Citrus Sinensis ID: 018755

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE
cccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHcccHHHHHHHHcccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccEEEEcccccHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHccc
msskekptlggtrikprkrniaapldpaafSDAVVQIYLDNAGDLELIAKCIessdlnfsrygdTFFEVVFtggrtqpgttkpdegerhsysiidcepqreailpSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSqklsglppetvfqpllkdnlvgkGLVLSFITDFFKEYLVDNSLDDLIAILKRGkmednlldffpsskrsaegfsEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSlydqdvlaeDTILYWFrkgtnpkgrQTFVKALEPFVKWLEEAEEEE
msskekptlggtrikprkrniaAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFtggrtqpgttkpdegerHSYSiidcepqreaILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE
MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKnqqqnanaaLRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE
************************LDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGG****************YSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPS****AEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKW********
************************LDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWF**************ALEPFVKW*EEA****
***********TRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQP**********HSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE
*******TLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEA****
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MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query351 2.2.26 [Sep-21-2011]
Q6PD83419 Basic leucine zipper and yes no 0.971 0.813 0.281 2e-46
Q2L4X1419 Basic leucine zipper and N/A no 0.977 0.818 0.276 4e-41
Q91VK1419 Basic leucine zipper and yes no 0.977 0.818 0.276 4e-41
Q4R6R4419 Basic leucine zipper and N/A no 0.977 0.818 0.276 5e-41
Q9Y6E2419 Basic leucine zipper and yes no 0.977 0.818 0.276 5e-41
Q9WTT7419 Basic leucine zipper and yes no 0.977 0.818 0.276 5e-41
Q9VNE2422 Protein extra bases OS=Dr yes no 0.968 0.805 0.296 3e-40
Q803N9418 Basic leucine zipper and no no 0.968 0.813 0.270 4e-39
Q8AVM7419 Basic leucine zipper and N/A no 0.968 0.811 0.263 3e-38
Q6P2Z0419 Basic leucine zipper and yes no 0.968 0.811 0.261 3e-38
>sp|Q6PD83|BZW1A_DANRE Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio GN=bzw1a PE=2 SV=1 Back     alignment and function desciption
 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 195/405 (48%), Gaps = 64/405 (15%)

Query: 4   KEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSD--LNFSR 61
           ++KPTL G R K RKR+     DP+ F +++VQ       DLE +AK +++S   L++ R
Sbjct: 6   QQKPTLTGQRFKTRKRDEKERFDPSQFQESIVQGLNQTGTDLEAVAKFLDASGAKLDYRR 65

Query: 62  YGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLI 121
           Y +T F+++  GG   PG T  D+  R  Y +       E +        K++RR  +L 
Sbjct: 66  YAETLFDILVAGGMLAPGGTLSDDLTRTEYCLFTASEDLETMQAYAQVFNKLIRRYKYLE 125

Query: 122 KNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLV 181
           K  E   ++ +  L+ F E+ER KLA+ T +  +   +G    ++   L  +NLV +G+ 
Sbjct: 126 KGFEEEIKKLLLFLKGFTESERNKLAMLTGILLA---NGNISASILNSLFNENLVKEGVS 182

Query: 182 LSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFT-------- 233
            +F    FK ++ +  ++ + A L++  M++ L++ FP++KRS E FS++FT        
Sbjct: 183 AAFAVKLFKSWINEKDINSVAASLRKVGMDNRLMELFPANKRSCEHFSKYFTDAGLKELS 242

Query: 234 ---------------------------ILWDIL----------------MDAVQWSG--- 247
                                       L DI+                M  + W+    
Sbjct: 243 DFARNQQSIGARKELQKELQEQMSRGETLKDIIAYVREEMKKTSISEQTMIGIVWTSVMS 302

Query: 248 -----KNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEI 302
                K ++     A++ +K ++ LL  F +    EL L+ K+Q  CY++   MK F +I
Sbjct: 303 SVEWNKKEELVTEQAIKHLKQYSPLLKAFTSQGLSELTLLLKIQEYCYDNIHFMKAFQKI 362

