:   121 DSCDSTINNGLDNKDFSISNKNTTSHQSSNSSKGQWERRLQTDINMAKQALCDALSIDKP 180

Query:   175 SILSELKPANGFISYTKPAV-QAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSI 233
                    P N    ++ P +   P+ +SS+          TRN     S     + +N  
Sbjct:   181 Q-----NPTN----FSIPDLGYGPSSSSSSTTTTTTT---TRNTNPYPSGVYASSAENIA 228

Query:   234 NNNVNHIAGAESASSEETPSKVASNSTAIELSEAFESLFGFESFDSSNSTDLSQSVTPES 293
                 N +      S    P  VA+   AI  + A  S     S    +   +  S+   +
Sbjct:   229 RLLQNFMKDTPKTS---VPLPVAATEMAI--TTAASS----PSTTEGDGEGIDHSLFSFN 279

Query:   294 SAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLNDLKLDDHE 346
             S   + E K  L+D        Q   LSL EKWLFD+Q     +N++ L+  E
Sbjct:   280 S-IDEAEEKPKLIDHDINGLITQ-GSLSLFEKWLFDEQSHDMIINNMSLEGQE 330

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2025565 MYB60 "myb domain protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 6.7e-70, Sum P(3) = 6.7e-70
 Identities = 104/111 (93%), Positives = 107/111 (96%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWR+VPTNTGLLRCSKSCRLRWTNY
Sbjct:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH 111
             LRPGIKRGNFT  EE MIIHLQALLGN+WA+IASYL QRTDNDIKNYWNTH
Sbjct:    61 LRPGIKRGNFTPHEEGMIIHLQALLGNKWASIASYLPQRTDNDIKNYWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 116/314 (36%), Positives = 160/314 (50%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             MGR PCCDK+G+KKGPWTPEED  L++YI+EHG G+WR++P   GL RC KSCRLRWTNY
Sbjct:     1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHXXXXXXXXX 120
             LRP IKRG F  QEE+ II L ALLGNRW+AIA++L +RTDN+IKNYWNTH         
Sbjct:    61 LRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMG 120

Query:   121 XXXXGCSEDNSQYRDELASASSQQI--SRGQWER-RLQTDIHMAKQALCAALSPDKASIL 177
                      N      L  + +  I     QWE  RL+ +  +A+++    L   +    
Sbjct:   121 IDPVTHKPKNETPLSSLGLSKNAAILSHTAQWESARLEAEARLARESKLLHLQHYQTKTS 180

Query:   178 SELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNN- 236
             S+    +GF   T  ++  P + +      + L+  T     S    S       + ++ 
Sbjct:   181 SQPHHHHGF---THKSL-LPNWTTKPHEDQQQLESPTSTVSFSEMKESIPAKIEFVGSST 236

Query:   237 -VNHIAGAESASSEETPSKVASNSTAIELSEAFESLF-GFESFDSSNSTDLSQSVTPESS 294
              V  +   E      T  +  +      + E F  L  G +S D S S D +++    S 
Sbjct:   237 GVTLMKEPEHDWINSTMHEFETTQMGEGIEEGFTGLLLGGDSIDRSFSGDKNETAGESSG 296

Query:   295 AFQDY-ESKQLLLD 307
                +Y E  +  LD
Sbjct:   297 GDCNYYEDNKNYLD 310

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             M R PCC+K G+KKGPWT EED  LV YIQ+HG GNWR +P N GL RC KSCRLRWTNY
Sbjct:     1 MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH 111
             LRP IKRG F+ +EE+ II L + LGN+W+AIA+ L  RTDN+IKN+WNTH
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 90/168 (53%), Positives = 116/168 (69%)

Query:     5 PCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64
             PCCDK G+KKGPWTPEED  L++YI+EHG G+WR++P   GL RC KSCRLRWTNYLRP 
Sbjct:    48 PCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPD 107

Query:    65 IKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHXXXXXXXXXXXXX 124
             IKRG FT QEE+ II L ALLGNRW+AIA++L +RTDN+IKNYWNTH             
Sbjct:   108 IKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKM----- 162

Query:   125 GCSEDNSQYRDELASASSQQ------ISR-GQWER-RLQTDIHMAKQA 164
             G      ++++E  S+S+ Q      +S   QWE  RL+ +  +A+++
Sbjct:   163 GIDPVTHKHKNETLSSSTGQSKNAATLSHMAQWESARLEAEARLARES 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2086233 MYB15 "myb domain protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 76/111 (68%), Positives = 89/111 (80%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             MGR PCC+K+G+K+GPWTPEED ILVS+I  HG  NWRA+P   GLLRC KSCRLRW NY
Sbjct:     1 MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH 111
             L+P IKRGNFT +EE  II L  +LGNRW+AIA+ L  RTDN+IKN W+TH
Sbjct:    61 LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 79/111 (71%), Positives = 93/111 (83%)

Query:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
             MGR PCCDKIG+KKGPWTPEED +LV++I+++G G+WR +P   GLLRC KSCRLRWTNY
Sbjct:     1 MGRTPCCDKIGLKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH 111
             LRP IKRG FT  EEK++I L A+LGNRWAAIA+ L  RTDN+IKN WNTH
Sbjct:    61 LRPDIKRGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048443 "stamen development" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P81392	MYB06_ANTMA	No assigned EC number	0.5816	0.8461	0.9398	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-49
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-43
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	0.001
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.001

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  165 bits (418), Expect = 3e-49
 Identities = 71/112 (63%), Positives = 87/112 (77%)

Query: 5   PCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64
           PCC K+G+K+GPWT EED ILVS+I++ G G WR++P   GLLRC KSCRLRW NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 65  IKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116
           +KRG  T  EE +I+ L  LLGNRW+ IA  +  RTDN+IKNYWNTHL+KK+
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  156 bits (395), Expect = 1e-43
 Identities = 68/118 (57%), Positives = 87/118 (73%)

Query: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
           MGR  CC K  ++KG W+PEED  L+ +I ++G G W +VP   GL RC KSCRLRW NY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118
           LRP +KRG F+ QEE +II L A+LGNRW+ IA+ L  RTDN+IKN WN+ LKKK+++
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118

Length = 459

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 12  IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
            K G W   ED  L + +++ GP NW  V +        K    RW N+L P +K+ N++
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWS 76

Query: 72  DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAGCSED 129
           ++E++ +I L   LG +W+ IA Y  +RT       +   L+             +E 
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEF 134

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.9 bits (167), Expect = 6e-15
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
          +GPWTPEED +L+  +++HG GNW  +  +    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 67  RGNFTDQEEKMIIHLQALLGNR-WAAIASYLRQRTDNDIKNYWNTHL 112
           RG +T +E++++I      GN  W+ IA +L  RTDN  KN WN +L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          KG WT EED +L+  ++++G  NW  +       R ++ CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 67  RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKK 114
           +G +T++E++++I L    G N W  IA  L  RT    +  W   LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
          PWT EED +L+  ++++G  NW  +       R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 69  NFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHL 112
            +T++E+++++      G N W  IA  L  RT    +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 17 WTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEK 76
          WT EED  L+  ++++G  +W+ +    G  R   +CR RW   LRP   RG +T +E++
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

Query: 77 MI 78
           +
Sbjct: 58 RL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 70  FTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118
           +T++E++ ++ L    GN W  IA  L  RT +  ++ W   L+ K  +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEELG-RTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRAV 40
           WT EED  LV  ++++G GNW  +
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKI 26

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.79
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.75
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.61
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.53
PLN03212	249	Transcription repressor MYB5; Provisional	99.49
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.49
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.48
PLN03091	459	hypothetical protein; Provisional	99.41
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.37
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.35
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.32
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.26
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.17
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.05
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.99
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.83
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.6
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.29
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.78
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.61
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.46
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.41
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.31
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.17
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.1
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.96
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.89
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.81
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.69
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.5
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.22
PRK13923	170	putative spore coat protein regulator protein YlbO	96.19
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.09
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.81
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.75
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.13
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.09
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.36
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.97
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	93.1
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.1
PRK13923	170	putative spore coat protein regulator protein YlbO	92.01
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.94
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.62
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.15
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	90.31
KOG1194	534	consensus Predicted DNA-binding protein, contains	86.97
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	80.95
KOG4282	345	consensus Transcription factor GT-2 and related pr	80.41

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=4e-37  Score=306.82  Aligned_cols=128  Identities=53%  Similarity=1.001  Sum_probs=122.2

Q ss_pred             CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHH
Q 018746            1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIH   80 (351)
Q Consensus         1 MgR~~cc~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~   80 (351)
                      |||++||+|.+++|++||+|||++|+++|++||.++|..||+.++.+|+++|||+||.+||+|.+++++||.|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998778999999999999999999999999999999999


Q ss_pred             HHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhcCCCC
Q 018746           81 LQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAGCSE  128 (351)
Q Consensus        81 lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~~~~~  128 (351)
                      +|.+||++|..||++|||||+++||+||+.+|+++++..++.+..+++
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kp  128 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP  128 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999999999888777664433

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=8.7e-37  Score=286.23  Aligned_cols=123  Identities=58%  Similarity=1.160  Sum_probs=117.0

Q ss_pred             CCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHH
Q 018746            3 RPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQ   82 (351)
Q Consensus         3 R~~cc~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv   82 (351)
                      |+|||+|+++++++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.|||+|.+++++||.|||++|+++|
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999876899999999999999999999999999999999999


Q ss_pred             HHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhcC
Q 018746           83 ALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAG  125 (351)
Q Consensus        83 ~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~~  125 (351)
                      .+||++|..||++|||||+++|||||+.++++++.+.++.+..
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~  136 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT  136 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCC
Confidence            9999999999999999999999999999999988876655543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=7e-35  Score=273.48  Aligned_cols=111  Identities=59%  Similarity=1.028  Sum_probs=107.3

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcH
Q 018746           10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRW   89 (351)
Q Consensus        10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W   89 (351)
                      +.+.||+||+|||++|++||++||+++|..|++.+|++|++++||+||.|||+|++++|.||+|||.+|++|+.+||++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            34558999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHhhHHHHHhh
Q 018746           90 AAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ  120 (351)
Q Consensus        90 ~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~  120 (351)
                      +.||++|||||++.|||+|+.+|++++.+.+
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999998876

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.79  E-value=9.9e-20  Score=188.06  Aligned_cols=108  Identities=26%  Similarity=0.450  Sum_probs=101.4

Q ss_pred             CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHH
Q 018746            1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIH   80 (351)
Q Consensus         1 MgR~~cc~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~   80 (351)
                      +||......|++++|+||++||.+|+.+|.+||.++|-+|-..++ +|+..|||+||.|+|+...|++.|+-.||+.|+.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            578888899999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHhC-CcHHHHHHHcCCCCHHHHHHHHH
Q 018746           81 LQALLG-NRWAAIASYLRQRTDNDIKNYWN  109 (351)
Q Consensus        81 lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~  109 (351)
                      +|.+|| ++|.+||.+||+||..|...|=.
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~  455 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRL  455 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHH
Confidence            999999 78999999999999966554433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.75  E-value=1.1e-18  Score=180.42  Aligned_cols=137  Identities=23%  Similarity=0.398  Sum_probs=115.1

Q ss_pred             cCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccc-------------------------------
Q 018746            7 CDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRL-------------------------------   55 (351)
Q Consensus         7 c~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~-------------------------------   55 (351)
                      ...|.++|..|++|||++|..+...++..+|..||..+|..|+..||..                               
T Consensus       246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~  325 (939)
T KOG0049|consen  246 ELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSI  325 (939)
T ss_pred             hcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhc
Confidence            4678899999999999999999999998899999999986688888876                               


Q ss_pred             -----------------------cccccccCCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           56 -----------------------RWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        56 -----------------------RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                                             ||...|+|++++|+||.+||.+|+.+|.+||. .|.+|-+.+|||++.|||.||.+.
T Consensus       326 nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv  405 (939)
T KOG0049|consen  326 NSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV  405 (939)
T ss_pred             cCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence                                   77777999999999999999999999999995 599999999999999999999999


Q ss_pred             hhHHHHHhhhhhcCCCCCCchhhhhhhcccccccchhhHHH
Q 018746          112 LKKKVKKLQLAAAGCSEDNSQYRDELASASSQQISRGQWER  152 (351)
Q Consensus       112 LkkklkK~~~s~~~~~~~~~~~~~~~~s~ss~~~~~gqWe~  152 (351)
                      |...+|+..++...         +.........-..|+|..
T Consensus       406 L~~s~K~~rW~l~e---------deqL~~~V~~YG~g~Wak  437 (939)
T KOG0049|consen  406 LNRSAKVERWTLVE---------DEQLLYAVKVYGKGNWAK  437 (939)
T ss_pred             HHHhhccCceeecc---------hHHHHHHHHHHccchHHH
Confidence            99998887766542         111122233446788875

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.61  E-value=2.6e-16  Score=117.41  Aligned_cols=60  Identities=40%  Similarity=0.881  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHH
Q 018746           17 WTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMI   78 (351)
Q Consensus        17 WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~L   78 (351)
                      ||+|||++|+++|..|| .+|..||..|| .|++.||+.||.++|+|.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 69999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.53  E-value=4.9e-15  Score=152.42  Aligned_cols=107  Identities=29%  Similarity=0.542  Sum_probs=102.3

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcH
Q 018746           10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRW   89 (351)
Q Consensus        10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W   89 (351)
                      ..++.|.|+..||+.|..+|+.+|+++|..||..+. .|+++||+.||.++++|.+++..|+.+||..|+.+..++|.+|
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            457899999999999999999999999999999998 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746           90 AAIASYLRQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        90 ~~IAk~LpgRT~~qcKnRW~~~Lkkklk  117 (351)
                      ..||..+++|+..+|.+||...+.....
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999988887665

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.49  E-value=2e-14  Score=135.76  Aligned_cols=95  Identities=17%  Similarity=0.336  Sum_probs=82.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHc-CCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCc
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYL-RQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNS  131 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~L-pgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~  131 (351)
                      +++++++||.|||++|+++|++|| .+|..||+.+ ++||++|||.||.++|++.+++..++.+         ...+.+|
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKW  100 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRW  100 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccH
Confidence            578999999999999999999999 6799999998 5999999999999999999999887765         2334567