Query: 303 VRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEA 347
           V  LY  DVL+E+ IL W+ +G   KG+  F++ ++ FV+WL+ A
Sbjct: 363 VVLLYKADVLSEEVILKWYTEGHVAKGKSVFLEQMKKFVEWLKNA 407
Enhances histone H4 gene transcription but does not seem to bind DNA directly.
Danio rerio (taxid: 7955)
>sp|Q2L4X1|BZW2_MUSMM Basic leucine zipper and W2 domain-containing protein 2 OS=Mus musculus molossinus GN=Bzw2 PE=2 SV=1 Back     alignment and function description
>sp|Q91VK1|BZW2_MOUSE Basic leucine zipper and W2 domain-containing protein 2 OS=Mus musculus GN=Bzw2 PE=1 SV=1 Back     alignment and function description
>sp|Q4R6R4|BZW2_MACFA Basic leucine zipper and W2 domain-containing protein 2 OS=Macaca fascicularis GN=BZW2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6E2|BZW2_HUMAN Basic leucine zipper and W2 domain-containing protein 2 OS=Homo sapiens GN=BZW2 PE=1 SV=1 Back     alignment and function description
>sp|Q9WTT7|BZW2_RAT Basic leucine zipper and W2 domain-containing protein 2 OS=Rattus norvegicus GN=Bzw2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VNE2|EXBA_DROME Protein extra bases OS=Drosophila melanogaster GN=exba PE=1 SV=1 Back     alignment and function description
>sp|Q803N9|BZW1B_DANRE Basic leucine zipper and W2 domain-containing protein 1-B OS=Danio rerio GN=bzw1b PE=2 SV=2 Back     alignment and function description
>sp|Q8AVM7|BZW1_XENLA Basic leucine zipper and W2 domain-containing protein 1 OS=Xenopus laevis GN=bzw1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P2Z0|BZW1_XENTR Basic leucine zipper and W2 domain-containing protein 1 OS=Xenopus tropicalis GN=bzw1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
297837893411 eIF4-gamma/eIF5/eIF2-epsilon domain-cont 0.980 0.836 0.680 1e-154
297801152411 eIF4-gamma/eIF5/eIF2-epsilon domain-cont 0.980 0.836 0.683 1e-153
18408228411 armadillo/beta-catenin-like repeat-conta 0.980 0.836 0.675 1e-153
18421544411 armadillo/beta-catenin-like repeat-conta 0.980 0.836 0.680 1e-152
255547564411 translation initiation factor, putative 0.980 0.836 0.695 1e-152
4646206426 Contains similarity to gb|D13630 KIAA000 0.977 0.805 0.674 1e-152
294464795411 unknown [Picea sitchensis] 0.980 0.836 0.668 1e-148
9759036429 unnamed protein product [Arabidopsis tha 0.977 0.799 0.660 1e-147
21554220411 unknown [Arabidopsis thaliana] 0.980 0.836 0.653 1e-146
449442269411 PREDICTED: basic leucine zipper and W2 d 0.980 0.836 0.665 1e-142
>gi|297837893|ref|XP_002886828.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332669|gb|EFH63087.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/404 (68%), Positives = 307/404 (75%), Gaps = 60/404 (14%)

Query: 1   MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFS 60
           MSSKEKPTLGGTRIK RKRNIAAPLDPAAFSDAVVQIY+DNAGDLEL+AK +ESSDLNFS
Sbjct: 1   MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYVDNAGDLELVAKSLESSDLNFS 60

Query: 61  RYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFL 120
           RYGD FFEVVF GGRTQ G+ K DEGERH YSIIDCEP REAILPSV+YIQKILRR+ FL
Sbjct: 61  RYGDIFFEVVFIGGRTQTGSVKSDEGERHPYSIIDCEPTREAILPSVVYIQKILRRKAFL 120

Query: 121 IKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGL 180
           IKNLENVTRRF+QSLELFEENERKKLAIFTALAFSQKLSGLP ETVFQPLLKDNLV KG+
Sbjct: 121 IKNLENVTRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPAETVFQPLLKDNLVAKGI 180

Query: 181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFT------- 233
           VL+F+TDFF EYLV+NSLDDLI+IL+RGKM+D LL+F P +KR+ E F+EHFT       
Sbjct: 181 VLNFVTDFFNEYLVENSLDDLISILRRGKMDDKLLEFLPPTKRTTESFAEHFTKAGLTAL 240

Query: 234 -----------------------ILWDILMDAVQWSGKNQQQNA---------------- 254
                                  +  +I +D V  + K Q ++A                
Sbjct: 241 VEYNERKIFEVKLKEIKAVLTSQVTEEINVDEVIETVKQQVKDAKLPEIEVVHVIWDGIM 300

Query: 255 --------------NAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFP 300
                         NA LRQVKTWA LLNT C +  +E+ELMYKVQMQCYEDAKLMK+FP
Sbjct: 301 NAVQWSGKNQQQNSNAVLRQVKTWAPLLNTLCCSGNMEMELMYKVQMQCYEDAKLMKVFP 360

Query: 301 EIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWL 344
           E+VRSLY+ DVLAEDTIL+W+RKGTNPKGRQ FVK LEPFV WL
Sbjct: 361 EVVRSLYELDVLAEDTILHWYRKGTNPKGRQAFVKGLEPFVNWL 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297801152|ref|XP_002868460.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297314296|gb|EFH44719.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18408228|ref|NP_564845.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|15810285|gb|AAL07030.1| unknown protein [Arabidopsis thaliana] gi|29824395|gb|AAP04157.1| unknown protein [Arabidopsis thaliana] gi|332196224|gb|AEE34345.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18421544|ref|NP_568534.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|16323077|gb|AAL15273.1| AT5g36230/T30G6_9 [Arabidopsis thaliana] gi|22531269|gb|AAM97138.1| putative protein [Arabidopsis thaliana] gi|332006677|gb|AED94060.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255547564|ref|XP_002514839.1| translation initiation factor, putative [Ricinus communis] gi|223545890|gb|EEF47393.1| translation initiation factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|4646206|gb|AAD26879.1|AC007230_13 Contains similarity to gb|D13630 KIAA0005 gene from Homo sapiens. ESTs gb|T45345, gb|T21086, gb|R90360, gb|T20468, gb|T45191 and gb|AI100459 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|294464795|gb|ADE77903.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|9759036|dbj|BAB09363.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554220|gb|AAM63296.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449442269|ref|XP_004138904.1| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Cucumis sativus] gi|449477782|ref|XP_004155121.1| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
TAIR|locus:2183602411 AT5G36230 "AT5G36230" [Arabido 0.846 0.722 0.727 1.4e-110
TAIR|locus:2200400411 AT1G65220 "AT1G65220" [Arabido 0.846 0.722 0.685 1.3e-102
UNIPROTKB|F1NCN8421 BZW2 "Basic leucine zipper and 0.652 0.543 0.305 3.3e-53
UNIPROTKB|F1NM03419 BZW2 "Basic leucine zipper and 0.652 0.546 0.305 3.3e-53
UNIPROTKB|Q5ZL42414 BZW2 "Basic leucine zipper and 0.652 0.553 0.305 3.3e-53
ZFIN|ZDB-GENE-030131-3951419 bzw1a "basic leucine zipper an 0.646 0.541 0.314 6.9e-53
UNIPROTKB|A6H7D7419 BZW2 "BZW2 protein" [Bos tauru 0.652 0.546 0.309 6.9e-53
UNIPROTKB|F1PUT4419 BZW2 "Uncharacterized protein" 0.652 0.546 0.305 2.3e-52
UNIPROTKB|Q9Y6E2419 BZW2 "Basic leucine zipper and 0.652 0.546 0.305 2.3e-52
UNIPROTKB|Q2L4X1419 Bzw2 "Basic leucine zipper and 0.652 0.546 0.305 2.3e-52
TAIR|locus:2183602 AT5G36230 "AT5G36230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 224/308 (72%), Positives = 257/308 (83%)