Q ss_pred             hhhhhhhcccccccchhhHHHhhhhH
Q 018746          132 QYRDELASASSQQISRGQWERRLQTD  157 (351)
Q Consensus       132 ~~~~~~~s~ss~~~~~gqWe~rLqt~  157 (351)
                      ..+.....+++...+++.|...|..+
T Consensus       101 s~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212        101 SLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            77777778888888999999877654

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=8e-15  Score=149.11  Aligned_cols=110  Identities=26%  Similarity=0.550  Sum_probs=103.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcH
Q 018746           10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRW   89 (351)
Q Consensus        10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W   89 (351)
                      +-++.|.|+.-||++|..+|.+||.+.|.+|++.+. ..+++||+.||..+|+|.|++..|+.+||++|+++...+...|
T Consensus         3 i~~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    3 IEIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             eEEecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence            357889999999999999999999999999999998 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhh
Q 018746           90 AAIASYLRQRTDNDIKNYWNTHLKKKVKKLQL  121 (351)
Q Consensus        90 ~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~  121 (351)
                      ..|+..| ||+.+||-.||++++.....+..-
T Consensus        82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   82 RTIADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             chHHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999 999999999999999987766543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.48  E-value=1.4e-14  Score=136.35  Aligned_cols=96  Identities=14%  Similarity=0.288  Sum_probs=84.7

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC-CCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCc
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR-QRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNS  131 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp-gRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~  131 (351)
                      +.+.+|+||.|||.+|+++|.+|| ++|..|++.++ +|++++||.||.++|++.+++..++.+         ...+.+|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 56999999999 999999999999999999999888865         4556778


Q ss_pred             hhhhhhhcccccccchhhHHHhhhhHH
Q 018746          132 QYRDELASASSQQISRGQWERRLQTDI  158 (351)
Q Consensus       132 ~~~~~~~s~ss~~~~~gqWe~rLqt~i  158 (351)
                      ..+....++++++..++.|..+|..++
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl  111 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKL  111 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHH
Confidence            888888999999999999988885444

>PLN03091 hypothetical protein; Provisional

Probab=99.41  E-value=1.4e-13  Score=138.60  Aligned_cols=97  Identities=11%  Similarity=0.292  Sum_probs=84.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC-CCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCc
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR-QRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNS  131 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp-gRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~  131 (351)
                      +.+++++||.|||++|+++|.+|| .+|..||+.++ +|+++|||.||+++|++.+++..++.+         ...+.+|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKW   89 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRW   89 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcch
Confidence            578899999999999999999999 57999999985 999999999999999999998887765         2235677


Q ss_pred             hhhhhhhcccccccchhhHHHhhhhHHH
Q 018746          132 QYRDELASASSQQISRGQWERRLQTDIH  159 (351)
Q Consensus       132 ~~~~~~~s~ss~~~~~gqWe~rLqt~i~  159 (351)
                      ..+.....+++...+++.|...|+.+++
T Consensus        90 skIAk~LPGRTDnqIKNRWnslLKKklr  117 (459)
T PLN03091         90 SQIAAQLPGRTDNEIKNLWNSCLKKKLR  117 (459)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            8888888889999999999998876654

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.37  E-value=1.2e-12  Score=94.16  Aligned_cols=46  Identities=24%  Similarity=0.512  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc-HHHHHHHcC-CCCHHHHHHHHHHHh
Q 018746           67 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLR-QRTDNDIKNYWNTHL  112 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~-W~~IAk~Lp-gRT~~qcKnRW~~~L  112 (351)
                      +++||+|||++|+++|.+||.. |..||..|| +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.35  E-value=6.4e-13  Score=138.42  Aligned_cols=101  Identities=29%  Similarity=0.633  Sum_probs=92.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC--CCCCCCChHHHHHHHHHHH-------
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG--IKRGNFTDQEEKMIIHLQA-------   83 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~--ikkg~WT~EED~~Ll~lv~-------   83 (351)
                      .+|.||+||++.|..+|.++| +.|..|+..|+  |.+..||+||.+|..++  .+++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999 79999999987  99999999999999887  4899999999999999995       


Q ss_pred             Hh-------C------------CcHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746           84 LL-------G------------NRWAAIASYLRQRTDNDIKNYWNTHLKKKV  116 (351)
Q Consensus        84 k~-------G------------~~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl  116 (351)
                      ++       |            =+|..|++.+..|+..|||-+|+.++....
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s  511 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS  511 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence            33       1            149999999999999999999998887754

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.32  E-value=1.9e-13  Score=98.33  Aligned_cols=48  Identities=38%  Similarity=0.738  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      |++||+|||++|+++|.+||.++|..||..|+.+|+..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997679999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.26  E-value=3.1e-12  Score=95.43  Aligned_cols=52  Identities=31%  Similarity=0.634  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhh
Q 018746           70 FTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQL  121 (351)
Q Consensus        70 WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~  121 (351)
                      ||++||.+|+++|.+||++|..||++|+.||..+|++||+.+|++.+++..+
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~w   52 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPW   52 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCc
Confidence            9999999999999999999999999997799999999999977765544433

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.17  E-value=6.3e-11  Score=82.34  Aligned_cols=47  Identities=36%  Similarity=0.722  Sum_probs=44.3

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      +++||.+||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.05  E-value=4e-10  Score=77.23  Aligned_cols=44  Identities=27%  Similarity=0.585  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746           69 NFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHL  112 (351)
Q Consensus        69 ~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~L  112 (351)
                      +||.+||.+|+.++.+|| .+|..||..|++||..+|++||+.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.99  E-value=1.5e-10  Score=80.35  Aligned_cols=48  Identities=38%  Similarity=0.832  Sum_probs=44.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      +++||++||++|+.++..||..+|..|+..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999779999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.83  E-value=1.1e-09  Score=74.97  Aligned_cols=45  Identities=40%  Similarity=0.834  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746           16 PWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      +||+|||..|+.++..||..+|..|+..++ +|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999779999999998 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.60  E-value=4.5e-08  Score=102.65  Aligned_cols=130  Identities=25%  Similarity=0.361  Sum_probs=97.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC-----------------------CCCccccccCCCccccccccc---cccccccCCC
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGP-----------------------GNWRAVPTNTGLLRCSKSCRL---RWTNYLRPGI   65 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~-----------------------~nW~~IA~~l~~~Rt~kQCR~---RW~n~L~P~i   65 (351)
                      ++-+.|+.+||..|...|..|-.                       +-|+.|...|| .|+...+..   |=++.+.+  
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~--  382 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN--  382 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--
Confidence            34489999999999999987710                       12567777788 499888866   33344444  


Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhcCCCCCCchhhhhhhccccccc
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAGCSEDNSQYRDELASASSQQI  145 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~~~~~~~~~~~~~~~s~ss~~~  145 (351)
                      ++|.||++|++.|..+|.++|+.|..|++.| ||.+..|+.||..+....-                           ..
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~---------------------------~~  434 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGS---------------------------KR  434 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhcccc---------------------------cc
Confidence            8999999999999999999999999999999 9999999999997655421                           13


Q ss_pred             chhhHHHhhhhHH-HHHHHHHhhhcCCC
Q 018746          146 SRGQWERRLQTDI-HMAKQALCAALSPD  172 (351)
Q Consensus       146 ~~gqWe~rLqt~i-~~a~q~~~~als~~  172 (351)
                      .+|.|..-....+ .....-++++++++
T Consensus       435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q  462 (607)
T KOG0051|consen  435 NRGAWSIEEEEKLLKTVNEMIREALQPQ  462 (607)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHhhccc
Confidence            4566665544443 44456666666664

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.29  E-value=8e-08  Score=99.66  Aligned_cols=98  Identities=28%  Similarity=0.624  Sum_probs=85.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccC--CCCCCCCChHHHHHHHHHHHHhC----
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP--GIKRGNFTDQEEKMIIHLQALLG----   86 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P--~ikkg~WT~EED~~Ll~lv~k~G----   86 (351)
                      .+|.||+||+..|...+..+| ..|..|...++  |-+..||+||.+|..+  .+++++|+.||+.+|...|...-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            479999999999999999999 69999998776  9999999999999988  68889999999999999887432    


Q ss_pred             ----CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           87 ----NRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        87 ----~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                          -.|..|++++++|..-+|+.++..+..
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence                249999999999999888887765444

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.78  E-value=2.4e-05  Score=80.98  Aligned_cols=60  Identities=28%  Similarity=0.524  Sum_probs=56.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc
Q 018746           65 IKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA  124 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~  124 (351)
                      ++.|.|+.-||+.|...|.+|| +.|++|++.++-.|..||++||+.++++.+++..++..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~e   65 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSRE   65 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhh
Confidence            5678999999999999999999 67999999999999999999999999999999887765

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.61  E-value=3.1e-05  Score=58.52  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=43.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCC---ccccccCCCcc-ccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNW---RAVPTNTGLLR-CSKSCRLRWTNYL   61 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW---~~IA~~l~~~R-t~kQCR~RW~n~L   61 (351)
                      +-.||+||..+++++|+.+|.++|   ..|+..|...| +..||+.+++.|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            567999999999999999998899   99999887567 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.46  E-value=0.00023  Score=72.49  Aligned_cols=50  Identities=22%  Similarity=0.416  Sum_probs=45.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           64 GIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        64 ~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      .+-...||.+|+.+|++++..|| ++|..||.+++.|+..+|+.+|.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            34567899999999999999999 999999999999999999999986543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.41  E-value=0.00046  Score=52.15  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-cH---HHHHHHcC-CC-CHHHHHHHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQALLGN-RW---AAIASYLR-QR-TDNDIKNYWNTHLK  113 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~-~W---~~IAk~Lp-gR-T~~qcKnRW~~~Lk  113 (351)
                      +-.||+||..++++++..||. +|   ..|++.|. .| |..||+.+...+..
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            558999999999999999996 99   99999985 45 99999999876543

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.31  E-value=7.3e-05  Score=76.06  Aligned_cols=49  Identities=24%  Similarity=0.636  Sum_probs=45.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      +-...||.+|+-.|++++..||.+||..||.++| .|+..+|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            4567899999999999999999999999999999 999999999999865

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.17  E-value=0.00096  Score=62.17  Aligned_cols=103  Identities=17%  Similarity=0.382  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccCCCc--ccccccccccccccc-CCC--------------------CCCCCCh
Q 018746           16 PWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL--RCSKSCRLRWTNYLR-PGI--------------------KRGNFTD   72 (351)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~--Rt~kQCR~RW~n~L~-P~i--------------------kkg~WT~   72 (351)
                      +|++++|-.|+.+|..-.  +-..|+.-+.+.  -|-..+.+||+..|. |.+                    .+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998654  666666554433  366788999998753 322                    3568999


Q ss_pred             HHHHHHHHHHHHhCC---cHHHHHH-----HcCCCCHHHHHHHHHHHhhHHHHHhh
Q 018746           73 QEEKMIIHLQALLGN---RWAAIAS-----YLRQRTDNDIKNYWNTHLKKKVKKLQ  120 (351)
Q Consensus        73 EED~~Ll~lv~k~G~---~W~~IAk-----~LpgRT~~qcKnRW~~~LkkklkK~~  120 (351)
                      +|+++|.........   .+.+|=.     +-++||++++.++|..+.+..+-..+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ  134 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQ  134 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcc
Confidence            999999997765543   4766622     33689999999999976555554433

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.10  E-value=0.00086  Score=60.47  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=45.7

Q ss_pred             CCCCCChHHHHHHHHHHHHhC---C----cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHH
Q 018746           66 KRGNFTDQEEKMIIHLQALLG---N----RWAAIASYLRQRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G---~----~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK  118 (351)
                      +...||.|||.+|-+.|.+|=   .    -+..++..| +||...|.-|||.++++++..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            457899999999999999873   2    389999999 999999999999999998754

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.96  E-value=0.0011  Score=52.45  Aligned_cols=53  Identities=42%  Similarity=0.676  Sum_probs=37.2

Q ss_pred             CCCCChHHHHHHHHHHHH------hC--C------cHHHHHHHcC----CCCHHHHHHHHHHHhhHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQAL------LG--N------RWAAIASYLR----QRTDNDIKNYWNTHLKKKVKKLQ  120 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k------~G--~------~W~~IAk~Lp----gRT~~qcKnRW~~~LkkklkK~~  120 (351)
                      +..||.+|...||+++..      ++  +      -|..||..|.    .||..||+++|.+ |++.+++..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~-L~~~Yk~~k   71 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKN-LKKKYKKIK   71 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHH-HHHHHHCSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHH
Confidence            357999999999999877      22  1      3999999883    6999999999998 555565543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.89  E-value=0.0012  Score=68.04  Aligned_cols=45  Identities=16%  Similarity=0.280  Sum_probs=42.3

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           67 RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      ..+||.+|..+|++.++.||..|.+||++++.||..||--||-++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            448999999999999999999999999999999999999999764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.81  E-value=0.0016  Score=68.23  Aligned_cols=46  Identities=17%  Similarity=0.375  Sum_probs=43.0

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      .+..||++|..+|++.|..||..|.+||.++.+||..||-.++..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999998754

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.69  E-value=0.0025  Score=49.41  Aligned_cols=51  Identities=16%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-HHHHHHHcC-CCCHHHHHHHHHHHhhHHHH
Q 018746           67 RGNFTDQEEKMIIHLQALLG--------NR-WAAIASYLR-QRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G--------~~-W~~IAk~Lp-gRT~~qcKnRW~~~Lkkklk  117 (351)
                      +.+||.+||..|++.|.++.        ++ |.++++.-+ .+|-...|+||...|.++..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            45899999999999996642        22 999999888 99999999999988877643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.50  E-value=0.00082  Score=69.18  Aligned_cols=46  Identities=22%  Similarity=0.575  Sum_probs=43.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY   60 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (351)
                      ....|+.+|..+|++.|+.|| .+|.+||.++| .|+..||..||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            567999999999999999999 59999999999 99999999999875

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.22  E-value=0.015  Score=45.29  Aligned_cols=51  Identities=27%  Similarity=0.518  Sum_probs=41.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC----C-------------cHHHHHHHc-----CCCCHHHHHHHHHHHhhHHHH
Q 018746           67 RGNFTDQEEKMIIHLQALLG----N-------------RWAAIASYL-----RQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G----~-------------~W~~IAk~L-----pgRT~~qcKnRW~~~Lkkklk  117 (351)
                      ...||.+|...|++++.+|.    +             -|..|+..|     +.||..+||.+|.++...-.+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45799999999999998873    1             299999987     269999999999986665433