Query:     1 MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFS 60
             MSSKEKPTLGGTRIK RKRNIAAPLDPAAFSDAVVQIY DNAGDLEL+AK IESSDLNF+
Sbjct:     1 MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYHDNAGDLELVAKSIESSDLNFT 60

Query:    61 RYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFL 120
             RYGD FFEV+F GGRTQPGT K DEGERH+YS+IDCEP+REAILPSV+YIQKILRR+PFL
Sbjct:    61 RYGDIFFEVIFIGGRTQPGTVKSDEGERHTYSVIDCEPKREAILPSVVYIQKILRRKPFL 120

Query:   121 IKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGL 180
             IKNLENVTRRF+QSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV KG+
Sbjct:   121 IKNLENVTRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGI 180

Query:   181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILM 240
             VLSF+TDFFKEYLV+NSL+DLI+IL+RGKMEDNL+DF P  +RSAE F+EHFT   + L 
Sbjct:   181 VLSFVTDFFKEYLVENSLEDLISILRRGKMEDNLMDFLPPVRRSAESFAEHFTN--EGLT 238

Query:   241 DAVQWSGKXXXXXXXXXLRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFP 300
             D V++  K         LR++KT   +L +  T      E++  V+ Q  +DAKL  +  
Sbjct:   239 DLVEYHSKKMFEVK---LREIKT---VLTSKVTEESNVDEVIESVKQQI-KDAKLPDI-- 289

Query:   301 EIVRSLYD 308
             E+VR ++D
Sbjct:   290 EVVRVVWD 297
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006446 "regulation of translational initiation" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
TAIR|locus:2200400 AT1G65220 "AT1G65220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCN8 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NM03 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL42 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3951 bzw1a "basic leucine zipper and W2 domains 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A6H7D7 BZW2 "BZW2 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUT4 BZW2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6E2 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2L4X1 Bzw2 "Basic leucine zipper and W2 domain-containing protein 2" [Mus musculus molossinus (taxid:57486)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
cd11560194 cd11560, W2_eIF5C_like, C-terminal W2 domain of th 2e-62
smart0051583 smart00515, eIF5C, Domain at the C-termini of GCD6 5e-26
pfam0202075 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon 1e-17
cd11561157 cd11561, W2_eIF5, C-terminal W2 domain of eukaryot 5e-15
cd11558169 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of 6e-15
cd11473135 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/ 5e-08
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins Back     alignment and domain information 
 Score =  197 bits (503), Expect = 2e-62
 Identities = 75/185 (40%), Positives = 108/185 (58%), Gaps = 22/185 (11%)

Query: 187 DFFKEYLVDNSLDDLI-------AILKRGKMEDNLLDFFPSSKRSAE------------G 227
           + F E+  +  LD+L+       +   + +++  L +     +   E             
Sbjct: 11  EHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIAAVKEQMKKSS 70

Query: 228 FSEH--FTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKV 285
             EH    +LW  LMDAV+WS K + Q A  ALR +K +A LL  FCT A+ EL L+ K+
Sbjct: 71  LPEHEVVGLLWTALMDAVEWSKK-EDQIAEQALRHLKKYAPLLAAFCTTARAELALLNKI 129

Query: 286 QMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLE 345
           Q  CYE+ K MK+F +IV+ LY  DVL+ED IL W++KG +PKG+Q F+K +EPFV+WL+
Sbjct: 130 QEYCYENMKFMKVFQKIVKLLYKADVLSEDAILKWYKKGHSPKGKQVFLKQMEPFVEWLQ 189

Query: 346 EAEEE 350
           EAEEE
Sbjct: 190 EAEEE 194

eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 194
>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon Back     alignment and domain information
>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5 Back     alignment and domain information
>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon Back     alignment and domain information
>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 351
KOG2297412 consensus Predicted translation factor, contains W 100.0
KOG1461673 consensus Translation initiation factor 2B, epsilo 99.88
smart0051583 eIF5C Domain at the C-termini of GCD6, eIF-2B epsi 99.87
PF0202084 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003 99.85
KOG2767400 consensus Translation initiation factor 5 (eIF-5) 99.65
PF09090253 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This 96.41
KOG1104 759 consensus Nuclear cap-binding complex, subunit NCB 88.4
KOG2140739 consensus Uncharacterized conserved protein [Gener 83.45
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-114  Score=818.46  Aligned_cols=347  Identities=52%  Similarity=0.888  Sum_probs=340.5

Q ss_pred             CCCCCCCCCCCcccccccccccCCCCchhhHHHHHHHhhcCCCCHHHHHHHh--hcCCccchhhhhhhHHhhhhcCCCCC
Q 018755            1 MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCI--ESSDLNFSRYGDTFFEVVFTGGRTQP   78 (351)
Q Consensus         1 ~~~~~kp~l~g~riktrkr~~~~~~dp~~frd~~~~~~~~~~~dle~~~k~l--~g~~ldy~ry~~~lf~i~~~Gg~l~p   78 (351)
                      |++.+||+|+|+||||||||+++++||++|||++|+||++++||||+|||+|  .|++||||||||+||||+++||+++|
T Consensus         2 ~~k~~kp~lsg~riktrKr~~~e~~dp~~f~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~p   81 (412)
T KOG2297|consen    2 SQKTEKPVLSGQRIKTRKRDEAEKLDPTAFRDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQP   81 (412)
T ss_pred             CccccCCCCCCccchhhhccccccCCCccHHHHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCC
Confidence            6889999999999999999999999999999999999999999999999999  58899999999999999999999999


Q ss_pred             CCCCCCCCC-CCCceeecCCccchhhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhh
Q 018755           79 GTTKPDEGE-RHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQK  157 (351)
Q Consensus        79 gg~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~  157 (351)
                      ||+..|||+ +++||||+|++++|+|++|+|||||||||||||+|+|||+|+|+|+||++|++++|.|||++||++++  
T Consensus        82 g~~~sddge~~t~~cvfda~e~~E~i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~--  159 (412)
T KOG2297|consen   82 GGVKSDDGERHTSYCVFDAEEKREAIRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLS--  159 (412)
T ss_pred             CCccccccCccCceeEeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh--
Confidence            999999997 55799999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hcCCCCcccchhhhhhccccCcchHHHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHH----
Q 018755          158 LSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFT----  233 (351)
Q Consensus       158 ~~g~~~~~~l~~l~~d~lv~dg~al~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~----  233 (351)
                       ||++|++||++|.+||||++|++++|++.+|++|+.+++++++++.||+.+|++|||+|||||+|+.++|.++|.    
T Consensus       160 -nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL  238 (412)
T KOG2297|consen  160 -NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGL  238 (412)
T ss_pred             -CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhH
Confidence             999999999999999999999999999999999999999999999999999999999999999999999999997    


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHhhcccchhhHHHH
Q 018755          234 --------------------------------------------------------ILWDILMDAVQWSGKNQQQNANAA  257 (351)
Q Consensus       234 --------------------------------------------------------~i~~alm~~v~~~~~~~~~~~e~~  257 (351)
                                                                              +||+++|+.|+||++ ++++++++
T Consensus       239 ~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKk-eelva~qa  317 (412)
T KOG2297|consen  239 KELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKK-EELVAEQA  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchH-HHHHHHHH
Confidence                                                                    999999999999966 88899999


Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCchhhHHHHHhH
Q 018755          258 LRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKAL  337 (351)
Q Consensus       258 ~k~l~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~gk~~~rk~~  337 (351)
                      +++++.|+|||..||+++.+++.+|+.+|.|||+|.++|+.|+.|+..||..||++||.|++||.+++.++|+++|++++
T Consensus       318 lrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqm  397 (412)
T KOG2297|consen  318 LRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQM  397 (412)
T ss_pred             HHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccCC
Q 018755          338 EPFVKWLEEAEEEE  351 (351)
Q Consensus       338 ~pFVeWLeEAEEEs  351 (351)
                      +|||+||++|||||
T Consensus       398 kkFVeWL~~AEEEs  411 (412)
T KOG2297|consen  398 KKFVEWLQNAEEES  411 (412)
T ss_pred             HHHHHHHHhhhhcc
Confidence            99999999999995

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included [] Back     alignment and domain information
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
2iu1_A208 Crystal Structure Of Eif5 C-Terminal Domain Length 2e-06
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain Length = 208 Back     alignment and structure 
Iteration: 1

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 260 QVKTWAQLLNTFC-TNAKLELELMYKVQ-MQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 317
           Q+K + +    FC  N K +  L++ ++ +     A+L+   P I++ +YD D+L E+ I
Sbjct: 61  QIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVI 120
Query: 318 LYWFRKGTNPKGRQTFVKAL----EPFVKWLEEA 347
           + W  K +     +   K +    EPF+KWL+EA
Sbjct: 121 ISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEA 154

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 5e-27
1paq_A189 Translation initiation factor EIF-2B epsilon subun 4e-26
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 8e-22
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 4e-21
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 1e-20
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 3e-20
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 5e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182 Back     alignment and structure
 Score =  104 bits (260), Expect = 5e-27
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 20/176 (11%)

Query: 181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILM 240
           VL  +    +E   + S D+L+  +   K   N+               E   +L  +++
Sbjct: 18  VLGTLQRGKEE---NISCDNLVLEINSLKYAYNISL------------KEVMQVLSHVVL 62

Query: 241 DAVQW---SGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMK 297
           +       S  +  +     L  +K W+ +   +   A   LE +  ++    E   L  
Sbjct: 63  EFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGI 122

Query: 298 LFPEIVRSLYDQDVLAEDTILYWFR-KGTNPKGRQTFV-KALEPFVKWLEEAEEEE 351
              +++ + Y  ++LA +TIL WF  + T  KG+Q    + L+ F++WL+EAEEE 
Sbjct: 123 SMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEES 178
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189 Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168 Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 100.0
1paq_A189 Translation initiation factor EIF-2B epsilon subun 100.0
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.97
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 99.94
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.93
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 99.91
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 99.86
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 97.31
2zu6_B307 Programmed cell death protein 4; protein-protein c 82.08
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0 Back     alignment and structure
Probab=100.00  E-value=4.1e-33  Score=250.98  Aligned_cols=155  Identities=21%  Similarity=0.371  Sum_probs=135.7

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHh--hcc-cchhhHHHHHHHH
Q 018755          185 ITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQW--SGK-NQQQNANAALRQV  261 (351)
Q Consensus       185 ~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~--~~~-~~~~~~e~~~k~l  261 (351)
                      +.++.+++.+++++|++++|+|++||+            +|.++++|+++||.|+|+++.+  .+. ......+++.+.|
T Consensus        19 ~~sl~ra~~e~~~~d~~~LEinslr~a------------~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i   86 (182)
T 3jui_A           19 LGTLQRGKEENISCDNLVLEINSLKYA------------YNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLL   86 (182)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHH------------TTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHH------------hCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHH
Confidence            348899999999999999999999999            9999999999999999999753  321 1233455788999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCch-hhH-HHHHhHHH
Q 018755          262 KTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK-GRQ-TFVKALEP  339 (351)
Q Consensus       262 ~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~-gk~-~~rk~~~p  339 (351)
                      ++|+|+|.+|+++.+.|+++|+++|.+|++++.+++.|+.||+.|||.|||+||+|++||+++++.. |++ .+|++++|
T Consensus        87 ~~~~~ll~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~  166 (182)
T 3jui_A           87 KAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQR  166 (182)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987653 543 68899999