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.19  E-value=0.0079  Score=54.88  Aligned_cols=52  Identities=13%  Similarity=0.308  Sum_probs=44.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc-------HHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746           65 IKRGNFTDQEEKMIIHLQALLGNR-------WAAIASYLRQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G~~-------W~~IAk~LpgRT~~qcKnRW~~~Lkkklk  117 (351)
                      .+...||.|||.+|-+.|..|+..       ...++..| +||..+|.-|||.++++++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            356789999999999999888732       67777888 99999999999999998763

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.09  E-value=0.0026  Score=66.63  Aligned_cols=46  Identities=24%  Similarity=0.640  Sum_probs=42.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY   60 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (351)
                      -++.||.+|+.+|+++|+.|| .+|.+|+.+++ .|+..||-.++.+.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            477899999999999999999 59999999999 99999999998774

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.81  E-value=0.0015  Score=51.67  Aligned_cols=48  Identities=27%  Similarity=0.629  Sum_probs=32.8

Q ss_pred             cCCCCHHHHHHHHHHHHH--h----C--C-----CCCccccccC---CCccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQE--H----G--P-----GNWRAVPTNT---GLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~--~----G--~-----~nW~~IA~~l---~~~Rt~kQCR~RW~n~L   61 (351)
                      +-.||.+|...|+.++..  +    +  .     .-|..||..|   |..|++.||+.||.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            357999999999999887  2    1  1     1499999775   56799999999998853

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.75  E-value=0.0021  Score=49.81  Aligned_cols=51  Identities=25%  Similarity=0.445  Sum_probs=32.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC--------CCCccccccCCCccccccccccccccccCC
Q 018746           14 KGPWTPEEDIILVSYIQEHGP--------GNWRAVPTNTGLLRCSKSCRLRWTNYLRPG   64 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~--------~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (351)
                      +.+||.|||++|+++|..+..        .=|.+++..-+..++-.+-|+||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            457999999999999976632        138888877665788889999999988754

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.13  E-value=0.0041  Score=56.21  Aligned_cols=50  Identities=30%  Similarity=0.735  Sum_probs=42.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHh---CC---CCCccccccCCCccccccccccccccccC
Q 018746           12 IKKGPWTPEEDIILVSYIQEH---GP---GNWRAVPTNTGLLRCSKSCRLRWTNYLRP   63 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~---G~---~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P   63 (351)
                      .+...||.|||.+|-+.|-+|   |.   ....+|+..++  ||+.-|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            467789999999999999888   21   15788888876  9999999999999874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.09  E-value=0.028  Score=55.98  Aligned_cols=49  Identities=27%  Similarity=0.504  Sum_probs=43.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           65 IKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      |--..|+..|+.+|++...-+| ++|..||.+++.|+...||.+|..+..
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3345799999999999999999 899999999999999999999876554

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.36  E-value=0.13  Score=58.48  Aligned_cols=101  Identities=11%  Similarity=0.311  Sum_probs=74.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccc----------------------------------------
Q 018746           16 PWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRL----------------------------------------   55 (351)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~----------------------------------------   55 (351)
                      .|+.-+=..++.+..+||..+-..||..|. +++...++.                                        
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477777777888888999888888988886 566655542                                        


Q ss_pred             --------ccccc-c-cCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHH------------cCCCCHHHHHHHHHHHh
Q 018746           56 --------RWTNY-L-RPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASY------------LRQRTDNDIKNYWNTHL  112 (351)
Q Consensus        56 --------RW~n~-L-~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~------------LpgRT~~qcKnRW~~~L  112 (351)
                              -|... + .+..++..||++||..|+..+.+|| .+|..|-..            +..||+..|..|...++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                    12110 0 1223455799999999999999999 779999443            24699999999999888


Q ss_pred             hHHHH
Q 018746          113 KKKVK  117 (351)
Q Consensus       113 kkklk  117 (351)
                      +-..+
T Consensus       985 ~~~~~  989 (1033)
T PLN03142        985 RLIEK  989 (1033)
T ss_pred             HHHHH
Confidence            76533

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.97  E-value=0.01  Score=46.23  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=39.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CCCccccccC----CCccccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHGP----------------GNWRAVPTNT----GLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~----------------~nW~~IA~~l----~~~Rt~kQCR~RW~n~L   61 (351)
                      ++..||++|.+.|+++|.+|..                .-|..|+..|    +..|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999821                2499998664    22699999999998864

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=93.10  E-value=0.024  Score=56.48  Aligned_cols=50  Identities=20%  Similarity=0.554  Sum_probs=45.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccccc
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      |---.|+..|+.+|++..+-.|-+||..||..+| .|....|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            3455799999999999999999999999999999 9999999999998765

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.10  E-value=0.26  Score=48.80  Aligned_cols=53  Identities=21%  Similarity=0.361  Sum_probs=41.3

Q ss_pred             CCCCChHHHHHHHHHHHHh----------CCcHHHHHHHcC----CCCHHHHHHHHHHHhhHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQALL----------GNRWAAIASYLR----QRTDNDIKNYWNTHLKKKVKKLQ  120 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~----------G~~W~~IAk~Lp----gRT~~qcKnRW~~~LkkklkK~~  120 (351)
                      ...|+.+|-..||++..+.          +.-|..||+.+.    -||+.+||++|.++.++ +++..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~-Yk~~k  120 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK-YKKEK  120 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHh
Confidence            4689999999999998653          234999999653    69999999999985554 55543

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=92.01  E-value=0.028  Score=51.40  Aligned_cols=50  Identities=24%  Similarity=0.523  Sum_probs=38.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC------CCccccccCCCcccccccccccccccc
Q 018746           11 GIKKGPWTPEEDIILVSYIQEHGPG------NWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        11 ~ikKg~WT~EEDe~L~~lV~~~G~~------nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      ..++..||.|||.+|-+.|-.|+..      -...++..+.  |++..|..||..+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            3578899999999999988888542      2445555555  999999999977765

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.94  E-value=0.32  Score=41.90  Aligned_cols=51  Identities=20%  Similarity=0.447  Sum_probs=40.2

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCC----cHHHHHHH------------cCCCCHHHHHHHHHHHhhH
Q 018746           64 GIKRGNFTDQEEKMIIHLQALLGN----RWAAIASY------------LRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        64 ~ikkg~WT~EED~~Ll~lv~k~G~----~W~~IAk~------------LpgRT~~qcKnRW~~~Lkk  114 (351)
                      ..++..||++||..|+.++.+||-    .|..|-..            +..||+..|..|.+.+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            456779999999999999999995    69888653            3469999999999988765

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.62  E-value=0.76  Score=47.00  Aligned_cols=56  Identities=16%  Similarity=0.243  Sum_probs=47.2

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhh
Q 018746           67 RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLA  122 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s  122 (351)
                      ..+|+.+|-++...+...+|..+.-|+..||.|...|||.+|.+--++.-.+...+
T Consensus       365 ~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~a  420 (507)
T COG5118         365 ALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEA  420 (507)
T ss_pred             CCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHH
Confidence            34899999999999999999999999999999999999999987655543333333

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.15  E-value=0.14  Score=52.26  Aligned_cols=84  Identities=19%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             CCCccccccCCCccccccccccccccccCC-------------------------CCCCCCChHHHHHHHHHHHHhCCcH
Q 018746           35 GNWRAVPTNTGLLRCSKSCRLRWTNYLRPG-------------------------IKRGNFTDQEEKMIIHLQALLGNRW   89 (351)
Q Consensus        35 ~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~-------------------------ikkg~WT~EED~~Ll~lv~k~G~~W   89 (351)
                      ..|.-++-..+ -|...-...+|...-++.                         +....||.+|-+.|++|...|.-+|
T Consensus        74 ~~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf  152 (445)
T KOG2656|consen   74 RPWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRF  152 (445)
T ss_pred             CCceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeE
Confidence            36766664444 566666677777663321                         1234699999999999999999999


Q ss_pred             HHHHHH-----cCC-CCHHHHHHHHHHHhhHHHHHh
Q 018746           90 AAIASY-----LRQ-RTDNDIKNYWNTHLKKKVKKL  119 (351)
Q Consensus        90 ~~IAk~-----Lpg-RT~~qcKnRW~~~LkkklkK~  119 (351)
                      -.||..     ++. ||-.++|.||+...++.++..
T Consensus       153 ~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr  188 (445)
T KOG2656|consen  153 FVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR  188 (445)
T ss_pred             EEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence            999876     665 999999999999887766543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=90.31  E-value=0.97  Score=35.99  Aligned_cols=49  Identities=31%  Similarity=0.557  Sum_probs=36.7

Q ss_pred             CCChHHHHHHHHHHHHh---CC----------cHHHHHHHcC-----CCCHHHHHHHHHHHhhHHHHH
Q 018746           69 NFTDQEEKMIIHLQALL---GN----------RWAAIASYLR-----QRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        69 ~WT~EED~~Ll~lv~k~---G~----------~W~~IAk~Lp-----gRT~~qcKnRW~~~LkkklkK  118 (351)
                      .||++++..|++++.+.   |+          .|..|+..|.     ..+..||++||.. |++..+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~-lk~~y~~   67 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT-LKKDYRI   67 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH-HHHHHHH
Confidence            49999999999998653   21          2999998773     4588999999986 4444443

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=86.97  E-value=1.8  Score=45.26  Aligned_cols=49  Identities=14%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      ....||.||--++-+++..||.++.+|-+.||.|+-..+..+|+...+.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999998865544

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=80.95  E-value=4.7  Score=28.78  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           72 DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        72 ~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      ++++..++.++...|-.|.+||..+ |.+...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677888888888999999999999 9999999998765443

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=80.41  E-value=0.68  Score=45.84  Aligned_cols=47  Identities=26%  Similarity=0.471  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHHHHh---------CCCCCcccccc---CCCccccccccccccccc
Q 018746           15 GPWTPEEDIILVSYIQEH---------GPGNWRAVPTN---TGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~---------G~~nW~~IA~~---l~~~Rt~kQCR~RW~n~L   61 (351)
                      ..|+.+|-..|+.+....         ....|..||..   .|..|++.||+.+|.|+.
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            689999999999987643         12369999974   456699999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-19
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-19
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-19
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-19
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-18
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-15
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-11
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-09
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-06
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		3e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		5e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		5e-06

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T++
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           E+++I      LGNRWA IA  L  RTDN IKN+WN+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T++
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           E+++I      LGNRWA IA  L  RTDN IKN+WN+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 12  IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
           + KGPWT EED  ++ ++Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72  DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           ++E+++I      LGNRWA IA  L  RTDN +KN+WN+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T++
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           E+++I      LGNRWA IA  L  RTDN IKN+WN+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           KGPWT EED  ++  ++++G   W  +  +    R  K CR RW N+L P +K+ ++T++
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           E+++I     +LGNRWA IA  L  RTDN +KN+WN+
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFT 71
           KGP+T  ED ++  Y++E+GP NW   P  T  L  R  K CR RW N+L P + +  +T
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72  DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
            +E++ I      LG++W+ IA  +  RTDN IKN WN+
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 13  KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTD 72
           KK  +TPEED +L   + +HG  +W+ +   T   R ++ CR RW NYL P I    +T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73  QEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           +E+ +++      G +WA IA +   RTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           K  +T EED+ L   +  +G  +W  + +   + R  + CR RW NY+ P ++   ++ +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYW 108
           E+ ++    A  G +W  I+ +L+ R+DN+I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 65  IKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           +K+ ++T++E+++I      LGNRWA IA  L  RTDN IKN+WN+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          KGPWT EED  L+  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 65  IKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
           +K+ ++T++E++++      LGNRWA IA  L  RTDN IKN+WN+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	6e-65
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-64
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	5e-63
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	6e-56
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-53
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-33
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	5e-53
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-27
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-24
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	3e-20
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-16
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	9e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	5e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-07
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	4e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	3e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	5e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  200 bits (510), Expect = 6e-65
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 12  IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
           + KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116
           ++E+++I      LGNRWA IA  L  RTDN IKN+WN+ +++KV
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  199 bits (509), Expect = 2e-64
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           KGP+T  ED ++  Y++E+GP NW  + +     R  K CR RW N+L P + +  +T +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAGCSEDNS 131
           E++ I      LG++W+ IA  +  RTDN IKN WN+ + K++            D S
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRS 118

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  195 bits (499), Expect = 5e-63
 Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 11  GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            + KGPWT EED  ++ ++Q++GP  W  +  +    R  K CR RW N+L P +K+ ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 71  TDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116
           T++E+++I      LGNRWA IA  L  RTDN +KN+WN+ +++KV
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  177 bits (452), Expect = 6e-56
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 8   DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKR 67
           +    KK  +TPEED +L   + +HG  +W+ +       R ++ CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISH 62

Query: 68  GNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118
             +T +E+ +++      G +WA IA +   RTD  IKN W T   K    
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIP 113

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  172 bits (437), Expect = 3e-53
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 11  GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            + KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  TDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116
           T++E+++I      LGNRWA IA  L  RTDN IKN+WN+ +++KV
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  120 bits (302), Expect = 3e-33
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 11  GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            + K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P + +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 71  TDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118
           T +E++ +I L    G  RW+ IA +L+ R     +  W+ HL  +VKK
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  169 bits (430), Expect = 5e-53
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           K  +T EED+ L   +  +G  +W  +       R  + CR RW NY+ P ++   ++ +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQ 120
           E+ ++    A  G +W  I+ +L+ R+DN+I+N W    + + K  +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  100 bits (252), Expect = 3e-27
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          + KGPWT EED  L+  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            K G W   ED IL + + ++G   W  + +     + +K C+ RW  +L P IK+  +
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEW 64

Query: 71 TDQEE 75
          +    
Sbjct: 65 SGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.8 bits (203), Expect = 3e-20
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          + K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 70.3 bits (173), Expect = 6e-16
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNW----RAVPTNTGLLRCSKSCRLRWTNYLRP 63
            K  WT EED  L + +++ G  +W       P      R  + C+ RW   L  
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-----RTDQQCQYRWLRVLSG 56

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 55.8 bits (135), Expect = 9e-11
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLR 62
          K+  W  EED  L S ++++G GNW  +  +     R S   + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 66  KRGNFTDQEEKMIIHLQALLGN-RWAAIASY--LRQRTDNDIKNYWNTHLKKK 115
           KR  +  +E+K +       G   W+ I  +     RT   +K+ W T  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
          KK  WT EE   + + +Q++G GNW A+  N   + R +   + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 66  KRGNFTDQEEKMIIHLQALLGN-RWAAIASY--LRQRTDNDIKNYWNTHLKKKV 116
           K+  +T +E + +       G   WAAI+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
          KK  WT EE   + + +Q++G GNW A+  N   + R +   + RW    R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 66  KRGNFTDQEEKMIIHLQALLGN-RWAAIASY--LRQRTDNDIKNYWNTHLKKKV 116
           K+  +T +E + +       G   WAAI+       RT   IK+ W T  +  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN 69
           KK  W+ EE+  L+   +   P  WR +    G  R +  C   +   L    +R +
Sbjct: 7  GKKTEWSREEEEKLLHLAKLM-PTQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 63  PGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLA 122
              K+  ++ +EE+ ++HL  L+  +W  IA  +  RT      ++   L K  ++    
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGP 63

Query: 123 AAG 125
           ++G
Sbjct: 64  SSG 66

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAV---PTNTGLLRCSKSCRLRWTNYLR-----PG 64
           + P++  E   LV  +++ G G WR V          R     + +W   +      P 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 65 IKRGNFTDQEEKM-IIHLQALLGNRWA 90
           +RG    QE    +++       +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
          K+  W  EED  L S ++++G GNW  +  +     R S   + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 13  KKGPWTPEEDIILVSYIQEHGPGNWRAV---PTNTGLLRCSKSCRLRWTNYLR-----PG 64
            + P+T  E  +LV  ++  G G WR V          R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 65  IKRGNFTDQEEKM-IIHLQALLGNRWAA 91
            +RG    QE    ++  QA      + 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64
              WT +E++ L+  + + G GNW+ V       +  + C   +  Y    
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 13  KKGPWTPEEDIILVSYIQEHGPGNWRAV---PTNTGLLRCSKSCRLRWTNYLR-----PG 64
            + P++  E   LV  ++  G G WR V     +    R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  IKRGNFTDQE-EKMIIHLQALLGNRWA 90
            +RG    Q+    ++   A    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRAV---PTNTGLLRCSKSCRLRWTNYLR-----PGIKR 67
          P++  E   LV  ++  G G WR V     +    R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GNFTDQEEKM-IIHLQALLGNR 88
          G    Q+    ++   A    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
               W  +E+++L+   +  G GNW  +    G  R  + CR  +   
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query: 54  RLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLK 113
                +  R  +    +T++E           G  W+AIA  +  +T +  KN++  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 114 K 114
           +
Sbjct: 63  R 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRW 57
            G +TPEE   L     +HG  +W  +    G  R + S + R 
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 45/363 (12%), Positives = 108/363 (29%), Gaps = 103/363 (28%)

Query: 19  PEEDIILVSYIQEHGPG----NWRAVPT-NTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
           P +++++       G       W A+    +  ++C    ++ W       +   N  + 
Sbjct: 149 PAKNVLI------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKN-CNS 194

Query: 74  EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH-LKKKVKKLQLAAAGCSEDNSQ 132
            E ++  LQ L       I      R+D+        H ++ ++++L          +  
Sbjct: 195 PETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--------SKP 242

Query: 133 YRDELASASSQQISRGQWERRL--------QTDIHMAKQALCAALSPDKASILSELKPAN 184
           Y + L       +       +         +  +    + +   LS    + +S    + 
Sbjct: 243 YENCLL------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 185 G---------FISYTKPAVQA-PAYASSTEN------IAKLLKGWTRNAQKSASSNSGVT 228
                      + Y     Q  P    +T N      IA+ ++                T
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGL------------AT 343

Query: 229 DQNSINNNVNHIAGAESASSEE-TPSKVASNSTAIELSEAFESLFGFESFDSSN-STDLS 286
             N  + N + +     +S     P+         E  + F+ L  F    S++  T L 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPA---------EYRKMFDRLSVFP--PSAHIPTILL 392

Query: 287 QSVTPESSAFQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFDDQGGKDYLNDLKLDDHE 346
             +  +           ++++        ++ + SL+EK   +       +  + L+   
Sbjct: 393 SLIWFDV----IKSDVMVVVN--------KLHKYSLVEKQPKE---STISIPSIYLELKV 437

Query: 347 DTD 349
             +
Sbjct: 438 KLE 440

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 66  KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVK 117
               +T +E+++     A  G RW  I+  +  RT   +K+Y   + K KVK
Sbjct: 8   YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 14/75 (18%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPG-----NWR----AVPTNTGLLRCSKSCRLRWTNYLRP 63
           K  +T EED  ++  ++++         +      VP +TG      S R R+  YL  
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTG-----NSIRHRFRVYLSK 61

Query: 64 GIKRGNFTDQEEKMI 78
           ++     D+  K++
Sbjct: 62 RLEYVYEVDKFGKLV 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.87
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.83
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.7
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.67
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.66
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.66
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.65
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.63
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.63
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.62
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.6
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.58
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.58
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.54
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.51
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.51
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.5
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.5
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.49
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.18
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.45
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.43
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.43
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.37
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.34
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.34
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.33
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.9
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.23
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.23
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.19
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.18
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.17
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.16
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.15
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.12
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.94
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.91
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.88
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.78
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.71
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.63
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.62
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.49
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.43
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.4
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.31
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.29
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.15
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.12
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.08
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.03
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.95
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.78
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.75
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.75
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.8
2crg_A	70	Metastasis associated protein MTA3; transcription	97.57
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.56
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.42
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.22
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.17
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.04
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.72
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.68
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.66
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.59
2crg_A	70	Metastasis associated protein MTA3; transcription	96.5
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.33
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	93.52
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.19
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.89
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.18
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	91.6
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	87.01

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=9.7e-34  Score=232.64  Aligned_cols=105  Identities=43%  Similarity=0.836  Sum_probs=99.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHH
Q 018746           11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWA   90 (351)
Q Consensus        11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~   90 (351)
                      .+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746           91 AIASYLRQRTDNDIKNYWNTHLKKKV  116 (351)
Q Consensus        91 ~IAk~LpgRT~~qcKnRW~~~Lkkkl  116 (351)
                      .||++|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1.9e-33  Score=232.56  Aligned_cols=103  Identities=28%  Similarity=0.623  Sum_probs=99.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHH
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIA   93 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IA   93 (351)
                      ||+||+|||++|+++|+.||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHhhHHHH
Q 018746           94 SYLRQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        94 k~LpgRT~~qcKnRW~~~Lkkklk  117 (351)
                      ++|||||+++|++||+.++++..+
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHH
Confidence            999999999999999998877543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=5.7e-33  Score=237.24  Aligned_cols=109  Identities=36%  Similarity=0.688  Sum_probs=103.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHH
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAI   92 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~I   92 (351)
                      .||+||+|||++|+++|..||.++|..||..|+ +|+++||++||.++|+|.+++++||.|||.+|+++|.+||++|..|
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            379999999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHhhHHHHHhhhh
Q 018746           93 ASYLRQRTDNDIKNYWNTHLKKKVKKLQLA  122 (351)
Q Consensus        93 Ak~LpgRT~~qcKnRW~~~LkkklkK~~~s  122 (351)
                      |++|||||+++|++||+.+|++++......
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~  109 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRISTNSNH  109 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence            999999999999999999999987655433

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=8.2e-33  Score=234.98  Aligned_cols=108  Identities=41%  Similarity=0.794  Sum_probs=102.4

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN   87 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~   87 (351)
                      .+|.+++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~   99 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   99 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            45788999999999999999999999889999999998 99999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746           88 RWAAIASYLRQRTDNDIKNYWNTHLKKKV  116 (351)
Q Consensus        88 ~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl  116 (351)
                      +|..||++|||||+++|++||+.++++++
T Consensus       100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999988754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=1.5e-32  Score=233.51  Aligned_cols=105  Identities=35%  Similarity=0.668  Sum_probs=100.4

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN   87 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~   87 (351)
                      .+...++|+||+|||++|+++|++||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467899999999999999999999996 9999999998 99999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           88 RWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        88 ~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      +|..||++|||||+++||+||+.++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999987765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.7e-32  Score=240.68  Aligned_cols=144  Identities=24%  Similarity=0.526  Sum_probs=84.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-cH
Q 018746           11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN-RW   89 (351)
Q Consensus        11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~-~W   89 (351)
                      ++++++||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||.|||.+|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            36799999999999999999999889999999998 99999999999999999999999999999999999999995 79


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchhhhhhhcccccccchhhHHHhhh
Q 018746           90 AAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQYRDELASASSQQISRGQWERRLQ  155 (351)
Q Consensus        90 ~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~~~~~~s~ss~~~~~gqWe~rLq  155 (351)
                      ..||.+|||||+.||++||+++|++.+++..++.+         ..-+..|..+....++++...+++.|...|.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r  156 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR  156 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999987765555443         1112345555555666677777777776544

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=1.3e-30  Score=228.59  Aligned_cols=108  Identities=42%  Similarity=0.795  Sum_probs=102.9

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN   87 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~   87 (351)
                      .+|.+++++||+|||++|+++|+.||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            46889999999999999999999999888999999998 99999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746           88 RWAAIASYLRQRTDNDIKNYWNTHLKKKV  116 (351)
Q Consensus        88 ~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl  116 (351)
                      +|..||++|||||+++|++||+.++++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999988754

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.87  E-value=1.8e-23  Score=177.46  Aligned_cols=115  Identities=22%  Similarity=0.469  Sum_probs=75.5

Q ss_pred             ccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHH
Q 018746           40 VPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        40 IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK  118 (351)
                      ||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|.+.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788888 99999999999999999999999999999999999999995 6999999999999999999999999987766


Q ss_pred             hhhhhc---------CCCCCCchhhhhhhcccccccchhhHHHhhh
Q 018746          119 LQLAAA---------GCSEDNSQYRDELASASSQQISRGQWERRLQ  155 (351)
Q Consensus       119 ~~~s~~---------~~~~~~~~~~~~~~s~ss~~~~~gqWe~rLq  155 (351)
                      ..++.+         ...+.+|..+....++++...+++.|...|.
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~  125 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMR  125 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTT
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence            555543         1112345666666666777777777776554

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=9.2e-22  Score=151.22  Aligned_cols=66  Identities=26%  Similarity=0.563  Sum_probs=64.0

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHH
Q 018746            9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEE   75 (351)
Q Consensus         9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED   75 (351)
                      .+.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||.|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            5789999999999999999999999889999999999 99999999999999999999999999998

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.71  E-value=7.1e-18  Score=157.41  Aligned_cols=106  Identities=16%  Similarity=0.246  Sum_probs=92.0

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCC-----CccccccCCCccccccccccccccccCCCC-----------------
Q 018746            9 KIGIKKGPWTPEEDIILVSYIQEHGPGN-----WRAVPTNTGLLRCSKSCRLRWTNYLRPGIK-----------------   66 (351)
Q Consensus         9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~n-----W~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik-----------------   66 (351)
                      ...+++++||+|||++|+++|+++|..+     |..||+.|+ |||+.|||.||.++|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3568899999999999999999998532     999999999 99999999999999999986                 


Q ss_pred             ------------CCCCChHHHHHHHHHHHH-h------------------------------------------------
Q 018746           67 ------------RGNFTDQEEKMIIHLQAL-L------------------------------------------------   85 (351)
Q Consensus        67 ------------kg~WT~EED~~Ll~lv~k-~------------------------------------------------   85 (351)
                                  +..||.+||-.|+..+.+ |                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999877 2                                                


Q ss_pred             -----CC----cHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746           86 -----GN----RWAAIASYLRQRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        86 -----G~----~W~~IAk~LpgRT~~qcKnRW~~~Lkkk  115 (351)
                           |.    .|..||+.+|+||.+++|+||..+|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 11    6999999999999999999999888664

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-17  Score=130.74  Aligned_cols=59  Identities=20%  Similarity=0.275  Sum_probs=47.2

Q ss_pred             ccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746           53 CRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL  112 (351)
Q Consensus        53 CR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L  112 (351)
                      .--||.++|+|++++++||+|||++|+++|.+||++|..||++| |||++|||+||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 999999999999643

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=5e-17  Score=123.39  Aligned_cols=60  Identities=22%  Similarity=0.362  Sum_probs=56.7

Q ss_pred             ccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHh
Q 018746           59 NYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKL  119 (351)
Q Consensus        59 n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~  119 (351)
                      .+|+|.+++++||.|||++|+++|.+||++|..||. |+|||++|||+||+.+|++.+++.
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            379999999999999999999999999999999999 889999999999999999988654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=1.5e-17  Score=123.95  Aligned_cols=57  Identities=25%  Similarity=0.468  Sum_probs=54.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCC
Q 018746            9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIK   66 (351)
Q Consensus         9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik   66 (351)
                      .|.+++++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            3689999999999999999999999889999999998 99999999999999999876

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.66  E-value=9.8e-17  Score=123.95  Aligned_cols=58  Identities=26%  Similarity=0.317  Sum_probs=55.0

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHH
Q 018746           61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        61 L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK  118 (351)
                      ++|.+++++||+|||++|+++|.+||++|..||.+|||||++|||+||+.++++.+++
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999887655

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.66  E-value=2.3e-17  Score=119.59  Aligned_cols=52  Identities=42%  Similarity=0.841  Sum_probs=49.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG   64 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (351)
                      +++|+||+|||++|+++|++||..+|..||..|+ +|+++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5899999999999999999999878999999998 999999999999999984

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.65  E-value=1.9e-17  Score=140.77  Aligned_cols=82  Identities=18%  Similarity=0.338  Sum_probs=76.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccC----CCcccccccccccccccc-----CCCCCC-CCChHHHHHH
Q 018746            9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNT----GLLRCSKSCRLRWTNYLR-----PGIKRG-NFTDQEEKMI   78 (351)
Q Consensus         9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L~-----P~ikkg-~WT~EED~~L   78 (351)
                      ++..++++||+|||+.|+++|++||.++|..|+..+    + +||..+|++||.|+|+     |.++++ +|+++|+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            467889999999999999999999988999999874    4 8999999999999998     999999 9999999999


Q ss_pred             HHHHHHhCCcHHH
Q 018746           79 IHLQALLGNRWAA   91 (351)
Q Consensus        79 l~lv~k~G~~W~~   91 (351)
                      +.++..+|++|.+
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999975

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.63  E-value=4.9e-17  Score=124.57  Aligned_cols=63  Identities=24%  Similarity=0.340  Sum_probs=58.5

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCC-ccccccccccccccccCCCCCCCCC
Q 018746            9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGL-LRCSKSCRLRWTNYLRPGIKRGNFT   71 (351)
Q Consensus         9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ikkg~WT   71 (351)
                      ++..++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999999999999999998899999999986 8999999999999999999988764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.63  E-value=4e-17  Score=118.24  Aligned_cols=52  Identities=29%  Similarity=0.657  Sum_probs=48.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG   64 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (351)
                      |++++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999879999999998 999999999999999984

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.63  E-value=1.1e-16  Score=136.30  Aligned_cols=78  Identities=24%  Similarity=0.367  Sum_probs=72.2

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccC----CCccccccccccccccc-----cCCCCCCCCChHH-HHHHH
Q 018746           10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNT----GLLRCSKSCRLRWTNYL-----RPGIKRGNFTDQE-EKMII   79 (351)
Q Consensus        10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L-----~P~ikkg~WT~EE-D~~Ll   79 (351)
                      ...++++||+|||+.|+++|++||.++|..|+..+    + +|+..||++||.|++     +|.++++.|+++| +.+|+
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            45679999999999999999999999999999863    4 899999999999999     8999999999999 89999


Q ss_pred             HHHHHhCCc
Q 018746           80 HLQALLGNR   88 (351)
Q Consensus        80 ~lv~k~G~~   88 (351)
                      +++..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999975

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=1.9e-16  Score=118.00  Aligned_cols=55  Identities=22%  Similarity=0.360  Sum_probs=51.8

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746           62 RPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKV  116 (351)
Q Consensus        62 ~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl  116 (351)
                      +|.+++++||.|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5788999999999999999999999 699999999999999999999999998754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.4e-16  Score=120.93  Aligned_cols=63  Identities=24%  Similarity=0.455  Sum_probs=57.8

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc
Q 018746           62 RPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA  124 (351)
Q Consensus        62 ~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~  124 (351)
                      .|.+++++||.|||++|+++|.+|| ++|..||.+|++||+.||++||+++|++.+++..++.+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e   67 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP   67 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence            4678999999999999999999999 79999999999999999999999999998877666544

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.60  E-value=8.8e-16  Score=111.13  Aligned_cols=50  Identities=28%  Similarity=0.558  Sum_probs=46.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           65 IKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      +++++||.|||.+|+++|.+||. +|..||.+||+||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 899999999999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.58  E-value=1.5e-15  Score=110.08  Aligned_cols=50  Identities=30%  Similarity=0.664  Sum_probs=47.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           65 IKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      +++++||.|||++|+++|.+||. +|..||.+|+|||+.|||+||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999996 699999999999999999999999875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.58  E-value=2.8e-16  Score=119.51  Aligned_cols=56  Identities=32%  Similarity=0.502  Sum_probs=49.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCC-ccccccccccccccccCCCC
Q 018746           11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGL-LRCSKSCRLRWTNYLRPGIK   66 (351)
Q Consensus        11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ik   66 (351)
                      ..+|++||+|||++|+++|++||.++|..||..+++ +|++.||++||.|+++|+++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            357999999999999999999999899999988643 79999999999999998864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.56  E-value=2.1e-15  Score=115.41  Aligned_cols=59  Identities=24%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC--CCCHHHHHHHHHHHhhHHHHH
Q 018746           60 YLRPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR--QRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        60 ~L~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp--gRT~~qcKnRW~~~LkkklkK  118 (351)
                      ...+..++++||.|||++|+++|.+|| ++|..||.+|+  +||+.|||+||+++|++.+.+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            356678899999999999999999999 79999999999  999999999999999987654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=4.6e-15  Score=110.87  Aligned_cols=53  Identities=15%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           62 RPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        62 ~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      .+.+.+++||.|||++|+++|.+|| ++|.+||++||+||+.|||+||+++|.+
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678899999999999999999999 7999999999999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=5.8e-16  Score=115.73  Aligned_cols=54  Identities=20%  Similarity=0.499  Sum_probs=51.3

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746           10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG   64 (351)
Q Consensus        10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (351)
                      +.+++++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            578999999999999999999999889999999999 999999999999999765

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.54  E-value=6.9e-15  Score=107.10  Aligned_cols=49  Identities=27%  Similarity=0.355  Sum_probs=46.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC--CCCHHHHHHHHHHHhhH
Q 018746           66 KRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR--QRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp--gRT~~qcKnRW~~~Lkk  114 (351)
                      ++++||+|||++|+++|.+|| ++|..||.+|+  +||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999998874

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=7.1e-16  Score=117.01  Aligned_cols=59  Identities=20%  Similarity=0.319  Sum_probs=54.0

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCC
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN   69 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~   69 (351)
                      ..|.+++++||+|||++|+++|+.||. +|..||. ++ +|++.||++||.++|+|.++++.
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            578999999999999999999999995 9999999 66 79999999999999999877653

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=7.5e-15  Score=113.87  Aligned_cols=56  Identities=23%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC------CcHHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746           62 RPGIKRGNFTDQEEKMIIHLQALLG------NRWAAIASYLRQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        62 ~P~ikkg~WT~EED~~Ll~lv~k~G------~~W~~IAk~LpgRT~~qcKnRW~~~Lkkklk  117 (351)
                      +|.+.+++||.|||++|+++|.+||      ++|..||.+|++||+.||++||+++|.+.++
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999      7899999999999999999999999987553

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.51  E-value=2.1e-15  Score=109.83  Aligned_cols=50  Identities=30%  Similarity=0.473  Sum_probs=46.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCC-cccccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGL-LRCSKSCRLRWTNYLR   62 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~   62 (351)
                      ++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999976 5999999999999875

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.50  E-value=2.3e-15  Score=123.10  Aligned_cols=92  Identities=22%  Similarity=0.453  Sum_probs=71.9

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchh
Q 018746           64 GIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQY  133 (351)
Q Consensus        64 ~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~  133 (351)
                      ++++++||+|||++|+++|.+||. +|..||.+||+||+.||+.||.++|.+.+++..++.+         ..-+.+|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            367899999999999999999996 7999999999999999999999999887655544432         111234666


Q ss_pred             hhhhhcccccccchhhHHHhhh
Q 018746          134 RDELASASSQQISRGQWERRLQ  155 (351)
Q Consensus       134 ~~~~~s~ss~~~~~gqWe~rLq  155 (351)
                      +....++++...+++.|...|.
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~  102 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMR  102 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHh
Confidence            6666666777777777776554

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.6e-15  Score=117.64  Aligned_cols=61  Identities=21%  Similarity=0.292  Sum_probs=56.4

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCCccccccCCCccccccccccccccccCCCCCCC
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGP-----GNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN   69 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~-----~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~   69 (351)
                      .+|.+++++||+|||++|+++|+.||.     .+|..||..|+ +|+..||+.||++||.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            368899999999999999999999996     78999999999 99999999999999998877764

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.50  E-value=6.2e-15  Score=124.87  Aligned_cols=91  Identities=16%  Similarity=0.298  Sum_probs=71.0

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhcC---------CCCCCch
Q 018746           62 RPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAG---------CSEDNSQ  132 (351)
Q Consensus        62 ~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~~---------~~~~~~~  132 (351)
                      .+..++++||+|||++|+++|.+||.+|..||..||+||..||+.||+++|.+.+++..++.+.         .-+.+|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            4567899999999999999999999999999999999999999999999999887766555431         1123455


Q ss_pred             hhhhhhcccccccchhhHHH
Q 018746          133 YRDELASASSQQISRGQWER  152 (351)
Q Consensus       133 ~~~~~~s~ss~~~~~gqWe~  152 (351)
                      .+.....+++...+++.|..
T Consensus        86 ~Ia~~l~gRt~~~~k~rw~~  105 (126)
T 3osg_A           86 IIAKFFPGRTDIHIKNRWVT  105 (126)
T ss_dssp             HHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHH
Confidence            55555555666666666654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.49  E-value=4.6e-14  Score=104.92  Aligned_cols=50  Identities=26%  Similarity=0.439  Sum_probs=46.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC-CCCHHHHHHHHHHHh
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR-QRTDNDIKNYWNTHL  112 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp-gRT~~qcKnRW~~~L  112 (351)
                      ..+.+++||.|||++|+++|.+|| ++|..||++|+ +||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346688999999999999999999 89999999999 999999999999865

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.49  E-value=2.5e-14  Score=108.65  Aligned_cols=51  Identities=27%  Similarity=0.382  Sum_probs=46.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC--CCCHHHHHHHHHHHhhHH
Q 018746           65 IKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR--QRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp--gRT~~qcKnRW~~~Lkkk  115 (351)
                      .++++||+|||++|+++|.+|| ++|..||++++  +||+.|||+||++++++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4789999999999999999999 58999999976  999999999999988764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=4.9e-15  Score=110.17  Aligned_cols=52  Identities=21%  Similarity=0.477  Sum_probs=48.2

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746           10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      ..+.+++||+|||++|+++|++||.++|..||..|+.+|++.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3577899999999999999999998899999999987899999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.18  E-value=5.8e-15  Score=118.79  Aligned_cols=57  Identities=21%  Similarity=0.258  Sum_probs=53.4

Q ss_pred             ccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746           59 NYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        59 n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk  115 (351)
                      ..+.|.+++++||.|||.+|+++|.+||++|..||.+|||||++||++||+.++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            356789999999999999999999999999999999999999999999999988774

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.45  E-value=2.8e-14  Score=117.53  Aligned_cols=89  Identities=15%  Similarity=0.277  Sum_probs=70.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchhhhh
Q 018746           67 RGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQYRDE  136 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~~~~  136 (351)
                      +++||.|||++|+++|.+||. +|..||.+||+||+.||+.||.++|.+.+++..++.+         ..-+.+|..+..
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            589999999999999999995 8999999999999999999999999987766555543         112335666666


Q ss_pred             hhcccccccchhhHHHhhh
Q 018746          137 LASASSQQISRGQWERRLQ  155 (351)
Q Consensus       137 ~~s~ss~~~~~gqWe~rLq  155 (351)
                      ..++++...+++.|...+.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r   99 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIAR   99 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHh
Confidence            6667777777888876443

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=1.4e-14  Score=111.88  Aligned_cols=58  Identities=17%  Similarity=0.261  Sum_probs=53.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCC
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKR   67 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikk   67 (351)
                      ..|.+++++||+|||++|+++|+.||. +|..||..|+ +|++.||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999995 9999999998 999999999999999887665

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.43  E-value=1.3e-14  Score=123.45  Aligned_cols=91  Identities=20%  Similarity=0.388  Sum_probs=72.3

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchhhhh
Q 018746           67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQYRDE  136 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~~~~  136 (351)
                      +|+||.|||++|+++|.+|| ++|..||.+|||||+.||+.||.++|.+.+++..++.+         ...+.+|..+..
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            68999999999999999999 78999999999999999999999999988766655543         122345666666


Q ss_pred             hhcccccccchhhHHHhhhhH
Q 018746          137 LASASSQQISRGQWERRLQTD  157 (351)
Q Consensus       137 ~~s~ss~~~~~gqWe~rLqt~  157 (351)
                      ...+++...+++.|...|..+
T Consensus        82 ~l~gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           82 LIPGRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             TSTTCCHHHHHHHHHHTTGGG
T ss_pred             HcCCCCHHHHHHHHHHHHHHH
Confidence            666677777777777665543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.37  E-value=2.3e-13  Score=113.00  Aligned_cols=79  Identities=22%  Similarity=0.318  Sum_probs=67.0

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCC---Cccccccccccccccc-----cCCCCCCCCChHHHHH-H
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG---LLRCSKSCRLRWTNYL-----RPGIKRGNFTDQEEKM-I   78 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~---~~Rt~kQCR~RW~n~L-----~P~ikkg~WT~EED~~-L   78 (351)
                      .+...++++||+|||+.|+++|++||.++|..|+..++   .+||..+|++||.|++     +|.+++|.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            45678999999999999999999999889999998652   3899999999999998     6899999888777655 7


Q ss_pred             HHHHHHhC
Q 018746           79 IHLQALLG   86 (351)
Q Consensus        79 l~lv~k~G   86 (351)
                      ++|...+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.34  E-value=3.8e-13  Score=107.33  Aligned_cols=69  Identities=22%  Similarity=0.420  Sum_probs=59.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccc----CCCccccccccccccccc-----cCCCCCC-CCChHHHHHHHHHHHH
Q 018746           15 GPWTPEEDIILVSYIQEHGPGNWRAVPTN----TGLLRCSKSCRLRWTNYL-----RPGIKRG-NFTDQEEKMIIHLQAL   84 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~~----l~~~Rt~kQCR~RW~n~L-----~P~ikkg-~WT~EED~~Ll~lv~k   84 (351)
                      ++||+|||+.|+++|++||.++|..|+..    ++ +||+.+|++||.|++     +|.++++ +...+...+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            48999999999999999998899999985    66 899999999999988     6776655 6777777888888754

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.34  E-value=8.3e-13  Score=102.99  Aligned_cols=51  Identities=12%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      +.+.+++||.+||++|++++.+||    ++|.+||.+|||||.+||++||+.++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    689999999999999999999998764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.33  E-value=2.6e-13  Score=105.84  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=47.8

Q ss_pred             ccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCC
Q 018746            6 CCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKR   67 (351)
Q Consensus         6 cc~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikk   67 (351)
                      -...|.+++++||+|||++|+++|++||. +|..||+.|  +|++.||+.||.. |....+.
T Consensus        15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            45678999999999999999999999995 699999998  6999999999985 5444443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=1.4e-12  Score=103.01  Aligned_cols=48  Identities=13%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           64 GIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        64 ~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      ...+++||.|||++|+++|.+||++|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999865

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=1.2e-12  Score=103.46  Aligned_cols=52  Identities=21%  Similarity=0.446  Sum_probs=48.5

Q ss_pred             cCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccc
Q 018746            7 CDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY   60 (351)
Q Consensus         7 c~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (351)
                      +.+....+++||+|||++|+++|++|| ++|..||.+|+ +|++.||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            355677899999999999999999999 89999999999 89999999999998

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.90  E-value=5.5e-13  Score=107.23  Aligned_cols=54  Identities=26%  Similarity=0.425  Sum_probs=50.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccC
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP   63 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P   63 (351)
                      .-|.+++|+||+|||++|+++|..||. +|..||..|+ +|+..||+.||.++|..
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            457899999999999999999999995 8999999999 99999999999999863

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.23  E-value=1.2e-12  Score=102.11  Aligned_cols=55  Identities=15%  Similarity=0.355  Sum_probs=50.2

Q ss_pred             cCCCCCccCCCCHHHHHHHHHHHHHhC---CCCCccccccCCCcccccccccccccccc
Q 018746            7 CDKIGIKKGPWTPEEDIILVSYIQEHG---PGNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus         7 c~Kp~ikKg~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      .+++.+.+++||+|||++|+++|+.||   +.+|..||..|| +|+..||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            467788999999999999999999999   358999999999 9999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.23  E-value=1.5e-11  Score=98.12  Aligned_cols=48  Identities=25%  Similarity=0.462  Sum_probs=44.5

Q ss_pred             CCCChHHHHHHHHHHHHhCC-cHHHHHHH----cCCCCHHHHHHHHHHHhhHH
Q 018746           68 GNFTDQEEKMIIHLQALLGN-RWAAIASY----LRQRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        68 g~WT~EED~~Ll~lv~k~G~-~W~~IAk~----LpgRT~~qcKnRW~~~Lkkk  115 (351)
                      ++||.|||+.|+++|.+||. +|..|++.    |++||+++||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            48999999999999999996 99999996    89999999999999988754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.19  E-value=1.8e-11  Score=92.64  Aligned_cols=49  Identities=22%  Similarity=0.486  Sum_probs=45.1

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcHHHHH---HHcCCCCHHHHHHHHHHHhhH
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRWAAIA---SYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W~~IA---k~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      ++.+||+|||+.|+++|++||.+|..|+   .++++||..+||+||+++.++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   467899999999999987654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.18  E-value=2.2e-11  Score=103.42  Aligned_cols=54  Identities=26%  Similarity=0.431  Sum_probs=49.7

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHc----CCCCHHHHHHHHHHHhhH
Q 018746           61 LRPGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYL----RQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        61 L~P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~L----pgRT~~qcKnRW~~~Lkk  114 (351)
                      +.+..++++||.|||+.|+++|.+||. +|..|++.+    ++||+.+||+||+++++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            556778999999999999999999996 999999985    899999999999998875

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.17  E-value=9.1e-12  Score=116.40  Aligned_cols=55  Identities=25%  Similarity=0.531  Sum_probs=48.9

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCc------HHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLGNR------WAAIASYLRQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G~~------W~~IAk~LpgRT~~qcKnRW~~~Lkkklk  117 (351)
                      +.+++++||+|||++|+++|.+||++      |..||++|||||++|||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35788999999999999999999975      99999999999999999999999999875

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.16  E-value=3.4e-11  Score=99.97  Aligned_cols=52  Identities=25%  Similarity=0.431  Sum_probs=47.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHc----CCCCHHHHHHHHHHHhhH
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYL----RQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~L----pgRT~~qcKnRW~~~Lkk  114 (351)
                      +..++++||.|||+.|+++|.+||. +|..|++.+    ++||+.+||+||+++++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4568899999999999999999996 999999965    899999999999998865

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.15  E-value=5.5e-11  Score=96.68  Aligned_cols=50  Identities=20%  Similarity=0.383  Sum_probs=45.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746           66 KRGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk  115 (351)
                      .+++||.|||++|++++.+||    ++|.+||.+|||||+++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    68999999999999999999999977663

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.12  E-value=1.1e-10  Score=99.39  Aligned_cols=53  Identities=26%  Similarity=0.438  Sum_probs=47.5

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHc----CCCCHHHHHHHHHHHhhHH
Q 018746           63 PGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYL----RQRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        63 P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~L----pgRT~~qcKnRW~~~Lkkk  115 (351)
                      ...++++||.|||+.|+++|++||. +|..|++.+    ++||+.+||+||+++++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3457899999999999999999996 999999974    8999999999999988653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=1.3e-09  Score=81.66  Aligned_cols=47  Identities=21%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL  112 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L  112 (351)
                      ..++||++|++++++++.+||++|..||.+||+||..||+.+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            35799999999999999999999999999999999999999998644

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.91  E-value=1.9e-09  Score=87.63  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=59.1

Q ss_pred             cccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHc-----CCCCHHHHHHHHHHHhhHHHHHh
Q 018746           50 SKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYL-----RQRTDNDIKNYWNTHLKKKVKKL  119 (351)
Q Consensus        50 ~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~L-----pgRT~~qcKnRW~~~LkkklkK~  119 (351)
                      +.=+.++|.++|.+    .+||.||+..|++|+.+||.+|..|+..+     ++||..++|+||+.+.++.++..
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            45678999999976    89999999999999999999999999999     58999999999999888766554

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.88  E-value=2.1e-10  Score=93.28  Aligned_cols=48  Identities=15%  Similarity=0.359  Sum_probs=43.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC---CCCCccccccCCCccccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHG---PGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      .+++||+|||++|++++..|+   +.+|..||..|| +|+..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            378999999999999999997   467999999999 999999999999874

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.78  E-value=9.8e-09  Score=79.67  Aligned_cols=50  Identities=16%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           64 GIKRGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        64 ~ikkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      ..+.+.||.|||++|.+++.+|+    ++|.+||.+| |||..+|++||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34678999999999999999997    6799999998 99999999999876544

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.71  E-value=1.9e-08  Score=93.38  Aligned_cols=49  Identities=14%  Similarity=0.323  Sum_probs=46.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      ..++||+||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999987766

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.63  E-value=7.3e-09  Score=78.35  Aligned_cols=49  Identities=14%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCcccc---ccCCCcccccccccccccccc
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVP---TNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA---~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      -.+.+||+|||+.|++.|++||. +|..|+   ..+. +|+...+++||.+...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            36899999999999999999996 999999   4554 8999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=9.5e-09  Score=76.88  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=46.1

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      ++..-..++||+||++++++++..|| .+|..||..|+ +|+..||..+|....
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            44556779999999999999999999 69999999999 999999999997643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.49  E-value=9.7e-08  Score=97.16  Aligned_cols=47  Identities=15%  Similarity=0.355  Sum_probs=43.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           68 GNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        68 g~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      .+||++|-.++++++.+||.+|..||++++.||..|||++|..+.++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999865443

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.43  E-value=2.2e-07  Score=72.47  Aligned_cols=47  Identities=13%  Similarity=0.256  Sum_probs=42.6

Q ss_pred             CCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      ...||.+|+++|.+++..|+    .+|.+||.++||||..+|+.||..+++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46899999999999999998    469999999999999999999997643

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.40  E-value=3.1e-08  Score=76.83  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=44.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhC---CCCCccccccCCCccccccccccccccccC
Q 018746           11 GIKKGPWTPEEDIILVSYIQEHG---PGNWRAVPTNTGLLRCSKSCRLRWTNYLRP   63 (351)
Q Consensus        11 ~ikKg~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P   63 (351)
                      ..+++.||.|||++|.+++..|+   ++.|..||..++  |+..+|+.||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence            45688999999999999999998   457999999974  9999999999876543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.31  E-value=5.9e-07  Score=67.06  Aligned_cols=47  Identities=30%  Similarity=0.478  Sum_probs=42.4

Q ss_pred             CCCCChHHHHHHHHHHHHh--------CCc-HHHHHH-HcCCCCHHHHHHHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQALL--------GNR-WAAIAS-YLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~--------G~~-W~~IAk-~LpgRT~~qcKnRW~~~Lk  113 (351)
                      +.+||.|||..|++.|.+|        |+. |..+++ .+|++|-.+||+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 7999999999999998764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.29  E-value=1.1e-07  Score=71.02  Aligned_cols=48  Identities=23%  Similarity=0.491  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCCccccc-cCCCcccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEH--------GPGNWRAVPT-NTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~--------G~~nW~~IA~-~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      +.+||+|||++|+++|.+|        |..-|..++. .++ .++-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5689999999999999999        4446999999 677 9999999999999874

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.15  E-value=3.5e-07  Score=71.27  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCCccccccCCCcccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGP---GNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      ...||.||+++|.+++..|+.   ++|..||..+| +|+..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999974   57999999999 8999999999998754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.12  E-value=6.2e-07  Score=83.32  Aligned_cols=50  Identities=24%  Similarity=0.426  Sum_probs=45.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccccc
Q 018746           11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      .....+||+||++++++++.+|| ++|..||+.++ +|+..||+.+|+++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34578999999999999999999 69999999999 9999999999998864

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=6.5e-06  Score=61.90  Aligned_cols=49  Identities=12%  Similarity=0.178  Sum_probs=44.8

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHH-cCCCCHHHHHHHHHH
Q 018746           62 RPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASY-LRQRTDNDIKNYWNT  110 (351)
Q Consensus        62 ~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~-LpgRT~~qcKnRW~~  110 (351)
                      .|.++..+||+||-++..+.+.+||.+|..|+++ |++||..+|..+|+.
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            3667788999999999999999999999999995 899999999998874

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.03  E-value=1.6e-05  Score=76.88  Aligned_cols=104  Identities=14%  Similarity=0.240  Sum_probs=81.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccc-------ccccc---------------------------
Q 018746           15 GPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRL-------RWTNY---------------------------   60 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~-------RW~n~---------------------------   60 (351)
                      +.||..+...++.++.+||..+|..||..|+ +++...++.       ||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999998 788766532       22110                           


Q ss_pred             ----------------ccCCCCCCCCChHHHHHHHHHHHHhCC----cHHHHH---H---------HcCCCCHHHHHHHH
Q 018746           61 ----------------LRPGIKRGNFTDQEEKMIIHLQALLGN----RWAAIA---S---------YLRQRTDNDIKNYW  108 (351)
Q Consensus        61 ----------------L~P~ikkg~WT~EED~~Ll~lv~k~G~----~W~~IA---k---------~LpgRT~~qcKnRW  108 (351)
                                      ..+..+...||++||..|+.++.+||-    .|..|.   +         ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                            011224568999999999999999994    599996   2         55689999999999


Q ss_pred             HHHhhHHHHHh
Q 018746          109 NTHLKKKVKKL  119 (351)
Q Consensus       109 ~~~LkkklkK~  119 (351)
                      +.+++-..+..
T Consensus       270 ~tLi~~iekE~  280 (304)
T 1ofc_X          270 NTLITLIEREN  280 (304)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99887654443

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.95  E-value=1.4e-05  Score=64.60  Aligned_cols=48  Identities=13%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCC---cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           67 RGNFTDQEEKMIIHLQALLGN---RWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~---~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      ---||.|||+.||...++-|.   .|..||+.|.+|+.+||++||+.+++-
T Consensus        33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            347999999999999999986   799999999999999999999987664

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.78  E-value=4.8e-05  Score=61.74  Aligned_cols=60  Identities=18%  Similarity=0.278  Sum_probs=50.7

Q ss_pred             ccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcC-----CCCHHHHHHHHHHHhhHHHHH
Q 018746           55 LRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLR-----QRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        55 ~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~Lp-----gRT~~qcKnRW~~~LkkklkK  118 (351)
                      +.|..+|.    ...||.||...|++|+.+|+-+|..|+..+.     .||-.++|.||+.+.++.++.
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34555664    3689999999999999999999999999874     799999999999987776543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.75  E-value=7.7e-06  Score=63.71  Aligned_cols=44  Identities=16%  Similarity=0.341  Sum_probs=39.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCCccccccCCCcccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGP---GNWRAVPTNTGLLRCSKSCRLRWT   58 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~~~Rt~kQCR~RW~   58 (351)
                      ...||.||+++|.+++..|+.   ..|.+||..+| +|+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            568999999999999999974   38999999999 999999999985

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.75  E-value=3.9e-06  Score=65.37  Aligned_cols=43  Identities=19%  Similarity=0.386  Sum_probs=38.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----cHHHHHHHcCCCCHHHHHHHHH
Q 018746           67 RGNFTDQEEKMIIHLQALLGN----RWAAIASYLRQRTDNDIKNYWN  109 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~----~W~~IAk~LpgRT~~qcKnRW~  109 (351)
                      ..+||.+|+++|..++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999875

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.80  E-value=7.4e-06  Score=62.89  Aligned_cols=45  Identities=18%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHhCC---cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           69 NFTDQEEKMIIHLQALLGN---RWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        69 ~WT~EED~~Ll~lv~k~G~---~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      -||.|||..|+..+++-|.   .|+.||..| +|+.+||++||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999996   799999999 99999999999987654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.57  E-value=0.00013  Score=55.99  Aligned_cols=44  Identities=14%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHH-HcCCCCHHHHHHHHHH
Q 018746           67 RGNFTDQEEKMIIHLQALLGNRWAAIAS-YLRQRTDNDIKNYWNT  110 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk-~LpgRT~~qcKnRW~~  110 (351)
                      ..+||++|-.+..+.+.+||.+|..|++ .||+||..+|..+|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999999873

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.56  E-value=0.0001  Score=59.59  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=41.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHH
Q 018746           67 RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT  110 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~  110 (351)
                      ...||++|..+..+.+.+||.+|..|+..||+||..+|..+|+.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999998874

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.42  E-value=5.7e-05  Score=56.71  Aligned_cols=49  Identities=12%  Similarity=0.026  Sum_probs=43.9

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc-cCCCccccccccccccc
Q 018746            9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPT-NTGLLRCSKSCRLRWTN   59 (351)
Q Consensus         9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n   59 (351)
                      .|.++...||+||-++..+.+..|| .+|..|++ .++ .|+..||..-|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            4678889999999999999999999 59999998 588 8999999887754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.22  E-value=8.5e-05  Score=75.70  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=44.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746           11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      .....+||.||-+++++++.+|| ++|..|+..++ +|+..||+..|.++-
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34578999999999999999999 69999999999 999999999987653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.17  E-value=0.0004  Score=54.50  Aligned_cols=52  Identities=23%  Similarity=0.472  Sum_probs=41.7

Q ss_pred             CCCCChHHHHHHHHHHHHhC----------CcHHHHHHHcC----CCCHHHHHHHHHHHhhHHHHHh
Q 018746           67 RGNFTDQEEKMIIHLQALLG----------NRWAAIASYLR----QRTDNDIKNYWNTHLKKKVKKL  119 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G----------~~W~~IAk~Lp----gRT~~qcKnRW~~~LkkklkK~  119 (351)
                      ...||.+|-..||+++..+.          ..|..||..|.    .||+.||+.+|.++.+. +++.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~-Yk~~   69 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE-FKKA   69 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHH
Confidence            46899999999999997632          14999999874    79999999999985544 5444

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.04  E-value=0.00014  Score=59.08  Aligned_cols=50  Identities=12%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccCC----Ccccccccccccccccc
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG----LLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L~   62 (351)
                      +...+||.||+..|++++++|+ ..|..|+..+.    .+|+..+.+.||..+.+
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            4558999999999999999999 69999998883    26999999999987654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.72  E-value=0.00047  Score=55.71  Aligned_cols=58  Identities=17%  Similarity=0.401  Sum_probs=46.6

Q ss_pred             CCCccCCCCCc-----cCCCCHHHHHHHHHHHHHhCC--CCCccccccCCCccccccccccccccc
Q 018746            3 RPPCCDKIGIK-----KGPWTPEEDIILVSYIQEHGP--GNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus         3 R~~cc~Kp~ik-----Kg~WT~EEDe~L~~lV~~~G~--~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      ++-|.....++     --.||.|||..|+...++.|.  ..|..||+.++ +|++.|+++||+.++
T Consensus        17 ~s~~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           17 ATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CceeeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence            44565555443     235999999999999999985  47999999998 899999999998643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.68  E-value=0.0001  Score=57.91  Aligned_cols=49  Identities=20%  Similarity=0.544  Sum_probs=39.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---------CCCccccccC---CCccccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHGP---------GNWRAVPTNT---GLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~---------~nW~~IA~~l---~~~Rt~kQCR~RW~n~L   61 (351)
                      +...||.+|-..|++++..+..         ..|..||..|   |..|++.||+.+|.|+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4678999999999999876421         2699999775   46799999999998864

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.66  E-value=0.0052  Score=60.81  Aligned_cols=102  Identities=16%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccc-------ccccc---------------------------
Q 018746           15 GPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRL-------RWTNY---------------------------   60 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~-------RW~n~---------------------------   60 (351)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++.       ||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888899999999998889999998853455544431       11110                           


Q ss_pred             -------------c----cCC-CCCCCCChHHHHHHHHHHHHhC----CcHHHHHHH------------cCCCCHHHHHH
Q 018746           61 -------------L----RPG-IKRGNFTDQEEKMIIHLQALLG----NRWAAIASY------------LRQRTDNDIKN  106 (351)
Q Consensus        61 -------------L----~P~-ikkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~------------LpgRT~~qcKn  106 (351)
                                   |    .+. -+...||++||..||.++.+||    +.|..|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         1    011 1345799999999999999999    459999443            45699999999


Q ss_pred             HHHHHhhHHH
Q 018746          107 YWNTHLKKKV  116 (351)
Q Consensus       107 RW~~~Lkkkl  116 (351)
                      |...+++-..
T Consensus       284 Rc~tLi~~Ie  293 (374)
T 2y9y_A          284 RGNTLLQCLE  293 (374)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999886543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.59  E-value=0.00058  Score=55.15  Aligned_cols=44  Identities=14%  Similarity=0.244  Sum_probs=40.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTN   59 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n   59 (351)
                      ...||+||.+++.+.+..|| .+|..|+..++ .|+..+|.+.|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence            46899999999999999999 69999999998 9999999987753

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.50  E-value=0.0008  Score=51.48  Aligned_cols=45  Identities=9%  Similarity=0.155  Sum_probs=40.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccc-cCCCccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPT-NTGLLRCSKSCRLRWTN   59 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n   59 (351)
                      ....||+||-.+..+.+..|| .+|..|+. .++ +|+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            456899999999999999999 59999999 488 9999999887764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.33  E-value=0.00061  Score=52.31  Aligned_cols=46  Identities=15%  Similarity=0.346  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCCccccccCCCcccccccccccccccc
Q 018746           15 GPWTPEEDIILVSYIQEHGP--GNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~--~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      -.||.|||..|+..+++.|+  .-|..||..+  +|++.|+.+||...+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            46999999999999999985  4799999888  4999999999988653

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=93.52  E-value=0.052  Score=48.50  Aligned_cols=38  Identities=32%  Similarity=0.526  Sum_probs=31.3

Q ss_pred             CccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc
Q 018746            5 PCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPT   42 (351)
Q Consensus         5 ~cc~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~   42 (351)
                      |++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus       125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            44555555566799999999999999999999999864

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.19  E-value=0.31  Score=36.80  Aligned_cols=48  Identities=13%  Similarity=0.083  Sum_probs=40.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc---HHHHHHHc--CCCCHHHHHHHHHHHh
Q 018746           65 IKRGNFTDQEEKMIIHLQALLGNR---WAAIASYL--RQRTDNDIKNYWNTHL  112 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G~~---W~~IAk~L--pgRT~~qcKnRW~~~L  112 (351)
                      ..+-.||+|..+..+++|.++|..   +..|-+.|  +|.|..+|+.+.+.+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            346689999999999999999954   88999987  4899999999877543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.89  E-value=0.029  Score=45.44  Aligned_cols=50  Identities=12%  Similarity=0.174  Sum_probs=41.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccCC----Ccccccccccccccccc
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG----LLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L~   62 (351)
                      ++...||.||...|.+++++|. -.|-.|+....    ..|+..+.++||..+..
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            4457899999999999999999 69999987653    25899999999987643

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.18  E-value=0.18  Score=48.69  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=42.6

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      .+.||..+...++.++.+|| ..|..||..|+|+|..+|+.++..+..+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999 5799999999999999998887766543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=91.60  E-value=0.28  Score=43.62  Aligned_cols=52  Identities=23%  Similarity=0.300  Sum_probs=43.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhC---CcHHHHHHH--cCCCCHHHHHHHHHHHhhHHHH
Q 018746           66 KRGNFTDQEEKMIIHLQALLG---NRWAAIASY--LRQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G---~~W~~IAk~--LpgRT~~qcKnRW~~~Lkkklk  117 (351)
                      ....||+.|-..|+.++.+||   .+|..|+..  |.+++...|+.++..++..-.+
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~   62 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK   62 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999   579999875  7899999999988877665433

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=87.01  E-value=0.43  Score=45.19  Aligned_cols=28  Identities=32%  Similarity=0.586  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccc
Q 018746           15 GPWTPEEDIILVSYIQEHGPGNWRAVPT   42 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~   42 (351)
                      ..|+.+||..|+..|.+||.++|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-20
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-08
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-17
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	9e-07
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-16
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-11
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	5e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	9e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	8e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-07
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	8e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-05
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	0.001

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (196), Expect = 8e-20
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          + KGPWT EED  L+  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 65  IKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLK 113
           + +G +T +E++ +I L    G  RW+ IA +L+ R     +  W+ HL 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (186), Expect = 3e-18
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
          K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 67  RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLK 113
           +  +T +E++ +  L    G + W  IA+YL  RTD   ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (175), Expect = 7e-17
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
          KK  WT EE   + + +Q++G GNW A+  N   + R +   + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 9e-07
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 66  KRGNFTDQEEKMIIHLQALLG-NRWAAIASY--LRQRTDNDIKNYWNTHLKKKV 116
           K+  +T +E + +       G   WAAI+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 2e-16
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLR 62
          K+  W  EED  L S ++++G GNW  +  +     R S   + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 14 KGPWTPEEDIILVSYIQEHGPG-----NWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRG 68
          K  +T EED  ++  ++++         +  +           S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYV 59

Query: 69 NFTDQEEKMIIHLQA 83
             D+  K++     
Sbjct: 60 YEVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 67  RGNFTDQEEKMIIHLQALLGNR------WAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118
           + +FTD+E++ I+ +      R      +  I+ Y+   T N I++ +  +L K+++ 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY 58

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 67.4 bits (164), Expect = 5e-15
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRAVP---TNTGLLRCSKSCRLRWTNYLR-----PGIKR 67
          P++  E   LV  ++  G G WR V     +    R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GNFTDQEE-KMIIHLQALLGNR 88
          G    Q+    ++   A    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (145), Expect = 9e-13
 Identities = 21/47 (44%), Positives = 33/47 (70%)

Query: 67  RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLK 113
           + ++T++E+++I      LGNRWA IA  L  RTDN IKN+WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (131), Expect = 8e-11
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR 62
          K  WT EED I+    +  G           G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 8/66 (12%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNW---RAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
             WT EE  +    + + G       + + +     R     +     Y +  +K G  
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRRWTKISKLIGS-----RTVLQVKSYARQYFKNKVKCGLD 56

Query: 71 TDQEEK 76
           +   +
Sbjct: 57 KETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 7e-10
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 70  FTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118
           +T +E+++     A  G RW  I+  +  RT   +K+Y   + K KVK 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 66  KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114
               +++QE++            +  IAS+L ++T  +   Y+    K 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 2/50 (4%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR 62
              W+ +E         +H   N+  + +     +    C L +    +
Sbjct: 16 VMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTKK 63

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 7/49 (14%), Positives = 23/49 (46%)

Query: 66  KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114
               +T +E+ + +      G  + AI+  +  ++   +KN++  + ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 6e-07
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 8/53 (15%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNW---RAVPTNTGLLRCSKSCRLRWTNYLR 62
              WT EE ++ V  I+++G         +       +     +  + NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGN-----KSVVQVKNFFVNYRR 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 8e-10
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 8  DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL--RCSKSCRLRW 57
          ++    + PWT  +  +L   +Q++  G+          +  +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 62  RPGIKRGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYW 108
           R       +T  ++K++            + W  IA  +  ++  D    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 17 WTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60
          WT +E++ L+  + + G GNW+ V       +  + C   +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL--RCSKSCRLRWTNYLRPGIKR 67
          PW+ +E+      +  +              +  R  +  +  +   L   IK 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 70  FTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKL 119
           ++ +E K      A+      +RWA +A  +  RT  ++K ++   L + +K +
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKYI 56

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 8/61 (13%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 56  RWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNR---WAAIASYLRQRTDNDIKNYWNTHL 112
             +     G K   +T + +++I+ +    G +   ++ I+  L  +T  ++ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 113 K 113
           +
Sbjct: 82  Q 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.71
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.55
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.54
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.5
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.45
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.42
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.38
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.37
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.35
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.26
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.25
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.24
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.24
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.17
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.12
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.08
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.83
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.82
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.64
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.08
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.06
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.51
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.39
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.89
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.43
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.98
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	93.98
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.16
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	91.68
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.89
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	87.06

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=5.1e-20  Score=146.07  Aligned_cols=70  Identities=17%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHH
Q 018746           14 KGPWTPEEDIILVSYIQEHGPG-----NWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQAL   84 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~-----nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k   84 (351)
                      |++||+|||++|+++|++||..     +|..||..|+ +|+++|||+||.++|+|.+++++||.+||.+|+..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999864     3999999998 99999999999999999999999999999998866543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.1e-18  Score=125.94  Aligned_cols=52  Identities=42%  Similarity=0.841  Sum_probs=50.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746           12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG   64 (351)
Q Consensus        12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (351)
                      |+||+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.2e-17  Score=119.45  Aligned_cols=50  Identities=30%  Similarity=0.672  Sum_probs=48.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG   64 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (351)
                      |++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=9e-17  Score=113.68  Aligned_cols=47  Identities=45%  Similarity=0.848  Sum_probs=45.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      +++||.|||++|+++|.+||++|..||++|||||+++||+||+.+++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.6e-16  Score=114.42  Aligned_cols=50  Identities=30%  Similarity=0.676  Sum_probs=47.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           65 IKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        65 ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      +++|+||.|||++|+++|.+|| ++|..||++|++||+.||++||+++|+|
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 6899999999999999999999999876

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.3e-15  Score=107.28  Aligned_cols=48  Identities=29%  Similarity=0.581  Sum_probs=45.6

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      +++||.+||++|+++|.+|| ++|..||.+|||||+.||++||+++|+|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999999976

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.54  E-value=5.7e-16  Score=121.35  Aligned_cols=74  Identities=22%  Similarity=0.428  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccC---CCcccccccccccccccc-----CCCCCCCCChHHHHHHHHHHHHhC
Q 018746           15 GPWTPEEDIILVSYIQEHGPGNWRAVPTNT---GLLRCSKSCRLRWTNYLR-----PGIKRGNFTDQEEKMIIHLQALLG   86 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~~l---~~~Rt~kQCR~RW~n~L~-----P~ikkg~WT~EED~~Ll~lv~k~G   86 (351)
                      .+||+|||++|+.+|++||.++|..|+..+   ..+|++.||++||.|+|+     +..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            379999999999999999999999999752   238999999999999984     677888998776   555566666


Q ss_pred             CcHHH
Q 018746           87 NRWAA   91 (351)
Q Consensus        87 ~~W~~   91 (351)
                      .+|.+
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-15  Score=110.82  Aligned_cols=54  Identities=33%  Similarity=0.551  Sum_probs=48.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCC-CccccccccccccccccCCCC
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG-LLRCSKSCRLRWTNYLRPGIK   66 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~-~~Rt~kQCR~RW~n~L~P~ik   66 (351)
                      |+++||+|||++|+++|++||.++|..|+..++ .+|++.||++||.|+++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999989999998732 279999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=8e-15  Score=115.80  Aligned_cols=59  Identities=22%  Similarity=0.398  Sum_probs=54.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc------HHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhcC
Q 018746           67 RGNFTDQEEKMIIHLQALLGNR------WAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAG  125 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~------W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~~  125 (351)
                      +++||+|||++|+++|.+||.+      |..||.+|||||++|||+||+++|.+.+++..++...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~e   65 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKF   65 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCch
Confidence            5799999999999999999964      9999999999999999999999999999877666653

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-13  Score=99.50  Aligned_cols=48  Identities=27%  Similarity=0.377  Sum_probs=43.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC--CCCHHHHHHHHHHHhh
Q 018746           66 KRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR--QRTDNDIKNYWNTHLK  113 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp--gRT~~qcKnRW~~~Lk  113 (351)
                      ++++||+|||++|+++|.+|| ++|..|++.++  +||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 58999999865  9999999999998654

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7e-14  Score=101.39  Aligned_cols=50  Identities=28%  Similarity=0.400  Sum_probs=45.5

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CcHHHHHHH--cCCCCHHHHHHHHHHHhhHH
Q 018746           66 KRGNFTDQEEKMIIHLQALLG-NRWAAIASY--LRQRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~--LpgRT~~qcKnRW~~~Lkkk  115 (351)
                      ++.+||.|||++|+++|.+|| ++|..|++.  |++||+.||++||++++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999 689999998  56999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-14  Score=104.54  Aligned_cols=49  Identities=31%  Similarity=0.430  Sum_probs=44.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccCC-Cccccccccccccccc
Q 018746           13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG-LLRCSKSCRLRWTNYL   61 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~-~~Rt~kQCR~RW~n~L   61 (351)
                      ++++||+|||+.|+++|++||.++|..|+..++ .+|++.||++||.|+.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999999999997653 3799999999999875

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.8e-14  Score=101.71  Aligned_cols=47  Identities=26%  Similarity=0.494  Sum_probs=44.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      |.+||+|||++|+++|++||. +|..||..|+ +|++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999995 8999999998 9999999999998873

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-14  Score=101.09  Aligned_cols=44  Identities=25%  Similarity=0.684  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccc
Q 018746           16 PWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY   60 (351)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (351)
                      .||+|||++|+++|++||.++|..||..|+ +|++.||+.||.+|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999999 99999999999886

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.9e-13  Score=99.72  Aligned_cols=50  Identities=30%  Similarity=0.446  Sum_probs=46.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746           68 GNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVK  117 (351)
Q Consensus        68 g~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkkklk  117 (351)
                      ..||.|||.+|+++|.+||.+|..||.+||+||+.||++||+.++++..+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999999998887553

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.1e-13  Score=93.97  Aligned_cols=43  Identities=19%  Similarity=0.356  Sum_probs=41.0

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           69 NFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        69 ~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      .||.+||.+|+++|.+|| ++|..||.+|++||+.||+.||+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.5e-12  Score=95.48  Aligned_cols=50  Identities=14%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCC----cHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           62 RPGIKRGNFTDQEEKMIIHLQALLGN----RWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        62 ~P~ikkg~WT~EED~~Ll~lv~k~G~----~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      .+...+++||.|||.+|+++|.+||.    +|..||.+|||||..||++||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567889999999999999999995    599999999999999999999863

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.4e-13  Score=97.55  Aligned_cols=51  Identities=18%  Similarity=0.425  Sum_probs=46.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCC---CCccccccCCCccccccccccccc
Q 018746            8 DKIGIKKGPWTPEEDIILVSYIQEHGPG---NWRAVPTNTGLLRCSKSCRLRWTN   59 (351)
Q Consensus         8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~---nW~~IA~~l~~~Rt~kQCR~RW~n   59 (351)
                      +++...+++||+|||++|+++|..||.+   +|..||..|| +|++.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5677889999999999999999999975   5999999999 9999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-13  Score=101.69  Aligned_cols=59  Identities=19%  Similarity=0.313  Sum_probs=53.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHH
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQE   74 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EE   74 (351)
                      ...||+|||++|+++|..|| .+|..||..|+ +||+.||+.||.+++++..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            36799999999999999999 69999999999 9999999999999998887777766544

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.24  E-value=7.4e-12  Score=92.67  Aligned_cols=51  Identities=24%  Similarity=0.447  Sum_probs=44.4

Q ss_pred             CCCChHHHHHHHHHHHHhCC----cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHh
Q 018746           68 GNFTDQEEKMIIHLQALLGN----RWAAIASYLRQRTDNDIKNYWNTHLKKKVKKL  119 (351)
Q Consensus        68 g~WT~EED~~Ll~lv~k~G~----~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~  119 (351)
                      .+||.|||.+|+++|.+||.    +|.+||.+|||||.+||++||+. |.+.++++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~-L~~dik~i   56 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI-LVEDIKYI   56 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH-HHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH-HHHHhhcc
Confidence            48999999999999999995    59999999999999999999965 44555544

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=9.7e-12  Score=99.39  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             ccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCc---HHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746           47 LRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNR---WAAIASYLRQRTDNDIKNYWNTHLKKK  115 (351)
Q Consensus        47 ~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~---W~~IAk~LpgRT~~qcKnRW~~~Lkkk  115 (351)
                      ..+..+..-++.+...++.+...||.|||++||+.++++|.+   |..||+.|+||+++|||+||..+++-.
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            566777888888888888888899999999999999999977   999999999999999999999876653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.17  E-value=1.9e-11  Score=95.24  Aligned_cols=51  Identities=24%  Similarity=0.412  Sum_probs=45.7

Q ss_pred             CCCChHHHHHHHHHHHHhC-CcHHHHHHH----cCCCCHHHHHHHHHHHhhHHHHH
Q 018746           68 GNFTDQEEKMIIHLQALLG-NRWAAIASY----LRQRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        68 g~WT~EED~~Ll~lv~k~G-~~W~~IAk~----LpgRT~~qcKnRW~~~LkkklkK  118 (351)
                      .+||.|||++|+++|.+|| ++|..|++.    +++||+.||++||+++|+.....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            3899999999999999999 589999986    57999999999999999876544

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.12  E-value=1.8e-12  Score=96.04  Aligned_cols=44  Identities=14%  Similarity=0.325  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---CccccccCCCccccccccccccc
Q 018746           15 GPWTPEEDIILVSYIQEHGPGN---WRAVPTNTGLLRCSKSCRLRWTN   59 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~~n---W~~IA~~l~~~Rt~kQCR~RW~n   59 (351)
                      .+||+|||++|+++|+.||.+.   |..||..|+ +|++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999754   999999999 9999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5e-11  Score=88.35  Aligned_cols=48  Identities=15%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746           67 RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK  114 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk  114 (351)
                      ...||++|+.+|++++..||.+|..||.+||+||..||++||+.+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999986543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.8e-11  Score=89.88  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=43.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      ...+||+||+.+|++++.+||.+|..||.+||+||..||+++|+..
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999854

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.8e-10  Score=84.31  Aligned_cols=51  Identities=14%  Similarity=0.151  Sum_probs=44.9

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746            9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus         9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      +......+||+|||++|+++|..|| .+|..||..|+ +|+..||+.+|....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3445567899999999999999999 59999999999 999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.2e-10  Score=83.94  Aligned_cols=47  Identities=26%  Similarity=0.495  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      ..+||+|||++|.+++..|| .+|..||..|+ +|+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            56799999999999999999 68999999999 9999999999998753

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=2.2e-09  Score=85.54  Aligned_cols=51  Identities=22%  Similarity=0.407  Sum_probs=44.9

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCC--CccccccCCCccccccccccccccc
Q 018746           10 IGIKKGPWTPEEDIILVSYIQEHGPGN--WRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        10 p~ikKg~WT~EEDe~L~~lV~~~G~~n--W~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      .+.+...||.|||.+|++.++++|...  |..|++.|+ +|++.|||.||..++
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            455677899999999999999999643  999999998 999999999997654

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.8e-06  Score=61.87  Aligned_cols=43  Identities=19%  Similarity=0.294  Sum_probs=39.4

Q ss_pred             CCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           68 GNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        68 g~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      ..||.+|+.+|.+++.+|.    .+|.+||.++ |||..+|..|++.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            4799999999999999996    5799999999 99999999999753

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=3.4e-06  Score=60.63  Aligned_cols=43  Identities=14%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHHH-cCCCCHHHHHHHHHH
Q 018746           68 GNFTDQEEKMIIHLQALLGNRWAAIASY-LRQRTDNDIKNYWNT  110 (351)
Q Consensus        68 g~WT~EED~~Ll~lv~k~G~~W~~IAk~-LpgRT~~qcKnRW~~  110 (351)
                      ..||+||..++.+.+.+||.+|..|++. +|+||..||.++|+.
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3799999999999999999999999986 699999999999874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5.5e-06  Score=60.24  Aligned_cols=45  Identities=18%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCCccccccCCCccccccccccccccc
Q 018746           15 GPWTPEEDIILVSYIQEHGP---GNWRAVPTNTGLLRCSKSCRLRWTNYL   61 (351)
Q Consensus        15 g~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (351)
                      +.||+||+.+|.+++.+|+.   ..|..||..+|  |+..+|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            57999999999999999964   46999999996  99999999997543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=2.2e-05  Score=56.24  Aligned_cols=43  Identities=9%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccc-CCCcccccccccccccc
Q 018746           16 PWTPEEDIILVSYIQEHGPGNWRAVPTN-TGLLRCSKSCRLRWTNY   60 (351)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~-l~~~Rt~kQCR~RW~n~   60 (351)
                      .||+||-.++.+++..|| .+|..|++. ++ +|+..||...|.+.
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            699999999999999999 599999986 56 99999999988653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00062  Score=49.05  Aligned_cols=47  Identities=28%  Similarity=0.435  Sum_probs=40.5

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-HHHHHH-HcCCCCHHHHHHHHHHHhh
Q 018746           67 RGNFTDQEEKMIIHLQALLG--------NR-WAAIAS-YLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G--------~~-W~~IAk-~LpgRT~~qcKnRW~~~Lk  113 (351)
                      +.+||.+||+.|++.|.++.        +. |..+++ .++.+|-...|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999873        22 999996 5799999999999988775

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.0015  Score=44.59  Aligned_cols=45  Identities=24%  Similarity=0.471  Sum_probs=39.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHHHc---CCCCHHHHHHHHHHH
Q 018746           67 RGNFTDQEEKMIIHLQALLGNRWAAIASYL---RQRTDNDIKNYWNTH  111 (351)
Q Consensus        67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~L---pgRT~~qcKnRW~~~  111 (351)
                      +..||+||-..|++.|+.+|+.|..|-=.+   |||+..++..+|+.+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999999999997655   599999999988764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00051  Score=49.51  Aligned_cols=48  Identities=21%  Similarity=0.448  Sum_probs=39.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------CCccccc-cCCCcccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPG--------NWRAVPT-NTGLLRCSKSCRLRWTNYLR   62 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~--------nW~~IA~-~l~~~Rt~kQCR~RW~n~L~   62 (351)
                      +.+||.|||+.|+++|..+...        =|..++. .++ .++-.+-|+||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4589999999999999998432        3888874 455 7899999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.43  E-value=0.0043  Score=45.18  Aligned_cols=47  Identities=13%  Similarity=0.123  Sum_probs=39.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcH---HHHHHHc--CCCCHHHHHHHHHHHh
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNRW---AAIASYL--RQRTDNDIKNYWNTHL  112 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~W---~~IAk~L--pgRT~~qcKnRW~~~L  112 (351)
                      .+-.||+||..+.++++..||..|   ..|...|  +++|..||+.+...+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            355899999999999999999877   5777775  7999999999876653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.03  Score=41.20  Aligned_cols=48  Identities=13%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCc----HHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746           66 KRGNFTDQEEKMIIHLQALLGNR----WAAIASYLRQRTDNDIKNYWNTHLK  113 (351)
Q Consensus        66 kkg~WT~EED~~Ll~lv~k~G~~----W~~IAk~LpgRT~~qcKnRW~~~Lk  113 (351)
                      ..+.|+++|-.+|-.++..+...    |..||..++.||+..|..+|...++
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            45689999999999999988743    9999999999999999998876533

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.98  E-value=0.012  Score=42.75  Aligned_cols=47  Identities=9%  Similarity=0.080  Sum_probs=35.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCC--ccccccCC-Ccccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNW--RAVPTNTG-LLRCSKSCRLRWTNY   60 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW--~~IA~~l~-~~Rt~kQCR~RW~n~   60 (351)
                      +-.||+||.++++.+|+.+|...|  ..|...|+ .+++..||+-+.+.|
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            567999999999999999996444  35655543 167888888766554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.016  Score=42.72  Aligned_cols=50  Identities=22%  Similarity=0.426  Sum_probs=43.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC---CCCCccccccCCCccccccccccccccccC
Q 018746           13 KKGPWTPEEDIILVSYIQEHG---PGNWRAVPTNTGLLRCSKSCRLRWTNYLRP   63 (351)
Q Consensus        13 kKg~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P   63 (351)
                      ..+.|+++|=++|-.++....   ++-|..||..+| .|++..|...|...+.-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            456899999999999998764   457999999999 99999999999877643

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.68  E-value=0.27  Score=39.87  Aligned_cols=55  Identities=18%  Similarity=0.435  Sum_probs=44.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC-Cc---HHHHHH------------HcCCCCHHHHHHHHHHHhhHHHHH
Q 018746           64 GIKRGNFTDQEEKMIIHLQALLG-NR---WAAIAS------------YLRQRTDNDIKNYWNTHLKKKVKK  118 (351)
Q Consensus        64 ~ikkg~WT~EED~~Ll~lv~k~G-~~---W~~IAk------------~LpgRT~~qcKnRW~~~LkkklkK  118 (351)
                      ..++..+|+|||..|+..+.+|| .+   |..|-.            +|..||+..|..|.+.+|+-..+.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            34555799999999999999999 55   988743            234699999999999988775544

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.89  E-value=0.31  Score=33.70  Aligned_cols=43  Identities=16%  Similarity=0.267  Sum_probs=38.4

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746           69 NFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH  111 (351)
Q Consensus        69 ~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~  111 (351)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+.+....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            489999999999999999 5799999999999999999876543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.06  E-value=0.086  Score=35.60  Aligned_cols=45  Identities=16%  Similarity=0.203  Sum_probs=36.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccCC--Cccccccccccccc
Q 018746           14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG--LLRCSKSCRLRWTN   59 (351)
Q Consensus        14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~--~~Rt~kQCR~RW~n   59 (351)
                      +..||.||-.-|...|+++| ..|..|-=.+|  .||+......+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            35799999999999999999 69999974443  36888777776654