Q ss_pred             HHHHhhhcccCC
Q 018755          340 FVKWLEEAEEEE  351 (351)
Q Consensus       340 FVeWLeEAEEEs  351 (351)
                      ||+||+||||||
T Consensus       167 Fi~WL~eAEEEs  178 (182)
T 3jui_A          167 FIQWLKEAEEES  178 (182)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHhccCccc
Confidence            999999999885
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 351
d1paqa_161 a.118.1.14 (A:) Translation initiation factor eIF- 1e-24
d1ug3a2127 a.118.1.14 (A:1438-1564) Eukaryotic initiation fac 2e-17
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.1 bits (239), Expect = 1e-24
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 187 DFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEH--FTILWDILMDAVQ 244
           DF KE     +++   A+     ++  LL+   ++ R +   + H         L+  V 
Sbjct: 1   DFEKE--GIATVER--AMENNHDLDTALLEL--NTLRMSMNVTYHEVRIATITALLRRVY 54

Query: 245 WSGKNQQQNANAALRQV-KTWAQLLNTFCTNAKLELELMYKVQMQCYED--AKLMKLFPE 301
                Q      A+ +V   W  L      + +  ++LM  +  +  E    K   +   
Sbjct: 55  HFIATQTLGPKDAVVKVFNQWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFS 114

Query: 302 IVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAE 348
            + SLYD D++ ED I  W+   +         K    +V+WL+ A+
Sbjct: 115 ALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQNAD 161
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
d1paqa_161 Translation initiation factor eIF-2b epsilon {Bake 99.97
d1ug3a2127 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.73
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 97.57
d1h2vc3 310 CBP80, 80KDa nuclear cap-binding protein {Human (H 95.97
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-31  Score=235.02  Aligned_cols=153  Identities=20%  Similarity=0.252  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccch-hhHHHHHHHHH
Q 018755          184 FITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQ-QNANAALRQVK  262 (351)
Q Consensus       184 f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~-~~~e~~~k~l~  262 (351)
                      .+.++.|++.+++++|++++|||++||+            +|.++++|+.+||.|+|+.+.+..+++. ...+.+.+.|+
T Consensus         6 v~~sl~r~~ee~~~~dn~iLElnslr~a------------~N~~~~dv~~av~~All~~i~~~~~~~~~~~~~~~~~~l~   73 (161)
T d1paqa_           6 GIATVERAMENNHDLDTALLELNTLRMS------------MNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFN   73 (161)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHH------------TTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            4558899999999999999999999999            9999999999999999999875444332 23446778899


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCchhhHHHHHhHHHH
Q 018755          263 TWAQLLNTFCTNAKLELELMYKVQMQCYE--DAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPF  340 (351)
Q Consensus       263 k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~--~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~gk~~~rk~~~pF  340 (351)
                      +|+|+|++|+++...|+++|.++|.+|++  ++.++++|+.|++.|||.|||+||+|++||++++++.++++++++++||
T Consensus        74 k~~~ll~~~~~~~~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~~dii~Ed~i~~W~~~~~~~~~~~~~~~~~~~f  153 (161)
T d1paqa_          74 QWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKW  153 (161)
T ss_dssp             HHGGGGGGTCCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHhhchhcHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999985  4678889999999999999999999999999988877889999999999


Q ss_pred             HHHhhhcc
Q 018755          341 VKWLEEAE  348 (351)
Q Consensus       341 VeWLeEAE  348 (351)
                      |+||++||
T Consensus       154 v~WL~~ae  161 (161)
T d1paqa_         154 VEWLQNAD  161 (161)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhCC
Confidence            99999997
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure