Citrus Sinensis ID: 018756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEEccccccEEEEcccccEEccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccccccccEEEccccEEEEEEEcccccEEEcEcccccccccHHHEHccccccHHHHHHHc
Coil and Loop (DISEMBL)
MESLRRQASKLKEQVAKQQQAVIKQFSasgyersdvmviDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYgaennqninenILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQqrvreapnpenvAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEkqrkesappvipsenssqKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRkvspsgwsegeckgkagwfpsanvekrqripvsnvadeay
Flexible Loop (DISEMBL)
meslrrqaSKLKEQVAKQQQAVIKqfsasgyersDVMVIDEVEMQRHQQLEklyrstrgtkdfQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENnqnineniLPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAvevskrqqrvreapnpenvAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKqrkesappvipsensSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSpsgwsegeckgkagwfpsanvekrqripvsnvadeay
Low Complexity Region (SEG)
MESLRRQASKLKEqvakqqqavikqFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMailgkeaaaalaaieaQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Disordered region (IsUnstruct)
**********************************DVMVIDEV*******LEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDAR************LL***VLDPLRAMI***********************************************************ANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE*************************AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWF*********************
Disordered Region (DISOPRED)
**************************************************************FQRDLVKVAEVFTAI*YK**EAGTKLSED**********************************************LD*************************************************************************************************************************************************LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE***************
Disordered Region (DISEMBL)
********************AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY*************************NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA********************SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Disordered Region (DISPRO)
*ES*RRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEK*****************KAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVAD*AY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQRVREAPNPENVAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q9Z0R4	1714	Intersectin-1 OS=Mus musc	yes	no	0.216	0.044	0.385	2e-06
Q2KJB5	505	Nostrin OS=Bos taurus GN=	yes	no	0.213	0.148	0.397	2e-06
Q9WVE9	1217	Intersectin-1 OS=Rattus n	no	no	0.216	0.062	0.352	5e-06
Q15811	1721	Intersectin-1 OS=Homo sap	yes	no	0.188	0.038	0.36	9e-06
Q5ZLR6	764	Rho guanine nucleotide ex	no	no	0.168	0.077	0.419	1e-05
O42287	1270	Intersectin-1 OS=Xenopus	N/A	no	0.159	0.044	0.4	2e-05
Q9R0C8	847	Guanine nucleotide exchan	no	no	0.148	0.061	0.471	2e-05
Q9UKW4	847	Guanine nucleotide exchan	no	no	0.148	0.061	0.471	2e-05
Q5XXR3	772	Rho guanine nucleotide ex	no	no	0.196	0.089	0.337	3e-05
Q8K4I3	771	Rho guanine nucleotide ex	no	no	0.196	0.089	0.342	3e-05

>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 270 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKA 327
           P+  S   S K VY+   A++PF + S  E+++  GD V+V   +    GW  GE KGK 
Sbjct: 729 PLTISAQESVKVVYY--RALYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKT 786

Query: 328 GWFPSANVEKRQRIPVSNVADEA 350
           GWFP+   EK   IP + V   A
Sbjct: 787 GWFPANYAEK---IPENEVPTPA 806

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.
Mus musculus (taxid: 10090)

>sp|Q2KJB5|NOSTN_BOVIN Nostrin OS=Bos taurus GN=NOSTRIN PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 272 IPSENSSQKAVY----FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA 327
           IPS +S+   V      L +A++PF A  + EL L  GD V + K    GW  G  KGK 
Sbjct: 424 IPSPSSTASGVTQLGNGLCKALYPFQARQDDELDLEKGDIVTIHKKKDEGWWFGSLKGKK 483

Query: 328 GWFPSANVEKRQRIPVSNVADEA 350
           G FP+A VE+   +P+ N  D A
Sbjct: 484 GHFPAAYVEE---LPL-NAGDTA 502

Multivalent adapter protein which may decrease NOS3 activity by inducing its translocation away from the plasma membrane.

Bos taurus (taxid: 9913)

>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 270 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVR-------KVSPSGWSEGE 322
           P+  S   S K VY+   A++PF + S  E+++  GD V+V+       +    GW  GE
Sbjct: 728 PLTISAQESAKVVYY--RALYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGE 785

Query: 323 CKGKAGWFPSANVEKRQRIPVSNVADEA 350
            KGK GWFP+   EK   IP + +   A
Sbjct: 786 PKGKTGWFPANYAEK---IPENEIPTPA 810

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Rattus norvegicus (taxid: 10116)

>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 270 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVR-------KVSPSGWSEGE 322
           P+  S   + K VY+   A++PF + S  E+++  GD V+V+       +    GW  GE
Sbjct: 731 PLTISAQENVKVVYY--RALYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGE 788

Query: 323 CKGKAGWFPSANVEK 337
            KGK GWFP+   EK
Sbjct: 789 LKGKTGWFPANYAEK 803

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Isoform 1 could be involved in brain-specific synaptic vesicle recycling. Inhibits ARHGAP31 activity toward RAC1.

Homo sapiens (taxid: 9606)

>sp|Q5ZLR6|ARHG6_CHICK Rho guanine nucleotide exchange factor 6 OS=Gallus gallus GN=ARHGEF6 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           +EN S + V    +A   F   +E ELS+  GD + V +V   GW EG   GK GWFPS 
Sbjct: 148 TENGSHQLV---VKARFNFKQTNEDELSVNKGDIIYVTRVEEGGWWEGTLNGKTGWFPSN 204

Query: 334 NV 335
            V
Sbjct: 205 YV 206

Acts as a RAC1 guanine nucleotide exchange factor (GEF).

Gallus gallus (taxid: 9031)

>sp|O42287|ITSN1_XENLA Intersectin-1 OS=Xenopus laevis GN=itsn1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 280 KAVYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
           K VY+   A++PF A S  E+++  GD ++V   +    GW  GE KGK GWFP+   E+
Sbjct: 733 KVVYY--RALYPFDARSHDEITIEPGDIIMVDESQTGEPGWLGGELKGKTGWFPANYAER 790

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Xenopus laevis (taxid: 8355)

>sp|Q9R0C8|VAV3_MOUSE Guanine nucleotide exchange factor VAV3 OS=Mus musculus GN=Vav3 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 336
           +A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE
Sbjct: 792 IAIARYDFCARDMRELSLLKGDMVKIYTKMSANGWWRGEVNGRVGWFPSTYVE 844

Exchange factor for GTP-binding proteins RhoA, RhoG and, to a lesser extent, Rac1. Binds physically to the nucleotide-free states of those GTPases (By similarity). Plays an important role in angiogenesis. Its recruitement by phosphorylated EPHA2 is critical for EFNA1-induced RAC1 GTPase activation and vascular endothelial cell migration and assembly. May be important for integrin-mediated signaling, at least in some cell types. In osteoclasts, along with SYK tyrosine kinase, required for signaling through integrin alpha-v/beta-1 (ITAGV-ITGB1), a crucial event for osteoclast proper cytoskeleton organization and function. This signaling pathway involves RAC1, but not RHO, activation. Necessary for proper wound healing. In the course of wound healing, required for the phagocytotic cup formation preceding macrophage phagocytosis of apoptotic neutrophils. Responsible for integrin beta-2-mediated macrophage adhesion and, to a lesser extent, contributes to beta-3-mediated adhesion. Does not affect integrin beta-1-mediated adhesion.

Mus musculus (taxid: 10090)

>sp|Q9UKW4|VAV3_HUMAN Guanine nucleotide exchange factor VAV3 OS=Homo sapiens GN=VAV3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 336
           +A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE
Sbjct: 792 IAIARYDFCARDMRELSLLKGDVVKIYTKMSANGWWRGEVNGRVGWFPSTYVE 844

Exchange factor for GTP-binding proteins RhoA, RhoG and, to a lesser extent, Rac1. Binds physically to the nucleotide-free states of those GTPases. Plays an important role in angiogenesis. Its recruitement by phosphorylated EPHA2 is critical for EFNA1-induced RAC1 GTPase activation and vascular endothelial cell migration and assembly (By similarity). May be important for integrin-mediated signaling, at least in some cell types. In osteoclasts, along with SYK tyrosine kinase, required for signaling through integrin alpha-v/beta-1 (ITAGV-ITGB1), a crucial event for osteoclast proper cytoskeleton organization and function. This signaling pathway involves RAC1, but not RHO, activation. Necessary for proper wound healing. In the course of wound healing, required for the phagocytotic cup formation preceding macrophage phagocytosis of apoptotic neutrophils. Responsible for integrin beta-2 (ITGB2)-mediated macrophage adhesion and, to a lesser extent, contributes to beta-3 (ITGB3)-mediated adhesion. Does not affect integrin beta-1 (ITGB1)-mediated adhesion.

Homo sapiens (taxid: 9606)

>sp|Q5XXR3|ARHG6_RAT Rho guanine nucleotide exchange factor 6 OS=Rattus norvegicus GN=Arhgef6 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 267 SAPPVIPSENSSQKAV--------YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGW 318
           + P   P + S +KA           + +A   F   +E ELS+  GD + V +V   GW
Sbjct: 138 AVPSTTPEQQSEEKAAEMTENGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGW 197

Query: 319 SEGECKGKAGWFPSANV 335
            EG   G+ GWFPS  V
Sbjct: 198 WEGTLNGRTGWFPSNYV 214

Acts as a RAC1 guanine nucleotide exchange factor (GEF).

Rattus norvegicus (taxid: 10116)

>sp|Q8K4I3|ARHG6_MOUSE Rho guanine nucleotide exchange factor 6 OS=Mus musculus GN=Arhgef6 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 267 SAPPVIPSENSSQKAVY-------FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS 319
           + P   P ++S +KA          + +A   F   +E ELS+  GD + V +V   GW 
Sbjct: 138 AVPSTAPEQHSEEKAEMTENGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWW 197

Query: 320 EGECKGKAGWFPSANV 335
           EG   G+ GWFPS  V
Sbjct: 198 EGTLNGRTGWFPSNYV 213

Acts as a RAC1 guanine nucleotide exchange factor (GEF).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
186511991	351	SH3 domain-containing protein [Arabidops	1.0	1.0	0.797	1e-168
297800258	351	AT4g18060/F15J5_30 [Arabidopsis lyrata s	1.0	1.0	0.797	1e-167
16974680	351	SH3 domain-containing protein 3 [Arabido	1.0	1.0	0.786	1e-165
255557451	347	vav3, putative [Ricinus communis] gi|223	0.988	1.0	0.820	1e-160
224116716	349	predicted protein [Populus trichocarpa]	0.980	0.985	0.823	1e-159
449500573	348	PREDICTED: uncharacterized LOC101214418	0.991	1.0	0.792	1e-159
224114387	352	predicted protein [Populus trichocarpa]	0.988	0.985	0.797	1e-158
148270940	348	Src homology-3 domain protein 3 [Cucumis	0.991	1.0	0.783	1e-156
225463364	348	PREDICTED: uncharacterized protein LOC10	0.991	1.0	0.786	1e-156
356525323	348	PREDICTED: uncharacterized protein LOC10	0.991	1.0	0.789	1e-155

>gi|186511991|ref|NP_193540.3| SH3 domain-containing protein [Arabidopsis thaliana] gi|21928139|gb|AAM78097.1| AT4g18060/F15J5_30 [Arabidopsis thaliana] gi|25090269|gb|AAN72266.1| At4g18060/F15J5_30 [Arabidopsis thaliana] gi|332658589|gb|AEE83989.1| SH3 domain-containing protein [Arabidopsis thaliana]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 280/351 (79%), Positives = 313/351 (89%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++ RRQASKL++QVAKQQ AVIKQFS +GYE SDVMVIDE+EMQRH QL+KLYRSTR  
Sbjct: 1   MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           K+FQRD+VK AE FT IG +HIEAGTKLSEDCCRYG EN+QNI+ENIL KAAAIYGDARK
Sbjct: 61  KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HV+KEQEDFN+LL+SQVLDPLRAM+ G+PLEDARHLAQRYSRMRQEAET A EVS+RQ R
Sbjct: 121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VREAP PENVAKL  AEA+MQELKANMA+LGKEA AALAA+E+QQHRLTFQRLVAMVEGE
Sbjct: 181 VREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEGE 240

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           KNYHLRIAAIL D+EAEMV+EKQ KESAPP IP+EN S+K  YFLAE IHPF+AASEKEL
Sbjct: 241 KNYHLRIAAILSDIEAEMVTEKQHKESAPPAIPTENGSEKTSYFLAEVIHPFSAASEKEL 300

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
            L  GDY+VVRKVS +GW+EGECKGKAGWFP A +EKRQR+P +N A E Y
Sbjct: 301 DLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQRLPTTNFAAEVY 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800258|ref|XP_002868013.1| AT4g18060/F15J5_30 [Arabidopsis lyrata subsp. lyrata] gi|297313849|gb|EFH44272.1| AT4g18060/F15J5_30 [Arabidopsis lyrata subsp. lyrata]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/351 (79%), Positives = 313/351 (89%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++ RRQASKL++QVAKQQ AVIKQFS +GYE SDVMVIDE+EMQRH QL+KLYRSTR  
Sbjct: 1   MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           K+FQRD+VK AE FT+IG +HIEAGTKLSEDCCRYG EN+QNI+ENIL KAAAIYGDARK
Sbjct: 61  KEFQRDIVKAAEAFTSIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HV+KEQEDFN+LL+SQVLDPLRAM+ G+PLEDARHLAQRYSRMRQEAET A EVS+RQ R
Sbjct: 121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VREAP PENVAKL  AEA+MQELKANMA+LGKEA AALAA+E+QQHRLTFQRLVAMVEGE
Sbjct: 181 VREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEGE 240

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           KNYHLRIAAIL D+EAEMV+EKQ KESAPP IP+EN S+K  YFLAE IH F+AASEKEL
Sbjct: 241 KNYHLRIAAILSDIEAEMVTEKQHKESAPPAIPTENGSEKTSYFLAEVIHAFSAASEKEL 300

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
            L  GDYVVVRKVS +GW+EGECKGKAGWFP A +EKRQR+P +N A E Y
Sbjct: 301 ELEKGDYVVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQRLPTNNFAAEVY 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16974680|gb|AAL32440.1|AF367775_1 SH3 domain-containing protein 3 [Arabidopsis thaliana]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/351 (78%), Positives = 309/351 (88%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++ RRQASKL++QVAKQQ AVIKQFS +GYE SDVMVIDE+EMQRH QL+KLYRSTR  
Sbjct: 1   MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           K+FQRD+VK AE FT IG +HIEAGTKLSEDCCRYG E  +NI+ENIL KAAAIYGDARK
Sbjct: 61  KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNEIVRNIDENILAKAAAIYGDARK 120

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HV+KEQEDFN+LL+SQVLDPLRAM+ G+PLEDARHLAQRYSRMRQEAET A EVS+RQ R
Sbjct: 121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VREAP PENVAKL  AEA+MQELKANMA+LGKEA AALAA+E+QQHRLTFQRLVAMVEGE
Sbjct: 181 VREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEGE 240

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           KNYHLRIAAIL D+EAEMV+EKQ KESA P IP+EN S+K  YFLAE IHPF+A SEKEL
Sbjct: 241 KNYHLRIAAILSDIEAEMVTEKQHKESALPAIPTENGSEKTSYFLAEVIHPFSAVSEKEL 300

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
            L  GDY+VVRKVS +GW+EGECKGKAGWFP A +EKRQR+P +N A E Y
Sbjct: 301 DLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQRLPTTNFAAEVY 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557451|ref|XP_002519756.1| vav3, putative [Ricinus communis] gi|223541173|gb|EEF42729.1| vav3, putative [Ricinus communis]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 288/351 (82%), Positives = 311/351 (88%), Gaps = 4/351 (1%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++LR+QA KL+EQVAKQQQAVIKQFS +GYE SDVMVIDEVEMQRHQQLEKLYRSTR  
Sbjct: 1   MDALRKQAFKLREQVAKQQQAVIKQFSGTGYESSDVMVIDEVEMQRHQQLEKLYRSTRAG 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           KDFQ+D+VK AE FTAIGYKHIEAGTKLSEDCCRYG EN    N+NIL K A IYG+ARK
Sbjct: 61  KDFQKDIVKAAETFTAIGYKHIEAGTKLSEDCCRYGTEN---ANDNILSKGAGIYGEARK 117

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HVEKEQED  RLLSSQVLDPLR MI GAPLEDARHLAQRYSRMRQEAETQA EVS+RQ R
Sbjct: 118 HVEKEQEDLIRLLSSQVLDPLRTMINGAPLEDARHLAQRYSRMRQEAETQAAEVSRRQVR 177

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           V+E P PENVAKLHAAEA+MQELKANMA+LGKEAAAALAA+EAQQ RL+FQRLVAMVE E
Sbjct: 178 VKETPIPENVAKLHAAEAKMQELKANMAVLGKEAAAALAAVEAQQQRLSFQRLVAMVEAE 237

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           KNYHLRIAAI  +VEAEMVSEKQRKESAPPVIPSEN S+K +YFLAE  HPF A +EKEL
Sbjct: 238 KNYHLRIAAIFSEVEAEMVSEKQRKESAPPVIPSENGSEK-MYFLAEVTHPFIAETEKEL 296

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
           SL VGDYVVVRKVSP+GWSEGECKG+AGWFPSA VEKRQRIP S+   + Y
Sbjct: 297 SLAVGDYVVVRKVSPNGWSEGECKGRAGWFPSAYVEKRQRIPTSDATTQVY 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116716|ref|XP_002331860.1| predicted protein [Populus trichocarpa] gi|222875378|gb|EEF12509.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/352 (82%), Positives = 318/352 (90%), Gaps = 8/352 (2%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++LR+QASKL+EQVAKQQQAVIKQFS +GYE SDVMVIDEVEM RHQQLEKLYRSTR  
Sbjct: 1   MDALRKQASKLREQVAKQQQAVIKQFSGTGYESSDVMVIDEVEMHRHQQLEKLYRSTRSG 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           KDFQ+D+VK AE FT IGY+HIEAGTKLSEDCCRYG EN   INEN+L KAAAIYGDARK
Sbjct: 61  KDFQKDVVKAAEAFTTIGYRHIEAGTKLSEDCCRYGTEN---INENMLAKAAAIYGDARK 117

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HVE+EQ+D NRLLSSQVL+PLRAMI G PLEDARHLAQRYSRMRQEAETQAVEVS+RQ R
Sbjct: 118 HVEQEQDDLNRLLSSQVLEPLRAMINGGPLEDARHLAQRYSRMRQEAETQAVEVSRRQAR 177

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VRE+P PENV+KLHAAEA+MQE+KANMA+LGKEAAAALAA+EAQQHRLTFQRLVAMVEGE
Sbjct: 178 VRESPIPENVSKLHAAEAKMQEIKANMAVLGKEAAAALAAVEAQQHRLTFQRLVAMVEGE 237

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESA-----PPVIPSENSSQKAVYFLAEAIHPFTAA 295
           KNYHLRIAAIL +VEAEMVSEKQ+KESA     PPVIPSEN  +K+ YFLAEA HPF A 
Sbjct: 238 KNYHLRIAAILSEVEAEMVSEKQQKESAPPVILPPVIPSENGMEKSTYFLAEATHPFFAE 297

Query: 296 SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVA 347
           +EKELSL VGDY+VVRKVSP+GWSEGEC+GKAGWFPSA VEKRQRIP S+ A
Sbjct: 298 TEKELSLAVGDYIVVRKVSPTGWSEGECRGKAGWFPSAYVEKRQRIPTSSSA 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500573|ref|XP_004161135.1| PREDICTED: uncharacterized LOC101214418 [Cucumis sativus]

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/351 (79%), Positives = 307/351 (87%), Gaps = 3/351 (0%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++LR+QASKLK QVAKQQQAVIKQF  SGYE SDVMVIDEVEMQRHQQLEK YRSTR  
Sbjct: 1   MDALRKQASKLKVQVAKQQQAVIKQFGGSGYESSDVMVIDEVEMQRHQQLEKFYRSTRAG 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           +DFQ+D+VK  E F AIGY+HIE G KLSEDCC YGA    NINENIL KA++IYGDARK
Sbjct: 61  RDFQKDIVKAGEAFIAIGYRHIETGNKLSEDCCNYGA---NNINENILAKASSIYGDARK 117

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HVEKEQED  +L SSQ+LDPLRAMITG PLEDARHLAQRYSRMRQEAET A E+S+R+ R
Sbjct: 118 HVEKEQEDLIKLFSSQILDPLRAMITGPPLEDARHLAQRYSRMRQEAETLAGEISRRRAR 177

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VRE  NPENVAKLHA+EA+MQELKANMA+LGKEA+AALAA++AQQ RLT QRLVAMVEGE
Sbjct: 178 VREFSNPENVAKLHASEAKMQELKANMAVLGKEASAALAAVDAQQQRLTLQRLVAMVEGE 237

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           K YHLR+AAILG+VEAEMV+EKQRKESAPPVI SEN S K+ +FLAEA+HPF AASEKEL
Sbjct: 238 KTYHLRVAAILGEVEAEMVTEKQRKESAPPVISSENHSGKSSFFLAEAVHPFNAASEKEL 297

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
           SL VGDYVVVRKVSPSGWSEGECKGK GWFPS+ VEKRQRIP  N   E++
Sbjct: 298 SLSVGDYVVVRKVSPSGWSEGECKGKGGWFPSSYVEKRQRIPTMNTVSESF 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114387|ref|XP_002316744.1| predicted protein [Populus trichocarpa] gi|222859809|gb|EEE97356.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/356 (79%), Positives = 316/356 (88%), Gaps = 9/356 (2%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++LR+QASKL+EQVAKQQQAVIKQFS++GYE SDVMVIDEVEM RHQQLEK+Y  TR  
Sbjct: 1   MDALRKQASKLREQVAKQQQAVIKQFSSTGYESSDVMVIDEVEMHRHQQLEKMYSLTRAG 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           KDFQ+D++K AE FTAIGYKH+EAGTKLSEDCCRYG EN   INENIL KAAAIYGDA K
Sbjct: 61  KDFQKDILKAAESFTAIGYKHVEAGTKLSEDCCRYGTEN---INENILAKAAAIYGDAHK 117

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HVE+EQED NRLL SQ+LDPLRAMIT +PLEDARHLAQRYSRMRQEAETQA E+S+RQ R
Sbjct: 118 HVEQEQEDLNRLLFSQILDPLRAMITDSPLEDARHLAQRYSRMRQEAETQAAELSRRQAR 177

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VRE+P PEN+A+LHAAEA+MQE+KANMA+LGKEAAAALAA+EAQQHRLTFQRLVAMVEGE
Sbjct: 178 VRESPIPENIARLHAAEAKMQEIKANMAVLGKEAAAALAAVEAQQHRLTFQRLVAMVEGE 237

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAP-----PVIPSENSSQKAVYFLAEAIHPFTAA 295
           KNYHLRIAAIL +VEAEMVSEKQ+KESAP     PVIPSEN S+K  YFLAEA H F A 
Sbjct: 238 KNYHLRIAAILSEVEAEMVSEKQQKESAPPVILLPVIPSENGSEKTTYFLAEATHLFIAE 297

Query: 296 SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
           +EKELSL VGD +VVRKVSP+GWSEGECKGKAGWFPSA VEKRQR+  S +A +AY
Sbjct: 298 TEKELSLAVGDCIVVRKVSPTGWSEGECKGKAGWFPSAYVEKRQRMSTS-LAAQAY 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148270940|gb|ABQ53638.1| Src homology-3 domain protein 3 [Cucumis melo]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/351 (78%), Positives = 307/351 (87%), Gaps = 3/351 (0%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++LR+QASKLK QVAKQQQAVIKQF  SGYE SDVMVIDEVEMQRHQQLEK Y+STR  
Sbjct: 1   MDALRKQASKLKVQVAKQQQAVIKQFGGSGYESSDVMVIDEVEMQRHQQLEKFYKSTRAG 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           +DFQ+D+VK  E F AIGY+HIE G KLSEDCC YGA    NINENIL KA++IYGDA K
Sbjct: 61  RDFQKDIVKAGEAFIAIGYRHIETGNKLSEDCCNYGA---NNINENILAKASSIYGDACK 117

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HVEKEQED  +LLSSQ+LDPLRAMITG PLEDARHLAQRYSRMRQEAE+ A E+S+R+ R
Sbjct: 118 HVEKEQEDLIKLLSSQILDPLRAMITGPPLEDARHLAQRYSRMRQEAESLAAEISRRRAR 177

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VRE  NPENVAKLHA+EA+MQELKANMA+LGKEA+AALAA++AQQ RLT QRLVAMVEGE
Sbjct: 178 VREFSNPENVAKLHASEAKMQELKANMAVLGKEASAALAAVDAQQQRLTLQRLVAMVEGE 237

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           K YHLR+AAILG+VEAEMV+EKQRKESAPPVI SEN   K+ +FLAEA+HPF AASEKEL
Sbjct: 238 KTYHLRVAAILGEVEAEMVTEKQRKESAPPVISSENHPGKSSFFLAEAVHPFNAASEKEL 297

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
           SL VGDYVVVRKVSP+GWSEGECKGKAGWFPS+ VEKRQRIP  N   E++
Sbjct: 298 SLSVGDYVVVRKVSPTGWSEGECKGKAGWFPSSYVEKRQRIPTMNTVPESF 348

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463364|ref|XP_002272365.1| PREDICTED: uncharacterized protein LOC100258967 [Vitis vinifera] gi|297740624|emb|CBI30806.3| unnamed protein product [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/351 (78%), Positives = 310/351 (88%), Gaps = 3/351 (0%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++LR+QASK +EQVAKQQQAVIKQF  +GYE SDVMVIDEVEMQRHQQLEKLYRSTR  
Sbjct: 1   MDALRKQASKFREQVAKQQQAVIKQFGGTGYESSDVMVIDEVEMQRHQQLEKLYRSTRAG 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           KDFQ+D+V+  E FTAIGYK IE GTKLSEDCCRYGAEN   IN+NIL +AA+IYGD  K
Sbjct: 61  KDFQKDIVRAGEAFTAIGYKQIETGTKLSEDCCRYGAEN---INDNILARAASIYGDGLK 117

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           H+ KEQED N+LLSSQ+LDPLRAM+TGAPLEDARHLAQRYSRMR EAETQA EVS+RQ R
Sbjct: 118 HIAKEQEDLNKLLSSQILDPLRAMVTGAPLEDARHLAQRYSRMRHEAETQAAEVSRRQAR 177

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           +REAPNPEN A+L+ AEA+M+ELKANMA+LGKEAAAALAA+EAQQ RL+FQRLVAMVEGE
Sbjct: 178 LREAPNPENAARLNIAEAKMKELKANMAVLGKEAAAALAAVEAQQQRLSFQRLVAMVEGE 237

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           + YH RIA I G+VE+EMVSEKQRKESAPP IPSE+ S+K +YFLAEA+H F+AASEKEL
Sbjct: 238 RTYHQRIATIFGEVESEMVSEKQRKESAPPAIPSESHSEKTMYFLAEAMHAFSAASEKEL 297

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
           SL VGDYVVVRKVS +GWSEGECKGKAGWFPS  V KRQR+P SNVA E Y
Sbjct: 298 SLNVGDYVVVRKVSHTGWSEGECKGKAGWFPSEYVAKRQRLPTSNVAAEVY 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525323|ref|XP_003531274.1| PREDICTED: uncharacterized protein LOC100820088 [Glycine max]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/351 (78%), Positives = 311/351 (88%), Gaps = 3/351 (0%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
           M++LR+QASKL+EQVAKQQQAVIKQFS+SGYE SDV+VIDEVEMQRH QLEKLYR+TR  
Sbjct: 1   MDALRKQASKLREQVAKQQQAVIKQFSSSGYESSDVVVIDEVEMQRHHQLEKLYRATRSG 60

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           KDFQ+++VK AE FTAIGYKHIE GTKLSEDCC+YGAENN   ++NIL KAA++YGDARK
Sbjct: 61  KDFQKEIVKAAETFTAIGYKHIETGTKLSEDCCKYGAENN---SDNILAKAASVYGDARK 117

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
           HVEKE E+ NRLLS+QVLDPLR MI G PLEDARHLAQRYSRMRQEAE Q  E+ +RQ R
Sbjct: 118 HVEKEHEELNRLLSTQVLDPLRQMINGVPLEDARHLAQRYSRMRQEAEAQREEIVRRQAR 177

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
           VREAP  E VAKLHAAEA+MQELKANMA+LGKEAAAALAA+EAQQ RLTFQRLVAMVEGE
Sbjct: 178 VREAPTAEQVAKLHAAEAKMQELKANMAVLGKEAAAALAAVEAQQQRLTFQRLVAMVEGE 237

Query: 241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
           K +HLR+AAILG++EAEMVS++Q+KESAPPV  SEN S+K +YFLAEA HPF+A SEKEL
Sbjct: 238 KTFHLRVAAILGEIEAEMVSDRQKKESAPPVGISENGSEKTMYFLAEATHPFSAESEKEL 297

Query: 301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
           S   GD+VVVRKVSPSGWSEGEC GKAGWFPSA VEKRQRIP SN+A E Y
Sbjct: 298 SFSKGDFVVVRKVSPSGWSEGECNGKAGWFPSAYVEKRQRIPSSNMAGEVY 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	1.0	1.0	0.732	3.2e-136
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	0.763	0.610	0.383	3.7e-66
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	0.774	0.739	0.469	2.4e-60
TAIR|locus:2120257	169	AT4G39020 "AT4G39020" [Arabido	0.267	0.556	0.448	6.2e-15
UNIPROTKB|I3L6D4	116	I3L6D4 "Uncharacterized protei	0.310	0.939	0.327	1.1e-06
UNIPROTKB|B1ANY6	66	ARHGEF7 "Rho guanine nucleotid	0.173	0.924	0.375	1.4e-05
UNIPROTKB|C9JDI6	61	ARHGEF7 "Rho guanine nucleotid	0.159	0.918	0.389	1.8e-05
UNIPROTKB|A8DCP3	914	ITSN1 "Intersectin 1 short for	0.618	0.237	0.221	1.9e-05
UNIPROTKB|A7Y322	1015	ITSN1 "Intersectin-1" [Homo sa	0.618	0.213	0.221	2.1e-05
UNIPROTKB|E7ERJ1	1020	ITSN1 "Intersectin-1" [Homo sa	0.618	0.212	0.221	2.1e-05

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 257/351 (73%), Positives = 287/351 (81%)

Query:     1 MESLRRQASKLKEXXXXXXXXXXXXFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
             M++ RRQASKL++            FS +GYE SDVMVIDE+EMQRH QL+KLYRSTR  
Sbjct:     1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query:    61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
             K+FQRD+VK AE FT IG +HIEAGTKLSEDCCRYG EN+QNI+ENIL KAAAIYGDARK
Sbjct:    61 KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120

Query:   121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
             HV+KEQEDFN+LL+SQVLDPLRAM+ G+PLEDARHLAQRYSRMRQEAET A EVS+RQ R
Sbjct:   121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180

Query:   181 VREAPNPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAMVEGE 240
             VREAP PENVAKL  AEA+MQELKANM                QQHRLTFQRLVAMVEGE
Sbjct:   181 VREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEGE 240

Query:   241 KNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKEL 300
             KNYHLRIAAIL D+EAEMV+EKQ KESAPP IP+EN S+K  YFLAE IHPF+AASEKEL
Sbjct:   241 KNYHLRIAAILSDIEAEMVTEKQHKESAPPAIPTENGSEKTSYFLAEVIHPFSAASEKEL 300

Query:   301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
              L  GDY+VVRKVS +GW+EGECKGKAGWFP A +EKRQR+P +N A E Y
Sbjct:   301 DLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQRLPTTNFAAEVY 351

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 105/274 (38%), Positives = 158/274 (57%)

Query:     1 MESLRRQASKLKEXXXXXXXXXXXXFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
             ME++R+QA+KL+E                G+  +D +V+DE E+  HQ+L+ LY ST+  
Sbjct:     1 MEAIRKQAAKLREQVARQQQAVLKHL---GHVNADAVVVDEEELHCHQKLQDLYSSTKAA 57

Query:    61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
             K  QR++V+  E F A G K +E G K +ED  +YG EN  + N   L + A  +G + K
Sbjct:    58 KRLQRNIVRGLEGFIATGTKVVEIGLKFAEDFKKYGDEN-PDANTP-LSRVAHHFGTSYK 115

Query:   121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
              VE E+E    +LS QV +P+R MI  APLEDARHL   Y R+RQE E QA +V +R+ +
Sbjct:   116 SVEGERETLLGVLSEQVCEPIRTMIYSAPLEDARHLVNHYDRLRQEVEAQATDVLRRRSK 175

Query:   181 VREAP-NPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAMVEG 239
             ++E+  + E   KL  +E+R+ ELK++M                QQ  +T QRL A+VE 
Sbjct:   176 LKESDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNVTSQRLRALVEA 235

Query:   240 EKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIP 273
             E++YH     IL  + +EM++E++   S+P  +P
Sbjct:   236 ERSYHRNALDILDKLHSEMIAEEEAIGSSPKSLP 269

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 131/279 (46%), Positives = 177/279 (63%)

Query:     1 MESLRRQASKLKEXXXXXXXXXXXXFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
             M+++R+QAS+L+E            F   GY      + DE E+ +HQ+LEKLY STR  
Sbjct:     1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSG---LADEAELNQHQKLEKLYISTRAA 57

Query:    61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
             K +QRD+V+  E +   G K +E GTKLSED  +YG+EN    N N+L +AA  YG AR 
Sbjct:    58 KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCT-NGNVLTRAALNYGRARA 116

Query:   121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
              +EKE+ +  + L +QV +PLRAM+ GAPLEDARHLAQRY RMRQEAE QA EV++RQ +
Sbjct:   117 QMEKERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAK 176

Query:   181 VREAP-NPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAMVEG 239
              RE+  NP+ + KL +AEA++ +LK+NM                QQ +LT +RL++MVE 
Sbjct:   177 ARESQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVES 236

Query:   240 EKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSS 278
             E+ YH R+  IL  +E EMVSE+QR E+  P  PS   S
Sbjct:   237 ERAYHQRVLQILDQLEGEMVSERQRIEA--PSTPSSADS 273

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2120257 AT4G39020 "AT4G39020" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.2e-15, P = 6.2e-15
 Identities = 44/98 (44%), Positives = 61/98 (62%)

Query:   254 VEAEMVSEKQRKESAPPVIPSE--NSSQKAV-YFLAEAIHPFTAASEKELSLGVGDYVVV 310
             +E +  SE  R E+   V  S+  N +  A+ YFL E + P+ A S+ ELSL VGDYVV+
Sbjct:    71 MEEDAYSEWLR-EANDGVNASQMHNGTSDAMGYFLGEVMFPYQADSDFELSLSVGDYVVI 129

Query:   311 RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVAD 348
             R+V  S W+EGECKG AGWF    +E+R R+  + V +
Sbjct:   130 REVVSSVWAEGECKGNAGWFTYIYIERRDRVFATKVIE 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3L6D4 I3L6D4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 37/113 (32%), Positives = 54/113 (47%)

Query:   228 LTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENS--SQKAVYFL 285
             LT   L  +VE  K++ L+      D   +   ++    +      + N   S K V  +
Sbjct:     3 LTLSSLKELVEYYKHHSLKEGFRTLDTTLQFPYKEPEHSAGQRANRAGNRLLSPK-VLGI 61

Query:   286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE+
Sbjct:    62 AVARYDFCARDMRELSLLKGDMVKIYTKMSANGWWRGEVNGRVGWFPSTYVEE 114

GO:0030676 "Rac guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|B1ANY6 ARHGEF7 "Rho guanine nucleotide exchange factor 7" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query:   274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
             ++NS+ + V     A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS 
Sbjct:     2 TDNSNNQLV---VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSN 58

Query:   334 NVEK 337
              V +
Sbjct:    59 YVRE 62

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

UNIPROTKB|C9JDI6 ARHGEF7 "Rho guanine nucleotide exchange factor 7" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query:   274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
             ++NS+ + V     A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS
Sbjct:     2 TDNSNNQLV---VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPS 57

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

UNIPROTKB|A8DCP3 ITSN1 "Intersectin 1 short form variant 14" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 53/239 (22%), Positives = 103/239 (43%)

Query:   118 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA-ETQAVEVSK 176
             AR+H+  + ++  +   S++ +     I    L++ R +  +    +Q++ E + ++  +
Sbjct:   578 ARQHLRDQLDEVEKETRSKLQE---IDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKE 634

Query:   177 RQQRVREAPNPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAM 236
             +++++ E    +  A+  A E   Q L+                   ++ +L  +  V  
Sbjct:   635 QERKIIELEKQKEEAQRRAQERDKQWLE----HVQQEDEHQRPRKLHEEEKLKREESVKK 690

Query:   237 VEGEKNYHLRIAAILGDVEAEMVSEKQRKESAP-------PVIPSENSSQKAVYFLAEAI 289
              +GE+         LG +  +     +    AP       P+  S   + K VY+   A+
Sbjct:   691 KDGEEKGKQEAQDKLGRLFHQHQEPAKPAVQAPWSTAEKGPLTISAQENVKVVYY--RAL 748

Query:   290 HPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV 346
             +PF + S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK   IP + V
Sbjct:   749 YPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK---IPENEV 804

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

UNIPROTKB|A7Y322 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 53/239 (22%), Positives = 103/239 (43%)

Query:   118 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA-ETQAVEVSK 176
             AR+H+  + ++  +   S++ +     I    L++ R +  +    +Q++ E + ++  +
Sbjct:   578 ARQHLRDQLDEVEKETRSKLQE---IDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKE 634

Query:   177 RQQRVREAPNPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAM 236
             +++++ E    +  A+  A E   Q L+                   ++ +L  +  V  
Sbjct:   635 QERKIIELEKQKEEAQRRAQERDKQWLE----HVQQEDEHQRPRKLHEEEKLKREESVKK 690

Query:   237 VEGEKNYHLRIAAILGDVEAEMVSEKQRKESAP-------PVIPSENSSQKAVYFLAEAI 289
              +GE+         LG +  +     +    AP       P+  S   + K VY+   A+
Sbjct:   691 KDGEEKGKQEAQDKLGRLFHQHQEPAKPAVQAPWSTAEKGPLTISAQENVKVVYY--RAL 748

Query:   290 HPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV 346
             +PF + S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK   IP + V
Sbjct:   749 YPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK---IPENEV 804

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

UNIPROTKB|E7ERJ1 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 53/239 (22%), Positives = 103/239 (43%)

Query:   118 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA-ETQAVEVSK 176
             AR+H+  + ++  +   S++ +     I    L++ R +  +    +Q++ E + ++  +
Sbjct:   578 ARQHLRDQLDEVEKETRSKLQE---IDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKE 634

Query:   177 RQQRVREAPNPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAM 236
             +++++ E    +  A+  A E   Q L+                   ++ +L  +  V  
Sbjct:   635 QERKIIELEKQKEEAQRRAQERDKQWLE----HVQQEDEHQRPRKLHEEEKLKREESVKK 690

Query:   237 VEGEKNYHLRIAAILGDVEAEMVSEKQRKESAP-------PVIPSENSSQKAVYFLAEAI 289
              +GE+         LG +  +     +    AP       P+  S   + K VY+   A+
Sbjct:   691 KDGEEKGKQEAQDKLGRLFHQHQEPAKPAVQAPWSTAEKGPLTISAQENVKVVYY--RAL 748

Query:   290 HPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV 346
             +PF + S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK   IP + V
Sbjct:   749 YPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK---IPENEV 804

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
cd07607	209	cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (	1e-77
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	2e-19
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-13
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	6e-11
smart00326	56	smart00326, SH3, Src homology 3 domains	1e-10
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-10
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	2e-09
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	8e-09
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	1e-08
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	3e-08
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	4e-08
pfam00018	47	pfam00018, SH3_1, SH3 domain	4e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	7e-08
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	8e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	8e-08
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	8e-08
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	8e-08
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-07
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-07
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	2e-07
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	4e-07
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	5e-07
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	6e-07
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	7e-07
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	8e-07
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	9e-07
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	1e-06
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-06
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	2e-06
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	3e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	3e-06
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	4e-06
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	4e-06
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	5e-06
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	5e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	5e-06
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	7e-06
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	9e-06
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	1e-05
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	1e-05
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	2e-05
cd11994	59	cd11994, SH3_Intersectin2_4, Fourth Src homology 3	2e-05
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	3e-05
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	3e-05
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	3e-05
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	3e-05
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	3e-05
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	5e-05
cd11795	54	cd11795, SH3_DNMBP_N2, Second N-terminal Src homol	5e-05
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	8e-05
cd11850	56	cd11850, SH3_Abl, Src homology 3 domain of the Pro	9e-05
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	1e-04
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	1e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	1e-04
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	1e-04
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	1e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	1e-04
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	2e-04
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	2e-04
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	2e-04
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	2e-04
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	2e-04
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	2e-04
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	2e-04
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	2e-04
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	3e-04
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	3e-04
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	3e-04
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	3e-04
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	4e-04
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	4e-04
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	4e-04
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	4e-04
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	6e-04
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	8e-04
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	9e-04
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	9e-04
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	0.001
cd11983	52	cd11983, SH3_Shank2, Src homology 3 domain of SH3	0.001
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	0.001
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.001
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	0.001
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	0.002
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.002
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	0.002
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	0.003
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	0.003
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	0.003
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	0.003
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	0.003
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	0.004
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	0.004
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.004

>gnl|CDD|153291 cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

 Score =  236 bits (604), Expect = 1e-77
 Identities = 113/211 (53%), Positives = 155/211 (73%), Gaps = 3/211 (1%)

Query: 48  QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI 107
           Q+LE+LY STR  K FQRD+V+  E F + G K +E GTKL+EDC +YG+EN  ++N   
Sbjct: 1   QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSEN-PSVNTA- 58

Query: 108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 167
           L +A+  YG AR  +EKE+E+ +R+LS QV +PLRAM+ GAPLEDARHL QRY R+RQE 
Sbjct: 59  LSRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEV 118

Query: 168 ETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH 226
           E QA EV++R+ + +E+  NP+N AKL +AE+++ ELK++M  LGKEA +A+ A+E QQ 
Sbjct: 119 EAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSAMLAVEDQQQ 178

Query: 227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 257
           ++T QRL+AMVE E+ YH R A IL  +  E
Sbjct: 179 QVTLQRLLAMVEAERAYHQRAADILDKLHDE 209

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 209

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 5/58 (8%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-----AGWFPSANVEK 337
           +A+ I PFTA +E +LSL VG  V+VRK SPSGW EGE + +      GWFP+  V+ 
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVKL 58

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 23/52 (44%), Positives = 27/52 (51%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           L  A   F   +E ELS   GD + V +V   GW EG   GK GWFPS  V+
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
           A++ F A +  E+S   GD + V   +V+  GW  GE KGK GWFP+  VEK
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPS 332
               A++ +TA    ELS   GD + V + S  GW +G    GK G FPS
Sbjct: 3   PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPS 52

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSA 333
           A A++ + A  + ELS   GD + V +    GW EGE   G+ G FP+ 
Sbjct: 2   ARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPAN 50

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVE 336
            + +H +TA    EL+L  GD V V +  P GW EGE    G+ GWFPS+  E
Sbjct: 2   VQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 50.8 bits (121), Expect = 8e-09
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           +A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE+
Sbjct: 2   IAIARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEE 55

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 23/46 (50%), Positives = 28/46 (60%)

Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           + A  E ELSL  GD V+V + S  GW  GEC G+ GWFPS  V +
Sbjct: 8   YEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A++PF A S KELSL  GD + +R+     W EGE  G+ G FP++ VE
Sbjct: 2   ARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVR-KVSP-SGWSEGECKGKAGWFPSANVE 336
           A  +  + A +E EL+L  GD V +  K     GW +GE  GK G FP   VE
Sbjct: 2   ARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPS 332
           A++ +TA    ELS   GD ++V + S  GW +G  K GK G  PS
Sbjct: 2   ALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           + A    ELSL  GD V V     +GW EGE  G+ G  PS+ VE+
Sbjct: 8   YVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           +A++ +TA  E ELSL  GD + V +    GW  GE  GK G FP+  VE
Sbjct: 3   KALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A++ + A    ELS   GD + + K  PSGW  G  +GK G FP   VEK
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 48.1 bits (114), Expect = 8e-08
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVR--KVSPSGWSEGECKGKAGWFPSANVEK 337
           A++PF A S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK
Sbjct: 4   ALYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK 55

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 47.9 bits (114), Expect = 8e-08
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
           A++PF A +  E+S   GD + V  + V   GW  G  +G  GWFP   VEK
Sbjct: 6   ALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A+A + F A   +ELSL  GD V +  K    GW  GE  G+ GWFPS  VE+
Sbjct: 2   AKARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVEE 54

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           F   +E ELS+  GD + V +V   GW EG   GK GWFPS  V +
Sbjct: 10  FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVRE 55

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPS 332
           EA++ + A  + E+S+ VGD + V +    SGW+ GE  G  G FP+
Sbjct: 3   EALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPT 49

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            AI  + A  + E+SL  G+ V V + + SGW       K GW P++ +E 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 9/52 (17%)

Query: 288 AIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGE-----CKGKAGWFPS 332
           A++ FT  S+ +LS   GD  YV+ +   PSGW +G       K K GWFPS
Sbjct: 4   ALYDFTPKSKNQLSFKAGDIIYVLNK--DPSGWWDGVIISSSGKVKRGWFPS 53

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 45.4 bits (107), Expect = 6e-07
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
           A+ P+ + +E E+SL  G+ + V  V   G+ EG+ KG+ GWFPS
Sbjct: 5   AVKPYQSQAEGEISLSKGEKIKVLSVGEGGFWEGQVKGRVGWFPS 49

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 45.5 bits (107), Expect = 7e-07
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-----GWFPSANVE 336
           +A+ I  +TA   ++L+L  G  +++RK +P GW EGE + +      GWFP+  V+
Sbjct: 5   IAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVK 61

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 45.4 bits (107), Expect = 8e-07
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 8   FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           A  +   +A  ++EL L  GD V +  +   GW  GE  G+ G FP   V
Sbjct: 2   ARVLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           A A++ FT  +E++LS   GD ++V +   + WS G   G+ G FP A
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRA 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A++ +TA  + ELS   GD + V K +  GW EG   G  G FP   VE
Sbjct: 4   ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A A++ F A + KELS   GD V + +     W EGE  G+ G FP + VEK
Sbjct: 3   ARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A+A + F A    ELSL  GD + ++ K    GW  GE  G+ GWFP+  VE+
Sbjct: 2   AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVEE 54

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 18/50 (36%), Positives = 22/50 (44%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
               + A    EL+L VGD +   K    GW EG   GK G FP   V+ 
Sbjct: 4   VEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFVKV 53

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            + +  +T  +E EL L VGD + V      GW EG+  GK G FPS  V+
Sbjct: 2   CKVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
              A+  + A+  ++L    GD ++V       W EG+CKGK G FPSA VE
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 20/37 (54%), Positives = 24/37 (64%)

Query: 300 LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           L+L VGD V V K++ SG  EGE  GK G FP  +VE
Sbjct: 20  LALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVE 56

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 286 AEAIHPFTAAS-EKELSLGVGDYV-VVRKVSP----SGWSEGECK-GKAGWFPSANVE 336
             A++ FT  + E ELSL  GD V V+ K  P    S W +G  + G+ GWFPS  VE
Sbjct: 2   CRALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A++ + A    ELS   GD + +   S   W +  C GK G  PS  VE
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
           A+  ++   E E+SL  GD V V  +   G+ EG  +G+ GWFPS
Sbjct: 4   AVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFPS 48

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 42.3 bits (99), Expect = 9e-06
 Identities = 20/44 (45%), Positives = 24/44 (54%)

Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           +TA  E ELSL  G  V+V +    GW  G   G+ GWFPS  V
Sbjct: 10  YTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 285 LAEAIHPFTAASEKE-LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           L   ++ FT    ++ LS   G+ + V +    GW EGE  G  GWFP++ V
Sbjct: 1   LCRTLYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 292 FTAASEKELSLGVGDYV-VVRK-VSPSGWSEGECKGKAGWFPSANVE 336
           +   +  EL+L  GD + V+ K     GW EGE  G+ G+FP   V 
Sbjct: 8   YNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
           A A + F A   +ELSL  GD V +  R     GW +GE  G+ GWFPS  VE+
Sbjct: 3   AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 56

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212927 cd11994, SH3_Intersectin2_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-2

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-----KGKAGWFPSANVE 336
           +A+    + A+  ++LSL  G  +++ K + SGW  GE      K + GWFP+++V+
Sbjct: 1   IAQVTTAYVASGVEQLSLSPGQLILILKKNSSGWWLGELQARGKKRQKGWFPASHVK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A+A++ +      +LS   GD +++RK     W  GEC GK G+FP++ V+
Sbjct: 2   AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           AI  +  +S+ E++L  GD V V + S +GW   + K K GW P++ +E
Sbjct: 4   AIADYEKSSKSEMALKTGDVVEVVEKSENGWWFCQLKAKRGWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             +A++ F      EL    GD + V   S   W +GE +G+ G FP+  V+ 
Sbjct: 1   RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 331
           A++ F A    EL   VGD + +      GW EGE KG+ G FP
Sbjct: 4   ALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFP 47

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 288 AIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A+ P+TA +E ELS   GD + V+ K  P  W  GE  G+ G FPS  VE
Sbjct: 4   ALFPYTAQNEDELSFQKGDIINVLSKDDPDWW-RGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG--ECKGKAGWFPSANVEK 337
            I P+   SE EL L  GD V V K    GW +G  +  GK G FP + VE 
Sbjct: 4   VIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVES 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212729 cd11795, SH3_DNMBP_N2, Second N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 289 IHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 337
           I  FT+     L+L  GD V +   + SGW +G  C G +G+FPS+ V++
Sbjct: 5   IEAFTSQEPGHLNLQRGDLVELTGTTDSGWLQGRSCWGSSGFFPSSCVQE 54

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVV-RKVSPSGWSEGE-CKGKAGWFPSANVE 336
              A++ F +    ELSL  G+ + + R+    GW EG   +G+ G FPS+ VE
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212784 cd11850, SH3_Abl, Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECK--GKAGWFPS 332
           A++ F A+ E +LS+  G+ + V   + +G W E E K  G  GW PS
Sbjct: 4   ALYDFVASGENQLSIKKGEQLRVLGYNKNGEWCEAESKSTGGQGWVPS 51

Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) PTK that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 331
           + + P+ A +E EL++  GD V +  +    +GW EGE  G+ G FP
Sbjct: 3   KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFP 49

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           AI+ ++   + ELS   G  + V K +  GW EG C G  G FP   VE
Sbjct: 4   AIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
           A+  ++   E E+ L  G+ V V  +   G+ EG  KG+ GWFP+
Sbjct: 5   AVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFPA 49

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSP---SGWSEGECKGKAGWFPSANVE 336
           L  A++ + A S++ELS   G  + ++RK       GW EGE  G+ G FPS  VE
Sbjct: 1   LVRALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFP 331
           A A++P+ A  E  LS   GD + V +     W  GE   G+ GWFP
Sbjct: 2   ATALYPWRAKKENHLSFAKGDIITVLE-QQEMWWFGELEGGEEGWFP 47

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           LAEA+        +EL    GD + V  +S   W  G  + + GWFP++ V
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 331
           A A++ FT  +E ELS   GD +   +     W  GE +GK+G FP
Sbjct: 2   ARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFP 47

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V 
Sbjct: 2   VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVR----KVSPSGWSEGEC--KGKAGWFPSANVEK 337
            ++P+T   E EL L  GDY+ V       S  GW EG     G +G  P    EK
Sbjct: 4   VLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTEK 59

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 287 EAIHPF--TAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 331
           EAI  F   A  E EL++ VGD +   K    GW EGE KG+ G FP
Sbjct: 1   EAIVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 22/44 (50%)

Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           + A  E ELSL  G  V V +    GW  G   G+ GWFPS  V
Sbjct: 9   YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSAN 334
             A++ F      +LS   GD + V  R  S   W EG  +G+ G FP AN
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFP-AN 51

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A   F A + KEL L  GD V + K     W EGE  G+ G FP + +E
Sbjct: 3   ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 288 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 331
           A+  +   +E EL    G+ +++  +     GW +GE  GK G FP
Sbjct: 6   ALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFP 51

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A++ + AA + E+S    D +   ++   GW  G C+GK G FP+  VE
Sbjct: 2   AVALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A++ +TA +E ELS   G  + V       W +GE  G  G FPS  V+
Sbjct: 5   AMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           F A S KEL+L  GD V + K     W EGE  G+ G FP+  VE
Sbjct: 9   FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A+A++ + AA + ELS    D ++  +     W  GEC G  G FPS  VE
Sbjct: 2   AKALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVE 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPS 332
           E I  +TA    ELSL   D V+V +    GW  GE    G+ GWFPS
Sbjct: 3   EIIKAYTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGERGWFPS 50

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            A+H + A   ++L    GD + V       W EG   G+ G FP   V 
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           AEA+  FT  S+ EL+   GD + +       W EG  +G  G FP + V+
Sbjct: 2   AEALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFVK 52

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 292 FTAASEKELSLGVGDYVV-VRKVSPSGWSEGECKGKAGWFP 331
           + A  E EL++ VG+ +  V+K+   GW EGE  G+ G FP
Sbjct: 8   YDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFP 48

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
             A++ F A  + EL    GD + V   S   W +G   GK G FP+  V 
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVE 336
           A+A++ + AA + E+S   GD +   +    GW  G   KG+ G FP+  VE
Sbjct: 2   AKALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 337
           + +HP+ +    ELSL + D + +   +  GW  GE     + GWFPS+ VE+
Sbjct: 3   QCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVEE 55

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 289 IHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVE 336
           I  + A    EL+L   D ++VR+ S  GW EG     G+ GWFP ++VE
Sbjct: 5   IRSYKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
           AI+ F AA + EL+   GD + +   S   W +GE     G FPS
Sbjct: 5   AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPS 49

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212916 cd11983, SH3_Shank2, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 2

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
            +  +    E E+ L  GD V V  +   G+ EG  +G  GWFP+  V
Sbjct: 5   VVKSYQPQVEGEIPLHKGDRVKVLSIGEGGFWEGSARGHVGWFPAECV 52

Shank2, also called ProSAP1 (Proline-rich synapse-associated protein 1) or CortBP1 (Cortactin-binding protein 1), is found in neurons, glia, endocrine cells, liver, and kidney. It plays a role in regulating dendritic spine volume and branching and postsynaptic clustering. Mutations in the Shank2 gene are associated with autism spectrum disorder and mental retardation. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A  +H F A    +LSL  G+ V + +   + W  G+CK   G FP+ +V+
Sbjct: 2   AVVLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 20/49 (40%), Positives = 24/49 (48%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           AI+ +T   E ELS   G  + V K +  GW EG   G  G FP   VE
Sbjct: 7   AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGEC--KGKAGWFPSANVEK 337
           +A++P  A  E +LS   GD + +    P  GW  GE    G+ GWFP A  E 
Sbjct: 4   KALYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTEP 57

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A++ +    + E+S    + +   ++   GW +G C G  G FP+  VE
Sbjct: 3   AVALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            I+P+TA  + E++L  G  V V + +  GW +   +GK GW P++ ++K
Sbjct: 5   VIYPYTARDQDEINLEKGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK 54

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A++ F AA + EL+   G+ + V   S   W +G      G FP+  V  
Sbjct: 5   ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 282 VYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSP----SGWSEG--ECKGKAGWFPSAN 334
           V +   A H +TA    EL+   GD + V+    P     GW  G  E  G  G FP  N
Sbjct: 1   VLYKVRATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFP-EN 59

Query: 335 VEKR 338
             +R
Sbjct: 60  FTER 63

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
              ++ +TA  + ELS+  GD V V +    GW   E  G+ G  P   +EK
Sbjct: 2   YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           AEA+      + +EL+   GD + V   S   W  G+   + GWFP++ V
Sbjct: 7   AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 56

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 19/50 (38%), Positives = 24/50 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
             AI  F  +  +EL L  GD + V KV    W  G  +G  G FPS+ V
Sbjct: 2   VRAIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGTKEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A + F A +  ELS   GD + + +     W EG   G+ G FP + V+
Sbjct: 2   ARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            A+A+  +TA  +  L+    D + V +   + W  GE  G  GWFP + V+
Sbjct: 1   KAQALCSWTAKKDNHLNFSKNDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 289 IHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           I  F A  +  +S   G  V V   +PSGW   +  GK GW PS+ +EK
Sbjct: 5   IGEFQATIQDGISFQKGQKVEVIDKNPSGWWYVKIDGKEGWAPSSYIEK 53

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS---GWSEGECKGKAGWFPSANVE 336
           A A++   A  E ELS   G   ++  V PS   GW EG   G+ G  P   VE
Sbjct: 2   ARALYACKAEDESELSFEPGQ--IITNVQPSDEPGWLEGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
cd07607	209	BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai	100.0
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	100.0
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	99.95
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	99.95
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	99.95
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	99.94
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	99.94
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	99.93
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	99.93
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.9
cd07620	257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.9
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	99.88
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.88
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	99.85
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	99.82
KOG3725	375	consensus SH3 domain protein SH3GLB [Signal transd	99.72
KOG3771	460	consensus Amphiphysin [Intracellular trafficking,	99.68
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.52
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.51
smart00721	239	BAR BAR domain.	99.49
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.47
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	99.44
cd07612	211	BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.4
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.34
cd07611	211	BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR)	99.34
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.28
cd07590	225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.25
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	99.21
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.12
KOG2199	462	consensus Signal transducing adaptor protein STAM/	99.09
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	99.09
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.08
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.05
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.04
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.02
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	99.01
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	98.99
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	98.91
cd07639	200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.89
cd07606	202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	98.87
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	98.86
KOG2856	472	consensus Adaptor protein PACSIN [Signal transduct	98.85
cd07591	224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	98.83
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.82
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.8
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	98.77
cd07602	207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	98.69
KOG3523	695	consensus Putative guanine nucleotide exchange fac	98.68
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	98.67
PF10455	289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	98.65
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	98.59
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.57
cd07601	215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	98.55
cd07636	207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	98.53
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.5
KOG2546	483	consensus Abl interactor ABI-1, contains SH3 domai	98.49
cd07638	200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.47
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.46
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	98.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.36
KOG3655	484	consensus Drebrins and related actin binding prote	98.31
KOG1702	264	consensus Nebulin repeat protein [Cytoskeleton]	98.3
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	98.28
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	98.24
cd07589	195	BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of	98.23
cd07641	215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.17
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	98.17
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	98.15
KOG3875	362	consensus Peroxisomal biogenesis protein peroxin [	98.13
KOG4792	293	consensus Crk family adapters [Signal transduction	98.05
cd07633	207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.03
cd07640	213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	98.0
KOG1843	473	consensus Uncharacterized conserved protein [Funct	97.98
KOG4773	386	consensus NADPH oxidase [Energy production and con	97.89
cd07631	215	BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of	97.86
PF06456	229	Arfaptin: Arfaptin-like domain; InterPro: IPR01050	97.81
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	97.77
KOG2222	848	consensus Uncharacterized conserved protein, conta	97.76
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	97.69
cd07605	223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	97.61
cd07632	215	BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.58
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	97.39
cd07624	200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	97.38
cd07643	231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	97.34
KOG4429	421	consensus Uncharacterized conserved protein, conta	97.3
KOG4792	293	consensus Crk family adapters [Signal transduction	97.3
KOG2528	490	consensus Sorting nexin SNX9/SH3PX1 and related pr	97.28
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.27
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.26
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	97.22
cd07625	230	BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of	97.01
PF06730	219	FAM92: FAM92 protein; InterPro: IPR009602 This fam	96.76
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	96.61
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	96.6
cd07660	201	BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain	96.53
KOG3775	482	consensus Mitogen-activated protein kinase scaffol	96.51
KOG4575	874	consensus TGc (transglutaminase/protease-like) dom	96.49
KOG3557	721	consensus Epidermal growth factor receptor kinase	96.26
cd00011	203	BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do	96.25
KOG0040	2399	consensus Ca2+-binding actin-bundling protein (spe	96.24
cd07628	185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	96.15
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	96.06
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	96.01
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.85
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.69
cd07621	219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	95.63
KOG0521	785	consensus Putative GTPase activating proteins (GAP	95.49
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	95.44
cd07646	232	I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th	95.41
cd07663	218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.38
cd07622	201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.26
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	95.16
cd07659	215	BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of	95.02
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	94.77
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	94.49
cd07645	226	I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as	94.44
cd07626	199	BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain	94.37
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	93.61
cd07630	198	BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain	93.34
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	93.22
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	91.95
cd07662	218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	91.64
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	91.48
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	91.07
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	90.9
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	90.6
cd07629	187	BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of	90.58
cd07644	215	I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as	90.38
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	89.28
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	88.02
smart00287	63	SH3b Bacterial SH3 domain homologues.	87.72
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	87.62
PRK10884	206	SH3 domain-containing protein; Provisional	87.2
KOG3651	429	consensus Protein kinase C, alpha binding protein	86.31
KOG3812	475	consensus L-type voltage-dependent Ca2+ channel, b	84.9
cd07652	234	F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am	84.14
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	82.86
cd07610	191	FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or	82.04
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	81.26
cd07673	269	F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A	80.71

>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

Probab=100.00  E-value=1.4e-79  Score=546.48  Aligned_cols=207  Identities=54%  Similarity=0.842  Sum_probs=203.4

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  127 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~  127 (351)
                      |+|||||+||||||||||||||||||||++|+||+|++++|+|||||||+|++  +.+++|++|.++||.|+++|+++++
T Consensus         1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~--~~~~~LsrAa~~yG~a~~~mEkEre   78 (209)
T cd07607           1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP--SVNTALSRASLHYGSARNQMEKERE   78 (209)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC--CcccHHHHHHHHHhHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999998  4677899999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHH
Q 018756          128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKAN  206 (351)
Q Consensus       128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~  206 (351)
                      +|++.|++||+|||++|++|+||||||||+|+||||||++|+|++||.||+.|+||+. |||++.||+.||+||+|||++
T Consensus        79 ~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~  158 (209)
T cd07607          79 NLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSS  158 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987 999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          207 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       207 m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      |+.|||||.+||.+||+||||+|+++|++||+++++||+++++||++|+.
T Consensus       159 M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~  208 (209)
T cd07607         159 MNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD  208 (209)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999985

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2e-52  Score=396.68  Aligned_cols=293  Identities=20%  Similarity=0.336  Sum_probs=235.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCccceecHH--HHH-----HHHHHHHHHhhhhc---------hhhhhHHHHHHhHHHh
Q 018756           12 KEQVAKQQQAVIKQFSASGYERSDVMVIDEV--EMQ-----RHQQLEKLYRSTRG---------TKDFQRDLVKVAEVFT   75 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~---------~~~~q~~~vr~~~~~~   75 (351)
                      +.|.+|-+|-+=..|||.-     ..=+|..  ||.     +.--+-+|+.+|--         ||----.++.-|+|-.
T Consensus         2 ~kqF~ka~Q~~sEK~ggae-----~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~   76 (366)
T KOG1118|consen    2 KKQFNKASQWTSEKVGGAE-----GTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQV   76 (366)
T ss_pred             chHHHHHHHHhcccccccc-----CCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccc
Confidence            4566777888888888431     2222322  222     23345566666521         1222224666677755


Q ss_pred             -hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--
Q 018756           76 -AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--  152 (351)
Q Consensus        76 -~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--  152 (351)
                       ..||||+|+  .||+||.+||.++|   .+|+||.+|+++|+||++|++++++|+++|+++|||||++++.++++++  
T Consensus        77 k~~~ypq~e~--~Lg~~mik~gkeLg---~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~h  151 (366)
T KOG1118|consen   77 KEKGYPQTEG--LLGDVMIKHGKELG---DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQH  151 (366)
T ss_pred             cCCCCccchh--HHHHHHHHHHHhcC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Confidence             579999999  89999999999999   8999999999999999999999999999999999999999999999985  


Q ss_pred             ------hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHh
Q 018756          153 ------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQ  225 (351)
Q Consensus       153 ------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qq  225 (351)
                            ||||||||++             +|+.|++|       ++|++|.+||+|+++.       |+..|.++ |.+.
T Consensus       152 h~KKLEgRRldyD~kk-------------kk~~K~~d-------EelrqA~eKfEESkE~-------aE~sM~nlle~d~  204 (366)
T KOG1118|consen  152 HRKKLEGRRLDYDYKK-------------KKQGKIKD-------EELRQALEKFEESKEL-------AEDSMFNLLENDV  204 (366)
T ss_pred             HHHHhhhhhhHHHHHH-------------HHhccCCh-------HHHHHHHHHHHHHHHH-------HHHHHHHHHhcCH
Confidence                  9999999999             89999764       8999999999999998       99999975 6677


Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh------hhccCCCCCC---------CCC---C------------
Q 018756          226 HRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE------KQRKESAPPV---------IPS---E------------  275 (351)
Q Consensus       226 q~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se------~~r~esa~~~---------~~~---~------------  275 (351)
                      +|  ++||.+||+++++||+++++||+.|...+.+.      +++.++.|.+         .++   +            
T Consensus       205 eq--vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~~~~an~f~p~~~p~~~~g~~s~T~~t~~~  282 (366)
T KOG1118|consen  205 EQ--VSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPRSVLANEFAPSGPPIQLNGKLSKTTSTPQS  282 (366)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCcccccccCCCCCCccccCCCCCcCccCccc
Confidence            77  89999999999999999999999999987652      2222222111         000   0            


Q ss_pred             ------------CCC----ccccceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          276 ------------NSS----QKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       276 ------------s~~----~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                                  +.+    +++..++|+++|||+|++++||.|+.||+|.|++++++|||+|+..|.+|+||.|||+++.
T Consensus       283 ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlv  362 (366)
T KOG1118|consen  283 ASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLV  362 (366)
T ss_pred             cCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEec
Confidence                        000    2345678999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 018756          340 RIPV  343 (351)
Q Consensus       340 ~~p~  343 (351)
                      |+|.
T Consensus       363 pl~~  366 (366)
T KOG1118|consen  363 PLPQ  366 (366)
T ss_pred             cCCC
Confidence            9874

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=99.95  E-value=2.2e-27  Score=220.74  Aligned_cols=151  Identities=25%  Similarity=0.400  Sum_probs=137.1

Q ss_pred             hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 018756           76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED---  152 (351)
Q Consensus        76 ~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~---  152 (351)
                      .++|||+|+  .||+||.+||.++|   .+|+||.||+.||+|+++|+.++.+++..++++||+||+.+..++++++   
T Consensus        59 ~~~~p~~~~--~Lg~~M~~~G~elg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~  133 (223)
T cd07613          59 GPGYPQAEA--LLAEAMLKFGRELG---DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHH  133 (223)
T ss_pred             CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999  89999999999999   8999999999999999999999999999999999999999999999875   


Q ss_pred             -----hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 018756          153 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH  226 (351)
Q Consensus       153 -----~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq  226 (351)
                           +|||||||+|             +|..++     ++  ++|+.|+.||+++++.       +...|.++ ++...
T Consensus       134 RKkLe~rRLd~D~~K-------------~r~~k~-----~e--eElr~A~~kFees~E~-------a~~~M~n~l~~e~e  186 (223)
T cd07613         134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQALEKFDESKEI-------AESSMFNLLEMDIE  186 (223)
T ss_pred             HHHHHHHHHhHHHHH-------------HhCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHcCch
Confidence                 9999999998             666554     33  8999999999999998       88888875 44455


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      +  +++|.+||+|+++||++|.+||.+|...+..
T Consensus       187 ~--~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~  218 (223)
T cd07613         187 Q--VSQLSALVQAQLEYHKQATQILQQVTVKLED  218 (223)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  7899999999999999999999999998863

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=99.95  E-value=7.6e-27  Score=216.49  Aligned_cols=173  Identities=17%  Similarity=0.200  Sum_probs=148.5

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHhHHHh-------------------hcCcchhhhhhhhhHHHhhhhccCCCCCCCCc
Q 018756           47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINENI  107 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-------------------~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~  107 (351)
                      .++|++.--+|+.+-   .+|++.++.++                   .+++||+|.  .||+||.+||.++|   .+|+
T Consensus        19 f~~l~~~~D~tk~~~---~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~--~Lg~~M~~~g~~~g---~~s~   90 (220)
T cd07617          19 FENLLARADSTKNWT---EKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAE--LLGQYMTEAANDFG---PGTP   90 (220)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHH--HHHHHHHHHHHhcC---CCCc
Confidence            567888877777654   24554444432                   457899999  89999999999999   7999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHHH
Q 018756          108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQ  179 (351)
Q Consensus       108 ~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~  179 (351)
                      ||.||+.||+|+++|++++++++..++++||+||++++.++++++        +|||||||.|             +|+.
T Consensus        91 ~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K-------------~r~~  157 (220)
T cd07617          91 YGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACK-------------ARLK  157 (220)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHh
Confidence            999999999999999999999999999999999999999999875        9999999999             6655


Q ss_pred             hhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018756          180 RVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE  257 (351)
Q Consensus       180 k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~  257 (351)
                      |      ++  .+|++|++||++.++.       +...|..| +.+..+  +.+|.+||+|+++||++|++||.+|...
T Consensus       158 k------ae--~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~--l~~L~~lv~AQl~Yh~q~~e~L~~l~~~  219 (220)
T cd07617         158 K------AE--HELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH--LRCLHEFVEAQATYYAQCYRHMLDLQKQ  219 (220)
T ss_pred             c------cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5      34  7999999999999997       78888876 444555  8999999999999999999999999865

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=99.95  E-value=9.8e-27  Score=216.51  Aligned_cols=154  Identities=23%  Similarity=0.386  Sum_probs=138.5

Q ss_pred             HHHh-hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh
Q 018756           72 EVFT-AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL  150 (351)
Q Consensus        72 ~~~~-~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~  150 (351)
                      +|=. .++|||.|+  .||+||.+||.++|   .+|+||.||+.||+|+++|+.++.+++..++++||+||+.++.++++
T Consensus        54 ~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik  128 (223)
T cd07615          54 RGQVKTTGYPQTEG--LLGDCMLRYGRELG---EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLK  128 (223)
T ss_pred             hcccccCCCCCchh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443 578999999  89999999999999   89999999999999999999999999999999999999999999998


Q ss_pred             hh--------hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-
Q 018756          151 ED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-  221 (351)
Q Consensus       151 e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-  221 (351)
                      ++        +||||+||.|             +|..+.     ++  +++++|+.||+++++.       +...|.++ 
T Consensus       129 ~i~k~RKkLe~rRLd~D~~K-------------~r~~k~-----~~--eE~~~A~~kfees~E~-------a~~~M~n~l  181 (223)
T cd07615         129 EIGHHLKKLEGRRLDFDYKK-------------KRQGKI-----PD--EEIRQAVEKFEESKEL-------AERSMFNFL  181 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------------HcCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            74        9999999998             555553     23  7999999999999998       88889875 


Q ss_pred             HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756          222 EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       222 e~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~  259 (351)
                      +.+.++  +++|.+||+|+++||++|++||.+|...+.
T Consensus       182 e~e~e~--~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~  217 (223)
T cd07615         182 ENDVEQ--VSQLSVLIEAALDYHRQSTEILEDLQSKLQ  217 (223)
T ss_pred             HcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555  899999999999999999999999999886

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=99.94  E-value=3.9e-26  Score=212.61  Aligned_cols=150  Identities=25%  Similarity=0.422  Sum_probs=135.4

Q ss_pred             hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 018756           76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED---  152 (351)
Q Consensus        76 ~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~---  152 (351)
                      .+||||+|+  .||+||.+||.++|   ++|.||.||+.||+|+++|+.++.+++..++++|++||+.++.++++++   
T Consensus        59 ~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~  133 (223)
T cd07614          59 NPGYPQSEG--LLGETMIRYGKELG---DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHH  133 (223)
T ss_pred             CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999  89999999999999   8999999999999999999999999999999999999999999999874   


Q ss_pred             -----hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 018756          153 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH  226 (351)
Q Consensus       153 -----~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq  226 (351)
                           +|||||||.|             +|..|.     ++  ++|+.|.+||+++++.       +...|..+ +.+..
T Consensus       134 RKkLe~rRLdyD~~K-------------~r~~k~-----~e--eelr~a~ekFees~E~-------a~~~M~~il~~e~e  186 (223)
T cd07614         134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQAMEKFEESKEV-------AETSMHNLLETDIE  186 (223)
T ss_pred             HHHHHHHHHHHHHHH-------------HcCCCC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCChH
Confidence                 9999999998             555553     33  7999999999999998       88888875 33344


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756          227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~  259 (351)
                      +  +.+|..||+|+++||++|++||.+|...+.
T Consensus       187 ~--~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~  217 (223)
T cd07614         187 Q--VSQLSALVDAQLDYHRQAVQILDELAEKLK  217 (223)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  789999999999999999999999999887

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=99.94  E-value=5.5e-26  Score=212.25  Aligned_cols=184  Identities=14%  Similarity=0.178  Sum_probs=149.4

Q ss_pred             HHHHHHHHhhhhchhh-hhHH----------------HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchh
Q 018756           47 HQQLEKLYRSTRGTKD-FQRD----------------LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILP  109 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~-~q~~----------------~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~  109 (351)
                      .++|||.--+|+.+-+ ..+.                ++..+.|=+ ++|||+|.  .||+||.+||.++|   .+|.||
T Consensus        19 f~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~-~~~~~~~~--~Lg~~M~~~g~~~g---~~S~~G   92 (229)
T cd07616          19 LENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKA-PSRMNNPE--LLGQYMIDAGNEFG---PGTAYG   92 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccC-CCCCChHH--HHHHHHHHHHHhcC---CCCcHH
Confidence            5677777777765532 2221                122233322 68999999  89999999999999   899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHHHhh
Q 018756          110 KAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRV  181 (351)
Q Consensus       110 ~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~  181 (351)
                      .||+.||+|+++|++++.+|...++++|++||++.+.++++++        +|||||||.|             .|..|.
T Consensus        93 ~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K-------------~r~~kA  159 (229)
T cd07616          93 NALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAK-------------TRLKKA  159 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcC
Confidence            9999999999999999999999999999999999999999874        9999999999             666664


Q ss_pred             hcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756          182 REAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  258 (351)
Q Consensus       182 re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~-qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l  258 (351)
                      +... .+....+|+.|++||++..+.       +...|..+-+ +..+  +.+|..||+|++.||++|++||.+|...+
T Consensus       160 k~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~--~~~L~~lv~AQl~Yh~~~~e~L~~L~~~l  229 (229)
T cd07616         160 KVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH--LRCLNDFVEAQMTYYAQCYQYMLDLQKQL  229 (229)
T ss_pred             CcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4333 443458999999999999998       7777776643 3444  78999999999999999999999998653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=99.93  E-value=4.3e-25  Score=205.98  Aligned_cols=151  Identities=25%  Similarity=0.407  Sum_probs=134.2

Q ss_pred             hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 018756           76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED---  152 (351)
Q Consensus        76 ~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~---  152 (351)
                      ..+|||+|+  .||+||.+||.++|   ++|.||.||+.||+|+++|+.++.+++..++++|++||+.++.++++++   
T Consensus        59 ~~~~p~~~~--~Lg~~M~~~g~elg---~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~  133 (223)
T cd07592          59 STKYPQPEG--LLGEVMLKYGRELG---EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHH  133 (223)
T ss_pred             ccCCCCccc--HHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999  89999999999999   7899999999999999999999999999999999999999999998874   


Q ss_pred             -----hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 018756          153 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH  226 (351)
Q Consensus       153 -----~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq  226 (351)
                           +|||||||.|             +|..|.     ++  ++|+.|+.||+++++.       +...|..+ +.+..
T Consensus       134 RKkLe~rRLdyD~~k-------------~k~~k~-----~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e  186 (223)
T cd07592         134 RKKLEGRRLDYDYKK-------------RKQGKG-----PD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE  186 (223)
T ss_pred             HHHHHHHHHHHHHHH-------------HhcccC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH
Confidence                 9999999998             444442     34  8999999999999998       77788765 33344


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      +  +..|..||+|+++||++|+++|.+|..++..
T Consensus       187 ~--~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~  218 (223)
T cd07592         187 Q--VSQLSALVEAQLDYHRQSAEILEELQSKLQE  218 (223)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  7899999999999999999999999998863

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=99.93  E-value=1.6e-24  Score=202.68  Aligned_cols=180  Identities=17%  Similarity=0.242  Sum_probs=147.7

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHhHHHh--------------------hcCcchhhhhhhhhHHHhhhhccCCCCCCCC
Q 018756           47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT--------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINEN  106 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~--------------------~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~  106 (351)
                      ..+||+-.-+|+.+-+   +|++..+.++                    ..+||+.|.   ||+||..||.++|   .+|
T Consensus        19 f~~le~~~d~~~~~~e---~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~---Lg~~M~~~g~~lg---~~S   89 (229)
T cd07594          19 FENLLQRADKTKVWTE---KILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQ---LGQAMIEAGNDFG---PGT   89 (229)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHH---HHHHHHHHHhhCC---CCC
Confidence            4567777766665432   3444444443                    458999986   9999999999999   789


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHH
Q 018756          107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ  178 (351)
Q Consensus       107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq  178 (351)
                      .||.||+.||+|+++|+.++.+++..++++||+||++++.++++++        +||||||+.|             .|.
T Consensus        90 ~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k-------------~r~  156 (229)
T cd07594          90 AYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACK-------------TRV  156 (229)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence            9999999999999999999999999999999999999999999875        9999999999             555


Q ss_pred             HhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          179 QRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       179 ~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~-qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      .|.+-.. .+....+|+.|+.||++..+.       +...|..|-+ +..+  +.+|..||+|+++||++|++||.+|..
T Consensus       157 ~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~--~~~L~~lv~AQl~Yh~q~~e~L~~l~~  227 (229)
T cd07594         157 KKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH--LRCLRDFVEAQMTYYAQCYQYMDDLQR  227 (229)
T ss_pred             hhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5543111 223348999999999999998       8888887633 4455  889999999999999999999999986


Q ss_pred             H
Q 018756          257 E  257 (351)
Q Consensus       257 ~  257 (351)
                      .
T Consensus       228 ~  228 (229)
T cd07594         228 Q  228 (229)
T ss_pred             h
Confidence            5

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=99.90  E-value=1.3e-22  Score=191.29  Aligned_cols=200  Identities=14%  Similarity=0.160  Sum_probs=141.8

Q ss_pred             HHHHHHHHhhhhchhh-hhHHHHHHhHHH-------hhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHH
Q 018756           47 HQQLEKLYRSTRGTKD-FQRDLVKVAEVF-------TAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDA  118 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~-~q~~~vr~~~~~-------~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a  118 (351)
                      .++|||---+|+.+-| ..|.+.-|+-+-       -..+|||+    .||+||.+||+++|   .+|.||.||..||+|
T Consensus        17 ~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~----~L~q~M~~~g~elg---~~s~lg~aL~~~gea   89 (248)
T cd07619          17 LLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLT----TLAQCMVEGAAVLG---DDSLLGKMLKLCGET   89 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHH----HHHHHHHHHHHhcC---CCchHHHHHHHHHHH
Confidence            5678888777776543 334433333321       23467765    59999999999999   789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHH--HhhhcCCCcc
Q 018756          119 RKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ--QRVREAPNPE  188 (351)
Q Consensus       119 ~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq--~k~re~~~~~  188 (351)
                      +++|++++.+++..++++|++||++++++|++++        +||||+||.|-|..--+-...-..+.  .+.+   ..+
T Consensus        90 ~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k---~e~  166 (248)
T cd07619          90 EDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAK---ADA  166 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCc---cHH
Confidence            9999999999999999999999999999999875        99999999994433100000000000  0111   122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhcc
Q 018756          189 NVAKLHAAEARMQELKANMAILGKEAAAALAA-IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRK  265 (351)
Q Consensus       189 ~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~-ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se~~r~  265 (351)
                      +-.+++.|+.+|+..|..       ++..|.. +....+.  +..|+.||+|+.+||+++++||+.+...+......|
T Consensus       167 lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~~e~e~--~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~  235 (248)
T cd07619         167 LREEMEEAANRMEICRDQ-------LSADMYSFVAKEIDY--ANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAW  235 (248)
T ss_pred             HHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334555666666666555       4555554 3333343  677999999999999999999999999987654444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1

Probab=99.90  E-value=1.9e-22  Score=189.95  Aligned_cols=201  Identities=12%  Similarity=0.081  Sum_probs=151.5

Q ss_pred             eecHHHHHHHHHHHHHHhhhhch-hhhhHHHHHHhHHHhhc-----CcchhhhhhhhhHHHhhhhccCCCCCCCCchhHH
Q 018756           38 VIDEVEMQRHQQLEKLYRSTRGT-KDFQRDLVKVAEVFTAI-----GYKHIEAGTKLSEDCCRYGAENNQNINENILPKA  111 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~vr~~~~~~~~-----~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a  111 (351)
                      |+||.    -+++||---.||.+ -+..|.++-|.-|-.++     -.|-+|+  .||+||.+||.++|   ++|.||+|
T Consensus        12 ~L~ed----l~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg---~dS~lg~a   82 (257)
T cd07620          12 LLTED----LVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD---AESSIRRV   82 (257)
T ss_pred             hhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC---CcchHHHH
Confidence            45663    45666666666544 44566666554432111     2467888  89999999999999   78999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHH-------
Q 018756          112 AAIYGDAR-KHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVS-------  175 (351)
Q Consensus       112 ~~~~g~a~-~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~-------  175 (351)
                      | ++|.++ ++|++++++++.+|+++|++||+.+++.|+.++        +|+|||||.|-|..-.+......       
T Consensus        83 L-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~  161 (257)
T cd07620          83 L-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEV  161 (257)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccc
Confidence            9 999999 999999999999999999999999999999987        99999999995442110000000       


Q ss_pred             ------HHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhhhhHhHHHHHHHHHHHHHHHHH
Q 018756          176 ------KRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIA  248 (351)
Q Consensus       176 ------rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq~lt~~~L~~lveae~~yh~~~~  248 (351)
                            ...+|+     .-..++++.|+.||+++|..       +.+.|..+ ..+.+.  +++|+.||+++.+||+++.
T Consensus       162 ~~~~~~~~~~K~-----~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~--a~~l~~lveaQ~~YHrqsl  227 (257)
T cd07620         162 GEHQGIRRANKG-----EPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY--ANYFIRLLELQAEYHKNSL  227 (257)
T ss_pred             cccccccccccc-----cccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence                  001121     01248999999999999998       77788763 444444  7899999999999999999


Q ss_pred             HHHHHhHHHhhhhh
Q 018756          249 AILGDVEAEMVSEK  262 (351)
Q Consensus       249 ~IL~~L~~~l~se~  262 (351)
                      +||+.+.+++...-
T Consensus       228 ~~Le~~l~~~~~~~  241 (257)
T cd07620         228 EFLDKNITELKENH  241 (257)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=99.88  E-value=3.5e-21  Score=178.79  Aligned_cols=150  Identities=19%  Similarity=0.252  Sum_probs=125.8

Q ss_pred             cchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh------
Q 018756           79 YKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED------  152 (351)
Q Consensus        79 ~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~------  152 (351)
                      .+.++.  .||+||..||.++|   .+|.||.||+.||+|+++|+.+++.|...++++|++||+..+. +.+++      
T Consensus        49 k~~p~~--~Lg~~M~~~g~~lg---~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKk  122 (215)
T cd07593          49 KCLPVE--ALGLVMINHGEEFP---QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKK  122 (215)
T ss_pred             cCChHH--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            344566  79999999999999   8999999999999999999999999999999999999998874 77764      


Q ss_pred             --hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hhhhhh
Q 018756          153 --ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLT  229 (351)
Q Consensus       153 --~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~-qqq~lt  229 (351)
                        +||||||+.|             -|..|.+... +...++|+.|++||++.++.       +...|..|-+ +..+  
T Consensus       123 Le~rRLdyD~~k-------------sk~~kak~~~-~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~--  179 (215)
T cd07593         123 LESRRLAYDAAL-------------TKSQKAKKED-SRLEEELRRAKAKYEESSED-------VEARMVAIKESEADQ--  179 (215)
T ss_pred             HHHHHHHHHHHH-------------HHHHhccccc-hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH--
Confidence              9999999988             3333332211 22238999999999999998       8888887633 4444  


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018756          230 FQRLVAMVEGEKNYHLRIAAILGDVEAE  257 (351)
Q Consensus       230 ~~~L~~lveae~~yh~~~~~IL~~L~~~  257 (351)
                      +.+|..||+|+++||++|.+||.+|...
T Consensus       180 ~~~L~~lv~AQl~Yh~q~~e~L~~l~~~  207 (215)
T cd07593         180 YRDLTDLLDAELDYHQQSLDVLREVRQS  207 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=99.88  E-value=4e-21  Score=181.46  Aligned_cols=184  Identities=17%  Similarity=0.202  Sum_probs=144.5

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHhHHH-----------hhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHH
Q 018756           47 HQQLEKLYRSTRGTKDFQRDLVKVAEVF-----------TAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY  115 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~-----------~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~  115 (351)
                      .++||+---+||.+-+   +|++.++++           +..+|  +|.  .||+||.+||.++|   .+|.||.||..|
T Consensus        17 ~~~le~r~D~~k~~~~---~i~k~~~~~lqpnp~~r~ek~~kk~--p~~--~Lgq~M~e~~~~lg---~~s~~g~aL~~~   86 (246)
T cd07618          17 LLQIERRLDTVRSVSH---NVHKRLIACFQGQVGTDAEKRHKKL--PLT--ALAQNMQEGSAQLG---EESLIGKMLDTC   86 (246)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHcCCChHHHHHHHhccC--CHH--HHHHHHHHHHhcCC---CCccHHHHHHHH
Confidence            4678888777776543   344444444           23456  477  79999999999999   799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC---
Q 018756          116 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREA---  184 (351)
Q Consensus       116 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~---  184 (351)
                      |+++++|++++.+++..++++|++||++++.++++++        +||||+||.|             +|..+...+   
T Consensus        87 gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K-------------~r~~~a~~~~~~  153 (246)
T cd07618          87 GDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSAR-------------GRYNQAHKSSGT  153 (246)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHH-------------HHHHhccccCcc
Confidence            9999999999999999999999999999999998765        8999999999             343332110   


Q ss_pred             ------C-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          185 ------P-NPENVAKLHAAEARMQELKANMAILGKEAAAALAA-IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       185 ------~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~-ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                            . .+-+.++++.|+.||++++..       +...|.. +....+.  +++|+.||+++++||+++.+||+.+..
T Consensus       154 ~~~~~~~K~~~l~ee~e~a~~k~E~~kD~-------~~~dm~~~l~~e~e~--~~~l~~lv~aQ~eYHr~a~e~Le~~~p  224 (246)
T cd07618         154 NFQAMPSKIDMLKEEMDEAGNKVEQCKDQ-------LAADMYNFASKEGEY--AKFFVLLLEAQADYHRKALAVIEKVLP  224 (246)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0 122235789999999999998       4445554 3333343  789999999999999999999999999


Q ss_pred             Hhhhhh
Q 018756          257 EMVSEK  262 (351)
Q Consensus       257 ~l~se~  262 (351)
                      ++....
T Consensus       225 ~i~~~~  230 (246)
T cd07618         225 EIQAHQ  230 (246)
T ss_pred             HHHHHH
Confidence            987653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=99.85  E-value=1.3e-19  Score=171.26  Aligned_cols=156  Identities=17%  Similarity=0.243  Sum_probs=132.8

Q ss_pred             chhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh-------
Q 018756           80 KHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED-------  152 (351)
Q Consensus        80 ~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~-------  152 (351)
                      +-++.  .||.+|..||.++|   .+|+||.||..||+|++.|+.++.+++..+.++|++||+.++.++++++       
T Consensus        56 k~p~~--~Lg~~M~~~g~~l~---~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkL  130 (244)
T cd07595          56 KLPEY--GLAQSMLESSKELP---DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRL  130 (244)
T ss_pred             cCcHH--HHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566  79999999999999   7899999999999999999999999999999999999999999998875       


Q ss_pred             -hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC-------C-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-H
Q 018756          153 -ARHLAQRYSRMRQEAETQAVEVSKRQQRVREA-------P-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-E  222 (351)
Q Consensus       153 -~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~-------~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e  222 (351)
                       .||||||+.|             +|..|.+.+       . .+...++++.|+.||+++++.       +...|..+ +
T Consensus       131 e~~RLd~D~~k-------------~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~-------~~~~M~~~l~  190 (244)
T cd07595         131 SKLVLDMDSAR-------------SRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDA-------LATDMYEFLA  190 (244)
T ss_pred             hhhhHHHHHHH-------------HHHHhccccccccccccccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence             8999999999             555443311       1 233347999999999999998       88888875 3


Q ss_pred             HHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 018756          223 AQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEK  262 (351)
Q Consensus       223 ~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se~  262 (351)
                      ...+.  ++.|..||+++++||+++.++|+.+...+....
T Consensus       191 ~E~e~--~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~  228 (244)
T cd07595         191 KEAEI--ASYLIDLIEAQREYHRTALSVLEAVLPELQEQI  228 (244)
T ss_pred             ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32444  789999999999999999999999999987543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=99.82  E-value=2.1e-19  Score=169.68  Aligned_cols=217  Identities=18%  Similarity=0.216  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCcc--ceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhh-hhhhh
Q 018756           13 EQVAKQQQAVIKQFSASGYERSDV--MVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEA-GTKLS   89 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~-~~~l~   89 (351)
                      +.|=+-=+.|-+.|..-||--.-+  =.+.+---.-+.+..-|=..| +....|.-++-     ..++.+++=. -.-||
T Consensus        11 k~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~-----~~~~~~~pkTl~~aLs   84 (242)
T cd07600          11 KLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG-----TPAPAKLPKTLNHALS   84 (242)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC-----CCCCCCCCCcHHHHHH
Confidence            455555678889999777731111  112232222355555554444 44556665532     2222223221 22599


Q ss_pred             HHHhhhhccCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhh
Q 018756           90 EDCCRYGAENNQN--INENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQR  159 (351)
Q Consensus        90 e~~~kyg~e~~~~--~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~d  159 (351)
                      .+|..+|.++|.+  .++++||.||+.||+|+.+|++.|..+|..++++|++||++++.++++++        +||||||
T Consensus        85 ~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D  164 (242)
T cd07600          85 RAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLD  164 (242)
T ss_pred             HHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999921  22889999999999999999999999999999999999999999999874        9999999


Q ss_pred             hHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHH
Q 018756          160 YSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVE  238 (351)
Q Consensus       160 y~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lve  238 (351)
                      +.|             .|..|.+... ..+...++++||.+|.+.++.       +...|..+-+.-..  ++.|..||+
T Consensus       165 ~~K-------------~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e~--i~~L~~fv~  222 (242)
T cd07600         165 TAR-------------AELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPEP--LQLLKELVK  222 (242)
T ss_pred             HHH-------------HHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhHH--HHHHHHHHH
Confidence            999             4554442111 233347889999999999987       77777766443333  789999999


Q ss_pred             HHHHHHHHHHHHHHHhHHH
Q 018756          239 GEKNYHLRIAAILGDVEAE  257 (351)
Q Consensus       239 ae~~yh~~~~~IL~~L~~~  257 (351)
                      |++.||++|+++|.+|...
T Consensus       223 AQl~Yh~~~~e~L~~l~~~  241 (242)
T cd07600         223 AQLAYHKTAAELLEELLSV  241 (242)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999998753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]

Probab=99.72  E-value=5e-16  Score=146.06  Aligned_cols=279  Identities=18%  Similarity=0.217  Sum_probs=184.8

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcC-cchhh----------------hhhhhhHHHhhhhccCCCCCCCCchhH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIG-YKHIE----------------AGTKLSEDCCRYGAENNQNINENILPK  110 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~-~~q~E----------------~~~~l~e~~~kyg~e~~~~~~~~~~~~  110 (351)
                      -++|+|..-.-..|..-+.|.+..|++..+- .--+|                -+..|+..|.--|.|+|   .+.+.|.
T Consensus        37 aHfENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG---ptTpYG~  113 (375)
T KOG3725|consen   37 AHFENLLQRADKTKDWTEKILSQTEVLLQPNPTARMEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG---PTTPYGS  113 (375)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhhheecCCCcchhHHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC---CCCcchH
Confidence            3488998877778889999999999986542 11111                12358999999999999   7889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHH-HHHHHhh
Q 018756          111 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEV-SKRQQRV  181 (351)
Q Consensus       111 a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~-~rrq~k~  181 (351)
                      ||+.+|++.+++...--.|...-..|||-|||++..||.+-+        .+|||-|--|-|-.- +.++|. ..|-.|.
T Consensus       114 aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcKsRLKK-AKaae~q~~rN~~~  192 (375)
T KOG3725|consen  114 ALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACKSRLKK-AKAAELQTVRNSKT  192 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHHHHHHH-hhhhhhhccccccc
Confidence            999999999999999999999999999999999999998754        667776644422211 111111 0111111


Q ss_pred             hcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          182 REAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       182 re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      .-+- +.....+|+.|.+.|+.--+. ..|   +-......-+.  +  +..|..||+++.+|+.+|.+.+-+|+.++..
T Consensus       193 s~~~~ie~aEqelRvaQ~EFDrQaEi-TrL---LLEGIsstH~n--h--LrCL~dFVeaQmtyYAQcyq~MlDLQkqLg~  264 (375)
T KOG3725|consen  193 SGGFTIEQAEQELRVAQAEFDRQAEI-TRL---LLEGISSTHNN--H--LRCLRDFVEAQMTYYAQCYQLMLDLQKQLGG  264 (375)
T ss_pred             cCcchHhHHHHHHHHHHHHHhHHHHH-HHH---HHHhhhhhhhh--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            0000 011123444444444332221 111   11111111111  1  6678999999999999999999999998765


Q ss_pred             hhhccC-----CCCCCCCCCC----------------CCccc---------cceEEEEecCCCCCCCCCccccCCCEEEE
Q 018756          261 EKQRKE-----SAPPVIPSEN----------------SSQKA---------VYFLAEAIHPFTAASEKELSLGVGDYVVV  310 (351)
Q Consensus       261 e~~r~e-----sa~~~~~~~s----------------~~~~~---------~~~~~~ALydf~a~~~~ELsf~~GD~I~V  310 (351)
                      -.....     .++.|.|+..                ..+|.         ....++++|||++..+.||++-..++|.|
T Consensus       265 fps~~~s~~~~~s~sp~ps~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~ElslladeiitV  344 (375)
T KOG3725|consen  265 FPSFRGSSAILVSNSPDPSNGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQELSLLADEIITV  344 (375)
T ss_pred             CcccccccccccCCCCCCCCCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhhhhhhhcceEEE
Confidence            321111     1111111110                00111         13368999999999999999999999998


Q ss_pred             eee--CCCCeeEEEECCeeeEecCCceeec
Q 018756          311 RKV--SPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       311 l~~--~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      .+.  .|.+|..|+.+++.|-+|..|++.+
T Consensus       345 yslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  345 YSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             EecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            764  4778999999999999999999754

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=6.2e-15  Score=148.18  Aligned_cols=199  Identities=19%  Similarity=0.273  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhh
Q 018756            9 SKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAG   85 (351)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~   85 (351)
                      .-+...+.+-++-|+-.||-|     |-.+ ||. +.  |...++...-..++++|||   |..+|.|++....+-.|.+
T Consensus         4 k~~kKa~sRa~ekvlqk~g~~-----~~Tk-D~~-FE--~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l   74 (460)
T KOG3771|consen    4 KGVQKALNRAPEKVLQKLGKV-----DETK-DEQ-FE--QEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESL   74 (460)
T ss_pred             hhhHHHhccccHHHHhhcCCc-----cccc-chH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667888899999999821     2222 432 22  2244555556789999999   9999999998876666554


Q ss_pred             hhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhh
Q 018756           86 TKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQR  159 (351)
Q Consensus        86 ~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~d  159 (351)
                      ..+      |+.+|.    |..-.      -..+..++..|.+|+..|.+++++||..+...+|      +.++|+|. |
T Consensus        75 ~ei------y~p~~~----g~~~l------~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~-D  137 (460)
T KOG3771|consen   75 QEI------YEPDWP----GRDYL------QAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLV-D  137 (460)
T ss_pred             HHh------cCcccc----cHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhh-h
Confidence            333      888887    44322      2345678889999999999999999999998887      35799999 9


Q ss_pred             hHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH--hHHHHHH
Q 018756          160 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMV  237 (351)
Q Consensus       160 y~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~--~~L~~lv  237 (351)
                      ||++||.++......     + +    .  ..|+..||+.|+..+..+..|+.++...|+.+.+  .|+.+  ..+.+++
T Consensus       138 yD~~r~~~~kvq~~k-----~-k----d--~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~--sRv~f~vp~Fqsl~  203 (460)
T KOG3771|consen  138 YDSARHSFEKLQAKK-----K-K----D--EAKLAKAEEELEKAQQVFEELNNELLEELPALYS--SRVGFFVPTFQSLF  203 (460)
T ss_pred             hHHHHHHHHHHHHhc-----C-C----C--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhcchHHHHH
Confidence            999999998776652     1 1    1  3678889999999999999999999999999988  56553  5677788


Q ss_pred             HHHHHHHHHH
Q 018756          238 EGEKNYHLRI  247 (351)
Q Consensus       238 eae~~yh~~~  247 (351)
                      ..+..||+..
T Consensus       204 ~~q~vf~~Em  213 (460)
T KOG3771|consen  204 NLQLVFHKEM  213 (460)
T ss_pred             HHHHHHHHHH
Confidence            8899998877

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=99.52  E-value=4.1e-12  Score=111.01  Aligned_cols=187  Identities=20%  Similarity=0.316  Sum_probs=149.8

Q ss_pred             hhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 018756           61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDP  140 (351)
Q Consensus        61 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~P  140 (351)
                      ++.=+.|++.+++++..+.........|+++|.++|...+ ...+.+++.++..+|++.+.++..++.+...+...|++|
T Consensus         6 ~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~p   84 (194)
T cd07307           6 EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELP-DLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEP   84 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666666666666666666789999999999987 222224999999999999999999999999999999999


Q ss_pred             HHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018756          141 LRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA  220 (351)
Q Consensus       141 L~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~  220 (351)
                      |+.+..++.... +..-.+|++.|.++++....+.+-+.+.+      ...++..++.++++.+..+..+..++...|..
T Consensus        85 L~~~~~~~~~~~-~~~~k~~~~~~~~yd~~~~k~~~~~~~~~------~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~  157 (194)
T cd07307          85 LKEYLKKDLKEI-KKRRKKLDKARLDYDAAREKLKKLRKKKK------DSSKLAEAEEELQEAKEKYEELREELIEDLNK  157 (194)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998776644 66666888888888888877754433321      13688889999999999988888889999998


Q ss_pred             HHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756          221 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       221 ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~  255 (351)
                      +...........|..|++++..||.++.++++++.
T Consensus       158 ~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~  192 (194)
T cd07307         158 LEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL  192 (194)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            87755555578899999999999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.51  E-value=6.7e-12  Score=113.33  Aligned_cols=223  Identities=18%  Similarity=0.317  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHh---HHHhhcCcchhhhhhhh
Q 018756           12 KEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVA---EVFTAIGYKHIEAGTKL   88 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~---~~~~~~~~~q~E~~~~l   88 (351)
                      .-.+.|-.|.|.-.+|++     +...+|+.=-....++..+..   .-+++++++-+-+   +.+..++.-.......|
T Consensus         2 ~K~~~R~~q~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   73 (229)
T PF03114_consen    2 KKKINRAKQRVKQKLGKS-----EKTEIDEEFEELEEKFKQLEE---SIKKLQKSLKKYLDSIKKLSASQKNMKSPFEEL   73 (229)
T ss_dssp             HHHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHH
Confidence            345677778888888833     233357642223344444433   4456666644433   34444332111222379


Q ss_pred             hHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHH
Q 018756           89 SEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAE  168 (351)
Q Consensus        89 ~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E  168 (351)
                      |++|..+|.+.+   .++.||.++..||+++..|+..+..+...+.+.|++||+.+. ...++...... .+++.+.+++
T Consensus        74 ~~~l~~~~~~~~---~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~k-kr~~~~ldyd  148 (229)
T PF03114_consen   74 ADALIELGSEFS---DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIK-KREKKRLDYD  148 (229)
T ss_dssp             HHHHHHHHHCTS---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHhcccc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHH
Confidence            999999999987   566799999999999999999999999999999999999999 66655432222 3344444555


Q ss_pred             HHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHH
Q 018756          169 TQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRI  247 (351)
Q Consensus       169 ~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~  247 (351)
                      .....+++    .++.. .+....+++.|+.+|+.+...       +...|+.+......+....|..|++++..||+++
T Consensus       149 ~~~~k~~k----~~~~~~~~~~~~~l~~a~~~f~~~~~~-------l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~  217 (229)
T PF03114_consen  149 SARSKLEK----LRKKKSKSSKEEKLEEAKEEFEALNEE-------LKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQL  217 (229)
T ss_dssp             HHHHHHHH----CHTTSSBTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHhhhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444432    22111 121135677777777766665       6677777655333333378999999999999999


Q ss_pred             HHHHHHhHHHh
Q 018756          248 AAILGDVEAEM  258 (351)
Q Consensus       248 ~~IL~~L~~~l  258 (351)
                      .++|.+|...+
T Consensus       218 ~~~l~~l~~~l  228 (229)
T PF03114_consen  218 YQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>smart00721 BAR BAR domain

Probab=99.49  E-value=7.4e-12  Score=115.56  Aligned_cols=216  Identities=19%  Similarity=0.235  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhh-chhhhhHHHHHHh------HHHhhcCcchhhhhh
Q 018756           14 QVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTR-GTKDFQRDLVKVA------EVFTAIGYKHIEAGT   86 (351)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~vr~~------~~~~~~~~~q~E~~~   86 (351)
                      ++.|--|.|.-.+|++     +-..+||.=    ..||+-+..++ ..++++|++-..+      ++...+...-.+   
T Consensus         5 ~~~R~~q~~~ek~G~~-----e~T~~D~~f----~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~---   72 (239)
T smart00721        5 QFNRAKQKVGEKVGKA-----EKTKLDEDF----EELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSK---   72 (239)
T ss_pred             hhHHHHHHHHHHhCCC-----CcCcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHH---
Confidence            4556666788888833     344446653    23444444433 2345555543333      333333222223   


Q ss_pred             hhhHHHhh--hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhh
Q 018756           87 KLSEDCCR--YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHL  156 (351)
Q Consensus        87 ~l~e~~~k--yg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L  156 (351)
                      .+++.+.-  +|.+.+   .++.+|.++..+|+++..++..+..| ..+..+|+.|+.+....+..+.        .++|
T Consensus        73 ~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~l  148 (239)
T smart00721       73 SLGEVYEGGDDGEGLG---ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLL  148 (239)
T ss_pred             HHHHHhcCCCCccccC---chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHH
Confidence            35555554  455555   67789999999999999999999999 9999999999999998887653        3344


Q ss_pred             hhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHH
Q 018756          157 AQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAM  236 (351)
Q Consensus       157 ~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~l  236 (351)
                        |||+.|+.++.....     .+     .+.. .||..|+++|+..++.+..++.++...|+.+.+....+-+..|..|
T Consensus       149 --DyD~~~~kl~~~~~~-----~~-----~~~~-~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~  215 (239)
T smart00721      149 --DYDSARHKLKKAKKS-----KE-----KKKD-EKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQAL  215 (239)
T ss_pred             --HHHHHHHHHHHHHHh-----cc-----CChh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence              455555555433211     11     1211 2777778888877777777777899999987663333336789999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHh
Q 018756          237 VEGEKNYHLRIAAILGDVEAEM  258 (351)
Q Consensus       237 veae~~yh~~~~~IL~~L~~~l  258 (351)
                      +.++..||.++..+|.+|...+
T Consensus       216 ~~aq~~y~~~~~~~l~~l~~~l  237 (239)
T smart00721      216 IEAQLNFHRESYKLLQQLQQQL  237 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988765

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.47  E-value=7.7e-14  Score=100.82  Aligned_cols=49  Identities=37%  Similarity=0.626  Sum_probs=45.3

Q ss_pred             EecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCcee
Q 018756          288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE  336 (351)
Q Consensus       288 ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe  336 (351)
                      |+|+|.+..++||+|++||+|.|+...++|||.|+.+|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            6899999999999999999999999999999999999999999999996

...

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=99.44  E-value=2e-11  Score=113.46  Aligned_cols=172  Identities=20%  Similarity=0.252  Sum_probs=141.1

Q ss_pred             chhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018756           59 GTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSS  135 (351)
Q Consensus        59 ~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~  135 (351)
                      +++.+|||   |..+|.|+..++..-.|....|      |+..|.    |.      -++..++..++..|.+|...+.+
T Consensus        27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l------Y~p~~~----~~------~~~~~v~e~~d~~~~~l~~~l~~   90 (211)
T cd07588          27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKEL------YEPDWP----GR------EHLASIFEQLDLLWNDLEEKLSD   90 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc----cH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899998   8999999998888877776666      888875    21      14466788999999999999999


Q ss_pred             hhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 018756          136 QVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI  209 (351)
Q Consensus       136 ~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~  209 (351)
                      .|++||..++.-.|-      +++|+|. |||+.|+.++.....-.      +     + ..||.+||++|+..+..+..
T Consensus        91 ~Vl~Pl~~~~s~f~~i~k~I~KR~~Kll-DYDr~r~~~~kL~~K~~------k-----d-e~KL~kae~el~~Ak~~Ye~  157 (211)
T cd07588          91 QVLGPLTAYQSQFPEVKKRIAKRGRKLV-DYDSARHNLEALKAKKK------V-----D-DQKLTKAEEELQQAKKVYEE  157 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHH-hHHHHHHHHHHHHhccc------c-----c-HhhHHHHHHHHHHHHHHHHH
Confidence            999999999988763      5699999 99999999888755411      1     2 47999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756          210 LGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       210 l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~  259 (351)
                      ++.++...|+.+.+-.-..-..-+.+|+.++..||.++..+..+|...|.
T Consensus       158 lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~  207 (211)
T cd07588         158 LNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD  207 (211)
T ss_pred             HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998877322222356888999999999999999999887664

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2

Probab=99.40  E-value=3.4e-11  Score=111.72  Aligned_cols=178  Identities=13%  Similarity=0.198  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 018756           45 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH  121 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~  121 (351)
                      .+.+.||      .+++.+|||   |..+|.|+......-.|.+..+      ||..|+   ..+.+       ......
T Consensus        19 ~rf~~le------~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~------Y~~~~~---~~~~~-------~~v~e~   76 (211)
T cd07612          19 MNLNMQQ------SDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDI------YEPDWD---GHEDL-------GAIVEG   76 (211)
T ss_pred             HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcC---cccHH-------HHHHhc
Confidence            4555555      368999999   9999999999888877776665      999998   23333       445566


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 018756          122 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA  195 (351)
Q Consensus       122 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~  195 (351)
                      ++..|++++..+.+.||+||..++.-+|-      +++|+|. |||+.|+.++.....      +.++      ..||..
T Consensus        77 ~d~~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~Kll-DYD~~R~~~~kl~~k------~~kD------~~KL~k  143 (211)
T cd07612          77 EDLLWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLV-DYDSARHHLEALQNA------KKKD------DAKIAK  143 (211)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhc------cccc------HHHHHH
Confidence            77899999999999999999999988873      5799999 999999998777642      1111      479999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756          196 AEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       196 Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~  259 (351)
                      ||+.|+..+..+..++.++...|+.+.+  .|+.  ...+.+++..+..||.++..+...|..-|.
T Consensus       144 Ae~el~~Ak~~ye~lN~~L~~ELP~L~~--~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~  207 (211)
T cd07612         144 AEEEFNRAQVVFEDINRELREELPILYD--SRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMK  207 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887  5554  367889999999999999999888877653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.34  E-value=2.1e-12  Score=94.97  Aligned_cols=54  Identities=39%  Similarity=0.672  Sum_probs=48.6

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEe-eeCCCCeeEEEECCeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVR-KVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl-~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      .|+|++||.+..+++|+|.+||+|.|+ ...++|||.|+.+|+.||||.+||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            478999999999999999999999999 888889999999999999999999864

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II

Probab=99.34  E-value=1.6e-10  Score=107.31  Aligned_cols=178  Identities=16%  Similarity=0.238  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 018756           45 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH  121 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~  121 (351)
                      .+.+.||+      +++.+|||   |..+|.|+.+....-.|.+..+      ||..|+ .  .+..    ...|   ..
T Consensus        19 rrf~~lE~------~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~------Y~p~~~-g--~~~~----~~~~---~~   76 (211)
T cd07611          19 QNFKRQET------EGTRLQRELRAYLAAIKGMQEASKKLTESLHEV------YEPDWY-G--RDDV----KTIG---EK   76 (211)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc-c--cchH----HHHH---hh
Confidence            45566664      67899999   9999999999988888887777      999984 1  1211    1223   55


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 018756          122 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA  195 (351)
Q Consensus       122 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~  195 (351)
                      +..+|.+|+..+..++++|+..++.-+|-      +++|.|. |||+.|+.++.+...      +.+     | ..||..
T Consensus        77 ~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKll-DYD~~r~~~~kL~~k------~~k-----D-e~KL~k  143 (211)
T cd07611          77 CDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLV-DYDSARHHLEALQTS------KRK-----D-EGRIAK  143 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhcc------ccc-----c-HHHHHH
Confidence            66799999999999999999999988773      5699999 999999998777643      121     2 589999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756          196 AEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       196 Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~  259 (351)
                      ||+-|+..+..+..++..+...|+.+.+  .|+.  ...+.+|+..+..||.++..+-..|..-|.
T Consensus       144 Ae~el~~Ak~~ye~lN~~Lk~ELP~L~~--~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~  207 (211)
T cd07611         144 AEEEFQKAQKVFEEFNVDLQEELPSLWS--RRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT  207 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887  5544  367889999999999999998777776553

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=8.2e-10  Score=116.38  Aligned_cols=60  Identities=38%  Similarity=0.711  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEee--eCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~--~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|.|++.+.+|++|.+||+|.|..  ...+||..|+.+|+.||||.|||+.+...+
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e  754 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVE  754 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCC
Confidence            557999999999999999999999999874  458899999999999999999999875443

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

Probab=99.25  E-value=9.7e-10  Score=103.16  Aligned_cols=185  Identities=18%  Similarity=0.284  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 018756           45 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH  121 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~  121 (351)
                      ++.+.||+      +++.+|||   |+.+|.|+..+..|-.|.   |+++   |+.+.     +..+..+.-.|-.++..
T Consensus        18 ~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~---l~~~---~~~~~-----~~~~~~~~e~y~~~~~~   80 (225)
T cd07590          18 QKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQD---LASG---PLCED-----NDELRNLVEALDSVTTQ   80 (225)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHhc---ccCCC-----ChHHHHHHHHHHHHHHH
Confidence            45555554      57899999   888888888777555555   4442   54332     23466677788899999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 018756          122 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA  195 (351)
Q Consensus       122 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~  195 (351)
                      |.+....++..+...|++||..+..-+|.      +++|.|. |||+.|+.++.....       .+.+  + +..||.+
T Consensus        81 l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~-DYD~~r~~~~kl~~K-------~~k~--~-~~~KL~k  149 (225)
T cd07590          81 LDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQ-EYERLQAKVEKLAEK-------EKTG--P-NLAKLEQ  149 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHhC-------ccCC--h-hHHHHHH
Confidence            99999999999999999999999998875      5689997 999999998766532       1111  1 1389999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756          196 AEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       196 Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~  259 (351)
                      ||+.|+..+..+..++.++..-|+.+.+  -|++  ..-+.+|+-.+..||.....++.+|...+-
T Consensus       150 ae~el~~Ak~~ye~~N~~L~~ELP~l~~--~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d  213 (225)
T cd07590         150 AEKALAAARADFEKQNIKLLEELPKFYN--GRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD  213 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH--HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999998877  3333  356788999999999999999999988664

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=99.21  E-value=5.5e-12  Score=127.36  Aligned_cols=56  Identities=36%  Similarity=0.734  Sum_probs=53.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ..++|-|.|.+.+.+||+|.+||+|+|+...+.|||+|+++|++||||+|||.++.
T Consensus        18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK   73 (661)
T ss_pred             eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence            45899999999999999999999999999999999999999999999999998864

>smart00326 SH3 Src homology 3 domains

Probab=99.12  E-value=1.5e-10  Score=82.88  Aligned_cols=55  Identities=38%  Similarity=0.563  Sum_probs=50.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC-CeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~-Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|+|.+..+++|+|.+||.|.|+...++|||.+++. |+.||||.+|++.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            45789999999999999999999999998888999999986 99999999999753

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=99.09  E-value=4.1e-11  Score=118.65  Aligned_cols=57  Identities=33%  Similarity=0.445  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ...++|||||++..++||+|+.||+|+|+...+++||.|++.+..|+||+|||....
T Consensus       215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            346899999999999999999999999999999999999999999999999998754

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=99.09  E-value=1.8e-10  Score=109.61  Aligned_cols=98  Identities=29%  Similarity=0.444  Sum_probs=70.4

Q ss_pred             HHHHHHHHhHHHhhhhhhccCCCCCC--CCCCCC-Cccc----cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCe
Q 018756          246 RIAAILGDVEAEMVSEKQRKESAPPV--IPSENS-SQKA----VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGW  318 (351)
Q Consensus       246 ~~~~IL~~L~~~l~se~~r~esa~~~--~~~~s~-~~~~----~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gW  318 (351)
                      .-..|...|.+.+...-.|..+++..  +|.... .+|.    ....+.+-|.|.++.++||++.+|+.|.|.++..+||
T Consensus        63 ~~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGW  142 (379)
T KOG4226|consen   63 KKGSIVKNLKDTLGLKTRRKTSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGW  142 (379)
T ss_pred             hhhHHHHhhhhccccccccCCCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcc
Confidence            34567788887776633333333322  111111 1111    1123788899999999999999999999999999999


Q ss_pred             eEEEECCeeeEecCCceeeccCCCC
Q 018756          319 SEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       319 weG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      |.|..+|..||||+|||++....+.
T Consensus       143 WrG~~ng~VGWFPSNYv~E~~ds~~  167 (379)
T KOG4226|consen  143 WRGSYNGQVGWFPSNYVTEEVDSAA  167 (379)
T ss_pred             eecccCCeeccccccceehhccccc
Confidence            9999999999999999998766543

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.08  E-value=1.9e-10  Score=82.22  Aligned_cols=46  Identities=39%  Similarity=0.666  Sum_probs=42.2

Q ss_pred             EEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecC
Q 018756          287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPS  332 (351)
Q Consensus       287 ~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPs  332 (351)
                      +|+|+|.+..++||+|.+||.|.|++..+.+||.|...  |+.||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            58999999999999999999999999999999999973  79999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.05  E-value=4.1e-10  Score=79.74  Aligned_cols=51  Identities=41%  Similarity=0.624  Sum_probs=47.5

Q ss_pred             EEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECC-eeeEecCCcee
Q 018756          286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-KAGWFPSANVE  336 (351)
Q Consensus       286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~G-k~G~FPsnYVe  336 (351)
                      ++++|+|.+..+++|+|.+||.|.|++..++|||.+...+ +.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6899999999999999999999999998889999999865 99999999986

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.1e-10  Score=122.74  Aligned_cols=54  Identities=35%  Similarity=0.563  Sum_probs=51.1

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      .+.++|||.+++++||+|++||+|.|+.+.++.||.|+++|++|+||+|||...
T Consensus      1055 qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred             eeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence            467999999999999999999999999999999999999999999999999654

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=99.02  E-value=4.2e-08  Score=91.63  Aligned_cols=184  Identities=16%  Similarity=0.226  Sum_probs=130.3

Q ss_pred             HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756           67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus        67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      +++++.+++.+|.-.++.-..+++...+.|.... ..++...|.++..|+.+.+.|++.++.|-.++...++.||.++..
T Consensus        21 l~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~-~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k   99 (215)
T cd07604          21 LKKAVKAIHNSGLAHVENELQFAEALEKLGSKAL-SREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLK   99 (215)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888889999999998764 223335899999999999999999999999999999999999999


Q ss_pred             cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHh-hhcCC--Cc-----chHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018756          147 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR-VREAP--NP-----ENVAKLHAAEARMQELKANMAILGKEAAAAL  218 (351)
Q Consensus       147 ~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k-~re~~--~~-----~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am  218 (351)
                      +|+...-+-+...|||-+.++|.....+++...+ .++..  .+     +..+.|..+...|+...=       +-...+
T Consensus       100 ~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~-------~yv~~l  172 (215)
T cd07604         100 GDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMC-------EYLIKV  172 (215)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            9886543367778889888887776655443222 11110  11     223444444444443321       223334


Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756          219 AAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  258 (351)
Q Consensus       219 ~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l  258 (351)
                      +.++.....=-++.|+.+++|+.+|+++..++++++.+-+
T Consensus       173 ~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~  212 (215)
T cd07604         173 NEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4454432222268899999999999999999999987644

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=99.01  E-value=2.7e-10  Score=119.46  Aligned_cols=54  Identities=33%  Similarity=0.603  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      +.|.|+|||.+++.+||+|++||+|.++...+.|||.|..+|+.||||.+||++
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            679999999999999999999999999999999999999999999999999975

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=98.99  E-value=5.3e-10  Score=111.91  Aligned_cols=56  Identities=36%  Similarity=0.587  Sum_probs=54.3

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      .++|+|+|.++...||.|.+||+|.|+.++|.+|++|+.+|+.|+||++||+.+.+
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence            48999999999999999999999999999999999999999999999999999887

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=98.91  E-value=2.2e-09  Score=110.56  Aligned_cols=60  Identities=40%  Similarity=0.600  Sum_probs=51.7

Q ss_pred             cccceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeecc
Q 018756          280 KAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       280 ~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      +.....+++-|||-+.+-.||||+.||+|.++...  +.|||.|+.+|+.||||++||++-.
T Consensus       802 ~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  802 PKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             cceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence            33455688889999999999999999999998654  4699999999999999999998743

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1

Probab=98.89  E-value=2.8e-07  Score=85.24  Aligned_cols=179  Identities=12%  Similarity=0.183  Sum_probs=130.2

Q ss_pred             HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756           66 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  145 (351)
Q Consensus        66 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  145 (351)
                      .+|+.+.+++.+|.-..-.-..++..+..+|.+..   ++...|.++..|+.+++.|++.+..|..++..-+++||..++
T Consensus        20 kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~---~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~   96 (200)
T cd07639          20 KLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP---KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLV   96 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666666677777888888543   666799999999999999999999999999999999999999


Q ss_pred             hcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 018756          146 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ  225 (351)
Q Consensus       146 ~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qq  225 (351)
                      ..|+.. .+-....|||...++++-...-.+ ..|.+    +   .+++.|.+-|.-.++..-...=+....++.++..-
T Consensus        97 k~dl~~-vKe~kK~FdK~s~~~d~al~K~~~-~~k~k----~---~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kK  167 (200)
T cd07639          97 KEDLRG-FRDARKEFERGAESLEAALQHNAE-TPRRK----A---QEVEEAAAALLGARATFRDRALDYALQINVIEDKK  167 (200)
T ss_pred             HhhhHH-HHHHhhhHhhcchhHHHHHHHHhh-ccccc----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988864 466777888988888765444322 11211    2   47788888888888875444333444444444411


Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          226 HRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       226 q~lt~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      .---+..|+++++|..+|+.+..+++++|.+
T Consensus       168 kfefle~ll~~m~a~~tfF~qG~ell~~l~~  198 (200)
T cd07639         168 KFDILEFMLQLMEAQASFFQQGHEALSALHQ  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1111578999999999999999999999864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

Probab=98.87  E-value=2.5e-07  Score=85.73  Aligned_cols=183  Identities=15%  Similarity=0.199  Sum_probs=134.2

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCch----hHHHHHHHHHHHHH
Q 018756           47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL----PKAAAIYGDARKHV  122 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~----~~a~~~~g~a~~~~  122 (351)
                      ...|+|||.+.++--.-++++..+..              .++..+..||.. +   +|...    |.++..|+.+++.|
T Consensus        14 ~~~~~Kl~K~~~~~~~a~~~~~~a~~--------------~Fa~~L~~f~~~-~---dD~~~~a~gg~~l~kF~~~l~ei   75 (202)
T cd07606          14 RDRSLKLYKGCRKYRDALGEAYDGDS--------------AFAESLEEFGGG-H---DDPISVAVGGPVMTKFTSALREI   75 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhcCC-C---CChHHHhccchHHHHHHHHHHHH
Confidence            35677887777665555555554444              445556666642 3   44333    24799999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 018756          123 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE  202 (351)
Q Consensus       123 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~e  202 (351)
                      ...++.|...+..-+++||..++..|+.+. +-+...|||-+.++++-.....+-..+.|    +   .+++.|++.+.-
T Consensus        76 ~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~yd~al~K~~~l~k~~k----~---~~~~ea~~~l~~  147 (202)
T cd07606          76 GSYKEVLRSQVEHMLNDRLAQFADTDLQEV-KDARRRFDKASLDYEQARSKFLSLTKDAK----P---EILAAAEEDLGT  147 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCc----h---HHHHHHHHHHHH
Confidence            999999999999999999999999998874 67777899988888877666543222222    2   467788888888


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756          203 LKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       203 lk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~  255 (351)
                      .++..-...-+...+++.++..-.---+..|+.+++|+.+|+++..+++.+|.
T Consensus       148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~  200 (202)
T cd07606         148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE  200 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88887666666666666665522112267899999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=98.86  E-value=3.7e-07  Score=84.42  Aligned_cols=180  Identities=9%  Similarity=0.164  Sum_probs=135.8

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  144 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  144 (351)
                      +.+|+++.+++.+|.-....-..++.....+|.+..   ++...+.++..||.+++.|...+..|...+...+++||+++
T Consensus        19 ~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~---~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F   95 (200)
T cd07603          19 EKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFR---DDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNF   95 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457778888888887777777788888888888743   67788999999999999999999999999999999999999


Q ss_pred             hhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 018756          145 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ  224 (351)
Q Consensus       145 ~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~q  224 (351)
                      +.+|+... +-+...|||...++++-..... ...|.|    |   ..++.|..-+...+.......-+....++.++..
T Consensus        96 ~k~dL~~v-KE~kk~Fdk~s~~yd~al~k~~-~~~K~K----~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~k  166 (200)
T cd07603          96 VKEDIKKV-KESKKHFEKISDDLDNALVKNA-QAPRSK----P---QEAEEATNILTATRSCFRHTALDYVLQINVLQAK  166 (200)
T ss_pred             HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHh-ccCCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998754 5566677777777765554421 112222    2   4777788888888888655555555555555542


Q ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          225 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       225 qq~lt~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      -.---++.|+++++|+.+|+.+..++++++.+
T Consensus       167 Kk~e~le~ll~~~~A~~tff~qG~el~~dl~p  198 (200)
T cd07603         167 KRHEILSTLLSYMHAQFTFFHQGYDLLEDLEP  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence            22122688999999999999999999988753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.85  E-value=2.6e-07  Score=91.29  Aligned_cols=55  Identities=25%  Similarity=0.477  Sum_probs=49.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEEC-CeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECK-GKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~-Gk~G~FPsnYVe~i  338 (351)
                      ..++|||||.+...+||+|+.||.|..+... .-||+.|+++ |+.|+||+|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            4689999999999999999999999887554 4599999986 99999999999865

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins

Probab=98.83  E-value=6.2e-07  Score=84.20  Aligned_cols=177  Identities=15%  Similarity=0.212  Sum_probs=127.2

Q ss_pred             hchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 018756           58 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVE-KEQEDFNRLL  133 (351)
Q Consensus        58 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~-~~~~~l~~~~  133 (351)
                      .+++.+||+   +..++.++..+...-.|....+      |+..++   .+  .-.+.-.|..++..|. +....++..+
T Consensus        25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~l------Y~p~~~---~~--~~~~~~~y~~~v~~l~~~~~~el~~~~   93 (224)
T cd07591          25 KASTKLQKEAKGYLDSLRALTSSQARIAETISSF------YGDAGD---KD--GAMLSQEYKQAVEELDAETVKELDGPY   93 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCC---cc--HhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            467889998   5566666655554444443333      888886   21  1123345666666665 4566677778


Q ss_pred             HhhhhhHHHHhhhcCh------hhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756          134 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  207 (351)
Q Consensus       134 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m  207 (351)
                      .+.|++|+..+..-.|      ++++++|. |||+.|+.++.....      +.+     + ..||..||++|++.+..+
T Consensus        94 ~~~V~~Pl~~~~~~~~~i~k~IkKR~~Kll-DYD~~~~k~~kl~~K------~~k-----d-~~kL~kae~el~~a~~~Y  160 (224)
T cd07591          94 RQTVLDPIGRFNSYFPEINEAIKKRNHKLL-DYDAARAKVRKLIDK------PSE-----D-PTKLPRAEKELDEAKEVY  160 (224)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhhHh-hHHHHHHHHHHHHhc------ccC-----C-HHHHHHHHHHHHHHHHHH
Confidence            9999999999987665      36789998 999999998865532      111     1 378999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756          208 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  258 (351)
Q Consensus       208 ~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l  258 (351)
                      ..++..+..-|+.+-+-.-.+...-+.+|+..+..||.+....|..+....
T Consensus       161 e~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~  211 (224)
T cd07591         161 ETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYL  211 (224)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999876633333345677899999999999988888876644

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.82  E-value=8.6e-10  Score=110.38  Aligned_cols=59  Identities=27%  Similarity=0.482  Sum_probs=55.0

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ....|.+.|.|.+++++||.|+.||+|.|+....+|||.|.++|+.|+||+|||..+..
T Consensus        99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~  157 (627)
T KOG4348|consen   99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT  157 (627)
T ss_pred             cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence            34579999999999999999999999999999999999999999999999999998754

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.80  E-value=2.5e-09  Score=107.11  Aligned_cols=56  Identities=32%  Similarity=0.523  Sum_probs=51.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeee--CCCCeeEEEECCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~--~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      .+|+++|.|++++++||+|++||+|.++.+  ++-|||+|+++|+.|.||-|||+.++
T Consensus       262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence            469999999999999999999999987754  36699999999999999999999876

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=98.77  E-value=9.8e-07  Score=81.94  Aligned_cols=188  Identities=11%  Similarity=0.128  Sum_probs=128.4

Q ss_pred             hhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018756           61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQV  137 (351)
Q Consensus        61 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~~~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~  137 (351)
                      +.|=++||+.+.+++.+|.--.=+...++.+...+|.+...  .+++. ..+.++..|+..++.|++.+..|-.++...+
T Consensus        15 ~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l   94 (207)
T cd07634          15 NKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVL   94 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777665555555677777777754320  01221 5899999999999999999999999999999


Q ss_pred             hhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018756          138 LDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAA  217 (351)
Q Consensus       138 ~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~a  217 (351)
                      +.||..+...|+.. .+-....|||-...+++....-.. ..+.+    .+  ..++.|++-|+-.++..-...=+....
T Consensus        95 ~~pL~~f~k~dl~~-vKe~kK~FDK~se~y~~aleK~l~-l~~~k----k~--~~~~ea~~~l~~~R~~F~~~~ldYv~~  166 (207)
T cd07634          95 IAPLEKFRKEQIGA-AKDGKKKFDKESEKYYSILEKHLN-LSAKK----KE--SHLQRADTQIDREHQNFYEASLEYVFK  166 (207)
T ss_pred             HHHHHHHHHHHHHH-HHHHccchhHHHhHHHHHHHHHHh-ccccC----Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988864 456667888887777664433211 11111    11  477778888888887743332233333


Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          218 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       218 m~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      ++.|+....---++.|+++++|..+|+.+..++++++.+
T Consensus       167 i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~p  205 (207)
T cd07634         167 IQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAP  205 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence            334443111111578999999999999999999998753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins

Probab=98.69  E-value=2.6e-06  Score=79.25  Aligned_cols=183  Identities=12%  Similarity=0.182  Sum_probs=124.7

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINE-NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPL  141 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~~-~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL  141 (351)
                      +.+|+...+++.+|.-..=+-..++++..-|+-+-..  .++| -..+.+|-.||.++..|++.++-|...+...++.||
T Consensus        19 kkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL   98 (207)
T cd07602          19 KELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPL   98 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555444444556666666644210  0122 247899999999999999999999999999999999


Q ss_pred             HHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018756          142 RAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI  221 (351)
Q Consensus       142 ~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v  221 (351)
                      ..+...|+.+ .+-....|||-..++++-.....+ ..|.|.    +  ..++.|++-+.-.++..-...-+...+++.|
T Consensus        99 ~~F~k~dl~~-~ke~kk~FdK~se~~~~al~k~~~-lsk~kk----~--~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~v  170 (207)
T cd07602          99 EKFRKEQIGG-AKEEKKKFDKETEKFCSSLEKHLN-LSTKKK----E--NQLQEADAQLDMERRNFHQASLEYVFKLQEV  170 (207)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-cCCCCC----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999977754 466667888887777666655422 112221    2  4777788888887777654444455555555


Q ss_pred             HHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          222 EAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       222 e~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      +.. .+.. +..|+++++|.++|+.+..+++.++.+
T Consensus       171 q~r-Kkfefle~ll~~m~a~~tff~qG~el~~d~~p  205 (207)
T cd07602         171 QER-KKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP  205 (207)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence            542 1222 567899999999999999999988753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1

>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]

Probab=98.68  E-value=1.9e-09  Score=111.55  Aligned_cols=83  Identities=34%  Similarity=0.497  Sum_probs=69.2

Q ss_pred             hhhhhhccCCCCCCCCCCC----CCccccceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEec
Q 018756          258 MVSEKQRKESAPPVIPSEN----SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFP  331 (351)
Q Consensus       258 l~se~~r~esa~~~~~~~s----~~~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FP  331 (351)
                      .+++++||.++.+|.+...    .....+++++.+...|.+..++||++..+|++.|+.+.++||++|+.  +|..||||
T Consensus       579 s~Sd~~RWi~Al~p~~~~~~~~~i~e~~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP  658 (695)
T KOG3523|consen  579 SQSDRQRWISALRPPSSTKPPEKIYEEWDCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFP  658 (695)
T ss_pred             chHHHHHHHHhcCCCCCCCChhhhhhccCCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcch
Confidence            4567889998876533222    12455788899999999999999999999999999999999999995  89999999


Q ss_pred             CCceeeccC
Q 018756          332 SANVEKRQR  340 (351)
Q Consensus       332 snYVe~i~~  340 (351)
                      ..||+.|..
T Consensus       659 ~~~veeI~~  667 (695)
T KOG3523|consen  659 SSYVEEITN  667 (695)
T ss_pred             HHHHHHhcC
Confidence            999998754

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=98.67  E-value=3.4e-06  Score=78.02  Aligned_cols=183  Identities=9%  Similarity=0.202  Sum_probs=128.7

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  127 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~  127 (351)
                      .+|+||...-++--..=|.++.+.++              ++.....++.+.   ..|...+.+|-.||++++.|...+.
T Consensus        16 ~~l~kl~K~~~~~~d~g~~~~~a~~~--------------F~~~l~d~~~~~---~gd~~i~~~L~kF~~~l~ei~~~~~   78 (200)
T cd07637          16 AKLDKLVKLCSGMIEAGKAYATTNKL--------------FVSGIRDLSQQC---KKDEMISECLDKFGDSLQEMVNYHM   78 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence            57888776554433333334443333              344444444442   3567789999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756          128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  207 (351)
Q Consensus       128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m  207 (351)
                      .|...+..-+++||+.++..|+.+. +-+...||+...++++-.....  +.+.++   |   ..++.|...+.+.+...
T Consensus        79 ~l~~q~e~~l~~pL~~F~k~dL~~~-KE~rK~Fdk~se~yd~al~k~~--~~k~kk---~---~~l~Ea~~~L~~~Rk~f  149 (200)
T cd07637          79 ILFDQAQRSVRQQLHSFVKEDVRKF-KETKKQFDKVREDLEIALVKNA--QAPRHK---P---HEVEEATSTLTITRKCF  149 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHh--hcCCCC---h---HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998753 4555577787777766555532  233222   2   47788888888888887


Q ss_pred             HHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          208 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       208 ~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      ....-+....++.++..-.---+..|+++++|+.+|+.+..+++++|.+
T Consensus       150 ~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~p  198 (200)
T cd07637         150 RHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDP  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence            6655556666665555211111578999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=98.65  E-value=1.6e-06  Score=84.31  Aligned_cols=156  Identities=15%  Similarity=0.240  Sum_probs=102.4

Q ss_pred             hhHHHhhhh---ccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhh
Q 018756           88 LSEDCCRYG---AENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRM  163 (351)
Q Consensus        88 l~e~~~kyg---~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rl  163 (351)
                      |+..+....   .++.. ..+.++|+.||..|+.++..|++.|-.+|..+.++|..||++....+.... .++-.+.+..
T Consensus       126 LSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a-~k~RkkV~~s  204 (289)
T PF10455_consen  126 LSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKA-NKARKKVENS  204 (289)
T ss_pred             HHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            555555555   34410 224578999999999999999999999999999999999999888666543 2222222222


Q ss_pred             hhHHHHHHHHHHHHHHhhhcCC-C-cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHH
Q 018756          164 RQEAETQAVEVSKRQQRVREAP-N-PENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEK  241 (351)
Q Consensus       164 rqe~E~~~~e~~rrq~k~re~~-~-~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~  241 (351)
                      |-++...+.++     |.+..+ + ...-.+|+.||..|-..-+.       |..-|..|-+.-.-  +..|..|+.|++
T Consensus       205 RL~~D~~R~~~-----k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e~--l~~Lk~lv~AQl  270 (289)
T PF10455_consen  205 RLQFDAARANL-----KNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSEP--LRLLKELVKAQL  270 (289)
T ss_pred             HHHHHHHHHHh-----cccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcch--HHHHHHHHHHHH
Confidence            22322222222     221111 1 11223566777766655554       77778776442222  577888999999


Q ss_pred             HHHHHHHHHHHHhHHHh
Q 018756          242 NYHLRIAAILGDVEAEM  258 (351)
Q Consensus       242 ~yh~~~~~IL~~L~~~l  258 (351)
                      .||+.++++|..+-..+
T Consensus       271 ~Yhk~aae~L~~~~~~l  287 (289)
T PF10455_consen  271 EYHKKAAEALSELLKSL  287 (289)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999887654

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=98.59  E-value=2.8e-08  Score=99.72  Aligned_cols=54  Identities=31%  Similarity=0.522  Sum_probs=50.8

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEE--EECCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG--ECKGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG--~~~Gk~G~FPsnYVe~  337 (351)
                      ..++|+|.|.+++++||.|..||+|.|++++|+||+.|  +++|+.|.||-|||+.
T Consensus       433 l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  433 LKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             ccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence            34799999999999999999999999999999999999  5799999999999974

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=98.57  E-value=9.7e-06  Score=75.53  Aligned_cols=182  Identities=12%  Similarity=0.184  Sum_probs=117.8

Q ss_pred             HhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 018756           70 VAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP  149 (351)
Q Consensus        70 ~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~  149 (351)
                      .|+++..+|.-+++.-.-+++.+.+.|.--- |.++...|.+++.||.+.+.|.+..+.|..++..-+.-||.+++.+|+
T Consensus        24 ~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l-~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dL  102 (215)
T cd07642          24 SVKAIHTSGLAHVENEEQYTQALEKFGSNCV-CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDL  102 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4455556666666555566666666666311 235678999999999999999999999999999999999999999888


Q ss_pred             hhhhh-hhhhhhHhhhhHHHHHHHHHHHHHHh-hhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHH
Q 018756          150 LEDAR-HLAQRYSRMRQEAETQAVEVSKRQQR-VREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALA---AIE  222 (351)
Q Consensus       150 ~e~~R-~L~~dy~rlrqe~E~~~~e~~rrq~k-~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~---~ve  222 (351)
                      +.. | -+...|||.|.++|+-....++-..+ .|...  .++.. - ..|.+-+...+.   .+..++.....   .+.
T Consensus       103 r~v-K~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~-~-~E~ae~l~~~R~---~fq~~a~dYv~~in~lk  176 (215)
T cd07642         103 KGV-KGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEIS-G-AEIAEEMEKERR---FFQLQMCEYLLKVNEIK  176 (215)
T ss_pred             HHh-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccc-h-hhHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            654 3 46667889999999877643321111 11110  11100 0 112222222222   23333444333   333


Q ss_pred             HHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756          223 AQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  258 (351)
Q Consensus       223 ~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l  258 (351)
                      ..+..=-+++++.+..|+.+|+++..+.+++|.+-+
T Consensus       177 ~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~  212 (215)
T cd07642         177 IKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI  212 (215)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333222368899999999999999999999998754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins

Probab=98.55  E-value=1.4e-05  Score=74.79  Aligned_cols=186  Identities=12%  Similarity=0.194  Sum_probs=122.3

Q ss_pred             HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhcc-CCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756           49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE-NNQNINENILPKAAAIYGDARKHVEKEQE  127 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e-~~~~~~~~~~~~a~~~~g~a~~~~~~~~~  127 (351)
                      .++||+.--++--+-++++..+...              ++....-|+.. .++|++|...+.++..|+.+++.|+..+.
T Consensus        17 ~~~kL~K~c~~~~~a~~~~~~A~~~--------------F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~   82 (215)
T cd07601          17 YMNQLLQACKRVYDAQNELKSATQA--------------LSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHS   82 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445544444444444444444444              44444445432 11134676777899999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHH
Q 018756          128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKL-HAAEARMQELKAN  206 (351)
Q Consensus       128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL-~~Ae~Kl~elk~~  206 (351)
                      .|...+..-++.||..++..|+.+. +-+...|||-..++++-.....+= .|.|+    .  +++ ..|++-+...++.
T Consensus        83 ~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~~d~al~K~~~l-~k~k~----~--~~~~~Ea~~~l~~~R~~  154 (215)
T cd07601          83 TLSSQLADTVLHPISQFMESDLAEI-MTLKELFKAASNDHDGVLSKYSRL-SKKRE----N--TKVKIEVNDEVYACRKK  154 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhHHHHHHHHHHhhC-CcCCC----c--hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999764 677778899888888766655321 11111    1  122 3466666666665


Q ss_pred             HHHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 018756          207 MAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILG-DVEAE  257 (351)
Q Consensus       207 m~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~IL~-~L~~~  257 (351)
                      .-...-+...+++.++.. .+.. +..|+++++|+.+|+.+..+++. ++.+=
T Consensus       155 F~~~~ldYv~~ln~iq~k-Kk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf  206 (215)
T cd07601         155 QHQTAMNYYCALNLLQYK-KTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEF  206 (215)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433444445545441 1111 57899999999999999999997 76653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase

Probab=98.53  E-value=1.5e-05  Score=74.08  Aligned_cols=186  Identities=12%  Similarity=0.195  Sum_probs=132.2

Q ss_pred             hhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018756           61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQV  137 (351)
Q Consensus        61 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~~~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~  137 (351)
                      +++=+.||+...+++.+|.-..=.-..++.+..-|+-+-..  .++|. ..+.++-.|+.+++.|++.+.-|......-+
T Consensus        15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l   94 (207)
T cd07636          15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL   94 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667888888888888776666666788888888754210  11222 2678999999999999999999999999999


Q ss_pred             hhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018756          138 LDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAA  217 (351)
Q Consensus       138 ~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~a  217 (351)
                      +.||..+...++.. .+--...|||-..++++-......=..|.|+       .+++.|++-|...++..-...=+....
T Consensus        95 ~~~L~~F~kedi~~-~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~-------~~~eEA~~~L~~~r~~F~~~sLdYV~q  166 (207)
T cd07636          95 ITPLEKFRKEQIGA-AKEAKKKYDKETEKYCAVLEKHLNLSSKKKE-------SQLHEADSQVDLVRQHFYEVSLEYVFK  166 (207)
T ss_pred             HHHHHHHHHHHHHH-HHHHhhhHhhhhhHHHHHHHHHhcCcccCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999877753 4555567888777776655543221112222       488889999999988864443333333


Q ss_pred             HHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756          218 LAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       218 m~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~  255 (351)
                      ++.|++. .+.. +..|+++++|.++|+.+..+++.++.
T Consensus       167 i~~vq~r-Kkfefle~llsfm~a~~tffhqG~el~~d~~  204 (207)
T cd07636         167 VQEVQER-KMFEFVEPLLAFLQGLFTFYHHGYELAKDFS  204 (207)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            3344431 1111 57799999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=98.50  E-value=2e-05  Score=73.36  Aligned_cols=182  Identities=12%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NIN-ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPL  141 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~-~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL  141 (351)
                      +.+|+...+++.+|.--.=+...++.+..-++-+-..  .++ ....|..+.+|+.++..+++.++-|..++...++.||
T Consensus        19 ~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL   98 (207)
T cd07635          19 KELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKPL   98 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555444433333444444444422100  112 2234789999999999999999999999999999999


Q ss_pred             HHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018756          142 RAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI  221 (351)
Q Consensus       142 ~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v  221 (351)
                      ..+...|+.+ .+-....|||-.+++++-.....+=..+.|+       .+++.|.+-+.-.++..-...-+-...++.|
T Consensus        99 ~~F~kedl~~-~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~-------~e~~EA~~~l~~~r~~F~~~sLdYv~qin~l  170 (207)
T cd07635          99 ERFRKEQLGA-VKEEKKKFDKETEKNYSLLEKHLNLSAKKKE-------PQLQEADVQVEQNRQHFYELSLEYVCKLQEI  170 (207)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhccCCCCc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988865 4777778999888887777665443334333       2566788888777776544433344444444


Q ss_pred             HHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756          222 EAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       222 e~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~  255 (351)
                      +.. .+.. +..|+++++|+.+|+.+..+++.++.
T Consensus       171 Q~r-KKfe~le~ll~~m~a~~tffhqG~el~~d~~  204 (207)
T cd07635         171 QER-KKFECVEPMLSFFQGVFTFYHQGYELAKDFN  204 (207)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            431 1111 56799999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]

Probab=98.49  E-value=5.6e-08  Score=97.32  Aligned_cols=55  Identities=36%  Similarity=0.537  Sum_probs=52.1

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      .++++|||.+..++||+|.+|-+|.|+++.++|||+|.++|.+|+||-|||+.+.
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            4789999999999999999999999999999999999999999999999998763

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2

Probab=98.47  E-value=2.3e-05  Score=72.55  Aligned_cols=182  Identities=9%  Similarity=0.218  Sum_probs=131.8

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  127 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~  127 (351)
                      ..|+||+..-+.--+.+++++.+.+.|+.       +.+-+    .+||+      ++...|.++-.|+.++..|++.+.
T Consensus        16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-------~l~d~----~~~~~------~De~i~~~l~kF~~~l~ei~~~~~   78 (200)
T cd07638          16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-------GIRDL----AQYSS------KDAVIETSLTKFSDTLQEMINYHT   78 (200)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHH----HHhCC------cchhhHHHHHHHHHHHHHHHHHHH
Confidence            57899998888888888888877777653       21112    23443      355788999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756          128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  207 (351)
Q Consensus       128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m  207 (351)
                      -|...+..-+++||..++..|+.+ .+-....|||...+++.-...-.+ ..|.|+       .+++.|..-+...++..
T Consensus        79 ~L~~q~~~~l~~~L~~F~k~dl~~-vke~kk~FdK~s~~~~~aL~K~~~-~~k~k~-------~e~eEa~~~l~~~r~~F  149 (200)
T cd07638          79 ILFDQAQRSIKAQLQTFVKEDLRK-FKDAKKQFDKVSEEKENALVKNAQ-VQRNKQ-------HEVEEATNILTATRKCF  149 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHhcc-CCcCch-------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999988865 466667888877666444433221 112221       46677777888777776


Q ss_pred             HHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          208 AILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       208 ~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                      -...-+...+++.++.. .+.. +..|+++++|+.+|+.+..+++.++.+
T Consensus       150 ~~~~ldYv~~ln~vq~k-Kkfe~le~ll~~m~a~~tff~qG~el~~d~~p  198 (200)
T cd07638         150 RHIALDYVLQINVLQSK-RRSEILKSMLSFMYAHLTFFHQGYDLFSELGP  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            55555555556555552 1222 577999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.46  E-value=6.9e-08  Score=102.72  Aligned_cols=59  Identities=27%  Similarity=0.497  Sum_probs=53.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCe-eeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-AGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk-~G~FPsnYVe~i~~~  341 (351)
                      ...|+|||||.+..++||+|-+|-+|.++++.+.|||.|..+|+ .+|||+|||++|.+.
T Consensus       774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            45799999999999999999999999999998899999999865 699999999998763

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.41  E-value=2.1e-07  Score=88.98  Aligned_cols=63  Identities=21%  Similarity=0.394  Sum_probs=55.2

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEee--eCCCCeeEEEE-CCeeeEecCCceeeccCCCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~--~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ....+.|||+|.+.++.||+|.+||.+.|+.  ..|++||.++. .|..|++|.|||+++..-|.+
T Consensus       190 vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t  255 (379)
T KOG4226|consen  190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST  255 (379)
T ss_pred             EEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence            3456889999999999999999999999985  45789999995 899999999999999887644

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=3.2e-07  Score=94.18  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhHHHhhhhhhccCCCCCCCCCCCCCccccceEEEEecCCCCCCCCCccccCCCEEEEeeeC---CCCeeE
Q 018756          244 HLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSE  320 (351)
Q Consensus       244 h~~~~~IL~~L~~~l~se~~r~esa~~~~~~~s~~~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~---d~gWwe  320 (351)
                      +-+|.+.|-..+..|.                    .+....+.|+|||+++.++||+|.+||.++|++..   +.+||+
T Consensus       664 Y~~CsqyL~~vqesmG--------------------~mN~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWw  723 (752)
T KOG0515|consen  664 YDQCSQYLYGVQESMG--------------------SMNKGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWW  723 (752)
T ss_pred             HHHHHHHHHHHHHhhc--------------------ccccceeEEeecccccccccccccCCceeEEEecCCcchhhhhh
Confidence            3567777777666543                    11234578999999999999999999999999764   348999


Q ss_pred             EEECCeeeEecCCceeeccCC
Q 018756          321 GECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       321 G~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ++.+|+.||||.||+-....+
T Consensus       724 a~lng~eGyVPRnylgLyPri  744 (752)
T KOG0515|consen  724 ARLNGEEGYVPRNYLGLYPRI  744 (752)
T ss_pred             HhhcCcccccchhhhhcCccc
Confidence            999999999999998765443

>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]

Probab=98.31  E-value=1.8e-07  Score=94.85  Aligned_cols=55  Identities=29%  Similarity=0.478  Sum_probs=51.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i  338 (351)
                      .+++|+|||++-++.|++|..+|.|.++...+.|||.|.. .|..|+||+|||+.+
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            4689999999999999999999999999999999999996 899999999999865

>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]

Probab=98.30  E-value=5.5e-07  Score=82.95  Aligned_cols=55  Identities=29%  Similarity=0.448  Sum_probs=50.9

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||.+++++|.+|.-||.|.-+..+++||..|.+  +|.+|..|+||++-+
T Consensus       208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            4579999999999999999999999999999999999986  899999999999853

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=98.28  E-value=0.00019  Score=66.50  Aligned_cols=133  Identities=13%  Similarity=0.129  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC
Q 018756          111 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA  184 (351)
Q Consensus       111 a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~  184 (351)
                      ....|..+++.|...-......+...|++|+..+..-.+      ++++++|. |||++++.++....+      |. +-
T Consensus        72 ~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~l-Dyd~~~~k~~k~~~~------k~-~~  143 (216)
T cd07599          72 RLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKL-DYDKLQNKLNKLLQK------KK-EL  143 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhc------CC-CC
Confidence            344677777777654444455888999999999987554      35688998 999999998772221      21 10


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018756          185 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG  252 (351)
Q Consensus       185 ~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~  252 (351)
                      + +....+|..|+.+|++.+..+..++..+..-|+.+-+-...+--.-+.+|+--++.|+......+.
T Consensus       144 ~-~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~  210 (216)
T cd07599         144 S-LKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQ  210 (216)
T ss_pred             C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 111378888999999999999999999999888765522222122344466667777665555443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=98.24  E-value=0.00032  Score=65.49  Aligned_cols=179  Identities=13%  Similarity=0.173  Sum_probs=120.6

Q ss_pred             HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756           67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus        67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      +.+.+.+++.-....-..+..||..+.-||..     ++..|++||..++++...|.+.++.-...+-..|++||..+..
T Consensus        23 l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~-----E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~   97 (211)
T cd07598          23 LCQDFAAYTRKTARLRDKGDELAKSINAYADT-----ENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGT   97 (211)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444556788888999985     3456999999999999999999999999999999999998876


Q ss_pred             cChh-hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 018756          147 GAPL-EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ  225 (351)
Q Consensus       147 ~~~~-e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qq  225 (351)
                      --+- .+.++..       +.+..+......+..|.|..+.++ ..+|.+||.++...+.-.....+....-|..+|.  
T Consensus        98 l~k~~k~~~K~~-------~~ar~~~~~~~~~leklk~~~~~d-~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~--  167 (211)
T cd07598          98 ICKHARDDLKNT-------FTARNKELKQLKQLEKLRQKNPSD-RQIISQAESELQKASVDANRSTKELEEQMDNFEK--  167 (211)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3321 1222221       111111111113334444332233 4566678888888888777777777777877776  


Q ss_pred             hhhh-H-hHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          226 HRLT-F-QRLVAMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       226 q~lt-~-~~L~~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      +++. + +-|..||..+..||.++.++...+...+.+
T Consensus       168 ~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~  204 (211)
T cd07598         168 QKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQN  204 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3322 3 357789999999999999998887776543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein

Probab=98.23  E-value=8.7e-05  Score=68.21  Aligned_cols=158  Identities=14%  Similarity=0.164  Sum_probs=101.1

Q ss_pred             hchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 018756           58 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHV-EKEQEDFNRLL  133 (351)
Q Consensus        58 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~-~~~~~~l~~~~  133 (351)
                      .+.+.++||   |.++|.+..   .-+.+.   ....|-=|+..++   .+  . .+...|..++..+ ...+.++...+
T Consensus        19 ~~~~~l~kd~k~Y~~~~~~~~---~~~~~~---~~~~~d~y~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~e~~~~i   86 (195)
T cd07589          19 KQVQLVVRNVELYLQHVQESV---LVKVLA---LEVVLDLYPSNHP---RL--E-SKWERFRRVVRGISSKALPEFKSRV   86 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHhccCCCh---hh--H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999   777787776   233333   2222333776665   21  2 2344555555554 44889999999


Q ss_pred             HhhhhhHHHHhhhcCh------hhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756          134 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  207 (351)
Q Consensus       134 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m  207 (351)
                      ...|++|+..+..-.+      +++.++|- ||||.++.++.        ..|      ++  .++..|.+.|+.+++. 
T Consensus        87 ~~~V~~Pl~~~~~~~~~~~k~I~KR~~Kll-DYdr~~~~~~k--------~~k------~e--~~l~~a~~~y~~lN~~-  148 (195)
T cd07589          87 RKLVIEPLSSLLKLFSGPQKLIQKRYDKLL-DYERYKEKKER--------GGK------VD--EELEEAANQYEALNAQ-  148 (195)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhc-cHHHHHHHHHh--------hcc------hH--HHHHHHHHHHHHHHHH-
Confidence            9999999999976443      35677887 89987766433        011      22  5566666666666665 


Q ss_pred             HHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 018756          208 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL  251 (351)
Q Consensus       208 ~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL  251 (351)
                            +...|+.+-+-...+.-..+.+|+..|..||....+-+
T Consensus       149 ------L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~  186 (195)
T cd07589         149 ------LKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA  186 (195)
T ss_pred             ------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  66667765543333334568889999999998776543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1

Probab=98.17  E-value=0.00037  Score=64.96  Aligned_cols=200  Identities=14%  Similarity=0.198  Sum_probs=130.2

Q ss_pred             eecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHH
Q 018756           38 VIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGD  117 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~  117 (351)
                      .++|+==.-+..|+||              ++-+.|++.+|.-+++.-.-+.+...+.|.-.- +.++...|.|++.|+.
T Consensus         6 ~~ee~l~~~e~~L~Kl--------------~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~-~~dd~~i~~a~~kfs~   70 (215)
T cd07641           6 VLEEALDQDRTALQKV--------------KKSVKAIYNSGQDHVQNEENYAQALDKFGSNFL-SRDNPDLGTAFVKFST   70 (215)
T ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHH
Confidence            3455444455666664              666777788888777777777777888887752 2367789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhh-hhhhhhHhhhhHHHHHHHHHHHHHHh-hhcCC--CcchHHHH
Q 018756          118 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDAR-HLAQRYSRMRQEAETQAVEVSKRQQR-VREAP--NPENVAKL  193 (351)
Q Consensus       118 a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R-~L~~dy~rlrqe~E~~~~e~~rrq~k-~re~~--~~~~~~kL  193 (351)
                      .++.|....-.|-.++..-|.-||.+++-+|++.. | -+...++|...++|+-....++.... .|+..  .++ +.-.
T Consensus        71 ~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~-K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e-~~~~  148 (215)
T cd07641          71 LTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGV-KGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTE-ITGA  148 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhcc-ccch
Confidence            99999999999999999999999999999888655 3 55556777777777776654322111 12210  111 0001


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756          194 HAAEARMQELKANMAILGKEAAAALAAI---EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  258 (351)
Q Consensus       194 ~~Ae~Kl~elk~~m~~l~kea~~am~~v---e~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l  258 (351)
                       .|.+-|...+..+   ...+...+..+   +....---++.|+.+.+|+.+|+++..+.+++|.+=+
T Consensus       149 -Eaa~~l~~~Rr~F---q~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~  212 (215)
T cd07641         149 -EIAEEMEKERRLF---QLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYI  212 (215)
T ss_pred             -hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1233333333331   11123333222   2211111168899999999999999999999987644

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=98.17  E-value=0.00049  Score=64.15  Aligned_cols=194  Identities=15%  Similarity=0.214  Sum_probs=124.0

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  127 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~  127 (351)
                      --||+|..   +|+.    |.+++.+++.++.--.+++.++|+.+..=.       ..-.+|.+|..+.+.++.|+..+.
T Consensus        10 P~~e~lv~---~~~k----Y~~al~~~~~a~~~f~dal~ki~~~A~~s~-------~s~~lG~~L~~~s~~~r~i~~~~~   75 (219)
T PF08397_consen   10 PAWENLVS---LGKK----YQKALRAMSQAAAAFFDALQKIGDMASNSR-------GSKELGDALMQISEVHRRIENELE   75 (219)
T ss_dssp             HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------ccccHHHHHHHHHHHHHHHHHHHH
Confidence            34555543   3444    556778888888777778777777655311       123699999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhh---hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHH
Q 018756          128 DFNRLLSSQVLDPLRAMITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK  204 (351)
Q Consensus       128 ~l~~~~~~~~~~PL~~~~~~~~~e~---~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk  204 (351)
                      .+...+-..||-||..-+..+.+..   =++....|++.+.+.+....+.. |..|.......+....++.+   ++.+.
T Consensus        76 ~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~-Kl~KK~~kgk~~~~~~~~~~---~~~v~  151 (219)
T PF08397_consen   76 EVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELK-KLRKKSRKGKDDQKYELKEA---LQDVT  151 (219)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCTSCHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCCCccccHHHHHH---HHHHH
Confidence            9999999999999999999888754   23334455555555555544442 22222111122323344444   33333


Q ss_pred             HHHHHhhHHHHHHHHH-HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756          205 ANMAILGKEAAAALAA-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       205 ~~m~~l~kea~~am~~-ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~  259 (351)
                      ..-..|..-...++-. +-+...|.+  +..++.+++.+..||.++..+|...-+...
T Consensus       152 ~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~  209 (219)
T PF08397_consen  152 ERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ  209 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3333333334444433 333456666  588999999999999998887776555443

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.15  E-value=1e-06  Score=81.45  Aligned_cols=56  Identities=25%  Similarity=0.405  Sum_probs=51.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..+..++|||.+..+++|.|.+||.|.|+...++.||.|.+.|+.|+||++||...
T Consensus       163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence            34578999999999999999999999999999999999999999999999998653

>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=1.5e-06  Score=84.29  Aligned_cols=59  Identities=27%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC-----CCCeeEEEE--CCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGEC--KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-----d~gWweG~~--~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+.++.||+|++||.+.|..+.     +..||....  +|..||||.|||+.+..-|
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~  334 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQP  334 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCC
Confidence            4689999999999999999999999988543     335777764  5778999999999987633

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=98.05  E-value=1.3e-06  Score=81.68  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...++++|||.++...+|.|++|+++.|+.+.++.||..+. .|+.|++|.+||+...+..
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~  184 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPAS  184 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhh
Confidence            34578899999999999999999999999999999999995 8999999999999876554

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1

Probab=98.03  E-value=0.0008  Score=62.50  Aligned_cols=177  Identities=11%  Similarity=0.125  Sum_probs=110.1

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI------LPKAAAIYGDARKHVEKEQEDFNRLLSSQVL  138 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~------~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~  138 (351)
                      ++||+-..++|.+|....=+...++.++.-++-+-.   .+..      .+.+|-.||..+..|++.+.-|.......++
T Consensus        19 kkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~i---gd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~   95 (207)
T cd07633          19 KDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFI---GDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLI   95 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666655555555555555555555422   3333      7899999999999999999999999999999


Q ss_pred             hHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018756          139 DPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAAL  218 (351)
Q Consensus       139 ~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am  218 (351)
                      .||++++--++.. .+--...|||.+.++++-...-..=..|.     .+  .+++.|.+.|.-.+...-..   +-+..
T Consensus        96 ~~L~~F~Kedi~~-~Ke~KK~FdK~se~~~~aL~k~a~~s~k~-----K~--~e~eEA~~~L~~~r~~F~~~---aLdYV  164 (207)
T cd07633          96 KPLENFRKEQIGF-TKERKKKFEKDSEKFYSLLDRHVNLSSKK-----KE--SQLQEADLQVDKERQNFYES---SLEYV  164 (207)
T ss_pred             HHHHHHHHHHHHH-HHHHhhhhhhhhhHHHHHHHHHhcccccC-----Cc--hHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            9999987644332 23333345554444433322211110121     22  57888888888887774222   22222


Q ss_pred             HHHHH-Hhhh-h-hHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756          219 AAIEA-QQHR-L-TFQRLVAMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       219 ~~ve~-qqq~-l-t~~~L~~lveae~~yh~~~~~IL~~L~  255 (351)
                      ..+.. |... . -|.-|++|+.+..+|+.+..+++.++.
T Consensus       165 ~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~  204 (207)
T cd07633         165 YQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFL  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence            22211 1111 1 156788999999999999999988864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3

Probab=98.00  E-value=0.0015  Score=60.46  Aligned_cols=185  Identities=14%  Similarity=0.184  Sum_probs=123.8

Q ss_pred             HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756           67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus        67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      +-+.|+++.+.|-.++|.-.-++|.+.+.|..-- +.++..+|-|.+.|+--.+.++-.--+|-.++..-+.=||.+++-
T Consensus        21 ~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l-~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK   99 (213)
T cd07640          21 IKKIVKAIHNSGLNHVENEEQYTEALENLGNSHL-SQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLK   99 (213)
T ss_pred             HHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHH
Confidence            3456778999999999999999999999999766 556688999999999999999988888888888889999999988


Q ss_pred             cChhhhhh-hhhhhhHhhhhHHHHHHHHHHH-HHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-H
Q 018756          147 GAPLEDAR-HLAQRYSRMRQEAETQAVEVSK-RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIE-A  223 (351)
Q Consensus       147 ~~~~e~~R-~L~~dy~rlrqe~E~~~~e~~r-rq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve-~  223 (351)
                      +|++.. | -+...++|...++|+-....++ +..+.|+.....  -+...|.+-|...+..+   ...+...+..+. .
T Consensus       100 ~dlr~~-K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~--~e~eEaae~l~~eRr~F---ql~acdYllkin~i  173 (213)
T cd07640         100 GQLRDG-RLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIR--LDMTDTAEDMQRERRNF---QLHMCEYLLKAQES  173 (213)
T ss_pred             HHhhhh-hHHHHhHHHHHHHHHHHHHHHHhccccccchhccccc--ccHHHHHHHHHHHHHHH---HHHHHHHHHHHhHH
Confidence            777644 3 4444555666666555544321 111111110000  02233444444444442   112333333221 1


Q ss_pred             Hhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756          224 QQHR--LTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  258 (351)
Q Consensus       224 qqq~--lt~~~L~~lveae~~yh~~~~~IL~~L~~~l  258 (351)
                      |..+  --++.|+.|.+|+.+|+++..+.+++|.+=+
T Consensus       174 q~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyi  210 (213)
T cd07640         174 QMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFI  210 (213)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            1111  1268899999999999999999999987643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=3.2e-06  Score=84.60  Aligned_cols=54  Identities=31%  Similarity=0.505  Sum_probs=49.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCC--CeeEEEECCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~--gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      ..+.++|+|..+.+++|+|.+||+|+++++.+.  .||.|..+|..|+||.|||+.
T Consensus       417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            368999999999999999999999999976544  799999999999999999964

>KOG4773 consensus NADPH oxidase [Energy production and conversion]

Probab=97.89  E-value=2.5e-06  Score=83.91  Aligned_cols=66  Identities=26%  Similarity=0.368  Sum_probs=59.3

Q ss_pred             CccccceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756          278 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       278 ~~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      +.++....+.+++||.+....||.|..||++.++...+.+||.|..+|.+||||..|+..+...|.
T Consensus       170 ~~~~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe  235 (386)
T KOG4773|consen  170 VLGMAAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE  235 (386)
T ss_pred             cchhhhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence            344455678999999999999999999999999999999999999999999999999999877776

>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1

Probab=97.86  E-value=0.005  Score=57.63  Aligned_cols=183  Identities=10%  Similarity=0.160  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHH
Q 018756           44 MQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHV  122 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~-~~~~~~~~~~~a~~~~g~a~~~~  122 (351)
                      -|-||-+++.|-.|+       +.--              +-..++.-..-|-..+ .+..+|...+.+|-.|+.++..|
T Consensus        19 ~~~~~~~~~~~~a~~-------~ls~--------------a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El   77 (215)
T cd07631          19 NQLFQAMHRIYDAQN-------ELSA--------------ATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL   77 (215)
T ss_pred             HHHHHHHHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHH
Confidence            467999999998776       1111              1124666667777322 21245667899999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHH-HHHHHHH
Q 018756          123 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLH-AAEARMQ  201 (351)
Q Consensus       123 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~-~Ae~Kl~  201 (351)
                      ++.+.-|...+..-++.||..+...|+.+ ++-+...|||-..+++.-.....+= .|.|.    .  ++++ .|.+-+.
T Consensus        78 ~~~~~~L~~q~~~sl~~pL~~F~kedL~~-~Ke~KK~FdK~Se~~d~Al~K~a~l-sk~K~----~--E~~~eea~~~v~  149 (215)
T cd07631          78 SSCHAVLSTQLADAMMFPITQFKERDLKE-ILTLKEVFQIASNDHDAAINRYSRL-SKRRE----N--EKVKYEVTEDVY  149 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhcC-CCCCC----c--hHHHHHHHHHHH
Confidence            99999999999999999999999988865 5777788999888887766665422 12221    1  2221 1333333


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHH-HHHHhHH
Q 018756          202 ELKANMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAA-ILGDVEA  256 (351)
Q Consensus       202 elk~~m~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~-IL~~L~~  256 (351)
                      -.++..-..--+-...++.++.. .+.. +..|+++++|..+|+.+..+ +..++.+
T Consensus       150 ~tR~~F~~~aLdYv~qLn~lQ~r-KKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~  205 (215)
T cd07631         150 TSRKKQHQTMMHYFCALNTLQYK-KKIALLEPLLGYMQAQISFFKMGSENLNEQLEE  205 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33333222211222223333331 1111 57799999999999999999 4446554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules

Probab=97.81  E-value=0.0096  Score=56.34  Aligned_cols=216  Identities=18%  Similarity=0.223  Sum_probs=134.3

Q ss_pred             HHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhcc
Q 018756           19 QQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e   98 (351)
                      .|.|.+.||.++-   +-+|+=-.||.  -+||.|=...    .+=+.+++-++.++..=+.-...-+.||+.+.--|..
T Consensus        13 kq~~~e~~g~~~~---~~~it~D~eL~--~kle~l~~~~----~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~   83 (229)
T PF06456_consen   13 KQMVSEKLGKKED---SRAITVDDELD--AKLELLRDTQ----RTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVR   83 (229)
T ss_dssp             --------------------CHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHcCcccc---cchhhcchHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5689999985542   23443334443  2344332111    1223466666666666555555556899999999984


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHH
Q 018756           99 NNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQ  178 (351)
Q Consensus        99 ~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq  178 (351)
                      -.    ...+|.+...+|++++.|++-+..|...+. -|+.-|+++.++++ +|.+.-...|+.-|-|+-+-+.+++.=.
T Consensus        84 e~----~~~l~~~f~~~~~~~~~~~~~~~~L~~~l~-~~~~~l~Tf~~kaI-~DT~~Tik~ye~aR~EY~ay~~~lke~~  157 (229)
T PF06456_consen   84 EK----SPALGEEFSANGEAQRSLAKQGETLLKALK-RFLSDLNTFRNKAI-PDTLLTIKKYEDARFEYDAYRLWLKEMS  157 (229)
T ss_dssp             -H-----CCGHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33    235999999999999999999999998865 57778888888765 5667777788888888887777764332


Q ss_pred             HhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 018756          179 QRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL  251 (351)
Q Consensus       179 ~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL  251 (351)
                      .+.  .+ ..-...+.+.+...+.++|+.+..|-.++..-|.-+++..-++-..+|..|..+-..||..+.+.|
T Consensus       158 ~e~--~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~l  229 (229)
T PF06456_consen  158 DEL--DPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQAL  229 (229)
T ss_dssp             --T--STSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc--CchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence            121  12 222246888888888888888777777676667666664333334689999999999998877654

The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=97.77  E-value=0.0065  Score=54.89  Aligned_cols=162  Identities=14%  Similarity=0.227  Sum_probs=92.2

Q ss_pred             hhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC-----hhhhhhhhhhhhH
Q 018756           87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA-----PLEDARHLAQRYS  161 (351)
Q Consensus        87 ~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~-----~~e~~R~L~~dy~  161 (351)
                      .||.++..++..-. . .+..++.++..+|.++..+....+.+....-..|++||..+..-.     .+..=.++-.+|+
T Consensus        43 elg~~~~~Ls~~e~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~  120 (218)
T cd07596          43 EFGKALIKLAKCEE-E-VGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQ  120 (218)
T ss_pred             HHHHHHHHHHhhcc-c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777776533 0 112599999999999999999999999999999999999988511     1111112223444


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhcCC--Ccc----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHH
Q 018756          162 RMRQEAETQAVEVSKRQQRVREAP--NPE----NVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLV  234 (351)
Q Consensus       162 rlrqe~E~~~~e~~rrq~k~re~~--~~~----~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~  234 (351)
                      .+.+.+.......+    |.+..+  +++    ...+|..++..+..++..+..+...+...|...+.. ....+ .-|.
T Consensus       121 ~~~~~l~~k~~~~~----kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~-~~~dlk~~l~  195 (218)
T cd07596         121 SLKKDLASKKAQLE----KLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEE-RARDLKAALK  195 (218)
T ss_pred             HHHHHHHHHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            44333333333222    221111  111    112333444444444444444444344333333221 11113 3467


Q ss_pred             HHHHHHHHHHHHHHHHHHHhH
Q 018756          235 AMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       235 ~lveae~~yh~~~~~IL~~L~  255 (351)
                      .|++.+..|++.+.++.+.+.
T Consensus       196 ~~~~~qi~~~~~~~~~W~~~~  216 (218)
T cd07596         196 EFARLQVQYAEKIAEAWESLL  216 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            799999999999988877653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=97.76  E-value=4.2e-06  Score=85.37  Aligned_cols=57  Identities=28%  Similarity=0.427  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ...++|+.||....++||.|+++|+|++++.-++..|.|+.+|-.||||+.||+.+.
T Consensus       548 ~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             hHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence            345889999999999999999999999999999999999999999999999998764

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=97.69  E-value=0.013  Score=54.12  Aligned_cols=161  Identities=15%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             hhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhh
Q 018756           85 GTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMR  164 (351)
Q Consensus        85 ~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlr  164 (351)
                      ...||.++...|.--.    +..++.++..+|++...+.+..+.+...--..|.+||+.+..-.  ...|.+-.+=+++.
T Consensus        61 ~~e~~~~~~~la~~E~----~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~--~svk~~l~~R~~~~  134 (236)
T PF09325_consen   61 LAEFGSSFSQLAKSEE----EKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYI--ESVKEALNRRDKKL  134 (236)
T ss_pred             HHHHHHHHHHhhcccC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            3356666666665533    34699999999999999999999999999999999999876521  11111111111223


Q ss_pred             hHHHHHHHHHHHHHHh---hhcCC-CcchHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHhhhhhH-hH
Q 018756          165 QEAETQAVEVSKRQQR---VREAP-NPENVAKLHAAEARMQELKANM-------AILGKEAAAALAAIEAQQHRLTF-QR  232 (351)
Q Consensus       165 qe~E~~~~e~~rrq~k---~re~~-~~~~~~kL~~Ae~Kl~elk~~m-------~~l~kea~~am~~ve~qqq~lt~-~~  232 (351)
                      .+++....++.+++..   .+.++ ++  ..|+..|+..+.++...+       ..+.+.+...+...+.+ ....+ ..
T Consensus       135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~--~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~-k~~d~k~~  211 (236)
T PF09325_consen  135 IEYQNAEKELQKKKAQLEKLKASGKNR--QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE-KVKDFKSM  211 (236)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3444444444444333   22221 12  145555555555555443       34433333333332221 11123 45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 018756          233 LVAMVEGEKNYHLRIAAILGDV  254 (351)
Q Consensus       233 L~~lveae~~yh~~~~~IL~~L  254 (351)
                      |..|++.+..|++++.++-+.+
T Consensus       212 l~~~~~~~i~~~~~~~~~We~~  233 (236)
T PF09325_consen  212 LEEYAESQIEYQKKMLEAWETF  233 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Confidence            8889999999999998887665

This is the C-terminal dimerisation domain [].

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

Probab=97.61  E-value=0.018  Score=54.33  Aligned_cols=175  Identities=15%  Similarity=0.243  Sum_probs=108.7

Q ss_pred             HHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 018756           69 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA  148 (351)
Q Consensus        69 r~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~  148 (351)
                      +++.+++.++.--.+...++||.-..  +. |    --.+|.+|..+.+.++.++.-.+.+...+-..+|.||..=+..+
T Consensus        34 kal~a~~~a~~~~~dAl~kia~~A~~--s~-~----sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d  106 (223)
T cd07605          34 KALQALSQAAKVFFDALAKIGELASQ--SR-G----SQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELD  106 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc--CC-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            44555555555555555555544322  11 2    12588888888888899998888888899999999999888877


Q ss_pred             hhhh---hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHH
Q 018756          149 PLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA-IEAQ  224 (351)
Q Consensus       149 ~~e~---~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~-ve~q  224 (351)
                      ++.+   =.+-..+|++.|.+++.-..+..+=+-|.+.+..+....++.++.+-+..-...|..+   ...++-. +-..
T Consensus       107 ~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~---~~~~lr~al~EE  183 (223)
T cd07605         107 QKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAF---VSQGLRDALLEE  183 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            7754   2333447777777877777776543333332111222357776655444443333333   3344433 2223


Q ss_pred             hhhhh--HhHHHHHHHHHHHHHHHHHHHHHH
Q 018756          225 QHRLT--FQRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       225 qq~lt--~~~L~~lveae~~yh~~~~~IL~~  253 (351)
                      ..|.+  +..++.+++.+..||......|..
T Consensus       184 RrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~  214 (223)
T cd07605         184 RRRYCFLVDKHCSVAKHEIAYHAKAMTLLST  214 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34544  588899999999999887776654

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me

>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2

Probab=97.58  E-value=0.012  Score=54.96  Aligned_cols=159  Identities=13%  Similarity=0.186  Sum_probs=104.9

Q ss_pred             hhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhH
Q 018756           88 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE  166 (351)
Q Consensus        88 l~e~~~kyg~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe  166 (351)
                      |+.-.+-|...+-. |.+|...+.+|..|+.++..|++.+.-|...+..-++.||+.++..|+.+. +-+...|+|.+.+
T Consensus        42 ~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~v-Ke~KK~FdK~Se~  120 (215)
T cd07632          42 LSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEV-STLKDLFGIASNE  120 (215)
T ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Confidence            45556678775432 456677899999999999999999999999999999999999999888774 7777889998888


Q ss_pred             HHHHHHHHHHHHHhhhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHH
Q 018756          167 AETQAVEVSKRQQRVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNY  243 (351)
Q Consensus       167 ~E~~~~e~~rrq~k~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~y  243 (351)
                      +++-.....+= .|.|++.  .++++..|..+..+|..       ..-+-.-.++.++.. .+.- +.-|.+|+.|+.+|
T Consensus       121 ~d~AL~Knaql-skkK~~E~~eae~~~~l~~sRr~F~~-------~ALdYV~qiN~lQ~R-KKfeiLE~mLsym~Aq~TF  191 (215)
T cd07632         121 HDLSMAKYSRL-PKKRENEKVKAEVAKEVAYSRRKQHL-------SSLQYYCALNALQYR-KRVAMLEPMLGYTHGQINF  191 (215)
T ss_pred             HHHHHHHHhhC-CcCCchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            87766665421 2222210  12222233333333332       111122223333321 1111 56788899999999


Q ss_pred             HHHHHHHHHHhHH
Q 018756          244 HLRIAAILGDVEA  256 (351)
Q Consensus       244 h~~~~~IL~~L~~  256 (351)
                      +.+..+++.+--+
T Consensus       192 FhQGyeL~~~~~~  204 (215)
T cd07632         192 FKKGAELFSKKLD  204 (215)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888776433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=97.39  E-value=0.00014  Score=75.86  Aligned_cols=95  Identities=17%  Similarity=0.288  Sum_probs=60.1

Q ss_pred             hhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhh-----hccCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018756           60 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRY-----GAENNQNINENI-LPKAAAIYGDARKHVEKEQEDFNRLL  133 (351)
Q Consensus        60 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~ky-----g~e~~~~~~~~~-~~~a~~~~g~a~~~~~~~~~~l~~~~  133 (351)
                      ++.|=|+|++--..+|+.-....-++.+++.....|     |...+   +|.. .+..|-+||.-.++++++|--|..+-
T Consensus        32 tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~t---dde~~ia~slkefa~ll~~ve~er~~~v~~A  108 (812)
T KOG1451|consen   32 TNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAET---DDEIFIATSLKEFASLLNQVEDERMRMVGNA  108 (812)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeecccccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456777777777777777666666666666666554     22222   3322 46777777887788888887777777


Q ss_pred             HhhhhhHHHHh---hhcChhhhhhhhh
Q 018756          134 SSQVLDPLRAM---ITGAPLEDARHLA  157 (351)
Q Consensus       134 ~~~~~~PL~~~---~~~~~~e~~R~L~  157 (351)
                      ..-.|+||..+   +-|..+|.-.+-|
T Consensus       109 se~li~PlekFRkEqIG~~KE~KkKyd  135 (812)
T KOG1451|consen  109 SESLIEPLEKFRKEQIGTLKEEKKKYD  135 (812)
T ss_pred             HHHHHhHHHHHHHHHhhhhHHHHhhhh
Confidence            77777777544   3445555433333

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30

Probab=97.38  E-value=0.023  Score=52.41  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC
Q 018756          107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA  184 (351)
Q Consensus       107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~  184 (351)
                      .|+.|+-.+|.+..++...-..+...+..+|++||+.|+.  ++++..-+    .=+..+.++|.....+.++..+.   
T Consensus        67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~----~R~~~q~~~e~~~e~L~~k~~~l---  139 (200)
T cd07624          67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLK----RRDQFQIEYELSVEELNKKRLEL---  139 (200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---
Confidence            5999999999999999999999999999999999999875  22222111    11123445566666666655543   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756          185 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       185 ~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~~yh~~~~~IL~~  253 (351)
                           ..++..|+.+|+..+..|       ..-+...+. +.+..+ ..|..|++.+..|++++.+.-+.
T Consensus       140 -----~~ev~~a~~~~e~~~~~~-------~~E~~rF~~-~K~~d~k~~l~~~a~~qi~~~~~~~~~We~  196 (200)
T cd07624         140 -----LKEVEKLQDKLECANADL-------KADLERWKQ-NKRQDLKKILLDMAEKQIQYYEQCLAAWEE  196 (200)
T ss_pred             -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 357788888888887763       222222222 112223 46888999999999988765444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

Probab=97.34  E-value=0.046  Score=51.69  Aligned_cols=153  Identities=16%  Similarity=0.197  Sum_probs=95.3

Q ss_pred             hhHHHhhhhccCCCCCCC-C-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhh----hH
Q 018756           88 LSEDCCRYGAENNQNINE-N-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQR----YS  161 (351)
Q Consensus        88 l~e~~~kyg~e~~~~~~~-~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~d----y~  161 (351)
                      ..|++.|-|.--+ ++-| + .+|-+|..+..-++.|+.-...|...|-..+|.||+.-+.- -+...=.||.|    |+
T Consensus        48 f~Da~qKvad~A~-~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~k  125 (231)
T cd07643          48 FLDAFQKIADAAT-NTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYK  125 (231)
T ss_pred             HHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            3444444444333 2223 2 69999999999999999999999999999999999887662 22234445555    99


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHH
Q 018756          162 RMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEG  239 (351)
Q Consensus       162 rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lvea  239 (351)
                      |.|++.-....+.-|=|.|.|... .+.-..|.+|..-+..-...+.++.+.+...  .+-.+..|.+  ++.|...++.
T Consensus       126 k~R~elKk~~~dt~klqkk~rKg~-~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~--aLiEER~Rfc~Fvs~l~pVl~~  202 (231)
T cd07643         126 KARQEIKKKSSDTIRLQKKARKGK-GDLQPQLDSAMQDVNDKYLLLEETEKKAVRN--ALIEERGRFCTFVSFLKPVLDE  202 (231)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhccC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence            999998766666666555555432 2323566666554444444444444433221  1222334544  4777778887


Q ss_pred             HHHHHH
Q 018756          240 EKNYHL  245 (351)
Q Consensus       240 e~~yh~  245 (351)
                      |..-.-
T Consensus       203 e~~ml~  208 (231)
T cd07643         203 EISMLG  208 (231)
T ss_pred             HHHHHh
Confidence            776543

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate

>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]

Probab=97.30  E-value=6.5e-05  Score=72.77  Aligned_cols=54  Identities=24%  Similarity=0.338  Sum_probs=50.8

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      .|.++|+|.+..++||....||++.+-+...+|||.|++.|..|.||+.|+++.
T Consensus       365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            589999999999999999999999888888999999999999999999999864

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=97.30  E-value=0.00056  Score=64.37  Aligned_cols=57  Identities=35%  Similarity=0.431  Sum_probs=49.3

Q ss_pred             eEEEEecCCCCCC--CCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTAAS--EKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a~~--~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ..++++.+-.|..  ...|.+.+||+|.|+...-+|-|+|+++|+.|.||..||+-...
T Consensus       228 a~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~  286 (293)
T KOG4792|consen  228 AYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV  286 (293)
T ss_pred             hheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence            4688888876653  45699999999999999999999999999999999999987654

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=9.8e-05  Score=74.88  Aligned_cols=61  Identities=30%  Similarity=0.480  Sum_probs=52.6

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEee-eCCCCeeEEEE-CCeeeEecCCceeeccCCCCCc
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVSN  345 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~-~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p~sk  345 (351)
                      .++++|||..++.+|+++..||++.+++ ....|||+|.. .|..|.||+.||+++....++.
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~sS   66 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVASS   66 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccchh
Confidence            4789999999999999999999999885 45779999995 8999999999999987554444

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=97.27  E-value=0.052  Score=50.90  Aligned_cols=186  Identities=13%  Similarity=0.177  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 018756           46 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE  125 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~  125 (351)
                      -+++|-+||.++-+--.-.|++.-              ....+|.++..-|+--.    ...|++|+..+|++...|...
T Consensus        24 Le~~Lk~l~~~~e~lv~~r~ela~--------------~~~~f~~s~~~L~~~E~----~~~Ls~al~~la~~~~ki~~~   85 (224)
T cd07623          24 LDQQLRKLHASVESLVNHRKELAL--------------NTGSFAKSAAMLSNCEE----HTSLSRALSQLAEVEEKIEQL   85 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHHH
Confidence            456677777665444444444433              33356777777776322    246999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHH---hhhcCCC----cchHHHHHHH
Q 018756          126 QEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQ---RVREAPN----PENVAKLHAA  196 (351)
Q Consensus       126 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~---k~re~~~----~~~~~kL~~A  196 (351)
                      .+.....--..|.+||..++-  ++.+    .+-.+-.+..+.++....++.+++.   |...+.+    .+...+|..|
T Consensus        86 ~~~qa~~d~~~l~e~L~eY~r~i~svk----~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~  161 (224)
T cd07623          86 HGEQADTDFYILAELLKDYIGLIGAIK----DVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEW  161 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            999888888999999998875  2222    2222222233333333333333222   2111111    2223455555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-hH-hHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756          197 EARMQELKANMAILGKEAAAALAAIEAQQHRL-TF-QRLVAMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       197 e~Kl~elk~~m~~l~kea~~am~~ve~qqq~l-t~-~~L~~lveae~~yh~~~~~IL~~L~  255 (351)
                      +.+.+..+..+..+..-....|..++.  .|+ .+ ..|..|++.+..|..++.+.-+.+-
T Consensus       162 e~~~~~a~~~fe~is~~~k~El~rF~~--erv~dfk~~l~~~le~~i~~q~~~~~~We~~~  220 (224)
T cd07623         162 EAKVDRGQKEFEEISKTIKKEIERFEK--NRVKDFKDIIIKYLESLLNTQQQLIKYWEAFL  220 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666555555555555555555555443  221 12 4577788888888888777665543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.26  E-value=0.00025  Score=75.27  Aligned_cols=57  Identities=26%  Similarity=0.503  Sum_probs=47.6

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCC-CeeEEEE-CCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGEC-KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~-gWweG~~-~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...+|||||.+..+..|++.+|+.+.|+--..+ .|++.+. +|+ ||+|+||+.++..+
T Consensus        91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSL  149 (1157)
T KOG4278|consen   91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSL  149 (1157)
T ss_pred             ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccch
Confidence            467999999999999999999999999965544 4888775 666 99999999876543

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=97.22  E-value=0.00024  Score=77.67  Aligned_cols=55  Identities=24%  Similarity=0.439  Sum_probs=47.1

Q ss_pred             EEEEecCCCCC--------CCCCccccCCCEEEEe-eeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          285 LAEAIHPFTAA--------SEKELSLGVGDYVVVR-KVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       285 ~~~ALydf~a~--------~~~ELsf~~GD~I~Vl-~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ..+|+|||++-        .+.||.|++|++|.|+ .++.+|+|.|+++|+.|++|+|+|.++.
T Consensus      1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred             eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence            46899999863        2458999999999998 4556799999999999999999998764

>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p

Probab=97.01  E-value=0.33  Score=46.10  Aligned_cols=208  Identities=17%  Similarity=0.197  Sum_probs=123.4

Q ss_pred             HHHHHhcCCCCCCCccceecHHHHHHHHHHHHH-HhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC
Q 018756           21 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKL-YRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN   99 (351)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~   99 (351)
                      -+||||. -.|   |    |=.||+...=|-|. |..++       ++...++.++..-.--.-...-+|.++.-.|...
T Consensus         5 k~lkq~~-~p~---d----~~~el~~~rp~vk~~y~~~~-------~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E   69 (230)
T cd07625           5 KTLKQFA-PPY---D----EYTELAEFRPLVKSIYLTAQ-------DLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE   69 (230)
T ss_pred             HhhhccC-cCC---C----CCHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4799997 334   2    44688888878774 55443       3444444444443333333336777777777765


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhhHhhhhHHHHHHHHHH
Q 018756          100 NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSRMRQEAETQAVEVS  175 (351)
Q Consensus       100 ~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~rlrqe~E~~~~e~~  175 (351)
                      +    ...||+|+..+|.....+++....-..+.-..|-|||..++.-.  .+|.  -||+.     +|+=..++..=..
T Consensus        70 ~----~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~-----~re~~qAq~~~~~  140 (230)
T cd07625          70 T----HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLL-----MRELIQAQQNTKS  140 (230)
T ss_pred             c----cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            4    34699999999999999999999999999999999999887632  3342  45554     3333344443333


Q ss_pred             HHHH--hhhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh------hhH-hHHHHHHHHHHHHH
Q 018756          176 KRQQ--RVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR------LTF-QRLVAMVEGEKNYH  244 (351)
Q Consensus       176 rrq~--k~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~------lt~-~~L~~lveae~~yh  244 (351)
                      +|..  |.|-++  +|+   |+..|..-+++....-..+......-=..+.....+      -.+ .-|..++..+..|+
T Consensus       141 K~~~~~rlk~s~~i~~~---KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~e  217 (230)
T cd07625         141 KQEAARRLKAKRDINPL---KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYE  217 (230)
T ss_pred             HHHHHHHHhcCCCCChH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433  333333  344   777777777665554333332221111111111111      012 24666888888888


Q ss_pred             HHHHHHHHHhH
Q 018756          245 LRIAAILGDVE  255 (351)
Q Consensus       245 ~~~~~IL~~L~  255 (351)
                      ++....++.+.
T Consensus       218 rk~l~~lE~~r  228 (230)
T cd07625         218 RKKLSLLERIR  228 (230)
T ss_pred             HHHHHHHHhcc
Confidence            88877776643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length

Probab=96.76  E-value=0.35  Score=45.58  Aligned_cols=163  Identities=17%  Similarity=0.275  Sum_probs=102.2

Q ss_pred             hhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHh
Q 018756           83 EAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSR  162 (351)
Q Consensus        83 E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r  162 (351)
                      +-+..|+..+.-|...-.     .++..+|-.|++....+.+-++..-.-+-..|+.||..+-+.  -..+|-=-....+
T Consensus        46 Dk~D~lak~l~~yA~~E~-----~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~--cK~~r~elK~~~~  118 (219)
T PF06730_consen   46 DKGDELAKQLQDYANTEN-----PNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTI--CKHARDELKKFNK  118 (219)
T ss_pred             hhhHHHHHHHHHHHhcCC-----ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence            344567777777877533     346668999999999999999999999999999999998751  1111211112222


Q ss_pred             hhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHH
Q 018756          163 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQR-LVAMVEGEK  241 (351)
Q Consensus       163 lrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~-L~~lveae~  241 (351)
                      .|+.--.+...+    .|.|.- +|.+-..+-+|+..|...+--.....+.++..|..+|.|-- -.+.. |..||.-|.
T Consensus       119 ar~kEikq~~~L----eklr~k-~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl-~DlK~i~sdFv~iEM  192 (219)
T PF06730_consen  119 ARNKEIKQLKQL----EKLRQK-NPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKL-KDLKKIFSDFVTIEM  192 (219)
T ss_pred             HHHHHHHHHHHH----HHHHcc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            222222222222    233321 23322346667777776666666666777777777776221 12333 556999999


Q ss_pred             HHHHHHHHHHHHhHHHh
Q 018756          242 NYHLRIAAILGDVEAEM  258 (351)
Q Consensus       242 ~yh~~~~~IL~~L~~~l  258 (351)
                      .||-.+.+++..-...+
T Consensus       193 ~fHaKALEv~T~a~q~i  209 (219)
T PF06730_consen  193 VFHAKALEVYTAAYQDI  209 (219)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999887755544

Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=96.61  E-value=0.61  Score=43.40  Aligned_cols=157  Identities=15%  Similarity=0.166  Sum_probs=90.0

Q ss_pred             hhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhH
Q 018756           87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE  166 (351)
Q Consensus        87 ~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe  166 (351)
                      .+|.++.+-|.--.    +..++.++..+|++...+..........---.|.+||+.|+.-  ..-.|.+-.+=.+..+.
T Consensus        43 efa~~~~~L~~~E~----~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~--~~Svk~~~~~R~~~~~~  116 (216)
T cd07627          43 EFAETLEALSSLEL----SKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRS--IGSVRAAFAQRQKLWQY  116 (216)
T ss_pred             HHHHHHHHHHHhhc----chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            56666777776432    3479999999999999999888887777777888899888751  11122222222233333


Q ss_pred             HHHHHHHHHHHHH---hhhcCC------CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hhH-hHHHH
Q 018756          167 AETQAVEVSKRQQ---RVREAP------NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVA  235 (351)
Q Consensus       167 ~E~~~~e~~rrq~---k~re~~------~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~-lt~-~~L~~  235 (351)
                      ++....++.+.+.   |....+      ......+|+.++.+.+..+.....+++.+...|..++.  .| ..+ ..|..
T Consensus       117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~--~r~~dfk~~l~~  194 (216)
T cd07627         117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER--ERVEDFRNSVEI  194 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3444444433321   221110      11223445555555555555555565556666555543  22 112 45777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018756          236 MVEGEKNYHLRIAAIL  251 (351)
Q Consensus       236 lveae~~yh~~~~~IL  251 (351)
                      |++++..++..+.++=
T Consensus       195 ~~e~~ie~~k~~ie~W  210 (216)
T cd07627         195 YLESAIESQKELIELW  210 (216)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888887775543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=96.60  E-value=0.0012  Score=68.25  Aligned_cols=56  Identities=20%  Similarity=0.456  Sum_probs=49.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCE-EEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDY-VVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~-I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ...+.|+|+|.+..+.+|+|..||. ..+++..+..||..+.  .|..|++|+|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            3468999999999999999999999 6778888889999875  688999999999975

>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

Probab=96.53  E-value=0.45  Score=44.33  Aligned_cols=178  Identities=15%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756           66 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  145 (351)
Q Consensus        66 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  145 (351)
                      ++++-++.+...=+--.+.=+.||+++..-|..-+      .+..|...+|++++.+++==..|...++ -|+.-|.+++
T Consensus        20 ~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p------~l~~af~~~aet~k~l~kng~~Ll~al~-~f~s~l~T~~   92 (201)
T cd07660          20 SVLRLARALASQFYQMLQTQKALGDAFADLSQKSP------ELQEEFTYNAETQKLLCKNGETLLGALN-FFVSSLNTLV   92 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence            35555555555544444444589999999988754      4688888999999999987777777765 4777788888


Q ss_pred             hcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 018756          146 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ  225 (351)
Q Consensus       146 ~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qq  225 (351)
                      ++++ +|-..=...|+.-|=|+-+=+.+++.-...-+   .++...+++.+..++.+.+..+.-|=+.+.--|.-+++.-
T Consensus        93 ~kai-~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~---~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenr  168 (201)
T cd07660          93 NKTM-EDTLMTVKQYESARIEYDAYRNDLEALNLGPR---DAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENK  168 (201)
T ss_pred             Hhhc-cHHHHHHHHHHhhhHhHHHHhccHHHcccCCC---ccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            8765 33344444555555555555555543111111   1122234444555555555554444444666666666633


Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 018756          226 HRLTFQRLVAMVEGEKNYHLRIAAILGDV  254 (351)
Q Consensus       226 q~lt~~~L~~lveae~~yh~~~~~IL~~L  254 (351)
                      -++-..||.-|+.|--.||..+.++|+..
T Consensus       169 v~vm~~QL~~f~~a~~ay~sgn~~~L~~~  197 (201)
T cd07660         169 VKVMHKQLLLFHNAISAYFSGNQKQLEQT  197 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            33334789999999999999999988864

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im

>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]

Probab=96.51  E-value=0.0014  Score=65.58  Aligned_cols=56  Identities=29%  Similarity=0.442  Sum_probs=50.7

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeeccC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~~  340 (351)
                      .-++++.|.|..++||-+..||.|.|-...++-|++|.  +.|..|+||+.|+-.+..
T Consensus       264 THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~  321 (482)
T KOG3775|consen  264 THRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDG  321 (482)
T ss_pred             hhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCC
Confidence            35789999999999999999999999988899999998  489999999999988754

>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]

Probab=96.49  E-value=0.0039  Score=65.88  Aligned_cols=53  Identities=23%  Similarity=0.296  Sum_probs=43.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-E--CCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-C--KGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~--~Gk~G~FPsnYVe~  337 (351)
                      ..++|+|.+.++.+++|.|.+||+|.++.-. +|||++. +  +...|+||+|||..
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~-dgkwwi~lhrNk~~~g~fpsNFvhc   64 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIE-DGKWWILLHRNKDEDGLFPSNFVHC   64 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEeec-cceeeeeeeecccccccCcccceee
Confidence            4579999999999999999999999998765 4566655 3  34569999999944

>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]

Probab=96.26  E-value=0.0017  Score=68.62  Aligned_cols=56  Identities=25%  Similarity=0.332  Sum_probs=48.8

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~  341 (351)
                      .+.++|||.+.+..||+..+||++.|+.. .-+||.+.. .|+.||+|+|-+..+++.
T Consensus       502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  502 WVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             eeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence            68899999999999999999999998865 457999886 799999999988876653

>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes

Probab=96.25  E-value=1  Score=42.07  Aligned_cols=175  Identities=14%  Similarity=0.216  Sum_probs=110.7

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL-PKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA  143 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~-~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~  143 (351)
                      +.+++.++.++..=+--...-+.||+.++--|..-+      .+ |.+...+|+|++.+++-...|...++ -|+.-|.+
T Consensus        19 ~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~------~~a~~~f~~~~~a~r~~~k~g~~ll~~l~-~~~~~l~T   91 (203)
T cd00011          19 ESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDP------ELAGEEFGYNAEAQKLLCKNGETLLGAVN-FFVSSINT   91 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHH
Confidence            346777777776666555555699999999998865      23 78899999999999999999988886 47778899


Q ss_pred             hhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC---Ccc---hHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018756          144 MITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP---NPE---NVAKLHAAEARMQELKANMAILGKEAAAA  217 (351)
Q Consensus       144 ~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~---~~~---~~~kL~~Ae~Kl~elk~~m~~l~kea~~a  217 (351)
                      +.+++.- |-..=...|..-|-|+-+-+.+++.=-..-....   +++   .-...+.+.+||+.+|.-       +.-=
T Consensus        92 ~~~kai~-DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~D-------v~~K  163 (203)
T cd00011          92 LVTKAIE-DTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGD-------VAIK  163 (203)
T ss_pred             HHhhhcc-hHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            9988763 3333334555555555444444421100000000   000   113445556666665543       3333


Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 018756          218 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDV  254 (351)
Q Consensus       218 m~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L  254 (351)
                      |.-+++..-++-..+|..|..+-..||..+...|++.
T Consensus       164 l~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~  200 (203)
T cd00011         164 LKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT  200 (203)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3334443333334689999999999999999988874

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is

>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]

Probab=96.24  E-value=0.0048  Score=70.30  Aligned_cols=198  Identities=17%  Similarity=0.155  Sum_probs=120.7

Q ss_pred             HHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 018756           69 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA  148 (351)
Q Consensus        69 r~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~  148 (351)
                      +.+-+.|++--|....++-=|.+|...|.-.-   ++         .-...+.+...|.+|-..                
T Consensus       827 q~~~~~ia~he~ri~~i~~r~~~m~~~~~f~a---ed---------vk~~~~~L~~~~~slk~k----------------  878 (2399)
T KOG0040|consen  827 QALLAEIANHEPRIQEVTSRGNKMVEEGHFAA---ED---------VRSRLKSLNQNWESLKAK----------------  878 (2399)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHhccccc---HH---------HHHHHHHHHHHHHHHHHH----------------
Confidence            56778888999999988888888888776522   22         122234444444444322                


Q ss_pred             hhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 018756          149 PLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH  226 (351)
Q Consensus       149 ~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq  226 (351)
                        +.-|+.|-+-+.+-|++=+-+.+-+..... +|..  ++++.-+...|++.+..-++.+..+..        .++-  
T Consensus       879 --a~~r~~dle~s~q~~qy~ad~~eae~w~~e-kEpi~~stdygKdedsa~allkkhea~~~dl~a--------f~~~--  945 (2399)
T KOG0040|consen  879 --ASQRRQDLEDSLQAQQYLADANEAESWMRE-KEPIVGSTDYGKDEDSAEALLKKHEALLSDLEA--------FGDS--  945 (2399)
T ss_pred             --HHhcccchhhHHHHHHHHHHHhhHHHHhhc-cCcccccccccchhhhHHHHHHHHHHHHHHHHH--------HhHH--
Confidence              333444445555555554444443322211 2222  566667788888887777665433322        2221  


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhccCCCCCCCCCCCCCccccceEEEEecCCCCCCCCCccccCCC
Q 018756          227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD  306 (351)
Q Consensus       227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se~~r~esa~~~~~~~s~~~~~~~~~~~ALydf~a~~~~ELsf~~GD  306 (351)
                         ++.|                     +....+.++-  .+| ..       ..+..++.++|+|...++.+.+.+.||
T Consensus       946 ---i~~l---------------------r~qa~~cq~Q--~tp-v~-------~~g~~~v~alyd~q~kSprev~mKkgD  991 (2399)
T KOG0040|consen  946 ---IQAL---------------------REQANACRQQ--EAP-VE-------DVGKECVLALYDYQEKSPREVTMKKGD  991 (2399)
T ss_pred             ---HHHH---------------------HHHHHhhhcc--CCc-hh-------hHHHHHHHHHHHHHhcCHHHHHHhhhh
Confidence               1111                     1111111111  111 10       113345789999999999999999999


Q ss_pred             EEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          307 YVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       307 ~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      +++++..+.-+||.++++.+.|++|..||+.+.+-
T Consensus       992 vltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  992 VLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            99988888889999999999999999999987654

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p

Probab=96.15  E-value=0.54  Score=42.92  Aligned_cols=118  Identities=9%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhhh--hhhhh-hhhHhhhhHHHHHHHHHHHHHHhh
Q 018756          107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLED--ARHLA-QRYSRMRQEAETQAVEVSKRQQRV  181 (351)
Q Consensus       107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~--~R~L~-~dy~rlrqe~E~~~~e~~rrq~k~  181 (351)
                      .++.++-.+|..+..++...+.|...+..+|++||+.|+.=  .++-.  -|+.. .||+.+       ....      .
T Consensus        58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l-------~e~l------l  124 (185)
T cd07628          58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEEL-------SDYL------L  124 (185)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHH------H
Confidence            49999999999999999999999999999999999988751  11110  11111 123321       1111      0


Q ss_pred             hcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756          182 REAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       182 re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~~yh~~~~~IL~~  253 (351)
                              ..+++.|..+++.....       +..-+...+.. .+..+ ..|..|++.+..|.+.+.+.-+.
T Consensus       125 --------~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~-k~~elk~~l~~~a~~qi~~y~~~~~~W~~  181 (185)
T cd07628         125 --------TDEVENAKETSDAFNKE-------VLKEYPNFERI-KKQEIKDSLGALADGHIDFYQGLVEDWEK  181 (185)
T ss_pred             --------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    13455566666555554       33333333221 11112 45788999999999888665544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=96.06  E-value=0.0049  Score=67.84  Aligned_cols=57  Identities=30%  Similarity=0.386  Sum_probs=47.2

Q ss_pred             eEEEEecCCCC------CCCCCccccCCCEEEEeeeC-CCCeeEEEE-CCeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTA------ASEKELSLGVGDYVVVRKVS-PSGWSEGEC-KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a------~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~-~Gk~G~FPsnYVe~i~~  340 (351)
                      ..|.+.|+|.+      ..+.||.+..|++|.|.-.. .+|+++|++ .|+.|.+|+|||+.+.+
T Consensus       448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d  512 (1335)
T KOG3632|consen  448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD  512 (1335)
T ss_pred             ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence            35788898877      23568999999999998544 558999997 89999999999998764

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=96.01  E-value=0.0023  Score=66.57  Aligned_cols=55  Identities=20%  Similarity=0.439  Sum_probs=46.0

Q ss_pred             eEEEEecCCCCCCCC-------CccccCCCEEEEeeeCCCCeeEEEEC-----CeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEK-------ELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~-------ELsf~~GD~I~Vl~~~d~gWweG~~~-----Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||+|..+.       .|.|.+||++.|+++.|.+||.+...     +..|.+|+...+..
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer  281 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER  281 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence            468899999987654       58999999999999999999999863     56799999766543

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=95.85  E-value=1.7  Score=41.28  Aligned_cols=97  Identities=16%  Similarity=0.185  Sum_probs=66.7

Q ss_pred             CCCCccceecHHHH--HHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhc-cCCCCCCCCc
Q 018756           31 YERSDVMVIDEVEM--QRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGA-ENNQNINENI  107 (351)
Q Consensus        31 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~-e~~~~~~~~~  107 (351)
                      |.-+|..+.|....  .-+++|-+||.++-.=-.-.|+++-+..              .+|.+|-.-|. |.     ...
T Consensus        17 ~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~--------------efa~s~~~L~~~E~-----~~~   77 (234)
T cd07664          17 MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTA--------------AFAKSAAMLGNSED-----HTA   77 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHcCcc-----cch
Confidence            44455555544332  2467788888776555444555544433              45555555565 32     246


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756          108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       108 ~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      +++||..+|+....|......-....--.|-+||..++-
T Consensus        78 ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR  116 (234)
T cd07664          78 LSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIR  116 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence            999999999999999999888888888889999988875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=95.69  E-value=0.57  Score=44.84  Aligned_cols=141  Identities=11%  Similarity=0.088  Sum_probs=81.6

Q ss_pred             hhHHHhhhh---ccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhhh--hh-hhhhh
Q 018756           88 LSEDCCRYG---AENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLED--AR-HLAQR  159 (351)
Q Consensus        88 l~e~~~kyg---~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~--~R-~L~~d  159 (351)
                      +.+....||   +.|+ +.+ ..++.+|-.+|.++..++..-+.+...+..+|++||+.|+.=  +++-.  -| .+..+
T Consensus        87 y~~~~~~fgk~~~lws-~~E-~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~  164 (243)
T cd07666          87 YFEELKEYGPIYTLWS-ASE-EELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAE  164 (243)
T ss_pred             HHHHHHHHHHHHHHHh-ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555   4666 334 459999999999999999999999999999999999998752  12211  01 23334


Q ss_pred             hHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHH
Q 018756          160 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVE  238 (351)
Q Consensus       160 y~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lve  238 (351)
                      |++++.-......+            +.....+++.+++|.++....       +..-|...+.+-.+ .+ +-+..|++
T Consensus       165 le~k~e~l~k~~~d------------r~~~~~ev~~~e~kve~a~~~-------~k~e~~Rf~~~k~~-D~k~~~~~yae  224 (243)
T cd07666         165 LDSKVEALANKKAD------------RDLLKEEIEKLEDKVECANNA-------LKADWERWKQNMQT-DLRSAFTDMAE  224 (243)
T ss_pred             HHHHHHHHHhhhhh------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            44432222221111            111223455555555555333       33334433332111 12 45777888


Q ss_pred             HHHHHHHHHHHH
Q 018756          239 GEKNYHLRIAAI  250 (351)
Q Consensus       239 ae~~yh~~~~~I  250 (351)
                      .+..|++++...
T Consensus       225 ~~i~~~~~~~~~  236 (243)
T cd07666         225 NNISYYEECLAT  236 (243)
T ss_pred             HHHHHHHHHHHH
Confidence            899998887654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6

Probab=95.63  E-value=2.1  Score=40.49  Aligned_cols=148  Identities=20%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             hhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhH
Q 018756           87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE  166 (351)
Q Consensus        87 ~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe  166 (351)
                      .+|.++.--|+-     +++.|++++..+|+..-.|.++......+---.|-|||+-++.-  ..-++-+-++==|.-++
T Consensus        63 ~fs~al~~L~~~-----E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~--~~A~K~~l~rR~ral~~  135 (219)
T cd07621          63 KISAALTQLATS-----EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRD--TQAAKDLLYRRLRCLAN  135 (219)
T ss_pred             HHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            444444444442     44689999999999999998877777666666888999887751  11122222211122334


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHH
Q 018756          167 AETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYH  244 (351)
Q Consensus       167 ~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh  244 (351)
                      .|.-...+.+++.+.         .++.+||.+.++....+..+++-+...|...+.  +|+. + ..|+.|.|.+..--
T Consensus       136 ~q~A~k~L~KaR~k~---------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~--~Rv~~fk~~lve~aE~~ik~A  204 (219)
T cd07621         136 YENANKNLEKARAKN---------KDVHAAEAAQQEACEKFESMSESAKQELLDFKT--RRVAAFRKNLVELAELEIKHA  204 (219)
T ss_pred             HHHHHHHHHHhHhch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555542         244444444444444444444446666666554  4422 2 35666766665544


Q ss_pred             HHHHHHHH
Q 018756          245 LRIAAILG  252 (351)
Q Consensus       245 ~~~~~IL~  252 (351)
                      +...++|.
T Consensus       205 k~~~~~l~  212 (219)
T cd07621         205 KAQIQLLK  212 (219)
T ss_pred             HHHHHHHH
Confidence            44444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=95.49  E-value=0.43  Score=52.71  Aligned_cols=182  Identities=18%  Similarity=0.297  Sum_probs=118.0

Q ss_pred             ecHHHHHHH---HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHH
Q 018756           39 IDEVEMQRH---QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY  115 (351)
Q Consensus        39 ~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~  115 (351)
                      +|+.|...|   ..|+|++-+-.++...++++|-.-|-|..       +    -.+-..+|   +   .+...|-++..|
T Consensus        23 ~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~-------~----~~d~~~~~---~---~~~~~~~~l~~f   85 (785)
T KOG0521|consen   23 LDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGK-------G----LKDLFSLG---Q---DEEVISETLQKF   85 (785)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHH-------H----HHHHHHhc---c---CchhhhhHHHHH
Confidence            477777655   57888888888888888888777766531       2    12224444   2   234578889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHH
Q 018756          116 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLH  194 (351)
Q Consensus       116 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~  194 (351)
                      ..+..++......|...+...+..||..++.+|+.++ +-+...+++..++++.-.....+..-+.| +. .++....|.
T Consensus        86 s~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v-~~~kk~f~ka~~~~d~a~~k~~~l~k~~~-~~~~~e~~~~l~  163 (785)
T KOG0521|consen   86 SKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEV-KELKKLFEKASEEYDLALVKYSRLPKKRR-SKVKTEVEEELA  163 (785)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhHHHHHHHhhHHHHHHHhhhhhhccc-cchhHHHHHHHH
Confidence            9999999999999999999999999999999999876 33355666777888776666654433322 22 455445666


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHH
Q 018756          195 AAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLR  246 (351)
Q Consensus       195 ~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~  246 (351)
                      .+..+|+-..--       ...+++.++...+-.-+.-+..+++|+..|+++
T Consensus       164 ~~r~~f~~~~~~-------y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~  208 (785)
T KOG0521|consen  164 AARRKFQLTALD-------YVLALNVLQAKKQFEILETLLGFMHAQINFFKQ  208 (785)
T ss_pred             HHHHHHHHHHHH-------HHHhhhhhhcccchHHHHHHHHHHHhccchhcc
Confidence            555565544332       222222222211111145567777777777643

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=95.44  E-value=0.0023  Score=59.59  Aligned_cols=52  Identities=27%  Similarity=0.444  Sum_probs=45.5

Q ss_pred             EEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEECCeeeEecCCceee
Q 018756          286 AEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      +.++++|.+...+||+|.+||.+.+++.. +.+|+..+..|..|++|.||...
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~   55 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM   55 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence            56789999999999999999999888754 44899999999999999999843

>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53

Probab=95.41  E-value=2.5  Score=40.15  Aligned_cols=174  Identities=14%  Similarity=0.200  Sum_probs=96.6

Q ss_pred             HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756           67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus        67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      |.+++.|++.++.--.+...++||-       -..+...-.||.||+.+.+.++++....+.+...+-.++|.||..=+.
T Consensus        34 Y~kal~a~~~a~~~y~dAl~Kige~-------A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E  106 (232)
T cd07646          34 YEKALASVTFAAKGYFDALVKMGEL-------ASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVE  106 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667766665555555555443       221111235999999999999999999999999999999999876655


Q ss_pred             cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHH------hhhcCCCcchHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHH
Q 018756          147 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQ------RVREAPNPENVAKLHAAEARMQELKA-NMAILGKEAAAALA  219 (351)
Q Consensus       147 ~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~------k~re~~~~~~~~kL~~Ae~Kl~elk~-~m~~l~kea~~am~  219 (351)
                          -|.+.+..-.|+-..|+-..+..++|-+.      |.+..+  .+..+...-|.++-+.-+ .-..|..-......
T Consensus       107 ----~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~--k~~~ky~~ke~q~~~~~~~~q~ele~f~~~~~k  180 (232)
T cd07646         107 ----LDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGS--KNPQKYSDKELQYIEAISNKQGELENYVSDGYK  180 (232)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                35566665566655555555555544222      221211  111122222222222111 11122222222222


Q ss_pred             H-HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHH
Q 018756          220 A-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       220 ~-ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~  253 (351)
                      . +-+.-.|.+  +.+-+++......||.....+|.+
T Consensus       181 ~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~  217 (232)
T cd07646         181 TALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQ  217 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 212234444  356667777788899888888765

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

Probab=95.38  E-value=2.5  Score=39.92  Aligned_cols=132  Identities=15%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhh-hhhhhhhhHhhhhHHHHHHHHHHHHHHhh
Q 018756          105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRV  181 (351)
Q Consensus       105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~-~R~L~~dy~rlrqe~E~~~~e~~rrq~k~  181 (351)
                      .+.|++|+..+|+..-.|..+......+---.|.|||+-++.  ++.++- .||+     |.-+..|.-...+++++.+.
T Consensus        75 ~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~-----ral~~~e~A~~~L~KaR~k~  149 (218)
T cd07663          75 PTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRA-----RALADYENSNKALDKARLKS  149 (218)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhh
Confidence            346999999999999999998888888888889999998875  122221 1221     12233344444454554442


Q ss_pred             hcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHHHHHHHHHH
Q 018756          182 REAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILG  252 (351)
Q Consensus       182 re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh~~~~~IL~  252 (351)
                      ++  .++...++++|+.+|+++-..       +...|...+.  +|+. + ..|+.+.+.+..--+.....|.
T Consensus       150 ke--v~~aE~~~~ea~~~Fe~IS~~-------~k~El~rF~~--~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~  211 (218)
T cd07663         150 KD--VKQAEAHQQECCQKFEKLSES-------AKQELISFKR--RRVAAFRKNLIEMTELEIKHAKNNVSLLQ  211 (218)
T ss_pred             hh--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22  222334555566666555554       6666655554  3422 2 3566676666554444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

Probab=95.26  E-value=2.2  Score=39.58  Aligned_cols=146  Identities=10%  Similarity=0.085  Sum_probs=79.9

Q ss_pred             hhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhhHh
Q 018756           88 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSR  162 (351)
Q Consensus        88 l~e~~~kyg~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~r  162 (351)
                      |+.+..-||.-... +..++.+|.++-.+|.++..+...-+.+... ..+|++||+.|..=.  ++-.  -|.+.     
T Consensus        47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~-----  120 (201)
T cd07622          47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLFFADSLRAVCKKHELL-----  120 (201)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            34444445543221 2334579999999998888888766666655 489999999886421  1111  22222     


Q ss_pred             hhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHH
Q 018756          163 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEK  241 (351)
Q Consensus       163 lrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~  241 (351)
                       ..++|.....+.++...        ...+++.|...++.....       +..-+...+. +.+..+ ..|.+|++.+.
T Consensus       121 -q~~~e~~~~~L~~k~~~--------l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~-~K~~dlk~~l~~~A~~qi  183 (201)
T cd07622         121 -QYDLEKAEDALANKKQQ--------GEEAVKEAKDELNEFVKK-------ALEDVERFKK-QKVRDLKEILISYAKLQI  183 (201)
T ss_pred             -HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence             12223333333333221        123444454444443332       4333333332 122223 45888999999


Q ss_pred             HHHHHHHHHHHHhHH
Q 018756          242 NYHLRIAAILGDVEA  256 (351)
Q Consensus       242 ~yh~~~~~IL~~L~~  256 (351)
                      .|.+.+.+.-+.+..
T Consensus       184 ~~~~~~~~~W~~~~~  198 (201)
T cd07622         184 KLAKKGLQTWTNIKE  198 (201)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999998877666554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=95.16  E-value=1.8  Score=46.33  Aligned_cols=29  Identities=10%  Similarity=0.214  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHhHHHhhh
Q 018756          232 RLVAMVEGEKNY-------HLRIAAILGDVEAEMVS  260 (351)
Q Consensus       232 ~L~~lveae~~y-------h~~~~~IL~~L~~~l~s  260 (351)
                      -|.+|+...+.|       |+......++|+..++.
T Consensus       198 pllafl~slf~f~h~g~el~qDF~pfk~qlq~s~Qn  233 (812)
T KOG1451|consen  198 PLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQN  233 (812)
T ss_pred             HHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHH
Confidence            456666666555       35555566666666554

>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

Probab=95.02  E-value=3.2  Score=39.04  Aligned_cols=174  Identities=17%  Similarity=0.196  Sum_probs=108.6

Q ss_pred             HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756           66 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  145 (351)
Q Consensus        66 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  145 (351)
                      -+++=++.+...=|--+..=..|||.++--|.--+    ...+..|...+|++++.|++-=..|...++ -|+.-|++++
T Consensus        20 ~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~----~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~s~l~T~l   94 (215)
T cd07659          20 GLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREP----QPAASEAFTKFGEAHRSIEKFGIELLKTLK-PMLSDLGTYL   94 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----ChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHHHHHHHHH
Confidence            35666666666666666666678888888888644    235888999999999999999999999887 4788899999


Q ss_pred             hcChhhhhhhhh-------hhhHhhhhHHHHHHHHHHHHHHhhhcC------CCcch---HHHHHHHHHHHHHHHHHHHH
Q 018756          146 TGAPLEDARHLA-------QRYSRMRQEAETQAVEVSKRQQRVREA------PNPEN---VAKLHAAEARMQELKANMAI  209 (351)
Q Consensus       146 ~~~~~e~~R~L~-------~dy~rlrqe~E~~~~e~~rrq~k~re~------~~~~~---~~kL~~Ae~Kl~elk~~m~~  209 (351)
                      +++.- |.+-=.       +.|+.-|-++|....+- ..-+..-|.      .|.+-   ..--+.+.+||+.+++-   
T Consensus        95 ~Kaip-DT~lTikkY~~ar~EY~ayc~kvkEmd~ee-~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~D---  169 (215)
T cd07659          95 NKAIP-DTKLTIKKYADVKFEYLSYCLKVKEMDDEE-YSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQD---  169 (215)
T ss_pred             HhhCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---
Confidence            98863 222222       34555555554432211 000000000      01110   01115677777777764   


Q ss_pred             hhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018756          210 LGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       210 l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~  253 (351)
                          +.-=|.-+|+.-=++-..||..|+.|--.||..+.+++..
T Consensus       170 ----V~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~~  209 (215)
T cd07659         170 ----VLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLKE  209 (215)
T ss_pred             ----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                3233444555322233578999999999999999888653

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=94.77  E-value=0.0088  Score=64.23  Aligned_cols=57  Identities=23%  Similarity=0.501  Sum_probs=49.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEE--ECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGE--CKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~--~~Gk~G~FPsnYVe~i~  339 (351)
                      ...|.++|.|.+.+++++++.+|+++.+++.. .+||-+++  ++|..|+||.+|++.+.
T Consensus       578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  578 IRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             ccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            44689999999999999999999999988644 67999998  68999999999998754

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=94.49  E-value=4.6  Score=38.49  Aligned_cols=81  Identities=14%  Similarity=0.200  Sum_probs=56.9

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  127 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~  127 (351)
                      ++|-+||.++-+=-.-.|++.-+...              +|.++---|.--    ....|++||..+|+....|....+
T Consensus        36 ~qLk~L~k~~~~lv~~r~eLa~~~~e--------------Fa~s~~~L~~~E----~~~~Ls~als~laev~~~i~~~~~   97 (234)
T cd07665          36 QRLRKLHAVVETLVNHRKELALNTAL--------------FAKSLAMLGSSE----DNTALSRALSQLAEVEEKIEQLHQ   97 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHH
Confidence            45667776665544444555544443              333333334322    235799999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhh
Q 018756          128 DFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       128 ~l~~~~~~~~~~PL~~~~~  146 (351)
                      .-....--+|-+||..++-
T Consensus        98 ~qa~qd~~~f~e~l~eYiR  116 (234)
T cd07665          98 EQANNDFFLLAELLADYIR  116 (234)
T ss_pred             HHHHHHHHHHhhhHHHHHH
Confidence            9999999999999988875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1

Probab=94.44  E-value=4.6  Score=38.25  Aligned_cols=174  Identities=13%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  144 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  144 (351)
                      |.|.+++-|++.++.--.+++-++||--.-    .+   ..-.||.+|+.+.+.++++.+..+.....+--.+|.||-.=
T Consensus        30 k~Y~KA~~a~~~A~~~y~dal~Kige~A~~----s~---~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k  102 (226)
T cd07645          30 KNYEKAVNAMVLAGKAYYDGVAKIGEIAAV----SP---VSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERK  102 (226)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889998888888887777765443    11   12359999999999999999988888888888999998766


Q ss_pred             hhcChhhhhhhhhhhhHhhhhH-------HHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHH-HHHHHHHHHhhHHHH
Q 018756          145 ITGAPLEDARHLAQRYSRMRQE-------AETQAVEVSKRQQRVREAP-NPENVAKLHAAEARM-QELKANMAILGKEAA  215 (351)
Q Consensus       145 ~~~~~~e~~R~L~~dy~rlrqe-------~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl-~elk~~m~~l~kea~  215 (351)
                      +..|.    +-+..-.++--.|       +|....+..+ ..+.+..+ |+.   |-..=|..+ +.+.+.-..|..-..
T Consensus       103 ~elD~----kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK-~RRKsqg~kn~~---kye~Ke~~~~e~~~~~q~el~~f~~  174 (226)
T cd07645         103 TDLDV----KYMTATLKRYQTEHKNKLDSLEKSQADLKK-IRRKSQGRRNAS---KYEHKENEYLETVTSRQSDIQKFIA  174 (226)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCCCch---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65443    3333222222223       3444444322 22222222 231   211111111 111121222332233


Q ss_pred             HHHHH-HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHH
Q 018756          216 AALAA-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       216 ~am~~-ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~  253 (351)
                      .+... +-+.-.|.+  +..=+++......||..+..+|.+
T Consensus       175 ~~~k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~  215 (226)
T cd07645         175 DGCREALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNS  215 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33222 222234444  345566777778889888888765

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of

>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins

Probab=94.37  E-value=4  Score=38.00  Aligned_cols=42  Identities=17%  Similarity=0.078  Sum_probs=31.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756          104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  145 (351)
Q Consensus       104 ~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  145 (351)
                      +...|.+|+...|+++..|+++.++--..=-..|.|-|..+.
T Consensus        63 ~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~  104 (199)
T cd07626          63 TSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYK  104 (199)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence            345799999999999999998877766655555555554443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=93.61  E-value=6.7  Score=37.19  Aligned_cols=46  Identities=22%  Similarity=0.134  Sum_probs=40.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh
Q 018756          105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL  150 (351)
Q Consensus       105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~  150 (351)
                      .++|..++-.+-.....|++....|...|...+..||+.+..+-.+
T Consensus        55 ~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k  100 (233)
T cd07649          55 EGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKK  100 (233)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468889888888889999999999999999999999999986443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins

Probab=93.34  E-value=6.7  Score=36.34  Aligned_cols=174  Identities=14%  Similarity=0.088  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 018756           46 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE  125 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~  125 (351)
                      -|.+|-+++..+-.--.-+|++.-+              ...+|.++..-|+.-.  +....|++++..+|+..-.+.+.
T Consensus        16 l~~~lk~~~~~~~~lv~~rk~la~~--------------~~~fs~al~~L~~~E~--~~~~~l~~~l~~lse~~e~i~~~   79 (198)
T cd07630          16 LSANMKEAAEKFLKIVNTEQRLANA--------------LGHLSSSLQLCVGLDE--ASVVALNRLCTKLSEALEEAKEN   79 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccc--cchHhHHHHHHHHHHHHHHHHHH
Confidence            3566666666554433333433332              2234444444444211  01117899999999999999998


Q ss_pred             HHHHHHHHHhhhhhHHHHhhh--cChhhh-hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 018756          126 QEDFNRLLSSQVLDPLRAMIT--GAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE  202 (351)
Q Consensus       126 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~-~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~e  202 (351)
                      .+....+---.|-+||+-+..  ++.++- .||.     +..++++.-...++|++.+.++  .++  .+.+.|+.+|++
T Consensus        80 ~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~-----~~~~~~~~a~k~l~Kar~~k~~--~ae--~~~~~a~~~fe~  150 (198)
T cd07630          80 IEVVAGNNENTLGLTLDLYSRYSESEKDMLFRRT-----CKLIEFENASKALEKAKPQKKE--QAE--EAKKKAETEFEE  150 (198)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHhhHH--HHH--HHHHHHHHHHHH
Confidence            888888888899999988764  222221 2222     2233333344444443333222  122  555566666766


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756          203 LKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       203 lk~~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh~~~~~IL~~  253 (351)
                      +-+.       +...|..++.  +|+. + ..|..|++.+..--....+++..
T Consensus       151 iS~~-------~k~EL~rF~~--~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~  194 (198)
T cd07630         151 ISSL-------AKKELERFHR--QRVLELQSALVCYAESQIKNAKEAAAVLTK  194 (198)
T ss_pred             HHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6665       4444444433  3322 2 45777888877766666665543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.22  E-value=0.18  Score=36.20  Aligned_cols=36  Identities=33%  Similarity=0.585  Sum_probs=29.3

Q ss_pred             cccCCCEEEEeeeCCCC-eeEE-EECCeeeEecCCcee
Q 018756          301 SLGVGDYVVVRKVSPSG-WSEG-ECKGKAGWFPSANVE  336 (351)
Q Consensus       301 sf~~GD~I~Vl~~~d~g-WweG-~~~Gk~G~FPsnYVe  336 (351)
                      .+..|+.|.|+.....+ |+.. ..+|..||++..||+
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            46789999998776555 9999 569999999999985

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=91.95  E-value=0.14  Score=55.72  Aligned_cols=49  Identities=29%  Similarity=0.258  Sum_probs=39.7

Q ss_pred             EecCCCCCCCCCccccCCCEEEEeeeCCC-CeeEEE--ECCeeeEecCCcee
Q 018756          288 AIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGE--CKGKAGWFPSANVE  336 (351)
Q Consensus       288 ALydf~a~~~~ELsf~~GD~I~Vl~~~d~-gWweG~--~~Gk~G~FPsnYVe  336 (351)
                      +--+|+...++.|.|..||.|+|++.... .||.|.  ++++.|.||.+-|.
T Consensus       379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            33345567889999999999999986654 599996  48999999998877

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

Probab=91.64  E-value=12  Score=35.34  Aligned_cols=176  Identities=13%  Similarity=0.131  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 018756           46 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE  125 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~  125 (351)
                      -|++|.+|+.++-.--.-=|++.-.              ...+|.++..-|+.     +...|++++..+++....|.++
T Consensus        35 ~~~~Lk~~~~~~e~l~~~rk~la~~--------------~~~~s~sl~~L~~~-----e~t~L~~~l~~laev~eki~~l   95 (218)
T cd07662          35 YHNRVKDSSAKSDRMTRSHKSAADD--------------YNRIGSSLYTLGTQ-----DSTDICKFFLKVSELFDKTRKI   95 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccc-----cchhHHHHHHHHHHHHHHHHHH
Confidence            5788888887765443333333221              12344444444543     2347999999999998888876


Q ss_pred             HHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 018756          126 QEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKA  205 (351)
Q Consensus       126 ~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~  205 (351)
                      ......+=--.+.|-|+-++.  ...-++-|-++==|.-++.|.-.-.+++++.+-+|  ..+...++++|+.+|+++-.
T Consensus        96 ~~~~A~~e~l~L~e~L~~Y~r--~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~ke--v~~aE~~~~~a~~~Fe~IS~  171 (218)
T cd07662          96 EARVAADEDLKLSDLLKYYLR--ESQAAKDLLYRRSRSLVDYENANKALDKARAKNKD--VLQAETTQQLCCQKFEKISE  171 (218)
T ss_pred             HHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHH
Confidence            666544433344555554432  01112222222112334455555556666555332  33334677777778777766


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756          206 NMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       206 ~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh~~~~~IL~~  253 (351)
                      .       +...|...+.  .|+. + ..|+.++|.+..--+...++|..
T Consensus       172 ~-------aK~El~rF~~--~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~  212 (218)
T cd07662         172 S-------AKQELIDFKT--RRVAAFRKNLVELAELELKHAKGNLQLLQS  212 (218)
T ss_pred             H-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5       5555555544  3422 2 35666776665544444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=91.48  E-value=12  Score=34.99  Aligned_cols=41  Identities=12%  Similarity=0.161  Sum_probs=37.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 018756          107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG  147 (351)
Q Consensus       107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~  147 (351)
                      .|..|+..+=.....|++....|...|.+++.+||..+...
T Consensus        57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~   97 (236)
T cd07651          57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASS   97 (236)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899988888889999999999999999999999998764

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=91.07  E-value=15  Score=35.24  Aligned_cols=128  Identities=14%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhh-----hhhhhhhhhHhhhhHHHHHHHHHHH
Q 018756          104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLE-----DARHLAQRYSRMRQEAETQAVEVSK  176 (351)
Q Consensus       104 ~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e-----~~R~L~~dy~rlrqe~E~~~~e~~r  176 (351)
                      -...++..|-.|+.++.+.+..=++|...+.++|+++|+.|+.=  +++-     |-.++  ||+.+-   |..    ..
T Consensus       101 lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~--d~E~l~---E~l----~~  171 (240)
T cd07667         101 LEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQA--EYEAKL---EAV----AL  171 (240)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHH----HH
Confidence            34568999999999999999999999999999999999998752  1221     22233  344321   222    22


Q ss_pred             HHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756          177 RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       177 rq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~~yh~~~~~IL~~  253 (351)
                      |..+            ++.-+.+.+++...+...+++...-+...+. +.+..+ ..|..|.+....|++.+.++=+.
T Consensus       172 rre~------------~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~-~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~  236 (240)
T cd07667         172 RKEE------------RPKVPTDVEKCQDRVECFNADLKADMERWQN-NKRQDFRQLLMGMADKNIQYYEKCLTAWES  236 (240)
T ss_pred             HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3233            3333455666666665555556555554443 222223 46888999999999988766543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=90.90  E-value=15  Score=34.85  Aligned_cols=90  Identities=18%  Similarity=0.303  Sum_probs=63.8

Q ss_pred             HHHHhhhhchhhhhHHHHHHhHH--HhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 018756           51 EKLYRSTRGTKDFQRDLVKVAEV--FTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQED  128 (351)
Q Consensus        51 ~~~~~~~~~~~~~q~~~vr~~~~--~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~  128 (351)
                      +.|+.-|+-|..|=+||+..+.-  -|---|     +..|..-..||....+ ... ++|..|...+......++.....
T Consensus         8 ~~l~~~~~~G~~~ckel~~f~kERa~IE~~Y-----AK~L~kLa~k~~k~~~-~~~-Gtl~~aw~~~~~e~e~~a~~H~~   80 (239)
T cd07658           8 EELRRYVKQGGDFCKELATVLQERAELELNY-----AKGLSKLSGKLSKASK-SVS-GTLSSAWTCVAEEMESEADIHRN   80 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhc-cCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888888887777642  222222     2233333445533333 223 47999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHhhhc
Q 018756          129 FNRLLSSQVLDPLRAMITG  147 (351)
Q Consensus       129 l~~~~~~~~~~PL~~~~~~  147 (351)
                      |...|...++.||+.++..
T Consensus        81 la~~L~~ev~~~l~~~~~~   99 (239)
T cd07658          81 LGSALTEEAIKPLRQVLDE   99 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999885

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=90.60  E-value=16  Score=34.74  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC------hhhhhhhhhhhhHhhhhHHHH
Q 018756          104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDARHLAQRYSRMRQEAET  169 (351)
Q Consensus       104 ~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~~dy~rlrqe~E~  169 (351)
                      .+|....+...+=.....++..+..+..++..++++||..|...-      ..+++..|..++++...+++.
T Consensus        59 ~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k  130 (237)
T cd07657          59 QGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEK  130 (237)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777788899999999999999999999988732      123466666655555444433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p

Probab=90.58  E-value=13  Score=33.89  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=37.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756          106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      ..|+.++-.+|.++-...-.=+.|...+..+|.+||+.|+.
T Consensus        59 ~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~   99 (187)
T cd07629          59 SELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ   99 (187)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            35899999999999999999999999999999999999876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2

Probab=90.38  E-value=16  Score=34.40  Aligned_cols=76  Identities=8%  Similarity=0.090  Sum_probs=52.7

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA  143 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~  143 (351)
                      +.|.+++-|+..++.--.+++.++||--.    +.    .+| .||.+|+++.++++++-..-+.....+--.+|-||-.
T Consensus        30 k~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~----~s----~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEk  101 (215)
T cd07644          30 NNYLRAFHALSEAAEVYFSAIAKIGEQAL----QS----LTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDK  101 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888999999888888888777766432    22    233 5999999999999888766555555555566666544


Q ss_pred             hhhcC
Q 018756          144 MITGA  148 (351)
Q Consensus       144 ~~~~~  148 (351)
                      =...|
T Consensus       102 k~elD  106 (215)
T cd07644         102 NTKLD  106 (215)
T ss_pred             HHHHh
Confidence            44433

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=89.28  E-value=19  Score=33.72  Aligned_cols=41  Identities=20%  Similarity=0.135  Sum_probs=36.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756          106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      +++..|.-.+-.....++.....+..++.+++++||..++.
T Consensus        61 ~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~  101 (251)
T cd07653          61 FSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS  101 (251)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778887888788999999999999999999999999986

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=88.02  E-value=26  Score=33.65  Aligned_cols=113  Identities=16%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             HHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC-CCCC--CchhHHHHHHHHHHHHHHHHHHH
Q 018756           52 KLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ-NINE--NILPKAAAIYGDARKHVEKEQED  128 (351)
Q Consensus        52 ~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~-~~~~--~~~~~a~~~~g~a~~~~~~~~~~  128 (351)
                      .|..-|.-|-.|=.||...+.=-...=   -|-+.+|..-+.||..--.. +..+  .++-.|...+-..+..++..++.
T Consensus         9 ~l~k~~~~Gi~~~~~i~~f~kERa~IE---keYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~   85 (253)
T cd07676           9 NLEKHTQWGIEVLEKYIKFVKERTEIE---LSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEV   85 (253)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443221111   12233566667777554210 0011  12334555544555788999999


Q ss_pred             HHHHHHhhhhhHHHHhhhcC------hhhhhhhhhhhhHhhhhHH
Q 018756          129 FNRLLSSQVLDPLRAMITGA------PLEDARHLAQRYSRMRQEA  167 (351)
Q Consensus       129 l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~~dy~rlrqe~  167 (351)
                      +..+|..+|++||..++..-      ...+|+++....++...++
T Consensus        86 ~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~l  130 (253)
T cd07676          86 ISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQL  130 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888721      1223555555444444433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=87.72  E-value=0.88  Score=33.24  Aligned_cols=35  Identities=31%  Similarity=0.495  Sum_probs=28.5

Q ss_pred             cccCCCEEEEeeeCCCCeeEEEEC-CeeeEecCCce
Q 018756          301 SLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANV  335 (351)
Q Consensus       301 sf~~GD~I~Vl~~~d~gWweG~~~-Gk~G~FPsnYV  335 (351)
                      .+..|+.+.++...+.+|+..... |..||+|..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            467899999987755589999875 99999987765

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=87.62  E-value=0.95  Score=36.90  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             CCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeec
Q 018756          296 SEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  338 (351)
Q Consensus       296 ~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i  338 (351)
                      ...+|.+++|+.+.|+...+.+-|-++. .|+.||+|.+++-..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence            4568999999999999999888888886 899999999988544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.20  E-value=0.61  Score=43.56  Aligned_cols=38  Identities=21%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             cccCCCEEEEeeeCC-CCeeEEEE-CCeeeEecCCceeec
Q 018756          301 SLGVGDYVVVRKVSP-SGWSEGEC-KGKAGWFPSANVEKR  338 (351)
Q Consensus       301 sf~~GD~I~Vl~~~d-~gWweG~~-~Gk~G~FPsnYVe~i  338 (351)
                      ++..|+.+.|+...+ .||+..+. +|+.||+|..|+...
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            577899999998665 68999885 899999999998754

>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]

Probab=86.31  E-value=37  Score=33.97  Aligned_cols=165  Identities=16%  Similarity=0.234  Sum_probs=95.4

Q ss_pred             HhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh---
Q 018756           74 FTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL---  150 (351)
Q Consensus        74 ~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~---  150 (351)
                      +.-.-|+..+.-..+|++.|--|.--+    ...-+.|..-||+.++.+++---.+..-++ -++--|+++.+++.-   
T Consensus       158 ml~a~y~lsqt~k~FGd~F~~i~vhEp----Qq~AsEAF~~Fgd~HR~ieK~g~~~~k~ik-pmlsDL~tYlnkaiPDTr  232 (429)
T KOG3651|consen  158 MLQAQYKLSQTQKEFGDIFCDIAVHEP----QQTASEAFSSFGDKHRMIEKKGSESAKPIK-PMLSDLQTYLNKAIPDTR  232 (429)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhccCc----chhHHHHHHHHHHHHHHHHHhccchhhhhh-HHHHHHHHHHhccCCcch
Confidence            334445666666678888888887666    235677888999998888875555544444 455668888888753   


Q ss_pred             -hhhhhhhhhhHhhhhHHHHHHHHHHHH----------HHh-hhcCC-Ccch---HHHHHHHHHHHHHHHHHHHHhhHHH
Q 018756          151 -EDARHLAQRYSRMRQEAETQAVEVSKR----------QQR-VREAP-NPEN---VAKLHAAEARMQELKANMAILGKEA  214 (351)
Q Consensus       151 -e~~R~L~~dy~rlrqe~E~~~~e~~rr----------q~k-~re~~-~~~~---~~kL~~Ae~Kl~elk~~m~~l~kea  214 (351)
                       -+-|-||-.|.=     -+-++.|..=          |.- -|=+. |++-   ..=-+.|.+||..++.-       .
T Consensus       233 LTikkYlDvKfeY-----LSYCLKvKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~D-------V  300 (429)
T KOG3651|consen  233 LTIKKYLDVKFEY-----LSYCLKVKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDD-------V  300 (429)
T ss_pred             hhhHHhhhhhHHH-----HHHHHhhhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHH-------H
Confidence             234445544332     1222222000          000 00011 3331   01114577777766653       3


Q ss_pred             HHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756          215 AAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  255 (351)
Q Consensus       215 ~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~  255 (351)
                      ..-|.-+++..-+--.++|..|+...-.||+.+++||+++.
T Consensus       301 leKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~  341 (429)
T KOG3651|consen  301 LEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKERI  341 (429)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33354444432222257899999999999999999998743

>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=84.90  E-value=0.47  Score=47.49  Aligned_cols=36  Identities=19%  Similarity=0.465  Sum_probs=30.4

Q ss_pred             CCCccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecC
Q 018756          297 EKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPS  332 (351)
Q Consensus       297 ~~ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPs  332 (351)
                      ....+|...|+|.|-++-+++||-|++   .+..||+|+
T Consensus        79 g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   79 GHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             CceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            335789999999999999999999995   456699996

>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins

Probab=84.14  E-value=38  Score=31.97  Aligned_cols=40  Identities=13%  Similarity=0.173  Sum_probs=34.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756          106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      ++|..|...+=.....|+..+..|..+|. ++.+||..|..
T Consensus        61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~  100 (234)
T cd07652          61 GSFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAK  100 (234)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            46888988888888999999999999995 79999998876

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=82.86  E-value=0.56  Score=49.88  Aligned_cols=44  Identities=34%  Similarity=0.541  Sum_probs=34.7

Q ss_pred             CccccCCCEEEEeeeC-CCCeeEEEE--CCeeeEecCCceeeccCCC
Q 018756          299 ELSLGVGDYVVVRKVS-PSGWSEGEC--KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       299 ELsf~~GD~I~Vl~~~-d~gWweG~~--~Gk~G~FPsnYVe~i~~~p  342 (351)
                      -|.+..||++.++.-. ...||+|..  .+..||||++-|.+.+..|
T Consensus       626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp  672 (865)
T KOG2996|consen  626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP  672 (865)
T ss_pred             ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence            4788999999877543 457999996  5678999999998766555

>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes

Probab=82.04  E-value=36  Score=30.13  Aligned_cols=89  Identities=8%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC
Q 018756          106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP  185 (351)
Q Consensus       106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~  185 (351)
                      ++|..|...+...+..++.....|...+...+.+|++.+.. ..++.......+..++.+++.....++.+   |.    
T Consensus        53 ~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~-~~~~~rk~~~~~~~~~~k~~~~~~~~~~k---k~----  124 (191)
T cd07610          53 TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKE-DKEQARKKELAEGEKLKKKLQELWAKLAK---KA----  124 (191)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh----
Confidence            57999999999999999999999999999999999998877 32332344445555555555444444433   21    


Q ss_pred             CcchHHHHHHHHHHHHHHHHH
Q 018756          186 NPENVAKLHAAEARMQELKAN  206 (351)
Q Consensus       186 ~~~~~~kL~~Ae~Kl~elk~~  206 (351)
                          ..+...+..++...+..
T Consensus       125 ----~~~y~~~~~~~~~~~~~  141 (191)
T cd07610         125 ----DEEYREQVEKLNPAQSE  141 (191)
T ss_pred             ----HHHHHHHHHHHHHHHHH
Confidence                13555555555555444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=81.26  E-value=2.9  Score=30.11  Aligned_cols=35  Identities=26%  Similarity=0.512  Sum_probs=27.7

Q ss_pred             ccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCce
Q 018756          300 LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV  335 (351)
Q Consensus       300 Lsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYV  335 (351)
                      ..+..|..+.|.. ...+|...+.+|..||++.+.+
T Consensus        19 ~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence            3456777777774 4678999999999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein

Probab=80.71  E-value=56  Score=31.52  Aligned_cols=183  Identities=8%  Similarity=0.095  Sum_probs=96.0

Q ss_pred             HHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018756           52 KLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNR  131 (351)
Q Consensus        52 ~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~  131 (351)
                      -||.-.+-++.+-+|+...+.-=.++=   -+-+..|..-+.+++.-    +...+|..+.-.+-.....|++....|..
T Consensus        16 ~L~~r~k~g~~~~kel~~f~keRa~iE---e~Yak~L~kLak~~~~~----~~~Gt~~~~~~~~~~e~e~~a~~H~~la~   88 (269)
T cd07673          16 VLYHNMKHGQISTKELSDFIRERATIE---EAYSRSMTKLAKSASNY----SQLGTFAPVWDVFKTSTEKLANCHLELVR   88 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccC----CCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355556666666666555553211110   01122344444555422    12346999998886666999999999999


Q ss_pred             HHHhhhhhHHHHhhhcChhh---------hhhhhhhhh-------HhhhhHHHHHHHHHHHHHHhhhcCC-CcchH----
Q 018756          132 LLSSQVLDPLRAMITGAPLE---------DARHLAQRY-------SRMRQEAETQAVEVSKRQQRVREAP-NPENV----  190 (351)
Q Consensus       132 ~~~~~~~~PL~~~~~~~~~e---------~~R~L~~dy-------~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~----  190 (351)
                      .|. +.++||..+....-+.         .++...+.+       .+-+..++..+.+.++    .+.+. +...+    
T Consensus        89 ~L~-~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~----~~~~~~t~k~leK~~  163 (269)
T cd07673          89 KLQ-ELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCLEQER----LKKEGATQREIEKAA  163 (269)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCHHHHHHHH
Confidence            998 5889999998533211         122222211       1112223333333322    11111 11212    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHH
Q 018756          191 AKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLR  246 (351)
Q Consensus       191 ~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~  246 (351)
                      .|++.|...+...-..+......-...|..+-+.-|.+-..||.-|-+....|+..
T Consensus       164 ~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~  219 (269)
T cd07673         164 VKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNS  219 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344555544444433333334466777766666666567777777777777653

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		8e-06
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		8e-06
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		6e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		6e-05
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		6e-05
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		7e-05
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		1e-04
2a28_A	54	Atomic-Resolution Crystal Structure Of The Second S		1e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		1e-04
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		3e-04
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		3e-04
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		3e-04
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		4e-04
2xmf_A	60	Myosin 1e Sh3 Length = 60		6e-04
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		6e-04
2dm1_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		7e-04
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		8e-04

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           +A++ + A +  EL+   GD ++V +  P+GW EGE  GK GW P+  V+
Sbjct: 7   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           +A++ + A +  EL+   GD ++V +  P+GW EGE  GK GW P+  V+
Sbjct: 8   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           ++NS+ + V     A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS 
Sbjct: 2   TDNSNNQLV---VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSN 58
Query: 334 NVEK 337
            V +
Sbjct: 59  YVRE 62

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            + +A   F   +E ELS+  GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 11  LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVRE 64

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 13  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 344
           A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE RQ  P S
Sbjct: 20  AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78

>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3 Domain Of Yeast Bzz1 Determined From A Pseudomerohedrally Twinned Crystal Length = 54

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 287 EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSA 333
           EAI+ + A  + E+S+  GD + V+R    SGW+ GEC G  G FP++
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTS 51

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           L +A++ F A  + EL+L  GD V++ +    GW  G   GK G FP+A VE+
Sbjct: 9   LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 288 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
           A++PF A +  E+S   GD + V  + V   GW  G  +G  GWFP   VEK
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 61

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 281 AVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 336
             +  A+A + F A    ELSL  GD + ++ K    GW  GE  G+ GWFPS  VE
Sbjct: 3   GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 278 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           S+  +   A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE 
Sbjct: 5   SENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
Query: 338 RQ 339
           RQ
Sbjct: 65  RQ 66

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           +A++ + A    ELS    D + + K  PSGW  G  +GK G FP+  V K
Sbjct: 9   KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339
           A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE RQ
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65

>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Protein Vav-2 Length = 73

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
           A A + F A   +ELSL  GD V +  R     GW +GE  G+ GWFPS  VE+
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 271 VIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWF 330
           V P  NS  +     AEA+  FT  S+ EL+   GD + +       W EG  +G  G F
Sbjct: 162 VSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF 221
Query: 331 PSANVEKRQRIP 342
           P + V+  +  P
Sbjct: 222 PLSFVKILKDFP 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	5e-16
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-15
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-15
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	9e-15
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-14
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	7e-14
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	1e-13
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	3e-13
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	4e-13
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	4e-13
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	5e-13
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	5e-13
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	7e-13
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	7e-13
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	8e-13
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	9e-13
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-12
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	1e-12
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-12
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-12
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-12
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	2e-12
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-12
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	2e-12
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-12
3u23_A	65	CD2-associated protein; structural genomics, struc	3e-12
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	3e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-09
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	4e-12
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	4e-12
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	5e-12
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	5e-12
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	5e-12
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	5e-12
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	6e-12
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	6e-12
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	6e-12
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	6e-12
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	7e-12
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	7e-12
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	7e-12
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	8e-12
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	8e-12
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	9e-12
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	1e-11
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-11
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-11
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-11
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-11
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-11
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	2e-11
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-11
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	2e-11
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-11
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	3e-11
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	3e-11
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	3e-11
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-11
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	3e-11
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	4e-11
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	4e-11
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-11
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	5e-11
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	5e-11
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	6e-11
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	6e-11
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	7e-11
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	7e-11
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	7e-11
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-10
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-06
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	1e-10
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-10
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	2e-10
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	2e-10
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	2e-10
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	3e-10
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-10
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	4e-10
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	7e-10
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	7e-10
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	7e-10
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	7e-10
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	8e-10
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	8e-10
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	9e-10
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	9e-10
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	1e-09
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	1e-09
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	1e-09
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	1e-09
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	1e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-05
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-09
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-09
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	2e-09
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-09
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	3e-09
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	4e-09
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	4e-09
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-09
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	5e-09
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	6e-09
1wxb_A	68	Epidermal growth factor receptor pathway substrate	8e-09
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	9e-09
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	1e-08
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-08
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-07
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-08
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-08
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-08
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	2e-08
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	2e-08
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	2e-08
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	3e-08
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-08
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	4e-08
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	5e-08
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	5e-08
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	6e-08
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	6e-08
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	7e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	7e-08
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	7e-08
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	7e-08
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	7e-08
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	7e-08
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	8e-08
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	9e-08
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-07
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	1e-07
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-07
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	1e-07
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-07
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-07
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-07
1awj_A	77	ITK; transferase, regulatory intramolecular comple	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	4e-07
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	4e-07
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	5e-07
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	5e-07
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	6e-07
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	6e-07
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	7e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	8e-07
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	9e-07
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-06
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	2e-06
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	3e-06
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	3e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-05
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	4e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	5e-06
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	6e-06
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	7e-06
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	7e-06
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	8e-06
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	8e-06
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	8e-06
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	8e-06
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	9e-06
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-05
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	2e-05
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	2e-05
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	2e-05
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	2e-05
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-05
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	2e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	3e-05
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	4e-05
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	4e-05
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	4e-05
1i07_A	60	Epidermal growth factor receptor kinase substrate	1e-04
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	2e-04
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-04
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-04
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	8e-04

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 71.4 bits (175), Expect = 5e-16
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
           S+    P  ++    V+  A       A  +  L+L VGD V V +++ +G  EGE  G+
Sbjct: 2   SSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR 61

Query: 327 AGWFPSANVEK 337
            G FP  +V+ 
Sbjct: 62  KGLFPFTHVKI 72

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 70.2 bits (172), Expect = 1e-15
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 266 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG 325
            S  P     + +  A          + A  E ELSL  G  V+V +    GW  G   G
Sbjct: 5   SSGDPGERLYDLNMPAY-----VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG 59

Query: 326 KAGWFPSANVEKRQRIPVSNVADE 349
           + GWFPS  V +    P+ +    
Sbjct: 60  QVGWFPSNYVTEEGDSPLGDHVGS 83

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 276 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           + S  +   + +A   F   +E ELS+  GD + V +V   GW EG   G+ GWFPS  V
Sbjct: 3   SGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

Query: 336 EK 337
            +
Sbjct: 63  RE 64

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 67.3 bits (165), Expect = 9e-15
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 285 LAEAIHPFT--AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            A+AI      A  +  L+L VGD V V +++ +G  EGE  G+ G FP  +V+ 
Sbjct: 3   FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-----GWFPSANVE 336
           +A+    + A+  ++LSL  G  +++ K + SGW +GE + +      GWFP+++V+
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 64.6 bits (158), Expect = 7e-14
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 276 NSSQKAVYFLAEAIHPFT--AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           N     +Y  A  I      A  +  L+L VG+ V V K++ SG  EGEC GK G FP  
Sbjct: 1   NLQNGPIY--ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFT 58

Query: 334 NVE 336
           +V 
Sbjct: 59  HVR 61

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           S  SS    Y        +    + E+S   G  V V +   SGW         GW PS 
Sbjct: 2   SSGSSGATSYM---TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSH 58

Query: 334 NVEKRQRIP 342
            +   +   
Sbjct: 59  YLVLDENEQ 67

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 62.5 bits (153), Expect = 3e-13
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 287 EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 336
           EAI+ + A  + E+S+  GD + V+R    SGW+ GEC G  G FP++  +
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 62.6 bits (153), Expect = 4e-13
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 7   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
               +  ++   ++      +    +   ++ EL L VGD + V      GW EG   GK
Sbjct: 4   GGQQMGTNKRGERRRRR--CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGK 61

Query: 327 AGWFPSANVEK 337
            G FPS  +++
Sbjct: 62  TGMFPSNFIKE 72

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 62.2 bits (152), Expect = 5e-13
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 9   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
           S  P     +  +K V     AI+ +T   E ELS   G  + V K +  GW EG   G 
Sbjct: 6   SGDPPWAPRSYLEKVV-----AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGV 60

Query: 327 AGWFPSANVEK 337
            G FP   VE 
Sbjct: 61  TGLFPGNYVES 71

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 62.3 bits (152), Expect = 7e-13
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 276 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           +S        A A   +   + +ELS   G  +++ + +   W EG   G  G  P   +
Sbjct: 2   SSGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI 61

Query: 336 E 336
            
Sbjct: 62  V 62

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 62.8 bits (153), Expect = 7e-13
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
           S   +  +   ++K       A++ F A  + EL+   G+ ++V   S + W +GE    
Sbjct: 6   SGSEIQLNNKVARKVR-----ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG 60

Query: 327 AGWFPSANVEKRQRIPVSNVADEA 350
            G FPS  V     I     A   
Sbjct: 61  IGLFPSNFVTTNLNIETEAAAVSG 84

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 61.9 bits (151), Expect = 8e-13
 Identities = 21/51 (41%), Positives = 25/51 (49%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A   F A + KEL L  GD V + K     W EGE  G+ G FP   +E
Sbjct: 10  ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 61.9 bits (151), Expect = 9e-13
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 277 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           SS  +       +  +      ELSL  G+ V V + + SGW       + GW P+  +E
Sbjct: 2   SSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61

Query: 337 KRQRIPVS 344
            +   P S
Sbjct: 62  AQNSGPSS 69

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 14/63 (22%), Positives = 18/63 (28%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           S  SS              +      L L  GD + +    P G   G    K G F   
Sbjct: 2   SSGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFI 61

Query: 334 NVE 336
            V+
Sbjct: 62  YVD 64

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           S  SS +  Y     + P+T+ S+ E+    G  V V + +  GW      GK GW P++
Sbjct: 2   SSGSSGEEKYV---TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPAS 58

Query: 334 NVEK 337
            ++K
Sbjct: 59  YLKK 62

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A     F A S KEL+L  GD V + K     W EGE  G+ G FP+  VE
Sbjct: 4   ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 277 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           SS  +      A++ +TA +  EL L  GD + V      GW   E  G+ G+ P + +E
Sbjct: 2   SSGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61

Query: 337 K 337
           K
Sbjct: 62  K 62

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A+A+  +   +  +L    GD +++R+     W +GE  G +G FP+++VE 
Sbjct: 10  AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 344
             A++ F   +E EL    GD + +       W EG   G +G+FP   VE    +P S
Sbjct: 10  CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            +A++ F A  + EL+L  GD V++ +    GW  G   GK G FP+A VE+
Sbjct: 10  CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           S +S +  V   A A   +T  + +ELS   GD + + + + S W  GE  G  G  P  
Sbjct: 3   SGSSGEGVVE--AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHK 60

Query: 334 NVEKRQRIP 342
            +       
Sbjct: 61  YITLPAGTE 69

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
             P  +P  +          +A++ F   ++ EL    GD + +       W EG   G+
Sbjct: 3   MDPEFMPPLDQPS------CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQ 56

Query: 327 AGWFPSANVEKRQRIP 342
           +G+FP + V+    +P
Sbjct: 57  SGFFPLSYVQVLVPLP 72

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            +A++ + A +  EL+   GD ++V +  P+GW EGE  GK GW P+  V+ 
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            + +  +   +E EL L VGD + + +    GW  G    K G FPS  V++
Sbjct: 10  CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
              ++ F   ++ EL    GD + +       W EG   G++G+FP   VE 
Sbjct: 6   CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 63.5 bits (154), Expect = 3e-12
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 277 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           S +  +     AI  +   S  E++L  GD V V + S SGW   + K K GW P++ +E
Sbjct: 5   SPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 19/72 (26%), Positives = 27/72 (37%)

Query: 266 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG 325
           E       +E+           AI  +TA    E+SL  G+ V V      GW       
Sbjct: 64  EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDD 123

Query: 326 KAGWFPSANVEK 337
             G+FPS  ++K
Sbjct: 124 VTGYFPSMYLQK 135

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A     + A  + EL++ VG+ +   +    GW EG+  G+ G FP   V +
Sbjct: 4   AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
           +  A++ F   +  EL    GD + +  +S + W +G  KG+ G  PS  V ++
Sbjct: 5   VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
               + + A  + EL++ VG+ +  V+K+   GW EGE  G+ G FP   V++
Sbjct: 4   YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            +    +   ++ EL L VGD + V      GW EG   GK G FPS  +++
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             A++ F   +  EL    GD + +  +S + W +G  KG+ G  PS  V +
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            EA+  + A   ++L    GD ++V       W EGE KGK G FP   VE 
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           S +S    V   AEA+      + +EL+   GD + V   S   W  G+   + GWFP++
Sbjct: 3   SGSSGDSIVS--AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPAS 60

Query: 334 NVEKRQRIP 342
            V       
Sbjct: 61  FVRLWVNQE 69

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 273 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
            + +  +  +   A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+
Sbjct: 7   GTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPA 66

Query: 333 ANVEKRQRIPVS 344
             VE RQ  P S
Sbjct: 67  NYVELRQSGPSS 78

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
           S+    P+ +   + +     A++ + A +E ELS   G  + V       W +GE  G 
Sbjct: 23  SSERATPAFHPVCQVI-----AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV 77

Query: 327 AGWFPSANVEK 337
            G FPS  V+ 
Sbjct: 78  TGLFPSNYVKM 88

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 59.6 bits (145), Expect = 6e-12
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQRIP 342
           AI  F    E EL L V D ++V   +   W E      G  G FP+    +  + P
Sbjct: 11  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEP 67

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             A++PF A +  E+S   GD   V  + V   GW  G  +G  GWFP   VEK
Sbjct: 8   YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 61

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 59.6 bits (145), Expect = 7e-12
 Identities = 19/76 (25%), Positives = 31/76 (40%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
           +        +   +     AEA+  FT  S+ EL+   GD + +       W EG  +G 
Sbjct: 2   NHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA 61

Query: 327 AGWFPSANVEKRQRIP 342
            G FP + V+  +  P
Sbjct: 62  TGIFPLSFVKILKDFP 77

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
           AI  F    E EL L V D ++V   +   W E      G  G FP+    +
Sbjct: 8   AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 58.7 bits (143), Expect = 8e-12
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            +A+  F      EL+   GD + +       W EG+   + G FPS  V 
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 58.7 bits (143), Expect = 8e-12
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A   +   S +ELS   G  +++   +   W EG   G  G  P   + 
Sbjct: 9   AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 270 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKA 327
                 +  + +    A  ++ + AA+  ELSL   + + V  V    S W  GE   + 
Sbjct: 4   GSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQK 63

Query: 328 GWFPSANVEKRQRIPVS 344
           G  P   +E     P S
Sbjct: 64  GKVPITYLELLNSGPSS 80

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSP-SGWSEGECKGKAGWFPSANVEK 337
           A A + F A   +ELSL  GD V +  ++    GW +GE  G+ GWFPS  VE+
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 58.3 bits (142), Expect = 1e-11
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            EA++ F    + +L L  GD V + +     W +G C G+ G FP+  V+
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            +A++ + A    ELS    D + + K  PSGW  G  +GK G FP+  V K
Sbjct: 8   CKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            + +  +   +E EL L VGD + + +    GW  G    K G FPS  V++
Sbjct: 4   CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 55

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 57.9 bits (141), Expect = 1e-11
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           AEA+  FT  S+ EL+   GD + +       W EG  +G  G FP + V+
Sbjct: 7   AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 263 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 322
                    +  ++ ++K       AI+ F AA + EL+   G+ + V   S   W +GE
Sbjct: 2   GHHHHHHSHMNHQHEARKVR-----AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE 56

Query: 323 CKGKAGWFPSANVE 336
                G FPS  V 
Sbjct: 57  THQGIGLFPSNFVT 70

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             A++ F     ++L +  GD + + + S   W +G+ + + G+FP+  V++
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V  
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A+A+  F    + EL     D + +          GE  G  GWFP+  VE 
Sbjct: 10  AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 276 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSAN 334
           + S    +  A+A++   A  + ELS   G     V      GW EG   GK G  P   
Sbjct: 3   SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENY 62

Query: 335 VEK 337
           VE 
Sbjct: 63  VEF 65

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
                   E   +  +     A++ +   S +E+++  GD + +   +   W + E   +
Sbjct: 6   HHHHHGSDETGKELVL-----ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDR 60

Query: 327 AGWFPSANVEKRQRIP 342
            G+ P+A V+K     
Sbjct: 61  QGFVPAAYVKKLAAAW 76

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           S  SS +A       +  F   +++EL +  G+ V V K     W+     G+ G  P  
Sbjct: 2   SSGSSGEAH----RVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCN 57

Query: 334 NVEK 337
            +E 
Sbjct: 58  YLEP 61

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFP 331
           S +S  K+  +  + I P+ A ++ EL++  GD   ++ +     GW EGE  G+ G FP
Sbjct: 1   SMDSRTKSKDY-CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 59

Query: 332 SANVEK 337
              V+ 
Sbjct: 60  DNFVKL 65

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
              + P+T  +E EL+   G+  +++ ++   +GW +GE  GK G FP     +
Sbjct: 9   CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A A+  +  +    L     D + +  K   + W  G+  GK G FP  +VE 
Sbjct: 13  ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           L   ++ +   S +EL++  GD + +   +   W + E  G+ G+ P+A ++K
Sbjct: 8   LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 337
            E    F A    E++L   D V+V +    GW  GE    G+ GWFP      
Sbjct: 20  VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFARF 72

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            + I P+ A ++ EL++  GD   ++ +     GW EGE  G+ G FP   V+ 
Sbjct: 10  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           L  A++ +   S +E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 7   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 277 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEGECKGKAGWFPSAN 334
           SS  +      A+  +   +   LS   GD + +  V+    GW  G   G++G FP+  
Sbjct: 2   SSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADI 61

Query: 335 VE 336
           V+
Sbjct: 62  VQ 63

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 58.9 bits (142), Expect = 5e-11
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP 342
           A+A + F A    ELSL  GD + ++ K    GW  GE  G+ GWFPS  VE+     
Sbjct: 8   AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEY 65

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 56.4 bits (137), Expect = 6e-11
 Identities = 19/55 (34%), Positives = 23/55 (41%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340
           A A++ F A  E EL    G+ V V   S   W  G    K G FP+  V    R
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMMR 58

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 56.5 bits (137), Expect = 6e-11
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339
           A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE RQ
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPS 332
           S  +S  ++   A A + F A ++ ELS   GD + V+ +     W + E  GK G+ P 
Sbjct: 2   SRRASVGSME--AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPK 59

Query: 333 ANVE 336
             +E
Sbjct: 60  NYIE 63

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            + I P+ A ++ EL++  GD   ++ +     GW EGE  G+ G FP   V+ 
Sbjct: 5   CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 277 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSP--SGWSEGECKGKAGWFPSA 333
           SS  +     +A++ +   ++ ELS   G  + ++ K +    G+ EGE  G+ G FPS 
Sbjct: 2   SSGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSV 61

Query: 334 NVEKRQRIPVS 344
            VE+    P S
Sbjct: 62  LVEELSSGPSS 72

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 24/77 (31%), Positives = 31/77 (40%)

Query: 260 SEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS 319
            E           P  N     +Y          A  +  L+L VG+ V V K++ SG  
Sbjct: 216 PEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQW 275

Query: 320 EGECKGKAGWFPSANVE 336
           EGEC GK G FP  +V 
Sbjct: 276 EGECNGKRGHFPFTHVR 292

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 337
            A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 189

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGW----SEGECKGKAGWFPSANVEKRQRIPV 343
           +I  +    E+      G  + V + +P+GW         K   GW PS  +EK+   P 
Sbjct: 15  SIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPS 73

Query: 344 S 344
           S
Sbjct: 74  S 74

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 285 LAEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 337
           + EA + F    S  EL L  GD + + +  PSGWS G+     K GW P+A ++ 
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
             A++ F A  + EL+   G+ + V   S + W +GE     G FPS  V 
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             AI  + A  E +LS   G+ +++ + + + W  GE  G  G+ P+ +V K
Sbjct: 10  FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECK 324
           S    + + N   +       A++ F      +L+   GD   V+ +  S   W EG+ +
Sbjct: 6   SGHERVGNLNQPIEVT-----ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLR 60

Query: 325 GKAGWFPSANVEK 337
           G+ G FP+  V  
Sbjct: 61  GQTGIFPANYVTM 73

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 269 PPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPS---GWSEGECK 324
                SE    +  +    A++ F A +  ELS+     + ++     +    W   E  
Sbjct: 3   SGSSGSEAEGNQVYF----AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN 58

Query: 325 GKAGWFPSANVEKRQRIPVS 344
           GK G+ PS  + K +  P S
Sbjct: 59  GKKGYVPSNYIRKTESGPSS 78

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
           S +S  + +   A+A+  +TA  +  L+    D + V +     W  GE  G  GWFP +
Sbjct: 3   SGSSGVENLK--AQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKS 59

Query: 334 NVE 336
            V+
Sbjct: 60  YVK 62

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
           A++ +   +E EL L  GD V V +    GW  G  +   K G FP   V  
Sbjct: 12  AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPS--GWSEGECKGKAGWFPSANVEK 337
           LA+A++   A S  ELS   GD + V+ + +    GW      G+ G  P   ++ 
Sbjct: 5   LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 274 SENSSQKAVYFLAEAIHPFTAA-------SEKELSLGVGDYV-VVRKVSPSGWSEGECKG 325
           S +S ++ V     A++ +           E EL+   GD + V  ++   G+  GE  G
Sbjct: 3   SGSSGRRMV-----ALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNG 57

Query: 326 KAGWFPSANVEK 337
           + G  PS  +E+
Sbjct: 58  QKGLVPSNFLEE 69

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEK 337
            +A+  + A  E EL+      +   +    GW  G+  GK   WFPS  VE+
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 277 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           SS  +      A++P+++    +L+   G+ ++V +     W  G    ++G FPS  V+
Sbjct: 2   SSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGSIGDRSGIFPSNYVK 60

Query: 337 KRQRIPVS 344
            +   P S
Sbjct: 61  PKDSGPSS 68

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 54.4 bits (131), Expect = 8e-10
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS----GWSEGECK--GKA 327
                + A +   + I+P+T  ++ EL L  GD++ +  +  +    GW  G     G +
Sbjct: 7   GSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCS 66

Query: 328 GWFPSANVEKRQRIPV 343
           G  P   + K      
Sbjct: 67  GLLPENYITKADECST 82

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 286 AEAIHPFTAASEK-ELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVE 336
            + I P TA S K  LS   GD + ++      GW  GE       GWFPS+  +
Sbjct: 9   VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 53.4 bits (129), Expect = 9e-10
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFP 331
           S  SS         A+H ++A   +EL L  G+ + V      GW +G     G+ G FP
Sbjct: 2   SSGSSGNMF----VALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFP 57

Query: 332 SANVEKRQRIP 342
           S  V       
Sbjct: 58  SDYVIPVSGPS 68

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 54.1 bits (130), Expect = 9e-10
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 266 ESAPPVIPSENSSQKAVY-FLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGEC 323
            + P           A++ +    + P   A+E+EL    G  + V       G+  GE 
Sbjct: 7   GTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET 66

Query: 324 KGKAGWFPSANVEK 337
             + G  P   V +
Sbjct: 67  CARLGLIPCNMVSE 80

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 20/52 (38%), Positives = 24/52 (46%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A     + A  E ELSL  G  V V +    GW  G   G+ GWFPS  V +
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLE 55

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-GWFPSANVEK 337
            +A++ + A    EL+   G  +      P GW +G+   +   +FPS  VE 
Sbjct: 10  VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 263 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 322
           + + S+     S +S  K  +    AI+ F  +   +LSL +GD V +++     W  G 
Sbjct: 41  EGRGSSGSSGSSGSSGDKERH--GVAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGY 97

Query: 323 C---KGKAGWFPSANVEKRQ 339
               K   G FP + +  ++
Sbjct: 98  LIKHKMLQGIFPKSFIHIKE 117

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 280 KAVY-FLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            A   +            +  L+L  GD V V   +   G+  GE  G  G  P+  ++ 
Sbjct: 11  IAALDYDPGDGQM-GGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDH 69

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP 342
           AEA+  FT  S+ EL+   GD + +       W EG  +G  G FP + V+  +  P
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP 233

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 22/112 (19%), Positives = 37/112 (33%)

Query: 225 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYF 284
             R +                  A      +               + P  ++    V+ 
Sbjct: 181 LVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFA 240

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            A       A  +  L+L VGD V V +++ +G  EGE  G+ G FP  +V+
Sbjct: 241 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 290 HPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQRIP 342
           + F     ++L    G+ +V+ +     W     K G+ G  P   VEK  R  
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSS 185

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 286 AEAIHPFTAASEK-ELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVE 336
            + I P TA + K  LS   GD + ++      GW  GE       GWFPS+  +
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSP--SGWSEGECKGKAGWFPSANVEK 337
           LA A++        EL+   GD + ++ +  P   GW +    G+ G  P+  ++ 
Sbjct: 9   LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEK 337
            +A+  + A  E EL+      +   +    GW  G+  GK   WFPS  VE+
Sbjct: 6   VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 266 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK- 324
            S  P         +AV     A + F    E ELS   G+++ + +     W EG    
Sbjct: 5   SSGKPPTYQVLEYGEAV-----AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITG 59

Query: 325 -GKAGWFPSANVEKRQRIPVSNVADEA 350
            G+ G FP++ V+  +   +    D  
Sbjct: 60  TGRQGIFPASYVQVSREPRLRLCDDSG 86

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSE--GECKGKAGWFPSANVE 336
            + ++ +    + E+++  GD + +V + + SGW++   +  G+ G  P+  + 
Sbjct: 4   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG---KAGWF 330
           S +S  K      + I+   A ++ EL+   G+ ++V       W  G  +G   + G F
Sbjct: 3   SGSSGNKVRR--VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVF 60

Query: 331 PSANVEK 337
           P + V  
Sbjct: 61  PVSFVHI 67

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A A++ F      +L    GD   ++ +  S + W  G   G+ G FP+  VE
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 17/90 (18%), Positives = 25/90 (27%)

Query: 260 SEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS 319
                       +             AEA+       ++EL    GD + V   +   W 
Sbjct: 7   HHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWW 66

Query: 320 EGECKGKAGWFPSANVEKRQRIPVSNVADE 349
            G      GWFP++ V  R         D 
Sbjct: 67  WGRVADGEGWFPASFVRLRVNQDEPADDDA 96

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDY-VVVRKVSPSGWSEGECK-GKAGWFPSANVEK 337
             A++ +    + ELS   GD    + +    GW  G    G+ G +P+  VE 
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 260 SEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPSGW 318
           S       +  ++P              A+  F    +   L++  GD + V +  P G 
Sbjct: 2   SSHHHHHHSSGLVPR-------GSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGR 54

Query: 319 SEGECKG------KAGWFPSANVE 336
            +G          + G+FP   VE
Sbjct: 55  WKGHIHESQRGTDRIGYFPPGIVE 78

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
             + ++ FTA +  ELS+   + + V +     W      G+AG+ P   + +
Sbjct: 9   YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGE 61

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGE-CK 324
           S+       N            ++ + A+   EL++   + + V+       W +     
Sbjct: 2   SSGSSGTLRNYPLTCK-----VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV 56

Query: 325 GKAGWFPSANVEK 337
           G+ G+ P   ++ 
Sbjct: 57  GQVGYVPEKYLQF 69

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 288 AIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A++ F A+ +  LS+  G+ + V+       W E + K   GW PSA +  
Sbjct: 10  ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITP 60

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 14/103 (13%), Positives = 30/103 (29%)

Query: 234 VAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFT 293
           V +     N      A    + +     ++   ++      E   +              
Sbjct: 200 VQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPN 259

Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A    +L +  G  V+V +   +G  + E  G+ G  P   + 
Sbjct: 260 AYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLR 302

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQ 339
                 FT   E +L    G+ + +   +   W E     G  G  P+  V+ + 
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQM 204

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVE 336
           A A   F   ++ E+S   G+ + + +     W EG   G  + G FP   V+
Sbjct: 10  AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVE 336
           A A   F   ++ E+S   G+ + + +     W EG   G  + G FP   V+
Sbjct: 9   AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVE 336
           A A++ F   ++ EL L  GD V +      GW   E     K G  P   V 
Sbjct: 4   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 337
             A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 337
             A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 286 AEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
            EA + F    S  EL L  GD V + +  PSGWS  +     K GW P+A +  
Sbjct: 5   FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTP 59

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 273 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD--YVVVRKVSP--SGWSEGECKGKA- 327
            +  +S +  + +A A + F A S++E+S   GD   + +++  P   GW      G+  
Sbjct: 7   GTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTT 66

Query: 328 GWFPSANVE 336
           G  P+  V+
Sbjct: 67  GLIPANYVK 75

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEK 337
             A++ +TA    EL++  GD + V       W  G   KG+ G+FP+ +V  
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 266 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPS----GWSE 320
           +     +  ++        +  A+  + AA ++EL+L  GD V V+ +        GW  
Sbjct: 12  DLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWT 71

Query: 321 GECK-GKAGWFPSANVE 336
           G+   G+ G FPS  V 
Sbjct: 72  GQLPSGRVGVFPSNYVA 88

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            + ++ F A + +EL++  G+ + V   S   W      G++G+ PS  +E 
Sbjct: 10  MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEP 61

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
             A++ ++A  E E+S   GDY+V  +    GW  G  +  G+ G  P+  +E 
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 268 APPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGE-CK 324
           +       N     V  + + ++PF++ +E+EL+   G+ + V  +  +   W + +  +
Sbjct: 2   SSGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR 61

Query: 325 GKAGWFPSANVEKRQRIPVSNVADEA 350
           G+ G  P   V      P  + A   
Sbjct: 62  GQVGLVPKNYVVVLSDGPALHPAHSG 87

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 48.8 bits (116), Expect = 6e-08
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP---------------SGWSEG--ECKGK 326
           F   A++PF     ++L L  GD +VV + +                 GW  G  E   +
Sbjct: 12  FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71

Query: 327 AGWFPSANVEKRQRIPVS 344
            G FP   VE    + ++
Sbjct: 72  RGDFPGTYVEFLGPVALA 89

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 286 AEAIHPFTAA-SEKELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
            +AI    A  +   LS   GD + ++   +  GW  GE +     GWFP +    
Sbjct: 10  VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A  + P++A    E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 3   APPLPPYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 53

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 47.6 bits (114), Expect = 7e-08
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVE 336
           A A + + AA + EL+    D ++  +     W  GE +  G  G FPS  V 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 273 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG-ECKGKAGWFP 331
              ++ ++ +     A+  FTA    +L+   G+ ++V +  P GW    + KG  G  P
Sbjct: 5   HKWSTGEEYI-----AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVP 59

Query: 332 SANVEK 337
              +E 
Sbjct: 60  RTYLEP 65

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVE 336
           A A++ F   ++ EL L  GD V +      GW   E +   K G  P   V 
Sbjct: 8   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 49.3 bits (117), Expect = 7e-08
 Identities = 22/101 (21%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 252 GDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVR 311
           G V                             F  +A H +TA    EL L  GD V+V 
Sbjct: 13  GLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVI 72

Query: 312 KVS-----PSGWSEG----------ECKGKAGWFPSANVEK 337
                     GW  G          E +   G FP    E+
Sbjct: 73  PFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 113

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 47.9 bits (114), Expect = 8e-08
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A   +E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 45

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVE 336
           A  ++ F A    EL+  VG+ + +       W   +     G  G  P   V 
Sbjct: 8   AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 267 SAPPVIPSENSSQKAVYFLA----EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEG 321
           S       +  S K    +A              E EL L  G Y+ V   +   G+ EG
Sbjct: 3   SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62

Query: 322 E-CKGKAGWFPSANVEK 337
           E   G+ G  PS  V+ 
Sbjct: 63  ELLDGQRGLVPSNFVDF 79

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 278 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-----KAGWFPS 332
           S+  V F   A  P+ +  E +L+      ++V  V  + W  GE +        G FP 
Sbjct: 2   SEPEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPK 61

Query: 333 ANVE 336
           + V 
Sbjct: 62  SFVA 65

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 8/79 (10%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD-YVVVRKVSPSGWSEGECK- 324
           S            + +          T     EL+   GD   ++       W   +   
Sbjct: 6   SGRMPTRRWAPGTQCI-----TKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHT 60

Query: 325 -GKAGWFPSANVEKRQRIP 342
            G+ G   +  + +R    
Sbjct: 61  SGQEGLLAAGALRERSGPS 79

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP 342
            + ++PF++ +E+EL+   G+ + V  +  +   W + +  +G+ G  P   V      P
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68

Query: 343 VSN 345
             +
Sbjct: 69  ALH 71

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 274 SENSSQKAVYFLAEAIHPFTA-ASEKELSLGVGDYV-VVRKVSPSGWSEGE-CKGKAGWF 330
           S  SS  A    A  ++ F A     EL++  G+ + V       GW EG+  KG+ G  
Sbjct: 2   SSGSSGMATK--ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLV 59

Query: 331 PSANVE 336
           P+  VE
Sbjct: 60  PTDYVE 65

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CK 324
           S    + +   +   ++    A++ + A +E +LS   G+   +   S   W E      
Sbjct: 2   SMTGTLRTRGGTGVTLF---VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTT 58

Query: 325 GKAGWFPSANVEK 337
           G+ G+ PS  V  
Sbjct: 59  GETGYIPSNYVAP 71

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 299 ELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 351
           E+++  GD + +   +   W + E   + G+ P+A V+K        +    Y
Sbjct: 5   EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALY 57

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 264 RKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC 323
           +K   P    +  S Q+    L  A++ +     +EL+L   +   +   S   W   + 
Sbjct: 1   KKPLPPTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD 60

Query: 324 K-GKAGWFPSANVEKR 338
           K G  G+ PS+ + ++
Sbjct: 61  KNGHEGYAPSSYLVEK 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 46/293 (15%), Positives = 87/293 (29%), Gaps = 79/293 (26%)

Query: 3   SLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMV-----IDEVEMQ-RHQQLEKLY-- 54
           +L+   S   E V +  Q ++ Q   +   RSD        I  ++ + R     K Y  
Sbjct: 188 NLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 55  --------RSTRGTKDFQ---------RDLVKVAEVFTAIGYKHI---EAGTKLSEDCCR 94
                   ++ +    F          R   +V +  +A    HI        L+ D   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPD--- 301

Query: 95  YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD--PLRAMITGAPLED 152
              E      +++L K             + Q+     L  +VL   P R  I    + D
Sbjct: 302 ---EV-----KSLLLKYLDC---------RPQD-----LPREVLTTNPRRLSIIAESIRD 339

Query: 153 ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPN--------PENVAKLHAAEARMQELK 204
                  +  +  +  T  +E S       E           P +    H     +  + 
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIW 396

Query: 205 AN------MAILGKEAAAALAAIEAQQHRLT----FQRLVAMVEGEKNYHLRI 247
            +      M ++ K    +L   + ++  ++    +  L   +E E   H  I
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 44/321 (13%), Positives = 82/321 (25%), Gaps = 93/321 (28%)

Query: 37  MVIDEVEMQRHQQ------LEKLYRS--TRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKL 88
           M  +  E Q   +       +    +   +  +D  + ++   E+   I  K   +GT  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 89  SEDC-CRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSS---QVLDPLRAM 144
                     E  Q   E +L                 + ++  L+S    +   P  +M
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVL-----------------RINYKFLMSPIKTEQRQP--SM 107

Query: 145 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK 204
           +T           + Y   R          +K    V      +   KL  A   + EL+
Sbjct: 108 MT-----------RMYIEQRDRLYNDNQVFAKYN--V---SRLQPYLKLRQA---LLELR 148

Query: 205 AN-------MAILGKE--AAAALAAIEAQQHR------LTF---QRLVAMVEGEKNYHLR 246
                    +   GK   A     + + Q         L          ++E  +    +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 247 IAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD 306
           I            + K R  S            +    L    +           L    
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSI---------QAELRRLLKSKPYE--------NCL---- 247

Query: 307 YVVVRKV-SPSGWS--EGECK 324
            +V+  V +   W+     CK
Sbjct: 248 -LVLLNVQNAKAWNAFNLSCK 267

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 272 IPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-----KGK 326
           + S + +     ++   +  F + +++ELS   GD   V +     W             
Sbjct: 1   MVSRDQAHLGPKYVG--LWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVA 58

Query: 327 AGWFPSANVEKRQ 339
            G+ P   + +R+
Sbjct: 59  QGYVPHNYLAERE 71

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CK 324
           S   V  S  +       +  A++ + A + ++LS   G+   +   +   W E      
Sbjct: 11  SFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIAT 70

Query: 325 GKAGWFPSANVEKRQRIP 342
           GK+G+ PS  V     I 
Sbjct: 71  GKSGYIPSNYVVPADSIQ 88

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWF 330
           S +S ++       AI P+T   +  E+S   GD  +V      GW         + G  
Sbjct: 3   SGSSGRRVR-----AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLI 57

Query: 331 PSANVEK 337
               VE+
Sbjct: 58  VEDLVEE 64

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRI 341
           A++ + A +E +LS   G+   +   S   W E      G+ G+ PS  +    R+
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL 65

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGD-YVVVRKVSPSGWSEGECK-GKAGWFP 331
           S   +         A + F   +E++L    GD   +V       W + + K G+ G  P
Sbjct: 2   SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIP 61

Query: 332 SANVEKRQRI 341
           +  V+KR+ +
Sbjct: 62  ANYVQKREGV 71

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 38/345 (11%), Positives = 100/345 (28%), Gaps = 9/345 (2%)

Query: 1   MESLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT 60
                ++    K+      +      S     ++D  +  E   +   ++EK  +    T
Sbjct: 145 WAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKT 204

Query: 61  KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARK 120
           K+     +K  +  T    +++E   ++ E C ++  +  +   E +L     +      
Sbjct: 205 KEKYEKSLKELDQGTP---QYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVA 261

Query: 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180
             +    D  + + +                       ++     +         K++  
Sbjct: 262 GYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKKKAT 321

Query: 181 VREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240
                   N     +  ++        +   + A +  +    +    T   +    + +
Sbjct: 322 DGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTK 381

Query: 241 KN----YHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAAS 296
                 Y    +      + E  +     ++     P ++ +         A++ +    
Sbjct: 382 AKNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQE 441

Query: 297 EKELSLGVGDYV-VVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 339
             ELS   GD +  +      GW +G    G+ G +P+  VE  Q
Sbjct: 442 HDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 286 AEAIHPFTAASE--KELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A+A++P+ A  +   E+S    + + V  +    W      G+ G  PS  V+ 
Sbjct: 8   AKALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQL 61

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--- 323
           S    +     + K  +    AI+ F  +   +LSL +GD V +++     W  G     
Sbjct: 3   SGSSGMAPWRKADKERH--GVAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKH 59

Query: 324 KGKAGWFPSANVEKRQRIPVSNVADE 349
           K   G FP + +  ++         E
Sbjct: 60  KMLQGIFPKSFIHIKEVTVEKRRNTE 85

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 273 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGE-CKGKAGWF 330
            S +S    V     AI+ F  +SE  +S+  G+ + ++ +    GW+     +G  G+ 
Sbjct: 2   SSGSSGGHCV-----AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYV 56

Query: 331 PSANVEKRQ 339
           P++ +    
Sbjct: 57  PTSYLRVTS 65

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVE 336
           A  ++ F A  + EL +  G+ + +       W   +     G  G  P + V 
Sbjct: 6   AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRI 341
           A++ + A    +LS   G+   + +  P  W E      G+ G+ PS  V     I
Sbjct: 11  ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 261 EKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWS 319
             Q K+     +P     Q+  Y+    I P   A    L L  GD V + K      W 
Sbjct: 1   RAQDKKRNELGLPKMEVFQE--YY---GIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWW 55

Query: 320 EG--ECKGKAGWFPSANVE 336
           EG      + GWFP   V 
Sbjct: 56  EGRNTATNEVGWFPCNRVH 74

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 48  QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI 107
            Q+E L    R TK     ++++    TA  Y  ++    L +       ++ +      
Sbjct: 11  LQIELL----RETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE------ 60

Query: 108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 167
           L +      + +K + K  E     ++   +  +  ++T   +ED     ++Y   R E 
Sbjct: 61  LQEEFGYNAETQKLLCKNGETLLGAVNF-FVSSINTLVTKT-MEDTLMTVKQYEAARLEY 118

Query: 168 ETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR 227
           +    ++ +     R+A       +L +A+A  Q  +     L  + A  L  +E  + +
Sbjct: 119 DAYRTDLEELSLGPRDA---GTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIK 175

Query: 228 LTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPP 270
           +  ++L+        Y       L     +   + +   +  P
Sbjct: 176 VMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKP 218

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 288 AIHPFTAASEKELSLGVGD-YVVVRKVSPSGWSEGECKGKAGWFPS 332
           A + F A ++ ELS   GD   V+ +     W + E  GK G+ P 
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPK 50

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340
               +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V    R
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGW---------SEGECKGKAGWFPSANVEKR 338
           A+  + A + ++LS   GD + V   S  GW           G  +   G+ PS  V + 
Sbjct: 12  ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAED 71

Query: 339 QRI 341
              
Sbjct: 72  SGP 74

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339
              ++ +TA ++ EL+   G  + V       W +GE  G+ G FPS  V+   
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTT 58

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 263 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 322
                    +       + V  +A     +TA  ++EL +   + + +   S + W    
Sbjct: 13  DYNSLKKGSLVKNLHMTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRN 70

Query: 323 CKGKAGWFPSANVEKR 338
              + G+ PS  VE++
Sbjct: 71  AANRTGYVPSNYVERK 86

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 271 VIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAG 328
            +               AI+     +  E+ +  GD + V      G+S+G  +  G+ G
Sbjct: 430 SLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTG 489

Query: 329 WFPSANVEKRQRI 341
            +PS  V ++   
Sbjct: 490 LYPSYKVREKIET 502

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 42.8 bits (100), Expect = 7e-06
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 17/78 (21%)

Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP---------------SGWSEG--ECKGK 326
           +   A++ +    E+++ L +GD + V K S                 GW  G  E  G+
Sbjct: 6   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 65

Query: 327 AGWFPSANVEKRQRIPVS 344
            G FP   VE   R  +S
Sbjct: 66  RGDFPGTYVEYIGRKKIS 83

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGE--CKGKAGWFPSANVE 336
             I P   A    L L  GD V + K      W EG      + GWFP   V 
Sbjct: 14  YGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGECK--GKAGWFPSANVEK 337
               + F A S+ EL++  GD V +     S  W   +    GK+G  P+  +E 
Sbjct: 5   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 339
           A++ +   +  +L L  GD   + + S   W     K G+ G+ PS  V + +
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-G 325
                 P     +  V     A++ +     +EL+L   +   +   S   W   + + G
Sbjct: 7   GEDNRRPLWEPEETVV----IALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNG 62

Query: 326 KAGWFPSANVEKRQ 339
             G+ PS+ + ++ 
Sbjct: 63  HEGYVPSSYLVEKS 76

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 288 AIHPFTAASEK-ELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
           AI P+T   +  E+S   GD  +V      GW         + G      VE+
Sbjct: 10  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 285 LAEAIHPFTAASEKELSLGVGD-YVVVRKVSPSGW-------SEGECKGKAGWFPSANVE 336
           L  A++ +   S +E+++  GD   ++   +   W         G+   + G+ P+A V+
Sbjct: 3   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62

Query: 337 K 337
           K
Sbjct: 63  K 63

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAAS-EKELSLGVGDYVVV-----RKVSPSGWSE 320
            + P+ PS+    +A+Y        F   + E E++L  GD + +          S W +
Sbjct: 5   GSEPIDPSKLEFARALY-------DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57

Query: 321 GECK-GKAGWFPSANVEKRQR 340
              K G  G+ P   +E  +R
Sbjct: 58  VRTKNGNIGYIPYNYIEIIKR 78

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 277 SSQKAVYFLAEAIHPFTAAS-EKELSLGVGD-YVVVRKVSP----SGWSEGECK-GKAGW 329
           S     +F A A++ F   + E E++L  GD   ++ K  P    S W +   K G  G+
Sbjct: 2   SHHHHHHF-ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGY 60

Query: 330 FPSANVE 336
            P   +E
Sbjct: 61  IPYNYIE 67

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 6/77 (7%)

Query: 266 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGW-SEGECK 324
            S P   P    S          +  + +          G+ + V       W +     
Sbjct: 5   SSGPLPNPEGLDSDFLA-----VLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLST 59

Query: 325 GKAGWFPSANVEKRQRI 341
           G+  + P   V +    
Sbjct: 60  GRESYIPGICVARVSGP 76

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-- 324
           S  P I    S    V     A++ + A   ++LS   GD +VV + S   W +      
Sbjct: 13  SNTPGIREAGSEDIIV----VALYDYEAIHHEDLSFQKGDQMVVLEESGEWW-KARSLAT 67

Query: 325 GKAGWFPSANVEKRQ 339
            K G+ PS  V +  
Sbjct: 68  RKEGYIPSNYVARVD 82

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 339
           +  A++ F A    +L L  G   ++ + +   W     K G  G+ PS  V  ++
Sbjct: 4   IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAAS-EKELSLGVGDYVVV-----RKVSPSGWSE 320
            + P+ PS+    +A+Y        F   + E E++L  GD + +          S W +
Sbjct: 5   GSEPIDPSKLEFARALY-------DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57

Query: 321 GECK-GKAGWFPSANVEKRQRIPVSNVADE 349
              K G  G+ P   +E  +R       D+
Sbjct: 58  VRTKNGNIGYIPYNYIEIIKRRKKIEHVDD 87

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 21/99 (21%), Positives = 27/99 (27%), Gaps = 15/99 (15%)

Query: 254 VEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKV 313
           V  E                          F  +A H +TA    EL L  GD V+V   
Sbjct: 113 VVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPF 172

Query: 314 SP-----SGWSEG----------ECKGKAGWFPSANVEK 337
                   GW  G          + +   G FP    E+
Sbjct: 173 QNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGECK--GKAGWFPSANVEKRQ 339
               + F A S+ EL++  GD V +     S  W   +    GK+G  P+  +E  +
Sbjct: 9   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
                + F A +  ELS+   D + V   S   W   +  G+ G+ P 
Sbjct: 10  WVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPY 57

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRI 341
                A+  F    E++L    GD + +R      W   E  +GK G  P   VEK +  
Sbjct: 136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA 195

Query: 342 PVS 344
             S
Sbjct: 196 SAS 198

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI 341
            A++ + F A +  ELS+   D + +       W      G +G+ P+  ++  +  
Sbjct: 3   YAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTP 59

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 263 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 322
             K           + +K +  +      FT   E +L    G+ + +   +   W E  
Sbjct: 98  HFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEAR 157

Query: 323 -CKGKAGWFPSANVE 336
              G  G  P+  V+
Sbjct: 158 NALGTTGLVPANYVQ 172

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339
           A   +TA  ++EL +   + + +   S + W       + G+ PS  VE++ 
Sbjct: 9   AKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKL 60

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI 341
           +  A   + A  E+EL +   + + +   S S W       K G+ PS  VE++   
Sbjct: 9   VVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKNSA 65

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 253 DVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD-YVVVR 311
           D E + +SE  R  S   ++   + +   ++    A++ F A+ +  LS+  G+   V+ 
Sbjct: 16  DFEPQGLSEAARWNSKENLLAGPSENDPNLF---VALYDFVASGDNTLSITKGEKLRVLG 72

Query: 312 KVSPSGWSEGECKGKAGWFPSANVEKRQRI 341
                 W E + K   GW PS  +     +
Sbjct: 73  YNHNGEWCEAQTKNGQGWVPSNYITPVNSL 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	99.84
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	99.83
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.62
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.61
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.6
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.57
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.57
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.56
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.56
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.56
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.56
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.55
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.55
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.55
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.55
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.54
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.54
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.54
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.54
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.54
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.54
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.54
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.54
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.54
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.53
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.53
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.53
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.53
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.53
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.52
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.52
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.52
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.52
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.52
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.52
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.52
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.52
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.52
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.51
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.51
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.51
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.51
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.51
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.51
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.51
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.51
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.51
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.51
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.51
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.51
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.51
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.51
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.51
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.5
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.5
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.5
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.5
3u23_A	65	CD2-associated protein; structural genomics, struc	99.5
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.5
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.5
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.5
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.5
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.49
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.49
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.49
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.49
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.49
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.49
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.49
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.49
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.49
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.49
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.48
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.48
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.48
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.48
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.48
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.48
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.48
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.47
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.47
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.47
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.47
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.47
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.47
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.47
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.47
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.47
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.47
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.47
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.47
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.47
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.46
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.46
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.46
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.46
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.46
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.46
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.46
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.46
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.46
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.46
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.46
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.46
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.45
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.45
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.45
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.45
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.45
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.45
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.45
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.45
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.45
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.45
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.45
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.45
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.45
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.45
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.45
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.45
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.44
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.44
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.44
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.44
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.44
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.44
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.44
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.44
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.44
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.44
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.44
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.43
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	99.43
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.43
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.43
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.43
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.43
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.42
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.42
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.42
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.42
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.41
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.41
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.41
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.41
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.41
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.41
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.41
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.4
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.4
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.39
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.38
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.38
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.38
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.37
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.37
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.37
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.37
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.37
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.37
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.36
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.36
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.36
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	99.36
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.35
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.35
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.35
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.34
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.34
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.33
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.32
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.28
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.27
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.26
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.26
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.25
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.23
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.2
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.2
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.18
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.17
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.16
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.15
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.15
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.12
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	99.11
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.11
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.1
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	99.08
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.06
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.03
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.02
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.01
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.55
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.99
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	98.99
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.97
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.97
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.96
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	98.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.89
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.4
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	98.87
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.87
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.84
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.73
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.72
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.67
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.55
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.51
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.46
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.4
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.36
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.36
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	98.15
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.14
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.14
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.13
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.07
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.97
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	97.94
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.74
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	97.72
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.69
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	97.25
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	97.16
3ok8_A	222	Brain-specific angiogenesis inhibitor 1-associate	96.65
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	95.89
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	95.71
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	94.97
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	94.95
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	94.35
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	93.82
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	93.73
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	93.59
2kt8_A	76	Probable surface protein; SH3 family, structural g	93.44
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	93.44
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	93.33
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	91.78
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	91.32
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	91.2
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	90.64
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	88.27

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=99.84  E-value=9.1e-20  Score=169.86  Aligned_cols=152  Identities=20%  Similarity=0.356  Sum_probs=131.4

Q ss_pred             cCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh----
Q 018756           77 IGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED----  152 (351)
Q Consensus        77 ~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~----  152 (351)
                      ++||+++.  .||++|..+|.++|   .+++||.||..||+|+++|++.+..|+..+.++|++||+.++..+++++    
T Consensus        68 ~~~~~~~~--~L~~~m~~~~~~l~---~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~r  142 (240)
T 2z0v_A           68 TGYPQTEG--LLGDCMLKYGKELG---EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHL  142 (240)
T ss_dssp             CSSCCHHH--HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCCcHH--HHHHHHHHHHhhcC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999988  69999999999999   7899999999999999999999999999999999999999999998764    


Q ss_pred             ----hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhh
Q 018756          153 ----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ-QHR  227 (351)
Q Consensus       153 ----~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~q-qq~  227 (351)
                          .+|||||+.|             .|..|.     ++  .+|+.|+.+|+++++.       +...|..+-+. ...
T Consensus       143 Kkle~~rLd~D~ak-------------~k~~k~-----~e--eEl~~A~~~fe~~~e~-------~~~~m~~~~~~~~e~  195 (240)
T 2z0v_A          143 KKLEGRRLDYDYKK-------------KRVGKI-----PD--EEVRQAVEKFEESKEL-------AERSMFNFLENDVEQ  195 (240)
T ss_dssp             HHHHHHHHHHHHHH-------------TTTTSS-----CH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHSTHHH
T ss_pred             HHHHHHHHHHHHHH-------------HHhccc-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCcHHH
Confidence                7889888887             333331     33  7999999999999998       67778776442 333


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 018756          228 LTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEK  262 (351)
Q Consensus       228 lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se~  262 (351)
                        +..|.+||++++.||+++.++|.+|...+....
T Consensus       196 --l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~~  228 (240)
T 2z0v_A          196 --VSQLAVFIEAALDYHRQSTEILQELQSKLQMRI  228 (240)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              678999999999999999999999999886543

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=99.83  E-value=2.4e-19  Score=168.35  Aligned_cols=208  Identities=21%  Similarity=0.334  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhch-hhhhHHHH-------------------HH
Q 018756           11 LKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT-KDFQRDLV-------------------KV   70 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~v-------------------r~   70 (351)
                      |+-++.|-.|-|--.+|++-  ...   +|+.    ...||+-+-.|+.+ +++++.+-                   -.
T Consensus         6 ~kK~~~ra~q~~~ek~G~~E--~Te---l~~d----~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k   76 (256)
T 1zww_A            6 LKKQFHKATQKVSEKVGGAE--GTK---LDDD----FKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSK   76 (256)
T ss_dssp             -----------------------CC---CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC-----------
T ss_pred             HHHHHHHHHHHHHhHhcccc--ccC---CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHH
Confidence            45566777778888888432  121   2432    33444444444422 33333322                   11


Q ss_pred             hHHHh-hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 018756           71 AEVFT-AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP  149 (351)
Q Consensus        71 ~~~~~-~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~  149 (351)
                      ++|+. +.+||+++.  .||++|..+|.++|   ++++||.||..||+++++|++.+..++..+.++|++||+.++.+++
T Consensus        77 ~~g~~k~~~~p~~~~--~L~~~m~~~~~~l~---~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~  151 (256)
T 1zww_A           77 IRGQEKGPGYPQAEA--LLAEAMLKFGRELG---DDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDL  151 (256)
T ss_dssp             ----------CCHHH--HHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHH
T ss_pred             hhcccccCCCCCcHH--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222 226899987  69999999999999   7899999999999999999999999999999999999999999888


Q ss_pred             hhh--------hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018756          150 LED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI  221 (351)
Q Consensus       150 ~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v  221 (351)
                      +++        .+|||||+.|             .|..|.     ++  ++|+.|+.+|++.++.       +...|..+
T Consensus       152 k~i~k~rkkl~~~rLdyD~~k-------------~k~~k~-----~e--eEle~A~~~fe~~~e~-------~~~~m~~l  204 (256)
T 1zww_A          152 REIQHHLKKLEGRRLDFGYKK-------------KRQGKI-----PD--EELRQALEKFDESKEI-------AESSMFNL  204 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------------HTTTTS-----CH--HHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------------HHhccc-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            764        7788888877             333332     33  7999999999999998       77778876


Q ss_pred             HH-HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 018756          222 EA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE  261 (351)
Q Consensus       222 e~-qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se  261 (351)
                      -+ ....  +..|.+||++++.||+++.++|.+|...+...
T Consensus       205 ~~~e~e~--~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~  243 (256)
T 1zww_A          205 LEMDIEQ--VSQLSALVQAQLEYHKQAVQILQQVTVRLEER  243 (256)
T ss_dssp             HHTTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 2333  68899999999999999999999999988653

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.62  E-value=4.2e-16  Score=116.34  Aligned_cols=55  Identities=29%  Similarity=0.657  Sum_probs=51.2

Q ss_pred             eEEEEecCCCCCCCCC-ccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKE-LSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~E-Lsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.++.++| |+|++||+|.|+++.++|||.|++ +|+.||||+|||+.|
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            5699999999998887 999999999999999999999997 799999999999875

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.61  E-value=1.3e-15  Score=116.96  Aligned_cols=63  Identities=25%  Similarity=0.220  Sum_probs=57.9

Q ss_pred             cceEEEEecCCCCC--CCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          282 VYFLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       282 ~~~~~~ALydf~a~--~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ....|+|+|+|.+.  +++||+|++||+|.|+...++|||.|+++|+.||||+|||+.+...|.+
T Consensus         8 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~s   72 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPSS   72 (73)
T ss_dssp             CSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCCSCC
T ss_pred             cceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCCCCC
Confidence            34579999999976  9999999999999999999999999999999999999999999887765

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.60  E-value=2.2e-15  Score=114.01  Aligned_cols=56  Identities=29%  Similarity=0.452  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ...++|+|||.+..++||+|++||+|.|++..++|||.|++  +|+.||||+|||+++
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            45789999999999999999999999999999999999997  699999999999986

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=112.92  Aligned_cols=62  Identities=35%  Similarity=0.565  Sum_probs=58.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...|+|+|+|.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+...|.+
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~p~~   78 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS   78 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCCCSC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCCCCC
Confidence            45699999999999999999999999999998999999999999999999999999988875

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=8.5e-15  Score=111.87  Aligned_cols=62  Identities=29%  Similarity=0.465  Sum_probs=57.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee---CCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~---~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+..   .++|||.|+++|+.||||++||+.+.+.|.+
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   72 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS   72 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSCCC
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCCCC
Confidence            4579999999999999999999999999987   4789999999999999999999999887765

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.56  E-value=2.9e-15  Score=117.43  Aligned_cols=61  Identities=31%  Similarity=0.474  Sum_probs=57.5

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|.
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~p~   78 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE   78 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCCCC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCCCC
Confidence            4569999999999999999999999999999999999999999999999999999988875

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.56  E-value=7.1e-15  Score=112.33  Aligned_cols=63  Identities=29%  Similarity=0.451  Sum_probs=58.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCCc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSN  345 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~sk  345 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~   69 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSG   69 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCCSCCS
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCCCCCC
Confidence            457999999999999999999999999999989999999999999999999999998888764

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.56  E-value=6.7e-15  Score=110.79  Aligned_cols=60  Identities=32%  Similarity=0.452  Sum_probs=54.8

Q ss_pred             eEEEEecCCCCC--CCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756          284 FLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       284 ~~~~ALydf~a~--~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ..|+|+|+|.+.  .+++|+|++||+|.|+...++|||.|.++|+.||||++||+.+.+...
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            368999999998  999999999999999999999999999999999999999999866543

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.56  E-value=6.8e-15  Score=112.55  Aligned_cols=60  Identities=25%  Similarity=0.484  Sum_probs=57.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.++|
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~p   72 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLP   72 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCCCC
Confidence            457999999999999999999999999999989999999999999999999999998887

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.55  E-value=1.3e-14  Score=109.22  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|+|.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGPS   66 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCSCC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCCCC
Confidence            457999999999999999999999999999989999999999999999999999876644

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.55  E-value=8.4e-15  Score=108.52  Aligned_cols=58  Identities=29%  Similarity=0.473  Sum_probs=52.5

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeee-CCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      .|+|+|+|.+..+++|+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+.+.|
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   61 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET   61 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC---
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCCC
Confidence            58999999999999999999999999998 78999999999999999999999886544

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.55  E-value=1.1e-14  Score=110.86  Aligned_cols=61  Identities=30%  Similarity=0.518  Sum_probs=56.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ..|+|+|||.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+.+.|..
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~~~~   65 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEHH   65 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSCCCC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCCccc
Confidence            4689999999999999999999999999885  889999999999999999999998877653

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=108.81  Aligned_cols=58  Identities=21%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|++||+|.|+...++|||.|.++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCC
Confidence            3569999999999999999999999999999999999999999999999999998754

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.54  E-value=9.1e-15  Score=110.17  Aligned_cols=56  Identities=38%  Similarity=0.574  Sum_probs=52.7

Q ss_pred             eEEEEecCCCCC--CCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~--~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ..|+|+|+|.+.  +++||+|++||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBC
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcC
Confidence            469999999999  89999999999999999999999999999999999999998764

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.54  E-value=9.5e-15  Score=106.69  Aligned_cols=55  Identities=27%  Similarity=0.528  Sum_probs=52.3

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      .|+|+|+|.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            5899999999999999999999999999989999999999999999999999864

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=110.21  Aligned_cols=58  Identities=24%  Similarity=0.449  Sum_probs=54.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      +.|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            5699999999999999999999999999999999999999999999999999987654

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.54  E-value=2.5e-14  Score=111.49  Aligned_cols=63  Identities=29%  Similarity=0.311  Sum_probs=58.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee--CCCCeeEEEECCeeeEecCCceeeccCCCCCc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQRIPVSN  345 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~--~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~sk  345 (351)
                      ...|+|+|||.+..++||+|++||+|.|+..  .++|||.|+++|+.||||++||+.+...|.|.
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~sg   81 (81)
T 1x43_A           17 NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGPSSG   81 (81)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCCCCC
T ss_pred             CeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCCCCC
Confidence            4679999999999999999999999999988  46899999999999999999999998888763

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=109.98  Aligned_cols=60  Identities=20%  Similarity=0.324  Sum_probs=55.5

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ....|+|+|+|.+..+++|+|++||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             SCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            346799999999999999999999999999988899999999999999999999987654

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.54  E-value=1.3e-14  Score=106.86  Aligned_cols=55  Identities=33%  Similarity=0.523  Sum_probs=52.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            4689999999999999999999999999998999999999999999999999876

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.54  E-value=9.8e-15  Score=106.62  Aligned_cols=55  Identities=29%  Similarity=0.393  Sum_probs=51.7

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPsnYVe~i  338 (351)
                      +.|+|+|||.+..++||+|++||+|.|++..++|||.|+..  |+.||||++||+.+
T Consensus         1 p~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            35899999999999999999999999999989999999987  99999999999876

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.54  E-value=1.3e-14  Score=107.80  Aligned_cols=56  Identities=27%  Similarity=0.519  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ...|+|+|||.+..++||+|.+||+|.|++..  ++|||.|+++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            45799999999999999999999999999874  789999999999999999999876

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.54  E-value=1.4e-14  Score=106.48  Aligned_cols=56  Identities=34%  Similarity=0.561  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            45799999999999999999999999999998999999999999999999999864

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.53  E-value=1.4e-14  Score=105.72  Aligned_cols=55  Identities=33%  Similarity=0.465  Sum_probs=52.3

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      .|+|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            5899999999999999999999999999989999999999999999999999764

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.1e-14  Score=110.33  Aligned_cols=63  Identities=25%  Similarity=0.372  Sum_probs=57.8

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...|.+
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~s   69 (70)
T 2ega_A            7 GLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS   69 (70)
T ss_dssp             CCBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCCCCC
T ss_pred             CCcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCCCCC
Confidence            345699999999999999999999999999999999999999999999999999998876655

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=9e-15  Score=108.21  Aligned_cols=56  Identities=34%  Similarity=0.566  Sum_probs=53.0

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ..++|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             eEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            56899999999999999999999999999989999999999999999999998764

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=108.48  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...++|+|||.+..++||+|.+||+|.|++..+++||.|+++|+.||||++||+.+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            35689999999999999999999999999998999999999999999999999988653

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.53  E-value=1e-14  Score=110.16  Aligned_cols=60  Identities=27%  Similarity=0.330  Sum_probs=55.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC---CCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~---d~gWweG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ..|+|+|||.+..++||+|++||+|.|+...   ++|||.|+++|+.||||++||+.+.+.+.
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   66 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD   66 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCCCC
Confidence            4689999999999999999999999999987   78999999999999999999999876543

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.52  E-value=1.9e-14  Score=108.19  Aligned_cols=56  Identities=39%  Similarity=0.545  Sum_probs=53.0

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      .|+|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||+|||+.+..
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL   58 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCC
Confidence            58999999999999999999999999999899999999999999999999998654

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.52  E-value=2.4e-14  Score=111.58  Aligned_cols=59  Identities=22%  Similarity=0.330  Sum_probs=54.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCC-eeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~g-WweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+.+++||+|.+||+|.|++..+++ ||.|+++|+.||||++||+.+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            45799999999999999999999999999988777 999999999999999999998654

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.52  E-value=2.1e-14  Score=105.17  Aligned_cols=55  Identities=38%  Similarity=0.715  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4689999999999999999999999999998999999999999999999999864

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.52  E-value=2.1e-14  Score=106.69  Aligned_cols=58  Identities=36%  Similarity=0.699  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...++|+|+|.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3568999999999999999999999999998899999999999999999999998754

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.52  E-value=2.2e-14  Score=104.79  Aligned_cols=55  Identities=29%  Similarity=0.561  Sum_probs=52.0

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            4689999999999999999999999999998999999999999999999999864

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.7e-14  Score=109.19  Aligned_cols=62  Identities=26%  Similarity=0.390  Sum_probs=56.5

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE----CCeeeEecCCceeeccCCCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC----KGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~----~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ....|+|+|||.+. ++||+|.+||+|.|++..++|||.|++    +|+.||||++||+.+.+.|.|
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~~~s   74 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPSS   74 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCSCSSC
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCCCCCC
Confidence            34579999999999 999999999999999999999999998    479999999999999887765

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.52  E-value=2.4e-14  Score=108.57  Aligned_cols=62  Identities=21%  Similarity=0.415  Sum_probs=56.5

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee--CCCCeeEEE-ECCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~--~d~gWweG~-~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+..  .++|||.|+ .+|+.||||++||+.+.+.|++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   70 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   70 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCCC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCCCC
Confidence            4579999999999999999999999999998  688999997 6999999999999999877654

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.52  E-value=1e-14  Score=109.77  Aligned_cols=58  Identities=28%  Similarity=0.465  Sum_probs=53.8

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+..-
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            3689999999999999999999999999998999999999999999999999987543

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.52  E-value=3.3e-14  Score=107.60  Aligned_cols=62  Identities=23%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEE--CCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGEC--KGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~--~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...|+|+|||.+..+++|+|.+||+|.|+... ++|||.|+.  +|+.||||++||+.+.+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~~   70 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHT   70 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTSSCC
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCcCCC
Confidence            35799999999999999999999999999987 899999999  899999999999998776554

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.51  E-value=3e-14  Score=103.48  Aligned_cols=56  Identities=36%  Similarity=0.597  Sum_probs=52.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ..|+|+|||.+..+++|+|.+||+|.|++..++|||.|..+|+.||||++||+++.
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            35899999999999999999999999999999999999999999999999999753

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.51  E-value=2.5e-14  Score=110.21  Aligned_cols=60  Identities=22%  Similarity=0.312  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECC---eeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG---KAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~G---k~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|   +.||||++||+.+....
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~   72 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSG   72 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCC
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCC
Confidence            4579999999999999999999999999998899999999866   99999999999987643

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.51  E-value=2.7e-14  Score=104.00  Aligned_cols=55  Identities=25%  Similarity=0.451  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|+|.+..+++|+|.+||+|.|+...++|||.|+.+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            4689999999999999999999999999999999999999999999999999875

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-14  Score=108.06  Aligned_cols=60  Identities=20%  Similarity=0.320  Sum_probs=55.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC---CCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~---d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..   ++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGPS   69 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCST
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            45799999999999999999999999999987   8999999999999999999999886543

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=1.4e-14  Score=109.69  Aligned_cols=61  Identities=23%  Similarity=0.400  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...|+|+|+|.+..+++|+|.+||+|.|+.. ++|||.|+++|+.||||++||+.+.+.+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   68 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS   68 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCCCCC
Confidence            4568999999999999999999999999988 789999999999999999999998776544

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.51  E-value=1.9e-14  Score=105.95  Aligned_cols=54  Identities=24%  Similarity=0.370  Sum_probs=51.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCcee
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE  336 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe  336 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            467999999999999999999999999999888999999999999999999997

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=5.5e-14  Score=109.53  Aligned_cols=62  Identities=19%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+...++.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   69 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPD   69 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCCCC
Confidence            35689999999999999999999999999999999999999999999999999998765543

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.51  E-value=3.8e-14  Score=106.52  Aligned_cols=59  Identities=36%  Similarity=0.450  Sum_probs=54.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...++|+|+|.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCSC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCCC
Confidence            45699999999999999999999999999998999999999999999999999987543

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.51  E-value=1.5e-14  Score=109.70  Aligned_cols=60  Identities=18%  Similarity=0.309  Sum_probs=50.6

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccCCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ..|+|+|||.+..++||+|++||+|.|++. ++|||.|+ .+|+.||||+|||+.+.+.|++
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~~~~~   65 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLEHHHH   65 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC------
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCCCCCC
Confidence            468999999999999999999999999988 47999999 4899999999999999998875

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.51  E-value=3.2e-14  Score=105.76  Aligned_cols=55  Identities=35%  Similarity=0.615  Sum_probs=52.4

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            4689999999999999999999999999998999999999999999999999876

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=6.7e-14  Score=110.92  Aligned_cols=59  Identities=32%  Similarity=0.457  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCC--CCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~--~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+.  .++||+|++||+|.|+...++|||.|.++|+.||||++||+.+.+.
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCSS
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCCC
Confidence            4579999999955  9999999999999999999999999999999999999999998653

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=106.73  Aligned_cols=58  Identities=26%  Similarity=0.397  Sum_probs=53.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCC
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCC
Confidence            3569999999999999999999999999999899999999999999999999998754

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.51  E-value=3e-14  Score=107.36  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=51.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECC-----eeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-----KAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~G-----k~G~FPsnYVe~i  338 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|++.|     +.||||+|||+.+
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            3579999999999999999999999999999999999999865     9999999999875

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.51  E-value=3.5e-14  Score=103.39  Aligned_cols=55  Identities=35%  Similarity=0.722  Sum_probs=52.0

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4689999999999999999999999999998999999999999999999999864

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.51  E-value=3.3e-14  Score=103.53  Aligned_cols=55  Identities=29%  Similarity=0.597  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|+|.+..++||+|.+||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            4689999999999999999999999999998999999999999999999999875

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.50  E-value=1.4e-14  Score=109.12  Aligned_cols=60  Identities=28%  Similarity=0.436  Sum_probs=55.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGPS   66 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSSC
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCCC
Confidence            356899999999999999999999999999888999999999999999999999886644

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.50  E-value=3.4e-14  Score=104.27  Aligned_cols=55  Identities=29%  Similarity=0.486  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|++||+|.|++..  ++|||.|+.+|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            4689999999999999999999999999886  789999999999999999999864

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.2e-14  Score=109.71  Aligned_cols=59  Identities=25%  Similarity=0.392  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGT   68 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCC
Confidence            35799999999999999999999999999988899999999999999999999987654

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.50  E-value=3.8e-14  Score=104.30  Aligned_cols=56  Identities=23%  Similarity=0.419  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ...|+|+|||.+..+++|+|.+||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            35689999999999999999999999999998999999999999999999999875

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.50  E-value=3e-14  Score=105.66  Aligned_cols=57  Identities=28%  Similarity=0.489  Sum_probs=53.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ...|+|+|||.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            356999999999999999999999999999888999999999999999999999874

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1e-13  Score=109.71  Aligned_cols=62  Identities=29%  Similarity=0.430  Sum_probs=56.3

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++.|+.||||++||+.+.....
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   77 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIET   77 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSCCS
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCcCc
Confidence            34579999999999999999999999999999899999999999999999999998765543

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.50  E-value=3.2e-14  Score=105.26  Aligned_cols=56  Identities=29%  Similarity=0.350  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~  339 (351)
                      ..|+|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            458999999999999999999999999999999999999  58999999999999864

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=5.6e-14  Score=108.63  Aligned_cols=59  Identities=25%  Similarity=0.343  Sum_probs=55.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...+++||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCc
Confidence            45799999999999999999999999999998999999999999999999999988653

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=106.69  Aligned_cols=58  Identities=34%  Similarity=0.473  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...++|+|+|.+..++||+|++||+|.|++..++|||.|+++|+.||||.+||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG   74 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCC
Confidence            4579999999999999999999999999999999999999999999999999998754

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.49  E-value=5.4e-14  Score=109.07  Aligned_cols=61  Identities=26%  Similarity=0.405  Sum_probs=55.6

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCC----CCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d----~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ..|+|+|||.+..++||+|++||+|.|+...+    +|||.|+++|+.||||++||+.+...|.+
T Consensus        14 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   78 (79)
T 1uhc_A           14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS   78 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCCC
T ss_pred             eEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCCCCc
Confidence            46899999999999999999999999999876    89999999999999999999998766543

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.49  E-value=3.2e-14  Score=106.87  Aligned_cols=59  Identities=27%  Similarity=0.463  Sum_probs=52.9

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+..++||+|++||+|.|++..++|||.|+ .+|+.||||++||+.+.+.+
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~   63 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHHH   63 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC---
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCCCC
Confidence            468999999999999999999999999999899999999 79999999999999876543

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=5.2e-14  Score=106.50  Aligned_cols=58  Identities=31%  Similarity=0.523  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCC
Confidence            45799999999999999999999999999875  88999999999999999999998754

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.49  E-value=8.2e-14  Score=106.24  Aligned_cols=59  Identities=31%  Similarity=0.501  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+.+.
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCcc
Confidence            35799999999999999999999999999885  889999999999999999999987553

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.3e-14  Score=109.18  Aligned_cols=59  Identities=27%  Similarity=0.473  Sum_probs=55.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A           10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             ceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCc
Confidence            46799999999999999999999999999998999999999999999999999998653

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.49  E-value=4.6e-14  Score=105.47  Aligned_cols=57  Identities=25%  Similarity=0.302  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCC-CCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a-~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~  339 (351)
                      ...++|+|+|.+ ..++||+|.+||+|.|+...++|||.|+  .+|+.||||+|||+.+.
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            356899999999 9999999999999999999899999999  58999999999999764

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.4e-14  Score=105.54  Aligned_cols=57  Identities=26%  Similarity=0.486  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ...++|+|||.+..++||+|.+||+|.|+...+++||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS   63 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcC
Confidence            457999999999999999999999999999989999999999999999999999873

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.49  E-value=5.3e-14  Score=106.46  Aligned_cols=58  Identities=31%  Similarity=0.476  Sum_probs=53.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...++|+|||.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            4569999999999999999999999999999999999999999999999999998743

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.49  E-value=2.7e-14  Score=109.07  Aligned_cols=59  Identities=29%  Similarity=0.394  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEee-eCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~-~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+. ..++|||.|+++|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            356999999999999999999999999887 46789999999999999999999987653

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.49  E-value=6e-14  Score=102.39  Aligned_cols=54  Identities=28%  Similarity=0.527  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      ..++|+|+|.+..+++|+|.+||+|.|+...++|||.|+.+|+.||||++||++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            468999999999999999999999999999889999999999999999999975

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.48  E-value=5.8e-14  Score=105.95  Aligned_cols=58  Identities=29%  Similarity=0.412  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...+++||.|+++|+.||||++||+.+..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            4569999999999999999999999999999889999999999999999999998754

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.48  E-value=4.1e-14  Score=107.49  Aligned_cols=59  Identities=29%  Similarity=0.375  Sum_probs=52.9

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+...+
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~~   67 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEP   67 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC---
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCCC
Confidence            468999999999999999999999999999999999999  68999999999999876543

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.48  E-value=6.2e-14  Score=110.66  Aligned_cols=59  Identities=22%  Similarity=0.374  Sum_probs=54.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|.++|+.||||++||+.+.+.
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCTT
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCCC
Confidence            45799999999999999999999999999998899999999999999999999987543

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.48  E-value=6.3e-14  Score=106.62  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=54.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|||.+..+++|+|.+||+|.|+...+++||.|+.+|+.||||++||+.+.+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   64 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ   64 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC--
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCCC
Confidence            356899999999999999999999999999989999999999999999999999987643

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.4e-14  Score=107.88  Aligned_cols=57  Identities=23%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCC-------CCCccccCCCEEEEee-eCCCCeeEEEECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAAS-------EKELSLGVGDYVVVRK-VSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~-------~~ELsf~~GD~I~Vl~-~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ...++|+|||.+..       +++|+|++||+|.|+. ..++|||.|+++|+.||||+|||+.+.
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMS   71 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEcc
Confidence            45699999999999       9999999999999997 578899999999999999999999873

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.48  E-value=4.3e-14  Score=102.70  Aligned_cols=54  Identities=30%  Similarity=0.539  Sum_probs=50.3

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i  338 (351)
                      .++|+|||.+..+++|+|.+||+|.|++..++|||.|+ .+|+.||||++||+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            58999999999999999999999999999889999999 6899999999999863

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.48  E-value=5.3e-14  Score=106.76  Aligned_cols=57  Identities=23%  Similarity=0.404  Sum_probs=50.9

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEee-eCCCCeeEEE-ECCeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGE-CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~-~~d~gWweG~-~~Gk~G~FPsnYVe~i~~  340 (351)
                      ..|+|+|||.+..++||+|.+||+|.|+. ..++|||.|+ .+|+.||||++||+.+..
T Consensus        12 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   70 (71)
T 1csk_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (71)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC---
T ss_pred             CEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEccC
Confidence            56999999999999999999999999998 7789999999 689999999999987643

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9.5e-14  Score=107.58  Aligned_cols=60  Identities=35%  Similarity=0.550  Sum_probs=55.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNA   66 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSCS
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCCC
Confidence            457999999999999999999999999999988999999999999999999999886543

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.47  E-value=7.9e-14  Score=102.77  Aligned_cols=56  Identities=29%  Similarity=0.509  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeee-EecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G-~FPsnYVe~i~  339 (351)
                      ..++|+|||.+..++||+|++||+|.|+...++|||.|+++|+.| |||++||+.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            458999999999999999999999999999899999999999886 99999999874

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.7e-14  Score=105.72  Aligned_cols=58  Identities=26%  Similarity=0.427  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...++|+|||.+..++||+|.+||+|.|++..++|||.|++.|+.||||++||+.+..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKD   65 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccC
Confidence            3568999999999999999999999999998889999999999999999999999865

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.9e-14  Score=109.71  Aligned_cols=58  Identities=24%  Similarity=0.401  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee--CCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~--~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+..  .++|||.|+++|+.||||++||+.+..
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   67 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA   67 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCC
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCC
Confidence            4579999999999999999999999999987  889999999999999999999998754

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=7.3e-14  Score=105.42  Aligned_cols=59  Identities=24%  Similarity=0.379  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCee-eEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-GWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~-G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|++.+.. ||||++||+.+.+.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            356999999999999999999999999999888999999998777 99999999987653

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.47  E-value=6.4e-14  Score=100.82  Aligned_cols=52  Identities=37%  Similarity=0.716  Sum_probs=49.0

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCC-CCeeEEEECCeeeEecCCcee
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPSANVE  336 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d-~gWweG~~~Gk~G~FPsnYVe  336 (351)
                      .|+|+|+|.+..++||+|++||+|.|++..+ +|||.|+.+|+.||||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            4899999999999999999999999999885 799999999999999999985

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=7.2e-14  Score=104.98  Aligned_cols=55  Identities=22%  Similarity=0.366  Sum_probs=51.9

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|+|.+..+++|+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            358999999999999999999999999999899999999 5999999999999987

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=7.8e-14  Score=103.25  Aligned_cols=54  Identities=30%  Similarity=0.467  Sum_probs=51.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      ..++|+|||.+..++||+|++||+|.|+...++|||.|+..|+.||||++||+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            568999999999999999999999999999899999999999999999999985

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=9.4e-14  Score=106.67  Aligned_cols=59  Identities=29%  Similarity=0.353  Sum_probs=54.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+..  |+.||||++||+.+.+-+
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~   66 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPEL   66 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSSC
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCCC
Confidence            56999999999999999999999999999999999999984  899999999999986543

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=107.10  Aligned_cols=61  Identities=15%  Similarity=0.296  Sum_probs=55.2

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCC-CCeeEEEEC-CeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECK-GKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d-~gWweG~~~-Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|+|.+..++||+|++||+|.|+...+ +|||.|+.. |+.||||++||+.+...++
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   75 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSGP   75 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCCCS
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCCCC
Confidence            457999999999999999999999999999875 899999986 9999999999999876554

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.47  E-value=9.5e-14  Score=101.62  Aligned_cols=55  Identities=25%  Similarity=0.331  Sum_probs=51.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeee-CCCCeeEEEE--CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++. .++|||.|+.  +|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            468999999999999999999999999998 4899999998  899999999999864

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.47  E-value=7.5e-14  Score=103.21  Aligned_cols=55  Identities=22%  Similarity=0.437  Sum_probs=50.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i  338 (351)
                      ...|+|+|||.+..++||+|++||+|.|++.. +|||.|+  .+|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            45799999999999999999999999999885 5999999  5899999999999864

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.47  E-value=4.7e-14  Score=113.39  Aligned_cols=64  Identities=27%  Similarity=0.373  Sum_probs=57.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCCcc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV  346 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~skv  346 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+.+...+
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~~~~~   81 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELG   81 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCSSTTT
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCCcccc
Confidence            4579999999999999999999999999998899999999999999999999999876554433

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=109.53  Aligned_cols=62  Identities=34%  Similarity=0.575  Sum_probs=56.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+...+++||.|+++|+.||||.+||+.+.+.|..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   78 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLG   78 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCCCSS
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCcccc
Confidence            35689999999999999999999999999999999999999999999999999998766543

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.46  E-value=8e-14  Score=106.03  Aligned_cols=58  Identities=29%  Similarity=0.462  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCC-CCCCCccccCCCEEEEeee-CCCCeeEEEEC--CeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTA-ASEKELSLGVGDYVVVRKV-SPSGWSEGECK--GKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a-~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~~--Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+ ..++||+|.+||+|.|+.. .++|||.|++.  |+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   68 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCC
Confidence            457999999996 8999999999999999987 78999999987  9999999999998754

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=6.4e-14  Score=105.13  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=50.0

Q ss_pred             ceEEEEecCCCCCCCCC-ccccCCCEEEEeee-CCCCeeEEE--ECCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKE-LSLGVGDYVVVRKV-SPSGWSEGE--CKGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~E-Lsf~~GD~I~Vl~~-~d~gWweG~--~~Gk~G~FPsnYVe~i  338 (351)
                      ...|+|+|||.+..+++ |+|++||+|.|+.. .++|||.|+  ++|+.||||+|||+.+
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            45799999999988777 99999999999854 678999999  6899999999999876

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=105.64  Aligned_cols=58  Identities=40%  Similarity=0.557  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|++||+|.|++..  ++|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            35699999999999999999999999999887  45999999999999999999998754

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=106.45  Aligned_cols=58  Identities=29%  Similarity=0.463  Sum_probs=53.8

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~  340 (351)
                      ....|+|+|+|.+..++||+|.+||+|.|++. ++|||.|++  +|+.||||++||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             SCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            45679999999999999999999999999998 899999998  89999999999998754

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=107.40  Aligned_cols=59  Identities=24%  Similarity=0.419  Sum_probs=53.5

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCC--CCeeEEEECCeeeEecCCceeeccC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d--~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...+  +|||.|+++|+.||||.+||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            3457999999999999999999999999998875  8999999999999999999987643

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.46  E-value=8e-14  Score=103.47  Aligned_cols=54  Identities=26%  Similarity=0.465  Sum_probs=50.8

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--------CeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--------GKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--------Gk~G~FPsnYVe~i  338 (351)
                      .|+|+|+|.+..+++|+|.+||+|.|++..++|||.|+..        |+.||||++||+.+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            5899999999999999999999999999989999999976        89999999999875

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.46  E-value=7.8e-14  Score=106.62  Aligned_cols=56  Identities=23%  Similarity=0.450  Sum_probs=52.5

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      .|+|+|||.+ +++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.+.
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            3789999998 8999999999999999998999999999999999999999998765

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=1.1e-13  Score=111.59  Aligned_cols=60  Identities=32%  Similarity=0.431  Sum_probs=54.6

Q ss_pred             cceEEEEecCCCCCC------CCCccccCCCEEEEe-eeCCCCeeEEEE-CCeeeEecCCceeeccCC
Q 018756          282 VYFLAEAIHPFTAAS------EKELSLGVGDYVVVR-KVSPSGWSEGEC-KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       282 ~~~~~~ALydf~a~~------~~ELsf~~GD~I~Vl-~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~  341 (351)
                      ....|+|+|||.+..      ++||+|.+||+|.|+ ...++|||.|++ +|+.||||+|||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            346799999999988      999999999999999 778899999999 999999999999987654

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=104.11  Aligned_cols=58  Identities=28%  Similarity=0.420  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..+++|+|.+||+|.|++..++|||.|+. +|+.||||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL   64 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECcc
Confidence            45799999999999999999999999999998999999998 99999999999998643

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.9e-14  Score=106.74  Aligned_cols=57  Identities=25%  Similarity=0.313  Sum_probs=52.9

Q ss_pred             eEEEEecCCCC-CCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a-~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~~  340 (351)
                      ..++|+|+|.+ ..++||+|.+||+|.|+...++|||.|+  .+|+.||||+|||+.+.+
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            46899999999 9999999999999999999899999999  689999999999998743

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.46  E-value=1.2e-13  Score=104.97  Aligned_cols=56  Identities=27%  Similarity=0.430  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ...++|+|||.+..++||+|.+||+|.|+...+++||.|+.  +|+.||||++||+++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            35689999999999999999999999999998999999998  899999999999876

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.45  E-value=1.2e-13  Score=100.45  Aligned_cols=54  Identities=37%  Similarity=0.646  Sum_probs=50.4

Q ss_pred             eEEEEecCC-CCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecCCceee
Q 018756          284 FLAEAIHPF-TAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf-~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPsnYVe~  337 (351)
                      +.|+|+||| .+..+++|+|++||+|.|+...++|||.|+..  |+.||||++||+.
T Consensus         1 p~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            1 PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             CEEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            358999999 89999999999999999999989999999986  9999999999974

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=108.68  Aligned_cols=63  Identities=22%  Similarity=0.426  Sum_probs=56.2

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeee--CCCCeeEEE-ECCeeeEecCCceeeccCCCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~--~d~gWweG~-~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ....|+|+|+|.+..++||+|.+||+|.|++.  .++|||.|+ ++|+.||||.+||+.+...++.
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   81 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   81 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSSC
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCCC
Confidence            34679999999999999999999999999998  688999999 6999999999999998765543

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.45  E-value=1.5e-13  Score=101.43  Aligned_cols=57  Identities=28%  Similarity=0.443  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee-CCCCeeEEEECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+.. .+.+||.|+.+|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            3569999999999999999999999999984 45679999999999999999999864

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=105.24  Aligned_cols=56  Identities=32%  Similarity=0.445  Sum_probs=52.2

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceee
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      ....|+|+|||.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||++
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            34679999999999999999999999999998889999999999999999999974

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=103.93  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=53.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECC--eeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~G--k~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|++||+|.|++..+++||.|+..+  +.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG   66 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSS
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCC
Confidence            3468999999999999999999999999998889999999865  999999999998754

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=8.1e-14  Score=107.20  Aligned_cols=58  Identities=36%  Similarity=0.704  Sum_probs=54.2

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+..
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCc
Confidence            4579999999999999999999999999998899999999999999999999998753

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.45  E-value=1.3e-13  Score=101.88  Aligned_cols=55  Identities=29%  Similarity=0.504  Sum_probs=51.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+.  +|+.||||++||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            4589999999999999999999999999998999999998  899999999999875

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=1.5e-13  Score=105.28  Aligned_cols=57  Identities=28%  Similarity=0.518  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|++. ++|||.|+++|+.||||.+||+.+..
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCC
Confidence            4579999999999999999999999999988 57999999999999999999998754

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.1e-13  Score=100.95  Aligned_cols=55  Identities=29%  Similarity=0.398  Sum_probs=51.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+..  |+.||||++||+.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            35899999999999999999999999999989999999984  89999999999876

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=2e-13  Score=104.91  Aligned_cols=59  Identities=25%  Similarity=0.398  Sum_probs=54.6

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC---Cee------eEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK---GKA------GWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~---Gk~------G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+..++||+|++||+|.|++..++|||.|+..   |+.      ||||++||+.+.++.
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~~   75 (77)
T 2d8j_A            8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGPS   75 (77)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCCC
T ss_pred             CEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCCcC
Confidence            47999999999999999999999999999989999999986   998      999999999987654

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=103.80  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+ .+|+.||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECCC
Confidence            4569999999999999999999999999988 48999999 799999999999998754

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=103.84  Aligned_cols=57  Identities=30%  Similarity=0.512  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCC-CCCCCccccCCCEEEEeee-CCCCeeEEEEC--CeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTA-ASEKELSLGVGDYVVVRKV-SPSGWSEGECK--GKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a-~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~~--Gk~G~FPsnYVe~i~  339 (351)
                      ...|+|+|||.+ ..++||+|.+||+|.|+.. .++|||.|++.  |+.||||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            357999999995 8999999999999999985 78999999986  999999999998764

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.45  E-value=2e-13  Score=102.98  Aligned_cols=57  Identities=35%  Similarity=0.553  Sum_probs=52.7

Q ss_pred             eEEEEecCCC-CCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFT-AASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~-a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPsnYVe~i~~  340 (351)
                      ..|+|+|||+ +..++||+|.+||+|.|++..++|||.|+..  |+.||||++||+.+.+
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            4689999996 9999999999999999999989999999986  9999999999998754

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.45  E-value=1.1e-13  Score=107.15  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=53.0

Q ss_pred             cceEEEEecCCCCCCCC-CccccCCCEEEEeeeCCC-----CeeEEEE-CCeeeEecCCceeeccCC
Q 018756          282 VYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPS-----GWSEGEC-KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~-ELsf~~GD~I~Vl~~~d~-----gWweG~~-~Gk~G~FPsnYVe~i~~~  341 (351)
                      ....|+|+|||.+..++ ||+|++||+|.|++..++     |||.|+. +|+.||||++||+.+.+.
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   79 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC---
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCCC
Confidence            45679999999999999 999999999999998876     9999998 899999999999988654

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=1e-13  Score=104.68  Aligned_cols=59  Identities=29%  Similarity=0.427  Sum_probs=54.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..++|+|+|.+..++||+|.+||+|.|++..++|||.|+  .+|+.||||++||+.+...+
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPS   68 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCTT
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCCC
Confidence            468999999999999999999999999998889999999  68999999999999876543

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=1.6e-13  Score=109.74  Aligned_cols=59  Identities=34%  Similarity=0.594  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||.+||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            34689999999999999999999999999875  789999999999999999999998654

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.44  E-value=2e-13  Score=104.18  Aligned_cols=60  Identities=20%  Similarity=0.330  Sum_probs=54.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ..|+|+|+|.+..++||+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+.+++..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   68 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSARAA   68 (72)
T ss_dssp             EEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCCCSS
T ss_pred             eEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCCccc
Confidence            469999999999999999999999999987 679999995 999999999999998776543

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=2.6e-13  Score=104.48  Aligned_cols=61  Identities=28%  Similarity=0.426  Sum_probs=55.0

Q ss_pred             ceEEEEecCCCCC-CCCCccccCCCEEEEeeeC-CCCeeEEE-ECCeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAA-SEKELSLGVGDYVVVRKVS-PSGWSEGE-CKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~-~~~ELsf~~GD~I~Vl~~~-d~gWweG~-~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|||.+. .++||+|.+||+|.|+... ++|||.|+ .+|+.||||.+||+.+...+.
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~~~   72 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGK   72 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCCCC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCCCC
Confidence            3579999999999 9999999999999999885 79999999 799999999999999866544

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.44  E-value=1.7e-13  Score=102.82  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECC--eeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~G--k~G~FPsnYVe~i~  339 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|++.+  +.||||++||+.+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECC
Confidence            3569999999999999999999999999999899999999865  99999999999874

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.7e-13  Score=105.62  Aligned_cols=58  Identities=26%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCC-------CCCccccCCCEEEEeeeCC-CCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAAS-------EKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~-------~~ELsf~~GD~I~Vl~~~d-~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..       +++|+|.+||+|.|+...+ +|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCC
Confidence            45799999999998       8999999999999998866 4899999999999999999998743

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3e-13  Score=102.03  Aligned_cols=58  Identities=29%  Similarity=0.346  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~  340 (351)
                      ...++|+|+|.+..++||+|.+||+|.|++..++|||.|+.  +|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG   66 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTC
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCC
Confidence            35689999999999999999999999999998999999998  49999999999998754

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.1e-13  Score=108.36  Aligned_cols=59  Identities=29%  Similarity=0.445  Sum_probs=54.3

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecCCceeeccC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQR  340 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPsnYVe~i~~  340 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++.  |+.||||++||+.+..
T Consensus        16 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           16 EYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             GSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             cceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            3567999999999999999999999999999889999999986  9999999999998754

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.44  E-value=1.1e-13  Score=100.69  Aligned_cols=52  Identities=17%  Similarity=0.456  Sum_probs=49.1

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCC-CCeeEEEE--CCeeeEecCCcee
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGEC--KGKAGWFPSANVE  336 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d-~gWweG~~--~Gk~G~FPsnYVe  336 (351)
                      .|+|+|+|.+..++||+|++||+|.|++..+ +|||.|+.  +|+.||||++||+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            4899999999999999999999999998876 79999999  9999999999996

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.44  E-value=2.6e-13  Score=108.04  Aligned_cols=64  Identities=20%  Similarity=0.339  Sum_probs=55.1

Q ss_pred             cceEEEEecCCCCCCCC-CccccCCCEEEEeeeCCC-----CeeEEEE-CCeeeEecCCceeeccCCCCCc
Q 018756          282 VYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPS-----GWSEGEC-KGKAGWFPSANVEKRQRIPVSN  345 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~-ELsf~~GD~I~Vl~~~d~-----gWweG~~-~Gk~G~FPsnYVe~i~~~p~sk  345 (351)
                      ....|+|+|||.+..++ ||+|++||+|.|+...+.     |||.|+. +|+.||||++||+.+...++..
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~~~~   83 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKKIE   83 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC----
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCCCCc
Confidence            34679999999999999 999999999999998776     9999998 8999999999999987665443

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=103.35  Aligned_cols=57  Identities=26%  Similarity=0.401  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~  339 (351)
                      ...|+|+|+|.+..+++|+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            3568999999999999999999999999998889999999 79999999999998764

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=5.1e-13  Score=103.56  Aligned_cols=59  Identities=29%  Similarity=0.580  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC-----CeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~-----Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|++..++|||.|++.     |+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            346899999999999999999999999999988999999985     48999999999988654

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=99.43  E-value=2.3e-11  Score=112.80  Aligned_cols=207  Identities=14%  Similarity=0.199  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhh
Q 018756           11 LKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTK   87 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~   87 (351)
                      +..++.|-.|.|...+|++-     -. .|+.=-...+++..+..   ..+.+||+   |+.++.++..+       ...
T Consensus        28 ~~K~~~Ra~q~~~~k~G~~e-----~T-~D~~Fe~~~~~f~~~e~---~~~~l~k~~k~y~~~~~~~~~~-------~~~   91 (251)
T 2fic_A           28 VQKKLTRAQEKVLQKLGKAD-----ET-KDEQFEQCVQNFNKQLT---EGTRLQKDLRTYLASVKAMHEA-------SKK   91 (251)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred             HHHHHHHhhHHHHHHcCCcc-----cc-CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence            35667777899999998332     22 24432112233333332   34566666   66666665543       236


Q ss_pred             hhHHHhh-hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhh
Q 018756           88 LSEDCCR-YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQ  158 (351)
Q Consensus        88 l~e~~~k-yg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~  158 (351)
                      ||++|.. ||..++   .    +.++..+|+++.   ..+.+|...+.++|++||..++ +...++        .|+|||
T Consensus        92 l~~~~~~l~~~~~~---~----~~~~~~~~~~~~---~~~~d~~~~l~~~vi~Pl~~~~-~~~~~i~~~ikKR~~k~lDy  160 (251)
T 2fic_A           92 LNECLQEVYEPDWP---G----RDEANKIAENND---LLWMDYHQKLVDQALLTMDTYL-GQFPDIKSRIAKRGRKLVDY  160 (251)
T ss_dssp             HHHHHHHHCCTTST---T----HHHHHHHHHHHH---HHHHHHHHHHHHHTHHHHHHHH-HTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcC---C----chhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhH
Confidence            8888887 777765   2    234455666644   4556677778899999999999 455442        566665


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHH
Q 018756          159 RYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMV  237 (351)
Q Consensus       159 dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lv  237 (351)
                      |+-+  +           +..|.++.. +.  ..+|..|+++|++.+..+..++..+..-|+.+.+....+-...|.+|+
T Consensus       161 D~~~--~-----------~l~kl~~k~~kd--~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~  225 (251)
T 2fic_A          161 DSAR--H-----------HYESLQTAKKKD--EAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIA  225 (251)
T ss_dssp             HHHH--H-----------HHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--H-----------HHHHHHhcCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444  2           223333222 22  368888999999999999999999999999876633333346899999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhh
Q 018756          238 EGEKNYHLRIAAILGDVEAEMV  259 (351)
Q Consensus       238 eae~~yh~~~~~IL~~L~~~l~  259 (351)
                      .++..||.++.+++.+|...|.
T Consensus       226 ~~Q~~f~~~~~~~~~~L~~~l~  247 (251)
T 2fic_A          226 GLEENFHKEMSKLNQNLNDVLV  247 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.43  E-value=2.1e-13  Score=107.41  Aligned_cols=61  Identities=25%  Similarity=0.401  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|||.+..+++|+|.+||+|.|+...++|||.|+.  +|+.||||++||+.+.+++.
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   68 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQG   68 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC-
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCccc
Confidence            35689999999999999999999999999998999999998  89999999999999877643

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.43  E-value=1.6e-13  Score=104.91  Aligned_cols=56  Identities=23%  Similarity=0.414  Sum_probs=50.0

Q ss_pred             ceEEEEecCCCCCCCC-CccccCCCEEEEeeeCC-----CCeeEEEE-CCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSP-----SGWSEGEC-KGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~-ELsf~~GD~I~Vl~~~d-----~gWweG~~-~Gk~G~FPsnYVe~i  338 (351)
                      ...++|+|+|.|++++ ||+|++||+|.|++..+     +|||.|+. +|+.||||+|||+.+
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            3468999999999999 99999999999998875     49999999 899999999999864

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.43  E-value=1.8e-13  Score=106.59  Aligned_cols=58  Identities=28%  Similarity=0.491  Sum_probs=52.4

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ..|+|+|+|.+..++||+|.+||+|.|++..++|||.|+.  +|+.||||++||+.+.++
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            3589999999999999999999999999998999999998  999999999999998654

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.43  E-value=1.5e-13  Score=100.66  Aligned_cols=55  Identities=25%  Similarity=0.479  Sum_probs=49.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCC-CCeeEEEEC-CeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECK-GKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d-~gWweG~~~-Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||.+..++||+|++||+|.|++..+ +|||.|+++ |+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            45899999999999999999999999998754 599999987 99999999999864

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.42  E-value=6e-13  Score=104.40  Aligned_cols=58  Identities=26%  Similarity=0.446  Sum_probs=53.2

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+..++||+|.+||+|.|++.. +|||.|++  +|+.||||++||+.+..+
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   84 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSL   84 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGGC
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEcccC
Confidence            35799999999999999999999999999887 59999999  999999999999987543

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=108.07  Aligned_cols=58  Identities=24%  Similarity=0.416  Sum_probs=52.8

Q ss_pred             cceEEEEecCC-CCCCCCCccccCCCEEEEeeeCCCCeeEEEEC------CeeeEecCCceeecc
Q 018756          282 VYFLAEAIHPF-TAASEKELSLGVGDYVVVRKVSPSGWSEGECK------GKAGWFPSANVEKRQ  339 (351)
Q Consensus       282 ~~~~~~ALydf-~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~------Gk~G~FPsnYVe~i~  339 (351)
                      ....|+|+||| .+..++||+|++||+|.|+...++|||.|++.      |+.||||+|||+.+.
T Consensus        17 ~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           17 GSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            34679999999 79999999999999999999999999999984      799999999998764

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.42  E-value=1.8e-11  Score=124.41  Aligned_cols=55  Identities=25%  Similarity=0.495  Sum_probs=0.0

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEEC-CeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECK-GKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~-Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|.+||+|.|+... ++|||.|.+. |+.||||+|||+.+
T Consensus       429 ~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             eEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            3589999999999999999999999999876 4599999997 99999999999875

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.42  E-value=2.8e-13  Score=102.87  Aligned_cols=56  Identities=23%  Similarity=0.351  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE---CCee---eEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKA---GWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~---G~FPsnYVe~i~  339 (351)
                      ...|+|+|||.+..++||+|.+||+|.| ...++|||.|+.   +|+.   ||||++||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            3569999999999999999999999999 888999999998   7999   999999998764

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.41  E-value=2.3e-13  Score=104.40  Aligned_cols=57  Identities=30%  Similarity=0.465  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ...|+|+|||.+..++||+|++||+|.|++.. ++|||.|+++|+.||||++||+.+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            35699999999999999999999999999877 6799999999999999999999764

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=5.4e-13  Score=107.59  Aligned_cols=59  Identities=22%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             ceEEEEecCCCCC--------CCCCccccCCCEEEEeee-CCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAA--------SEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~--------~~~ELsf~~GD~I~Vl~~-~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+.        .++||+|++||+|.|+.. .++|||.|+++|+.||||++||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            4568999999998        789999999999999965 5678999999999999999999998643

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.41  E-value=8.8e-14  Score=104.37  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~  339 (351)
                      ...|+|+|+|.+..+++|+|.+||+|.|+...++|||.|+ ++|+.||||++||+.+.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            3569999999999999999999999999998889999998 69999999999998754

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=9e-13  Score=102.94  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=53.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCC-CeeEEEE--CCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGEC--KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~-gWweG~~--~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+..++||+|++||+|.|+...++ |||.|+.  +|+.||||+|||+....++
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   79 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGPS   79 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCCSC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccccc
Confidence            469999999999999999999999999987766 9999986  7999999999999876554

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.41  E-value=1.7e-13  Score=100.64  Aligned_cols=55  Identities=20%  Similarity=0.315  Sum_probs=51.0

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~  340 (351)
                      .|+|+|||.+..++||+|.+||+|.|+.. ++|||.|. .+|+.||||++||+.+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            58999999999999999999999999988 89999998 489999999999998753

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.41  E-value=2.3e-13  Score=112.62  Aligned_cols=61  Identities=25%  Similarity=0.380  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee-CCCC--eeEEEEC--------CeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSG--WSEGECK--------GKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~-~d~g--WweG~~~--------Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|||.+.+++||+|++||+|.|+.+ .+.|  ||.|+++        |+.||||+|||+.+..+..
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~~~   93 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKP   93 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSC
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccccCc
Confidence            4569999999999999999999999999987 3444  9999987        9999999999998876543

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=108.33  Aligned_cols=55  Identities=35%  Similarity=0.522  Sum_probs=51.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC-----CCCeeEEEE-CCeeeEecCCceee
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGEC-KGKAGWFPSANVEK  337 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-----d~gWweG~~-~Gk~G~FPsnYVe~  337 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..     ++|||.|+. +|+.||||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            45799999999999999999999999999884     889999999 99999999999973

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=3.9e-13  Score=108.44  Aligned_cols=61  Identities=28%  Similarity=0.415  Sum_probs=55.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...++|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...++
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   94 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSG   94 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCSS
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCCC
Confidence            4568999999999999999999999999999889999999999999999999998865443

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=103.20  Aligned_cols=58  Identities=17%  Similarity=0.283  Sum_probs=53.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+ ++|+.||||++||+.+..
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccC
Confidence            3569999999999999999999999999999889999997 589999999999998743

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.39  E-value=7.1e-13  Score=100.01  Aligned_cols=57  Identities=21%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|.+||+|.|++.. ++||.|+. +|+.||||++||+.+..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            35699999999999999999999999999885 89999975 79999999999998754

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.38  E-value=2.2e-13  Score=112.87  Aligned_cols=59  Identities=20%  Similarity=0.249  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCee---eEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA---GWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~---G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+..++||+|++||+|.|+...++|||.|+++|+.   ||||+|||+.+.+.
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~   66 (108)
T 2rqv_A            5 SLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA   66 (108)
T ss_dssp             CCCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCSS
T ss_pred             CeEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecCC
Confidence            346999999999999999999999999998889999999997776   99999999987653

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=6.1e-13  Score=100.28  Aligned_cols=56  Identities=21%  Similarity=0.304  Sum_probs=51.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~  340 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++.. ++||.|+. +|+.||||++||+.+.+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            4689999999999999999999999999874 89999995 99999999999998754

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.38  E-value=6.9e-14  Score=106.25  Aligned_cols=60  Identities=27%  Similarity=0.437  Sum_probs=54.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeee-EecCCceeeccCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEKRQRIPV  343 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G-~FPsnYVe~i~~~p~  343 (351)
                      ..|+|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.| |||++||+.+...++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~~~   67 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG   67 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCCCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCccc
Confidence            458999999999999999999999999998899999999998886 999999998765443

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.37  E-value=8.8e-13  Score=105.36  Aligned_cols=63  Identities=24%  Similarity=0.354  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCC----CCeeEEEECCe-eeEecCCceeeccCCCCCc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGK-AGWFPSANVEKRQRIPVSN  345 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d----~gWweG~~~Gk-~G~FPsnYVe~i~~~p~sk  345 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+...+    +|||.|+++|+ .||||.+||+.+...+..+
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~~~   84 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGRK   84 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCCST
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCccccC
Confidence            457999999999999999999999999998876    69999998887 9999999999987655443

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=101.25  Aligned_cols=55  Identities=13%  Similarity=0.286  Sum_probs=50.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~  339 (351)
                      ..|+|+|||.+..++||+|++||+|.|++ .+.+||.|+.  +|+.||||+|||+.+.
T Consensus        18 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~   74 (79)
T 2cud_A           18 DFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVS   74 (79)
T ss_dssp             CEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             eEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEcc
Confidence            46999999999999999999999999998 4689999997  5999999999999864

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.37  E-value=2.5e-12  Score=105.09  Aligned_cols=60  Identities=23%  Similarity=0.390  Sum_probs=54.9

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+.  +|+.||||++||+.+.++
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   87 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI   87 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSSC
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCcc
Confidence            346799999999999999999999999999988999999996  899999999999988654

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=98.83  Aligned_cols=57  Identities=23%  Similarity=0.391  Sum_probs=51.6

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCC-CCeeEEEEC-CeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECK-GKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d-~gWweG~~~-Gk~G~FPsnYVe~i~~  340 (351)
                      ..|+|+|||.+..++||+|++||+|.|++..+ +|||.|+.. |+.||||++||+.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            46999999999999999999999999998764 679999986 9999999999998754

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.37  E-value=1.3e-13  Score=106.48  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceee
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEK  337 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~  337 (351)
                      ...|+|+|||.+.+++||+|.+||+|.|++..++|||.|+. +|+.||||+|||+.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            34689999999999999999999999999988899999995 99999999999975

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.37  E-value=4.2e-13  Score=107.04  Aligned_cols=61  Identities=30%  Similarity=0.439  Sum_probs=52.1

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeee---------------CCCCeeEEEE--CCeeeEecCCceeeccCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKV---------------SPSGWSEGEC--KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~---------------~d~gWweG~~--~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ....|+|+|+|.+..++||+|.+||+|.|++.               .+.|||.|..  +|+.||||+|||+.+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~~~   87 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPVA   87 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEEEC
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecccc
Confidence            34679999999999999999999999999842               2238999987  6999999999999886643

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.36  E-value=7.3e-13  Score=100.92  Aligned_cols=57  Identities=32%  Similarity=0.521  Sum_probs=51.8

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnYVe~i~~~  341 (351)
                      ..|+|+|||.+..+++|+|.+||+|.|++.. +|||.|++   +|+.||||++||+.+...
T Consensus        12 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~~   71 (74)
T 2m0y_A           12 KYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEAI   71 (74)
T ss_dssp             SCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCCC
T ss_pred             eEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEeccc
Confidence            4689999999999999999999999999885 89999998   799999999999987543

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.36  E-value=5.2e-13  Score=101.06  Aligned_cols=58  Identities=22%  Similarity=0.453  Sum_probs=50.8

Q ss_pred             ceEEEEecCCCCCCCC--CccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEK--ELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~--ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++  +|+|++||+|.|+.. ++|||.|+ .+|+.||||++||+.+...
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCC
Confidence            3568999999998655  999999999999876 78999997 5999999999999987653

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.36  E-value=1.4e-12  Score=102.88  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=49.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~  337 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++. ++|||.|+ .+|+.||||++||+.
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            569999999999999999999999999987 67999999 589999999999974

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=99.36  E-value=2.3e-11  Score=111.66  Aligned_cols=213  Identities=17%  Similarity=0.287  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhh-hchhhhhHH---HHHHhHHHhhcCcchhh
Q 018756            8 ASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRST-RGTKDFQRD---LVKVAEVFTAIGYKHIE   83 (351)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~---~vr~~~~~~~~~~~q~E   83 (351)
                      ++-+..++.|-.|.|...+|++     +.. .|+. +.   .+++-|..+ +..+.++++   |+.+++++..+     .
T Consensus        10 ~~~~~k~~~R~~q~~~~k~G~~-----e~t-~D~~-fe---~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~-----~   74 (244)
T 1uru_A           10 AKSVQKHAGRAKEKILQNLGKV-----DRT-ADEI-FD---DHLNNFNRQQASANRLQKEFNNYIRCVRAAQAA-----S   74 (244)
T ss_dssp             ----------------CCSSCT-----TCC-HHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-----ccc-CCHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence            3445567777888898888733     222 2553 22   233333222 345566766   56666665543     2


Q ss_pred             hhhhhhHHHhh-hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hh
Q 018756           84 AGTKLSEDCCR-YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------AR  154 (351)
Q Consensus        84 ~~~~l~e~~~k-yg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R  154 (351)
                        ..||++|.. ||.+++    +.   .++   +.....++.++.+|...+.++|++||+.++. ...++        .+
T Consensus        75 --~~l~~~~~~l~~~~~~----~~---~~~---~~~~~~~~~~~~~~~~~~~~~vi~Pl~~~~~-~~~~i~~~ikKR~~k  141 (244)
T 1uru_A           75 --KTLMDSVCEIYEPQWS----GY---DAL---QAQTGASESLWADFAHKLGDQVLIPLNTYTG-QFPEMKKKVEKRNRK  141 (244)
T ss_dssp             --HHHHHHHHHHSCTTST----TH---HHH---HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCC----Cc---hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence              368899888 666654    21   233   3334458889999999999999999999984 44332        44


Q ss_pred             hhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHH
Q 018756          155 HLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLV  234 (351)
Q Consensus       155 ~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~  234 (351)
                      +||  ||+.|+.++....    +..|.++    +  .+|.+|+++|++.+..+..++..+..-|+.+.+....+-...|.
T Consensus       142 ~lD--yD~~~~~l~kl~~----k~~k~kd----~--~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~  209 (244)
T 1uru_A          142 LID--YDGQRHSFQNLQA----NANKRKD----D--VKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQ  209 (244)
T ss_dssp             HHH--HHHHHHHHHHHHT----TTCBTTB----C--CTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhh--HHHHHHHHHHHHh----ccccCcc----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            444  4443343332221    0001111    2  57777888888888888888888888888876643333356899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          235 AMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       235 ~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      +|+.++..||.++..+...|..-+..
T Consensus       210 ~fv~~q~~~~~~~~~~~~~l~~~~~~  235 (244)
T 1uru_A          210 TLFATEQVFHNETAKIYSELEAIVDK  235 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888776543

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.35  E-value=1.1e-12  Score=103.89  Aligned_cols=57  Identities=25%  Similarity=0.398  Sum_probs=51.8

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ..|+|+|||.+..+++|+|.+||+|.|+.. ++|||.|+.  +|+.||||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            468999999999999999999999999987 578999998  899999999999987654

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-12  Score=102.96  Aligned_cols=58  Identities=26%  Similarity=0.538  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee--CC--CCeeEEE--ECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SP--SGWSEGE--CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~--~d--~gWweG~--~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+..  .+  +|||.|+  ++|+.||||+|||+.+..
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            4579999999999999999999999999987  34  8999999  799999999999998753

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.35  E-value=1.5e-12  Score=112.53  Aligned_cols=58  Identities=38%  Similarity=0.614  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|.+||+|.|+... ++|||.|+++|+.||||++||+.+.+
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            45799999999999999999999999999884 88999999999999999999998754

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.34  E-value=2.8e-13  Score=105.96  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=51.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee---------------CCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---------------SPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~---------------~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|+..               .++|||.|..  +|+.||||++||+.+.+.
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~~   80 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   80 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCcc
Confidence            3579999999999999999999999999954               2449999965  699999999999987653

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.34  E-value=5e-12  Score=122.97  Aligned_cols=63  Identities=30%  Similarity=0.460  Sum_probs=57.9

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ....|+|+|||.+..++||+|++||+|.|+...++|||.|+++|+.||||+|||+.+.+.|..
T Consensus       173 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~  235 (341)
T 2dyb_A          173 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEE  235 (341)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCCT
T ss_pred             CCcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCcc
Confidence            346799999999999999999999999999999999999999999999999999998776644

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.33  E-value=1.3e-12  Score=109.21  Aligned_cols=58  Identities=34%  Similarity=0.495  Sum_probs=52.3

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEee-----eCCCCeeEEEE----------CCeeeEecCCceeecc
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK-----VSPSGWSEGEC----------KGKAGWFPSANVEKRQ  339 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~-----~~d~gWweG~~----------~Gk~G~FPsnYVe~i~  339 (351)
                      ....|+|+|+|.+..++||+|++||+|.|+.     ..++|||.|..          +|+.||||++||+.++
T Consensus        43 ~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l~  115 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ  115 (115)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             cceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEECc
Confidence            4567999999999999999999999999999     78899999976          3889999999999763

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.32  E-value=1.7e-12  Score=109.01  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.+..++||+|++||+|.|+...++|||.|+.   +|+.||||+|||+.+.+.
T Consensus         3 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            3 PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             CCEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             CEEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            35689999999999999999999999999999999999985   688899999999988654

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.28  E-value=8.1e-12  Score=104.75  Aligned_cols=56  Identities=27%  Similarity=0.420  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnYVe~i~  339 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|++.. +|||.|++   +|+.||||+|||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            34699999999999999999999999999885 69999999   8999999999998764

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.27  E-value=8.9e-12  Score=96.17  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=45.4

Q ss_pred             EEEecCCCCC---CCCCccccCCCEEEEeeeC-CCCeeEEE--ECCeeeEecCCceeecc
Q 018756          286 AEAIHPFTAA---SEKELSLGVGDYVVVRKVS-PSGWSEGE--CKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       286 ~~ALydf~a~---~~~ELsf~~GD~I~Vl~~~-d~gWweG~--~~Gk~G~FPsnYVe~i~  339 (351)
                      +.++|+|.+.   .++||+|++||+|.|++.. ++|||.|+  .+|+.||||+|||+.+.
T Consensus        18 ~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           18 FQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             CSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            4556666664   3589999999999999984 89999999  58999999999998753

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.26  E-value=7e-12  Score=117.14  Aligned_cols=59  Identities=25%  Similarity=0.463  Sum_probs=54.9

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+...+
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   61 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMD   61 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGSC
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCccc
Confidence            46899999999999999999999999999999999999999999999999999876543

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.26  E-value=7.2e-12  Score=94.50  Aligned_cols=49  Identities=33%  Similarity=0.559  Sum_probs=40.9

Q ss_pred             CCCCCCCCCccccCCCEEEEeee-CCCCeeEEE--ECCeeeEecCCceeecc
Q 018756          291 PFTAASEKELSLGVGDYVVVRKV-SPSGWSEGE--CKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       291 df~a~~~~ELsf~~GD~I~Vl~~-~d~gWweG~--~~Gk~G~FPsnYVe~i~  339 (351)
                      +|.+.+++||+|++||+|.|++. .++|||.|+  ++|+.||||+|||+.+.
T Consensus        18 ~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           18 PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             CCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            33344455999999999999998 688999995  58999999999998753

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=5.7e-12  Score=115.94  Aligned_cols=57  Identities=33%  Similarity=0.488  Sum_probs=52.1

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEee-----eCCCCeeEEEE----------CCeeeEecCCceeec
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK-----VSPSGWSEGEC----------KGKAGWFPSANVEKR  338 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~-----~~d~gWweG~~----------~Gk~G~FPsnYVe~i  338 (351)
                      ....|+|+|+|.+...+||+|.+||+|.|+.     ..++|||.|+.          +|+.||||.|||+.+
T Consensus       141 ~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CCEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             cceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            3457999999999999999999999999999     78899999996          499999999999876

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.23  E-value=9.7e-12  Score=112.48  Aligned_cols=59  Identities=29%  Similarity=0.560  Sum_probs=54.7

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECCC
Confidence            34579999999999999999999999999999999999999999999999999998753

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.20  E-value=1.8e-11  Score=107.93  Aligned_cols=55  Identities=20%  Similarity=0.363  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceee
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK  337 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~  337 (351)
                      ...++|+|||.+..++||+|.+||+|.|++..++|||.|+ .+|+.||||+|||+.
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            4579999999999999999999999999999999999999 599999999999974

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.20  E-value=1.2e-11  Score=111.11  Aligned_cols=60  Identities=32%  Similarity=0.475  Sum_probs=55.5

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+...
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   69 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP   69 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCS
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccc
Confidence            456799999999999999999999999999998999999999999999999999987654

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.18  E-value=2.8e-11  Score=108.76  Aligned_cols=58  Identities=29%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+..
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            3568999999999999999999999999999899999999999999999999998754

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.17  E-value=2.3e-11  Score=116.56  Aligned_cols=58  Identities=38%  Similarity=0.553  Sum_probs=53.7

Q ss_pred             eEEEEecCCC--CCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFT--AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~--a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ..|+|+|||.  +.+++||+|.+||+|.|++..++|||.|+++|+.||||+|||+.+...
T Consensus       238 ~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ  297 (304)
T ss_dssp             CCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSC
T ss_pred             EEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCC
Confidence            4689999999  669999999999999999999999999999999999999999988654

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.16  E-value=3.6e-11  Score=107.76  Aligned_cols=58  Identities=26%  Similarity=0.379  Sum_probs=51.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+..+++|+|.+||+|.|++..+ |||.|.+   +|+.||||+|||+.+...
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~~   77 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEVT   77 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC-
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEeccc
Confidence            357999999999999999999999999998866 6999998   789999999999987653

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.15  E-value=1.1e-11  Score=114.40  Aligned_cols=61  Identities=26%  Similarity=0.446  Sum_probs=55.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+ .+|+.||||+|||+.+.+.+.
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~  197 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA  197 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSCC
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCCc
Confidence            4568999999999999999999999999999999999999 799999999999999876543

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.15  E-value=4.5e-11  Score=119.88  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=55.2

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccC
Confidence            35679999999999999999999999999999999999999999999999999998754

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.12  E-value=8.1e-11  Score=103.76  Aligned_cols=56  Identities=20%  Similarity=0.442  Sum_probs=51.8

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~  340 (351)
                      ..|+|+|||.+..++||+|.+||+|.|++. +.+||.|+.  +|+.||||+|||+.+..
T Consensus        13 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~   70 (175)
T 4d8k_A           13 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS   70 (175)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             cEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc
Confidence            579999999999999999999999999988 679999998  89999999999997643

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=99.11  E-value=1.7e-08  Score=94.29  Aligned_cols=203  Identities=8%  Similarity=0.072  Sum_probs=151.1

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHHHHHH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHVEKEQ  126 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~-~~~~~~~~~~~a~~~~g~a~~~~~~~~  126 (351)
                      ..|.-+=..+-.-+..=+.+++.+..++.+|.-.....+.+++.+..|+... +.++++..++.++..||++++.|...+
T Consensus        21 ~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~  100 (265)
T 2q12_A           21 SLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCH  100 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445556677888888888888888888889999999999852 213467789999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHH
Q 018756          127 EDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKAN  206 (351)
Q Consensus       127 ~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~  206 (351)
                      ..|..++...|++||+.++.+|+++. +.+...|++.+.++++-...+.. +.|.+.   +|  ..+..|+..|...+..
T Consensus       101 ~~l~~~~~~~~~~PL~~f~~~dlk~~-ke~kk~fdk~~~~yd~al~k~~~-~~k~k~---~e--~~l~Ea~~~l~~~Rk~  173 (265)
T 2q12_A          101 AVLSTQLADAMMFPITQFKERDLKEI-LTLKEVFQIASNDHDAAINRYSR-LSKKRE---ND--KVKYEVTEDVYTSRKK  173 (265)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHTSCC---CH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCCc---ch--hhHHHHHHHHHHHHHH
Confidence            99999999999999999999998764 56666888888888766666422 222221   22  4567799999999998


Q ss_pred             HHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 018756          207 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG-DVEAE  257 (351)
Q Consensus       207 m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~-~L~~~  257 (351)
                      +....-+....|+.+.....---+..|..+++++.+|++++.+++. ++.+-
T Consensus       174 f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~  225 (265)
T 2q12_A          174 QHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEF  225 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777777787776533222378899999999999999988873 55553

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.11  E-value=1.3e-10  Score=86.31  Aligned_cols=46  Identities=22%  Similarity=0.434  Sum_probs=42.8

Q ss_pred             CCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          296 SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       296 ~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      +++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+.+.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            5789999999999999998999999999999999999999998664

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.10  E-value=7.6e-11  Score=119.95  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||++..++||+|.+||+|.|++..++|||.|+.  +|+.||||+|||+...++
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l  145 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI  145 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccccc
Confidence            34699999999999999999999999999999999999998  899999999999986543

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=99.08  E-value=1.5e-08  Score=94.15  Aligned_cols=212  Identities=13%  Similarity=0.185  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhh
Q 018756           10 KLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGT   86 (351)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~   86 (351)
                      -+...+.|-.|-|.-.+|.+ -...|..+ |+ +-++.+.||+      +.+++||+   +..++.++...+   .    
T Consensus         8 ~~~K~~~R~~q~lkqk~G~~-e~T~D~~F-e~-~e~rF~~le~------~~~kL~k~~k~y~~ai~~~~~~q---~----   71 (237)
T 4avm_A            8 QVQKKFSRAQEKVLQKLGKA-VETKDERF-EQ-SASNFYQQQA------EGHKLYKDLKNFLSAVKVMHESS---K----   71 (237)
T ss_dssp             HHHHHHHHHHHHHHHHTTSS-CCCCCHHH-HH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---H----
T ss_pred             HHHHHHhhhhHHHHHHcCCC-cccccHHH-HH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---H----
Confidence            34456777888888888843 22333333 21 1223334443      46789998   455555555443   2    


Q ss_pred             hhhHHHh-hhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhh
Q 018756           87 KLSEDCC-RYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQR  159 (351)
Q Consensus        87 ~l~e~~~-kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~d  159 (351)
                      .+++++. =|+..|+    +.      -.+......++..+.++...|.+.|+.||..+..-.|      .++.++|. |
T Consensus        72 ~~~~~l~~~y~~~~~----~~------~~~~~~~~~~~~l~~~~~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kll-D  140 (237)
T 4avm_A           72 RVSETLQEIYSSEWD----GH------EELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLV-D  140 (237)
T ss_dssp             HHHHHHHHHSCTTST----TH------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHhCCccC----cH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-H
Confidence            3344443 2776665    21      1344555566778999999999999999999987654      24577777 9


Q ss_pred             hHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 018756          160 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEG  239 (351)
Q Consensus       160 y~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lvea  239 (351)
                      ||+.|+.++.....      +.+     | ..||..||+.++..+..+..++..+...|+.+.+-...+-..-|.+|+..
T Consensus       141 yd~~~~~~~kl~~k------~~k-----d-~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~  208 (237)
T 4avm_A          141 YDSARHHLEAVQNA------KKK-----D-EAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNL  208 (237)
T ss_dssp             HHHHHHHHHHHHTC------SSC-----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc------cCC-----c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988887765331      112     2 47999999999999999999999999999987763333334678899999


Q ss_pred             HHHHHHHHHHHHHHhHHHhhh
Q 018756          240 EKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       240 e~~yh~~~~~IL~~L~~~l~s  260 (351)
                      +..||.....+...|.+-|..
T Consensus       209 q~~f~~~~~~~~~~l~~~~~~  229 (237)
T 4avm_A          209 RDVFYREMSKLNHNLYEVMSK  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            999999999888888776543

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.06  E-value=2.5e-10  Score=109.30  Aligned_cols=61  Identities=26%  Similarity=0.435  Sum_probs=55.5

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceeeccCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ....|+|+|+|.+..++||+|++||+|.|+...++|||.|+ .+|+.||||++||+.+...+
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~  194 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS  194 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCST
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCC
Confidence            34579999999999999999999999999999999999999 69999999999999886543

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.03  E-value=1.3e-10  Score=89.70  Aligned_cols=48  Identities=23%  Similarity=0.428  Sum_probs=44.3

Q ss_pred             CCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       294 a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      +.+++||+|++||+|.|+...++|||.|+++|+.||||++||+.+.+.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCC
Confidence            467899999999999999998999999999999999999999988654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.02  E-value=3.7e-10  Score=112.12  Aligned_cols=59  Identities=25%  Similarity=0.456  Sum_probs=53.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeee-CCCCeeEEEEC-CeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECK-GKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~~-Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+..++||+|++||+|.|++. .++|||.|+.. |+.||||+|||++...+|
T Consensus        12 ~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~   72 (450)
T 1k9a_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK   72 (450)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             CEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccc
Confidence            469999999999999999999999999988 67899999986 999999999999876543

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.55  E-value=4e-11  Score=114.81  Aligned_cols=59  Identities=32%  Similarity=0.460  Sum_probs=53.1

Q ss_pred             ceEEEEecCCCCCC--CCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAAS--EKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~--~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||.++.  ++||+|.+||+|.|++..++|||.|+++|+.||||+|||+.+...
T Consensus       237 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (303)
T 2lqn_A          237 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ  297 (303)
Confidence            35699999998654  779999999999999999999999999999999999999988653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.99  E-value=3.5e-10  Score=112.29  Aligned_cols=58  Identities=21%  Similarity=0.389  Sum_probs=53.7

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ..|+|+|||.+..++||+|++||+|.|++..++|||.|+.  +|+.||||+|||+...++
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l   62 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccccc
Confidence            3589999999999999999999999999998999999998  899999999999986544

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=98.99  E-value=3.4e-10  Score=102.26  Aligned_cols=55  Identities=31%  Similarity=0.484  Sum_probs=47.0

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEECCeeeEecCCceeecc
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      .|+|+|||.+..++||+|++||+|.|+... ++|||.|+++|+.||||.+||+...
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccccccc
Confidence            489999999999999999999999999776 6799999999999999999998653

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.97  E-value=5.2e-10  Score=115.10  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...++|+|||.+++++||+|++||+|.|+...++|||.|+  ++|+.|+||+|||+.+...
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~  502 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIET  502 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCCE
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcccC
Confidence            3568999999999999999999999999999999999999  6899999999999986543

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.97  E-value=5.1e-10  Score=107.17  Aligned_cols=56  Identities=20%  Similarity=0.351  Sum_probs=52.1

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i  338 (351)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+. +|+.||||++||+.+
T Consensus       147 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  203 (308)
T 3qwy_A          147 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ  203 (308)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             ceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccc
Confidence            35799999999999999999999999999999999999996 999999999999943

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.96  E-value=6.2e-11  Score=113.58  Aligned_cols=58  Identities=17%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             ceEEEEecCCCC--CCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTA--ASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a--~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+  .+++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+
T Consensus       247 ~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          247 PAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            346899999955  4569999999999999999889999999999999999999998754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.89  E-value=1.6e-09  Score=108.99  Aligned_cols=59  Identities=25%  Similarity=0.434  Sum_probs=53.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|||++..++||+|++||+|.|++.. +.+||.|+.+|+.||||+|||+.+.++
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~l  102 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSL  102 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSG
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccc
Confidence            34699999999999999999999999999876 789999999999999999999986543

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.40  E-value=1.8e-10  Score=110.21  Aligned_cols=61  Identities=20%  Similarity=0.358  Sum_probs=55.2

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCCC
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|.. +|+.||||++||+.+.+.+
T Consensus       124 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~  185 (303)
T 2lqn_A          124 NLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSS  185 (303)
Confidence            345799999999999999999999999999998999999994 8999999999999886543

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=98.87  E-value=4e-07  Score=89.25  Aligned_cols=185  Identities=8%  Similarity=0.067  Sum_probs=130.4

Q ss_pred             hhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018756           60 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVL  138 (351)
Q Consensus        60 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~-~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~  138 (351)
                      -+.+=+.+++.++.++.+|.-.......+++.+..|+.+. |.+.++..++.++..||++++.|+..+..|..++...|+
T Consensus        33 l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~~~~~~  112 (385)
T 2q13_A           33 ISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMM  112 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455667777777766655555567888899999852 212356678899999999999999999999999999999


Q ss_pred             hHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018756          139 DPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAAL  218 (351)
Q Consensus       139 ~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am  218 (351)
                      +||+.++.+|+++. +.+-..|++.+.++++-...... +.|.+   .++  ..+..|+..|...+..+....-+....|
T Consensus       113 ~PL~~f~~~di~~~-ke~kk~fek~~~~yd~al~k~~~-~~k~k---~~e--~~~~ea~~~l~~~rk~f~~~~ldy~~~l  185 (385)
T 2q13_A          113 FPITQFKERDLKEI-LTLKEVFQIASNDHDAAINRYSR-LSKKR---END--KVKYEVTEDVYTSRKKQHQTMMHYFCAL  185 (385)
T ss_dssp             HHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-CCSSS---CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCC---chh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998765 45555777777777655555321 11211   122  3456677888888887666655666667


Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 018756          219 AAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL  251 (351)
Q Consensus       219 ~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL  251 (351)
                      ..++.....--+..|..+++++..|+.++.+++
T Consensus       186 ~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~  218 (385)
T 2q13_A          186 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  218 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766653332336789999999999988877764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.87  E-value=1.9e-09  Score=106.88  Aligned_cols=57  Identities=25%  Similarity=0.435  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|||.+..++||+|++||+|.|++. ++|||.|+  .+|+.||||+|||..+.+
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc
Confidence            3469999999999999999999999999988 58899999  689999999999997643

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.84  E-value=4.1e-09  Score=83.11  Aligned_cols=53  Identities=28%  Similarity=0.436  Sum_probs=47.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEE----CCeeeEecCCce
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGEC----KGKAGWFPSANV  335 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~----~Gk~G~FPsnYV  335 (351)
                      ...+.|+|||.+....||+|++||.+.|++..  +++||.++.    .++.||||+|||
T Consensus        17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            45689999999999999999999999999876  479999996    247899999999

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.73  E-value=1.7e-08  Score=74.33  Aligned_cols=42  Identities=19%  Similarity=0.314  Sum_probs=38.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK  324 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~  324 (351)
                      ...|+|+|||.+..++||+|++||+|.|++..+++||.|+++
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            357999999999999999999999999999999999999864

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.72  E-value=2.5e-09  Score=102.36  Aligned_cols=55  Identities=22%  Similarity=0.396  Sum_probs=48.9

Q ss_pred             eEEEEecCCCCCCCC-----CccccCCCEEEEeeeCCCCeeEEEECC------eeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEK-----ELSLGVGDYVVVRKVSPSGWSEGECKG------KAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~-----ELsf~~GD~I~Vl~~~d~gWweG~~~G------k~G~FPsnYVe~i  338 (351)
                      ..++|+|||++..++     +|+|++||+|.|++..++|||.|+..|      +.||||+||+.+.
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            468999999998877     999999999999999999999999743      7899999999653

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.67  E-value=1e-08  Score=107.92  Aligned_cols=59  Identities=22%  Similarity=0.324  Sum_probs=50.5

Q ss_pred             eEEEEecCCC---CCCCCCccccCCCEEEEeee-----CCCCeeEEE--ECCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFT---AASEKELSLGVGDYVVVRKV-----SPSGWSEGE--CKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~---a~~~~ELsf~~GD~I~Vl~~-----~d~gWweG~--~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      .+++|+|||.   +.++++|+|++||+|.+...     .++|||.|+  ++|+.|+||.+||..+++++
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~  642 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVT  642 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSS
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCC
Confidence            4689999998   78899999999999999887     478999999  68999999999999988753

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.55  E-value=3.5e-06  Score=80.04  Aligned_cols=57  Identities=12%  Similarity=0.046  Sum_probs=47.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...+.|+|||.+.   ++++.+|+.+++++..++.||..+. +|..|++|++|+...+|-|
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p~~  255 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPPNQ  255 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSCCH
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCCCH
Confidence            3568999999774   7999999999999988889999995 7889999999998766654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.51  E-value=1.1e-07  Score=85.56  Aligned_cols=59  Identities=19%  Similarity=0.314  Sum_probs=50.8

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCC---eeEEEECCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG---WSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~g---WweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..+.++|+|.+..+.+|.|..|++|.|+.+.+.+   ||.+..+|+.||||.+||+.+...+
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~~  232 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIK  232 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC---
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcCC
Confidence            3478999999999999999999999999776655   9999999999999999999876543

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.46  E-value=1.3e-07  Score=77.23  Aligned_cols=57  Identities=11%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             ceEEEEecCC--CCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeecc
Q 018756          283 YFLAEAIHPF--TAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQ  339 (351)
Q Consensus       283 ~~~~~ALydf--~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~  339 (351)
                      ...++|+|+|  ...+..+|+|++|+.+.|+...+++||.++. .|+.|++|.+||+++.
T Consensus        39 l~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           39 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC--
T ss_pred             EEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccc
Confidence            3457888999  6677889999999999999999999999997 8999999999998654

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.40  E-value=2.5e-07  Score=90.24  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=46.5

Q ss_pred             ceEEEEecCCCCCCCC-------CccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCc
Q 018756          283 YFLAEAIHPFTAASEK-------ELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSAN  334 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~-------ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnY  334 (351)
                      ...++|+|||++..++       +|+|..||++.|++..+++||.|.+   +|..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            4679999999998765       4999999999999999999999998   57899999987

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.36  E-value=3.4e-07  Score=80.76  Aligned_cols=57  Identities=26%  Similarity=0.497  Sum_probs=52.4

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ....++++|+|.+..+.+|.|..||++.|....+.+||.+...|+.|+||.+|+...
T Consensus        13 ~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             CceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            455789999999999999999999999999999999999999999999999998653

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.36  E-value=1e-06  Score=70.52  Aligned_cols=60  Identities=23%  Similarity=0.123  Sum_probs=48.3

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCC----CeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPS----GWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~----gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      .+.+..+|.+..+-||++.+||+|.|+++.|+    +||....+|+.||||++|++++.+.+..
T Consensus        19 LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~~~   82 (92)
T 1ug1_A           19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRSH   82 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSSC
T ss_pred             eEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCCCc
Confidence            35666677777888999999999999987644    4555556999999999999999887643

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=98.15  E-value=0.00011  Score=74.27  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=49.5

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ...++|+|||..   .+.++.+||.+++++..++.||.... +|..|++|+.|+.+.+|-|
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipppd~  340 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNP  340 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCSCCH
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCCCCH
Confidence            456899999984   78899999999999999999999997 6899999999998765554

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.14  E-value=2e-06  Score=91.23  Aligned_cols=57  Identities=21%  Similarity=0.351  Sum_probs=49.6

Q ss_pred             cceEEEEecCCCCCCCCC-----ccccCCCEEEEeeeCCCCeeEEEEC------CeeeEecCCceeec
Q 018756          282 VYFLAEAIHPFTAASEKE-----LSLGVGDYVVVRKVSPSGWSEGECK------GKAGWFPSANVEKR  338 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~E-----Lsf~~GD~I~Vl~~~d~gWweG~~~------Gk~G~FPsnYVe~i  338 (351)
                      ...+++|+|||++..+++     |+|++||++.|++..+++||.++..      +..|+||++|+.+.
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            346789999999998888     9999999999999999999999963      35699999998653

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.14  E-value=1.6e-06  Score=70.14  Aligned_cols=54  Identities=24%  Similarity=0.388  Sum_probs=47.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCC--CCeeEEEE-CCeeeEecCCceee
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGEC-KGKAGWFPSANVEK  337 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d--~gWweG~~-~Gk~G~FPsnYVe~  337 (351)
                      ...++|+|+ ...+..+|+|.+|+.+.|+...+  +|||.++. .|+.|++|.+||+.
T Consensus        28 l~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           28 IHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             CEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            457899999 46688899999999999998765  68999996 89999999999986

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.13  E-value=1.9e-06  Score=85.34  Aligned_cols=55  Identities=20%  Similarity=0.205  Sum_probs=48.2

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee---CCCCeeEEEECC------eeeEecCCceee
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECKG------KAGWFPSANVEK  337 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~---~d~gWweG~~~G------k~G~FPsnYVe~  337 (351)
                      ..+++|+|||++..+.+|+|..||++.|++.   .+.+||.+.+.+      ..|+||++|+..
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            4678999999999999999999999999988   578999999632      479999999864

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.07  E-value=2.6e-06  Score=82.27  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=45.4

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCC---------eeEEEEC------CeeeEecCCceee
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG---------WSEGECK------GKAGWFPSANVEK  337 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~g---------WweG~~~------Gk~G~FPsnYVe~  337 (351)
                      +.++++|+|||++..+++|+|..||++.|+...++|         ||.+..-      +..|++|++|+..
T Consensus         3 dsfyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            3 DSFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             CCEEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             ccEEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            456789999999999999999999999999877665         9999862      2679999998754

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.97  E-value=6.3e-06  Score=83.70  Aligned_cols=55  Identities=18%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeee---CCCCeeEEEE---CC---eeeEecCCceee
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGEC---KG---KAGWFPSANVEK  337 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~---~d~gWweG~~---~G---k~G~FPsnYVe~  337 (351)
                      .++++++|+|.+..+.+|+|+.||++.|++.   .+.+||.+.+   ++   ..|+||++|+..
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            3568999999999999999999999999988   6789999996   33   589999999864

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=97.94  E-value=0.00081  Score=66.13  Aligned_cols=182  Identities=11%  Similarity=0.170  Sum_probs=109.4

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHH
Q 018756           48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQ  126 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~  126 (351)
                      ..|.+|+.+++..-+-++++..++              +.+++.+..+..+... ...+..+..++..|+.+.+.+...+
T Consensus        58 ~~l~kl~k~~~~~~~~~~~~~~a~--------------~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~  123 (407)
T 4h8s_A           58 DYTNQLLQAMQRVYGAQNEMCLAT--------------QQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLH  123 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555544444444444444              3455555555554321 1123346777889999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHH
Q 018756          127 EDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKAN  206 (351)
Q Consensus       127 ~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~  206 (351)
                      ..|...+...+++||+.++.+++.+. +-+-..|++...++++....... +.|.++   ++  .....+...+.+.+..
T Consensus       124 ~~L~~~~~~~i~~pL~~f~k~di~~~-ke~kK~Fek~~~~Yd~~l~Ky~~-~~k~k~---~~--~~~~e~~~~l~~~Rk~  196 (407)
T 4h8s_A          124 TELAKQLADTMVLPIIQFREKDLTEV-STLKDLFGLASNEHDLSMAKYSR-LPKKKE---NE--KVKTEVGKEVAAARRK  196 (407)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-SCSTTC---CH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-ccccCC---ch--HHHHHHHHHHHHHHHH
Confidence            99999999999999999999887653 34444556655666555555422 122222   11  2223355556666555


Q ss_pred             HHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 018756          207 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAI  250 (351)
Q Consensus       207 m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~I  250 (351)
                      +....-+....|..+.......-+..|..+++++..|+.+..+.
T Consensus       197 f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~  240 (407)
T 4h8s_A          197 QHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEM  240 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555665554333333577888999998888766654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.74  E-value=2.2e-05  Score=75.07  Aligned_cols=52  Identities=19%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             ceEEEEecCCCCCCCC-----CccccCCCEEEEeeeCCCCeeEEEE------CCeeeEecCCc
Q 018756          283 YFLAEAIHPFTAASEK-----ELSLGVGDYVVVRKVSPSGWSEGEC------KGKAGWFPSAN  334 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~-----ELsf~~GD~I~Vl~~~d~gWweG~~------~Gk~G~FPsnY  334 (351)
                      .++++|+|||+|..++     .|+|+.||++.|.+..++|||.+..      .+..|++|+..
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChH
Confidence            3578999999998665     5999999999999999999999985      23479999853

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=97.72  E-value=0.0038  Score=58.52  Aligned_cols=178  Identities=10%  Similarity=0.127  Sum_probs=121.2

Q ss_pred             HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756           67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus        67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      |.+++.+.+.++.--+++..++||....  +- |   . -.+|.+|..+.+.++.++.-.+.+...+-..||.||..-+.
T Consensus        41 Y~~al~~~~~a~~~f~dal~kia~~A~~--s~-g---s-~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie  113 (253)
T 2ykt_A           41 YEKALAGVTYAAKGYFDALVKMGELASE--SQ-G---S-KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVE  113 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-S---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--Cc-c---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777777777777787778776553  11 2   2 46999999999999999999999999999999999999888


Q ss_pred             cChhhh---hhhhhhhhHhhhhHHHHHHHHHHHHHHhhh--cCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018756          147 GAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVR--EAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAA  220 (351)
Q Consensus       147 ~~~~e~---~R~L~~dy~rlrqe~E~~~~e~~rrq~k~r--e~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~  220 (351)
                      .+.+..   -++-..+|++.+.+++....++.+-+.|.+  .+. ..+  .++.++.+-+.+-+..|....+   .++-.
T Consensus       114 ~d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~--~~~~~~~e~v~~~~~~le~~~~---~~lr~  188 (253)
T 2ykt_A          114 LDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYS--DKELQYIDAISNKQGELENYVS---DGYKT  188 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCC--HHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            777754   356666888888888877777644333322  111 222  4556565555555554444433   33332


Q ss_pred             -HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756          221 -IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEA  256 (351)
Q Consensus       221 -ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~  256 (351)
                       +-.+-.|++  +..++.+++.+..||.++..+|..--.
T Consensus       189 aL~EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~~l~  227 (253)
T 2ykt_A          189 ALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLP  227 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence             223345555  588999999999999988777666443

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.69  E-value=6.3e-07  Score=86.96  Aligned_cols=55  Identities=15%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             EEecCCCC----CCCCCccc--cCCCEEEEeeeCCCCeeEEEECC---eeeEecCC-ceeeccCC
Q 018756          287 EAIHPFTA----ASEKELSL--GVGDYVVVRKVSPSGWSEGECKG---KAGWFPSA-NVEKRQRI  341 (351)
Q Consensus       287 ~ALydf~a----~~~~ELsf--~~GD~I~Vl~~~d~gWweG~~~G---k~G~FPsn-YVe~i~~~  341 (351)
                      .|+|+|.+    .++.+|+|  .+||+|.|+...++|||.|+++|   +.||||.+ ||+.+.+.
T Consensus       270 ~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~~~  334 (341)
T 2dyb_A          270 KDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDNY  334 (341)
T ss_dssp             HHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC--
T ss_pred             hhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecCCc
Confidence            46777776    45566666  89999999999999999999755   55699998 88776543

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=97.25  E-value=0.03  Score=52.43  Aligned_cols=172  Identities=15%  Similarity=0.206  Sum_probs=112.0

Q ss_pred             HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756           67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus        67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      |-+++.|.+.++.--.++..++||.-.  ++-.+    .-.+|.+|..+...++.|+.-.+.+...+-..||-||..-+.
T Consensus        43 y~~al~~~~~a~~af~Da~qKvad~A~--~s~g~----s~elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e  116 (253)
T 2d1l_A           43 LQSQLRTTVVAAAAFLDAFQKVADMAT--NTRGG----TREIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQME  116 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777777777777788777777554  12211    246999999999999999999999999999999999998888


Q ss_pred             cChhhh---hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC---CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018756          147 GAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREA---PNPENVAKLHAAEARMQELKANMAILGKEAAAALAA  220 (351)
Q Consensus       147 ~~~~e~---~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~---~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~  220 (351)
                      -+-+-.   -++-...|++.|.+......+..|-+.|.|..   ...+.-.-+..|-   ++..+....|..--..++-.
T Consensus       117 ~d~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~---q~v~~~~~~le~~~~~~~r~  193 (253)
T 2d1l_A          117 EWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSAL---QDVNDKYLLLEETEKQAVRK  193 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            555433   23334678899999988888887766555442   1122112333333   23333223333323333332


Q ss_pred             -HHHHhhhhh--HhHHHHHHHHHHHHHHHH
Q 018756          221 -IEAQQHRLT--FQRLVAMVEGEKNYHLRI  247 (351)
Q Consensus       221 -ve~qqq~lt--~~~L~~lveae~~yh~~~  247 (351)
                       +-.+-.|.+  +.+|+.+++.+..++...
T Consensus       194 AL~EERrRycflv~~l~pv~~~e~~~~~e~  223 (253)
T 2d1l_A          194 ALIEERGRFCTFISMLRPVIEEEISMLGEI  223 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGGGH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhH
Confidence             333445655  578888999999988644

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*

Probab=97.16  E-value=0.032  Score=51.40  Aligned_cols=173  Identities=13%  Similarity=0.200  Sum_probs=113.8

Q ss_pred             HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756           66 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  145 (351)
Q Consensus        66 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  145 (351)
                      .+++-++.++..=+--...=+.||+++.--|..-+      .++.+...+|++++.|++-...|...|+- |+.-|++++
T Consensus        25 ~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p------~l~~~f~~~~~~~r~~~k~g~~Ll~~L~~-f~s~l~T~~   97 (224)
T 1i4d_A           25 SVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP------ELQEEFGYNAETQKLLCKNGETLLGAVNF-FVSSINTLV   97 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH
Confidence            35555555555444444444589999999998744      48999999999999999999999988864 777788888


Q ss_pred             hcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhh--hcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018756          146 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRV--REAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAI  221 (351)
Q Consensus       146 ~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~--re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v  221 (351)
                      +++. +|.+.-...|..-|-|+-+-+.+++.=...-  .+..  ....-...+.|.+||+.+|.-       +.--|.-+
T Consensus        98 ~kaI-~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~~~~l~rve~~q~~~~~ak~kf~kLR~D-------V~~KleLL  169 (224)
T 1i4d_A           98 TKTM-EDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGD-------VAIKLKFL  169 (224)
T ss_dssp             HTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             hHhc-cHHHHHHHHHHHHhHhHHHHHhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            8765 5556666677777777766666553221110  0000  111124555566666666654       44445555


Q ss_pred             HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018756          222 EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       222 e~qqq~lt~~~L~~lveae~~yh~~~~~IL~~  253 (351)
                      ++..-++-..+|..|..+-..||..+.++|+.
T Consensus       170 d~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~  201 (224)
T 1i4d_A          170 EENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQ  201 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            55333333468999999999999999888865

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}

Probab=96.65  E-value=0.28  Score=45.10  Aligned_cols=170  Identities=12%  Similarity=0.146  Sum_probs=109.2

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  144 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  144 (351)
                      +.|.+++.|.+.++.--.+++.++||.-..= .  |    .-.+|.||+.+.+.++.|....+.+...+-..+|-||..=
T Consensus        37 ~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S-~--~----skeLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k  109 (222)
T 3ok8_A           37 NNYLRAFHALSEAAEVYFSAIQKIGEQALQS-S--T----SQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKN  109 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S--S----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888888888876441 1  2    1359999999999999999999999999999999999877


Q ss_pred             hhcChhh---hhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018756          145 ITGAPLE---DARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAA  220 (351)
Q Consensus       145 ~~~~~~e---~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~  220 (351)
                      +..|-+-   .-++....|+.....+|.-..++.|+..|   +. ++   .|   ..+-+....   ..|......+.-.
T Consensus       110 ~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~rk---sqk~~---~k---~~e~v~~~q---~el~~f~~~s~r~  177 (222)
T 3ok8_A          110 TKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERK---RDKNA---RE---MKESVNRLH---AQMQAFVSESKRA  177 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCTTH---HH---HHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh---hccCh---HH---HHHHHHHHH---hHHHHHHHHHHHH
Confidence            7655442   23344444555444445555555443322   22 23   33   122222222   2334434444433


Q ss_pred             -HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHH
Q 018756          221 -IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  253 (351)
Q Consensus       221 -ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~  253 (351)
                       +-++..|.+  +..-+++......||..+..+|.+
T Consensus       178 Al~EErRRYcFL~ekhc~~~~~~~~~h~k~~~~L~~  213 (222)
T 3ok8_A          178 AELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQN  213 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             222345555  467788888899999998888765

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=95.89  E-value=0.67  Score=44.96  Aligned_cols=148  Identities=10%  Similarity=0.095  Sum_probs=88.1

Q ss_pred             hhhHHHhhhhc--cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhh-hhhhhhhhH
Q 018756           87 KLSEDCCRYGA--ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLED-ARHLAQRYS  161 (351)
Q Consensus        87 ~l~e~~~kyg~--e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~-~R~L~~dy~  161 (351)
                      .||..+...|.  ++..+.+...|++|+..+|+.+..+++.-+.-...--..|.|||+.+..  ++.++. .||.. -..
T Consensus       208 ~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~-aL~  286 (366)
T 3dyt_A          208 KIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKG-AIE  286 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            45555555554  1211123346999999999999999988887777777789999987764  122221 11111 111


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hhH-hHHHHHHHH
Q 018756          162 RMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVAMVEG  239 (351)
Q Consensus       162 rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~-lt~-~~L~~lvea  239 (351)
                      |.+ +++.     ..+.+|      ++ ..++..|+.+++.....       +...|...+.  ++ ..+ ..|..+++.
T Consensus       287 k~~-e~~k-----l~~~~K------~~-~~~~~~~~~r~e~is~~-------~~~El~rF~~--~r~~Dfk~~l~~yl~~  344 (366)
T 3dyt_A          287 KVK-ESDK-----LVATSK------IT-LQDKQNMVKRVSIMSYA-------LQAEMNHFHS--NRIYDYNSVIRLYLEQ  344 (366)
T ss_dssp             HHH-THHH-----HHHTTS------SC-HHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHH-----HHhccC------cc-hhHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            110 0110     012222      23 25678888888888776       4444444433  22 123 468889999


Q ss_pred             HHHHHHHHHHHHHHhHHH
Q 018756          240 EKNYHLRIAAILGDVEAE  257 (351)
Q Consensus       240 e~~yh~~~~~IL~~L~~~  257 (351)
                      +..|++..++.++.+-..
T Consensus       345 qi~~~k~~~~~w~~~l~~  362 (366)
T 3dyt_A          345 QVQFYETIAEKLRQALSR  362 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999998888876543

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=95.71  E-value=0.32  Score=47.77  Aligned_cols=133  Identities=12%  Similarity=0.079  Sum_probs=84.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC
Q 018756          105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA  184 (351)
Q Consensus       105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~  184 (351)
                      ...|++|+..+|++...+++....-...--..|.|||+.+..  ++...+-+-.+.++..+..+    +.+|-+.+    
T Consensus       248 ~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~--ll~s~Kdll~~R~~aL~k~~----ea~kl~~~----  317 (386)
T 4akv_A          248 SEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQG--LLSNFPDIIHLQKGAFAKVK----ESQRMSDE----  317 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHT----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHh----
Confidence            346999999999999999988777777777889999998775  22223333333333222221    11111111    


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hhH-hHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018756          185 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVAMVEGEKNYHLRIAAILGDVEAE  257 (351)
Q Consensus       185 ~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~-lt~-~~L~~lveae~~yh~~~~~IL~~L~~~  257 (351)
                      .+++ ..++..++.+++.+...       +...|...+.  +| ..+ ..|..+++.+..||++.++.++.+-..
T Consensus       318 ~K~~-~~~~~e~~~r~e~IS~~-------~~~El~rF~~--~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~  382 (386)
T 4akv_A          318 GRMV-QDEADGIRRRCRVVGFA-------LQAEMNHFHQ--RRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRM  382 (386)
T ss_dssp             TSSC-HHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCcc-HHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1234 25667788888887766       4444444433  22 113 468889999999999999988876554

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=94.97  E-value=2.3  Score=39.55  Aligned_cols=93  Identities=11%  Similarity=0.097  Sum_probs=62.3

Q ss_pred             HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhcc--CCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 018756           49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE--NNQNINENILPKAAAIYGDARKHVEKEQ  126 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e--~~~~~~~~~~~~a~~~~g~a~~~~~~~~  126 (351)
                      .++.|+.-+..+..+=+||+..+.-=...=   -|-+..|..-+.+|..-  .+  .+.+.|..|.-.+-..+..++...
T Consensus        30 g~~~l~~r~~~g~~~~~el~~f~keRa~iE---~eYak~L~kLakk~~~~~~~~--~e~gtl~~aw~~i~~e~e~~a~~H  104 (312)
T 3abh_A           30 NYKRTVKRIDDGHRLCSDLMNCLHERARIE---KAYAQQLTEWARRWRQLVEKG--PQYGTVEKAWMAFMSEAERVSELH  104 (312)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC--CCCChHHHHHHHHHHHHHHHHHHH
Confidence            566667667777777666666553221111   12233455555556421  11  123468899999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHhhh
Q 018756          127 EDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       127 ~~l~~~~~~~~~~PL~~~~~  146 (351)
                      ..|...|.+.+++||+.++.
T Consensus       105 ~~~a~~L~~~v~~~l~~~~~  124 (312)
T 3abh_A          105 LEVKASLMNDDFEKIKNWQK  124 (312)
T ss_dssp             HHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998865

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=94.95  E-value=2.6  Score=40.05  Aligned_cols=95  Identities=11%  Similarity=0.093  Sum_probs=62.6

Q ss_pred             HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 018756           49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQED  128 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~  128 (351)
                      .++.|+.-+..+..+=+||+..++-=...=   -|-+..|..-+.+|..-.....+.+.|..|.-.+-..+..++.....
T Consensus        30 g~~~L~~r~~~g~~~~~el~~f~keRa~IE---~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~  106 (350)
T 3aco_A           30 NYKRTVKRIDDGHRLCSDLMNCLHERARIE---KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLE  106 (350)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666667666666665553221111   12233455555666531100112346889999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHhhh
Q 018756          129 FNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       129 l~~~~~~~~~~PL~~~~~  146 (351)
                      |...|.+++++||+.++.
T Consensus       107 la~~L~~~v~~~l~~~~~  124 (350)
T 3aco_A          107 VKASLMNDDFEKIKNWQK  124 (350)
T ss_dssp             HHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998865

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=94.35  E-value=0.076  Score=40.01  Aligned_cols=42  Identities=24%  Similarity=0.342  Sum_probs=35.6

Q ss_pred             cccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756          301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       301 sf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      .+..|+.+.|+... .+|+....+|..||++..|+....+.|.
T Consensus        26 ~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~~~~~   67 (74)
T 2krs_A           26 TLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVNEGSL   67 (74)
T ss_dssp             EEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESSSSCC
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCCCccc
Confidence            56789999998764 5899999999999999999998776654

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=93.82  E-value=4.4  Score=38.06  Aligned_cols=41  Identities=12%  Similarity=0.131  Sum_probs=37.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756          106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      +.|..|...+-..+..++.....|...|.+++++||+.++.
T Consensus        75 gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~  115 (337)
T 2x3v_A           75 GSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQK  115 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888988888999999999999999999999999999865

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=93.73  E-value=4  Score=37.31  Aligned_cols=96  Identities=17%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCC---CCCCCCchhHHHHHHHHHHHHHHHH
Q 018756           49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN---QNINENILPKAAAIYGDARKHVEKE  125 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~---~~~~~~~~~~a~~~~g~a~~~~~~~  125 (351)
                      .++.|+.-+..+..+=+||+..++--...=-   |-+..|..-+.+|.....   .....+++..|...+-..+..++..
T Consensus        15 g~~~l~~r~~~g~~~~~el~~f~~eRa~iE~---eYak~L~kLa~~~~~~~~~~~~~~~~~t~~~aw~~~~~~~e~~a~~   91 (305)
T 2efl_A           15 QFDNLEKHTQWGIDILEKYIKFVKERTEIEL---SYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQ   91 (305)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccccCccccccccHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666665554433222211   222233334444432210   0001346888888888888999999


Q ss_pred             HHHHHHHHHhhhhhHHHHhhhc
Q 018756          126 QEDFNRLLSSQVLDPLRAMITG  147 (351)
Q Consensus       126 ~~~l~~~~~~~~~~PL~~~~~~  147 (351)
                      ...+...|.+++++||..+...
T Consensus        92 h~~~a~~l~~~v~~~l~~~~~~  113 (305)
T 2efl_A           92 HEVISENMASQIIVDLARYVQE  113 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998763

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=93.59  E-value=4.4  Score=37.25  Aligned_cols=41  Identities=7%  Similarity=-0.017  Sum_probs=37.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756          106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      +.|..|...+-..+..++.....+..+|..++++||+.++.
T Consensus        63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~  103 (290)
T 3i2w_A           63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQK  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888988888899999999999999999999999999885

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=93.44  E-value=0.12  Score=39.29  Aligned_cols=41  Identities=17%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             cccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756          301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       301 sf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      .+..|+.+.|+.. ..+|+....+|..||+...|+....+.+
T Consensus        28 ~l~~G~~v~vl~~-~~~W~kV~~~g~~GwV~~~yl~~~~~~~   68 (76)
T 2kt8_A           28 SLSGNTKVTIVGE-EGAFYKIEYKGSHGYVAKEYIKDIKDEV   68 (76)
T ss_dssp             EECTTCEEEEEEE-ETTEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             EECCCCEEEEEEE-eCCEEEEEECCEEEEEEhHHhCcCCCcc
Confidence            5678999999876 4689999999999999999999876544

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=93.44  E-value=6.3  Score=38.57  Aligned_cols=111  Identities=12%  Similarity=0.020  Sum_probs=65.1

Q ss_pred             HHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhcc--CCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756           50 LEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE--NNQNINENILPKAAAIYGDARKHVEKEQE  127 (351)
Q Consensus        50 ~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e--~~~~~~~~~~~~a~~~~g~a~~~~~~~~~  127 (351)
                      .+-|..-|..+.+|=.||...+.-=..+=   -|-+..|..-+.||...  .+ ...++.+..|...+-....+++..+.
T Consensus        14 f~~L~kr~~~g~~lledl~~F~reRA~IE---~eYAk~L~kLakk~~~k~~~~-~~~~~tl~~aW~~ll~ete~~a~~H~   89 (406)
T 4dyl_A           14 HGVLQQMQEAELRLLEGMRKWMAQRVKSD---REYAGLLHHMSLQDSGGQSRA-ISPDSPISQSWAEITSQTEGLSRLLR   89 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHC-------------CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccccC-CCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            34444445556666666555553222211   12233455555666541  11 12456788999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhc------ChhhhhhhhhhhhHhhh
Q 018756          128 DFNRLLSSQVLDPLRAMITG------APLEDARHLAQRYSRMR  164 (351)
Q Consensus       128 ~l~~~~~~~~~~PL~~~~~~------~~~e~~R~L~~dy~rlr  164 (351)
                      .+..++..++++||..++..      ...+.+++|...+.+..
T Consensus        90 ~lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~  132 (406)
T 4dyl_A           90 QHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTH  132 (406)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988762      22234555555544444

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}

Probab=93.33  E-value=5.5  Score=37.64  Aligned_cols=118  Identities=13%  Similarity=0.137  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhhhchhhhhHHHH--------------HHhHHHhhcCcc-------h-hhhhhhhhHHHhhhh-ccCCCCC
Q 018756           47 HQQLEKLYRSTRGTKDFQRDLV--------------KVAEVFTAIGYK-------H-IEAGTKLSEDCCRYG-AENNQNI  103 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~q~~~v--------------r~~~~~~~~~~~-------q-~E~~~~l~e~~~kyg-~e~~~~~  103 (351)
                      .|-.+=|-.-.+.||.+-+|+.              ++..-++.-..|       + +|.+-.=+|++.+|+ .++|   
T Consensus        42 ~qa~~iL~~Rl~~~k~i~keL~~f~kERa~IEe~YakqLrkLakk~~~l~k~~~~~~~~~~vlt~ee~~~~~~~e~G---  118 (287)
T 3g9g_A           42 YEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLG---  118 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTSSCHHHHHHCCCCCST---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccchhhccccccccc---
Confidence            4455555566666777666644              444444443332       1 222212256777777 5554   


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh-hhhhhhhhhhHhhhhHHHHHHHHHHHH
Q 018756          104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL-EDARHLAQRYSRMRQEAETQAVEVSKR  177 (351)
Q Consensus       104 ~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~-e~~R~L~~dy~rlrqe~E~~~~e~~rr  177 (351)
                         .|..+...+-.+...++.....|...|..+++.||+.+..++.. -+.|++-+       +++..+.++++-
T Consensus       119 ---~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~~~~~~e~~~l~~-------~L~~~ak~le~~  183 (287)
T 3g9g_A          119 ---ELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHS-------KLSKNAASIEHY  183 (287)
T ss_dssp             ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSSCHHHHHHHHHHH-------HHHHHHHHHHHC
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence               58888888888899999999999999999999999999976532 23454444       344445554443

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=91.78  E-value=0.094  Score=39.03  Aligned_cols=39  Identities=28%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             cccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756          301 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       301 sf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      .+..|+.+.|+.. ..+|+....+|..||++..|+....-
T Consensus        27 ~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~~   65 (70)
T 2kq8_A           27 ALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLEH   65 (70)
T ss_dssp             CCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCCS
T ss_pred             EECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchhh
Confidence            4678888888876 46899999999999999999986543

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=91.32  E-value=8.5  Score=35.16  Aligned_cols=96  Identities=17%  Similarity=0.061  Sum_probs=60.8

Q ss_pred             HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC---CCCCCCCchhHHHHHHHHHHHHHHHH
Q 018756           49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN---NQNINENILPKAAAIYGDARKHVEKE  125 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~---~~~~~~~~~~~a~~~~g~a~~~~~~~  125 (351)
                      .++.|+.-+..+..+=+||...++-=...=-   |-+..|..-+.+|....   .+....++|..|...+-.....++..
T Consensus         8 g~~~l~~~~~~g~~~~~el~~f~keRa~iE~---eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~   84 (301)
T 2efk_A            8 QFEVLERHTQWGLDLLDRYVKFVKERTEVEQ---AYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQ   84 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666665555432222111   22233444455564320   10011347888988888889999999


Q ss_pred             HHHHHHHHHhhhhhHHHHhhhc
Q 018756          126 QEDFNRLLSSQVLDPLRAMITG  147 (351)
Q Consensus       126 ~~~l~~~~~~~~~~PL~~~~~~  147 (351)
                      ...|...|..++++||..+...
T Consensus        85 h~~~a~~L~~~v~~~l~~~~~~  106 (301)
T 2efk_A           85 RELVAENLSVRVCLELTKYSQE  106 (301)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998763

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=91.20  E-value=10  Score=35.76  Aligned_cols=92  Identities=13%  Similarity=0.104  Sum_probs=58.3

Q ss_pred             HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhc--cCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 018756           49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGA--ENNQNINENILPKAAAIYGDARKHVEKEQ  126 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~--e~~~~~~~~~~~~a~~~~g~a~~~~~~~~  126 (351)
                      ..+.||.-+..+..+=++|+..+.-=...=.   |-+..|..-+.+|-.  +.+  .+.+.|..|...+-..+..++...
T Consensus        21 g~~~l~~~~~~g~~~~~el~~f~keRa~iE~---~Yak~L~kLakk~~~~~~~~--~e~gsl~~aw~~i~~e~e~~a~~H   95 (320)
T 3m3w_A           21 NYRRTVQRVEDGHRLCGDLVSCFQERARIEK---AYAQQLADWARKWRGAVEKG--PQYGTLEKAWHAFFTAAERLSELH   95 (320)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCC--CCCChHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666665555432221111   112233333334321  111  123468899999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHhh
Q 018756          127 EDFNRLLSSQVLDPLRAMI  145 (351)
Q Consensus       127 ~~l~~~~~~~~~~PL~~~~  145 (351)
                      ..+..+|..++++||+.++
T Consensus        96 ~~~a~~l~~~v~~~l~~~~  114 (320)
T 3m3w_A           96 LEVREKLHGPDSERVRTWQ  114 (320)
T ss_dssp             HHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999886

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=90.64  E-value=9.3  Score=34.42  Aligned_cols=90  Identities=8%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 018756           49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQED  128 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~  128 (351)
                      .++.|+.-+..+..+=+||...++-=...=.   |-+..|..-+.+|....    ..+.|..+.-.+-+....++.....
T Consensus        19 g~~~l~~~~~~g~~~~~el~~f~~eRa~iE~---eYak~L~kLa~~~~~~~----~~gs~~~~w~~~~~~~e~~a~~h~~   91 (276)
T 2v0o_A           19 GFDVLYHNMKHGQISTKELADFVRERATIEE---AYSRSMTKLAKSASNYS----QLGTFAPVWDVFKTSTEKLANCHLD   91 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTSC----CCSSSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666555543222211   22233444445554321    2335777777777777899999999


Q ss_pred             HHHHHHhhhhhHHHHhhh
Q 018756          129 FNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       129 l~~~~~~~~~~PL~~~~~  146 (351)
                      +...+ .++++||..+..
T Consensus        92 ~a~~l-~~~~~~l~~~~~  108 (276)
T 2v0o_A           92 LVRKL-QELIKEVQKYGE  108 (276)
T ss_dssp             HHHHH-HHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHH
Confidence            99999 599999999876

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=88.27  E-value=0.26  Score=35.26  Aligned_cols=18  Identities=28%  Similarity=0.455  Sum_probs=14.9

Q ss_pred             CeeeEecCCceeeccCCC
Q 018756          325 GKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       325 Gk~G~FPsnYVe~i~~~p  342 (351)
                      |+.||||.+||+.+.+.+
T Consensus         2 g~~G~~P~~yv~~~~~~~   19 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGT   19 (62)
T ss_dssp             CEEEEEEGGGEEECCCCS
T ss_pred             CCccccccceEeecCCCC
Confidence            789999999999876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	2e-14
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-14
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-13
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	4e-13
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	1e-12
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-12
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-12
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	4e-12
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-12
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	5e-12
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	7e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-11
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	2e-11
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	4e-11
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	4e-11
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	7e-11
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	8e-11
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	2e-10
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-10
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	3e-10
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	5e-10
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	6e-10
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	6e-10
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	7e-10
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	9e-10
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-09
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	1e-09
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-09
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	3e-09
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-09
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-09
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	4e-09
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	6e-09
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	8e-09
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-08
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	3e-08
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	7e-08
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-07
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-07
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	4e-07
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	8e-07
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	1e-05
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	0.001
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	0.001
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	0.002
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	0.004

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 276 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
           + S  +   + +A   F   +E ELS+  GD + V +V   GW EG   G+ GWFPS  V
Sbjct: 3   SGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

Query: 336 EKRQRIPVS 344
            + +    S
Sbjct: 63  REIKSSERS 71

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 9e-14
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V  
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 55

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
            +A+  F      EL+   GD + +       W EG+   + G FPS  V 
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (149), Expect = 4e-13
 Identities = 18/52 (34%), Positives = 22/52 (42%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A A++ F A  E EL    G+ V V   S   W  G    K G FP+  V  
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
            EA+  + A   ++L    GD ++V       W EGE KGK G FP   VE 
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 344
           A++P+++    +L+   G+ ++V +     W  G    ++G FPS  V+ +   P S
Sbjct: 13  ALYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           A++ +   S +E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 5   ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (142), Expect = 4e-12
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
             A++ F A  + EL+   G+ + V   S + W +GE     G FPS  V 
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 4e-12
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 267 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 326
           S+    P+ +   + +     A++ + A +E ELS   G  + V       W +GE  G 
Sbjct: 23  SSERATPAFHPVCQVI-----AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV 77

Query: 327 AGWFPSANVEK 337
            G FPS  V+ 
Sbjct: 78  TGLFPSNYVKM 88

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 5e-12
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 276 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVV-RKVSPSGWSEGECKGKAGWFPSAN 334
           + S    +  A+A++   A  + ELS   G            GW EG   GK G  P   
Sbjct: 3   SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENY 62

Query: 335 VE 336
           VE
Sbjct: 63  VE 64

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 7e-12
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 11/203 (5%)

Query: 49  QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL 108
           +LE      R TK     ++++    TA  Y  ++    L +       ++ +      L
Sbjct: 7   ELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE------L 60

Query: 109 PKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAE 168
            +      + +K + K  E     ++  V      +     +ED     ++Y   R E +
Sbjct: 61  QEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTK--TMEDTLMTVKQYEAARLEYD 118

Query: 169 TQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRL 228
               ++ +     R+A       +L +A+A  Q  +     L  + A  L  +E  + ++
Sbjct: 119 AYRTDLEELSLGPRDAGTRG---RLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKV 175

Query: 229 TFQRLVAMVEGEKNYHLRIAAIL 251
             ++L+        Y       L
Sbjct: 176 MHKQLLLFHNAVSAYFAGNQKQL 198

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A+A+  +TA  +  L+    D + V +     W  GE  G  GWFP + V+
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVHGGRGWFPKSYVK 62

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
           A A + F A ++ ELS   GD + V+ +     W + E  GK G+ P   +E +
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 337
             A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 4e-11
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGKAGWFPSANVEKRQRIPV 343
           A++ F A +  ELS+     + + +       + W   E  GK G+ PS  + K +  P 
Sbjct: 18  AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS 77

Query: 344 S 344
           S
Sbjct: 78  S 78

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-GWFPSANVEK 337
            +A+  + A  E EL+      +   +    GW  G+  GK   WFPS  VE+
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 7e-11
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 288 AIHPFTAASEKELSLGVGDYVVV-RKVSPSGWSEGECKGKAGWFPSANVE 336
           A++ F A+ +  LS+  G+ + V        W E + K   GW PS  + 
Sbjct: 5   ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYIT 54

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (132), Expect = 8e-11
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVE 336
           A A + + AA + EL+    D ++  +     W  GE +  G  G FPS  V 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECKGKAGWFPSANVE 336
           A+  +   ++ EL +  GD + +          W       K G+ P   + 
Sbjct: 9   ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVE 336
           A A++ F      +L    GD + + K   S + W  G   G+ G FP+  VE
Sbjct: 4   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 3e-10
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340
           AI  +TA    E+SL  G+ V V      GW         G+FPS  ++K  +
Sbjct: 19  AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ 71

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVV-VRKVSPSGWSEGECK-GKAGWFPSANVEKRQRIP 342
             A + F   +E++L    GD +  V       W + + K G+ G  P+  V+KR+ + 
Sbjct: 9   CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 67

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQ 339
           A++ + + +E +LS   G+ + +   +   W        G+ G+ PS  V    
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS-EGECKGKAGWFPSANVEK 337
           L  A+H +  + + +L    G+ + + + S   W  +    G+ G+ P   V K
Sbjct: 8   LVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 339
           A++ F A    +L L  G   ++ + +   W     K G  G+ PS  V  ++
Sbjct: 7   AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 9e-10
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 339
           A++ +   +  +L L  GD   + + S   W     K G+ G+ PS  V + +
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
           A++ + A +E +LS   G+   +   S   W E      G+ G+ PS  V  
Sbjct: 5   ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
           A++ + AA   E+S   GD ++  +    GW  G  +  G+ G  P+  VE 
Sbjct: 8   AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWS-EGECKGKAGWFPSANVEKRQRIP 342
           A++ + A   ++LS   GD +VV + S   W        K G+ PS  V +   + 
Sbjct: 9   ALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLE 64

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 282 VYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGE-CKGKAGWFPSANVEKR 338
           V  + + ++PF++ +E+EL+   G+ + V  +  +   W + +  +G+ G  P   V   
Sbjct: 5   VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 64

Query: 339 QRIPVSN 345
              P  +
Sbjct: 65  SDGPALH 71

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 288 AIHPFTAASEKELSLGVGDYV--VVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 344
           A++PF A +  E+S   GD +    + V   GW  G  +G  GWFP   VEK       
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-----KGKAGWFPSANVEK 337
           +A+    + A+  ++LSL  G  +++ K + SGW +GE      K + GWFP+++V+ 
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 288 AIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVE 336
            I P   A    L L  GD V + +  +   W EG      + GWFP   V 
Sbjct: 15  GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 6e-09
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
           AI  +   S  E++L  GD V V + S SGW   + K K GW P++ +E 
Sbjct: 7   AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 56

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 8e-09
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           AI  +TA    E+SL  G+ V V      GW         G+FPS  ++
Sbjct: 5   AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
           A++ + F A +  ELS+   D + +       W      G +G+ P+  ++
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILD 54

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 15/71 (21%)

Query: 282 VYFLAEAIHPFTAASEKELSLGVGDYVVV-----RKVSPSGWSEG----------ECKGK 326
             F  +A H +TA    EL L  GD V+V      +    GW  G          E +  
Sbjct: 11  FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKC 70

Query: 327 AGWFPSANVEK 337
            G FP    E+
Sbjct: 71  RGVFPENFTER 81

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 7e-08
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 337
           A++ +     +EL+L   +   +   S   W   +   G  G+ PS+ + +
Sbjct: 3   ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 53

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 286 AEAIHPFTAAS-EKELSLGVGDYV-VVRKVSPSG-----WSEGECKGKAGWFPSANVE 336
           A A++ F   + E E++L  GD + ++ K  P G     W      G  G+ P   +E
Sbjct: 8   ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 65

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSG--WSEGECKGKAGWFPSANVE 336
            + ++ +    + E+++  GD + +V + + SG      +  G+ G  P+  + 
Sbjct: 2   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 286 AEAIHPFTAA-SEKELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVEK 337
            + I P TA  ++  LS   GD + ++      GW  GE       GWFPS+  + 
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 8e-07
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 17/78 (21%)

Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS---------------GWSEG--ECKGK 326
           +   A++ +    E+++ L +GD + V K S                 GW  G  E  G+
Sbjct: 4   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63

Query: 327 AGWFPSANVEKRQRIPVS 344
            G FP   VE   R  +S
Sbjct: 64  RGDFPGTYVEYIGRKKIS 81

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGW------SEGECKGKA 327
           S +S           I  + A  E E+ +  G+ V V  V+          +        
Sbjct: 3   SGSSGSTMT-----VIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAE 57

Query: 328 GWFPSANVEK 337
           GW P + +  
Sbjct: 58  GWVPGSILAP 67

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 267 SAPPVIPSENSSQKAVYFLA----EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEG 321
           S       +  S K    +A              E EL L  G Y+ V   +   G+ EG
Sbjct: 3   SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62

Query: 322 E-CKGKAGWFPSANVEK 337
           E   G+ G  PS  V+ 
Sbjct: 63  ELLDGQRGLVPSNFVDF 79

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 264 RKESAPPVIPS-ENSSQKAVYFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSP 315
           R+E+        E +  K V F       ++AA E +       +S    D++ V++   
Sbjct: 1   RREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFN 60

Query: 316 SGWSEGEC---KGKAGWFPSANVEKRQRI 341
           + W  G       + G+ PS    +  R+
Sbjct: 61  NDWWIGRLVKEGCEIGFIPSPVKLENMRL 89

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVR-----------KVSPSGWSEGECKGKAGWFPSA 333
           +A A+  + A   + L++  G  V V              S  G   G+   + G+FPS+
Sbjct: 23  MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 82

Query: 334 NVE 336
            V 
Sbjct: 83  IVR 85

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVS----PSGWSEGECKGKAGWFPSANVEKRQR 340
           L +A   F AA + ++SL  GD V V K             +     G+  S+ ++    
Sbjct: 19  LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNP 78

Query: 341 IP 342
             
Sbjct: 79  RR 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.61
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.59
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.59
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.58
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.58
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.56
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.54
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.54
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.54
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.53
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.53
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.53
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.51
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.5
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.49
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.49
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.49
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.48
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.48
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.48
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	99.47
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.47
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.46
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.46
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.45
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.45
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.44
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.44
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.44
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.43
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.43
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.42
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.42
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.42
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.41
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.4
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.39
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.38
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.36
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.35
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.34
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.31
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.31
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.29
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.25
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.12
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	99.05
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.96
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.82
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.94
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	94.25
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	93.47

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-15  Score=136.30  Aligned_cols=213  Identities=17%  Similarity=0.274  Sum_probs=159.4

Q ss_pred             HHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhch-hhhhHHHHHHhHHHh--------------------
Q 018756           17 KQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT-KDFQRDLVKVAEVFT--------------------   75 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~vr~~~~~~--------------------   75 (351)
                      |-+|.|.-.||++     +..=+|+.    ..+||+-+..+|.+ ++++|++.-.+.+-+                    
T Consensus         2 R~~q~~~ek~G~~-----e~T~ld~~----f~~lEk~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~   72 (237)
T d2d4ca1           2 KATQKVSEKVGGA-----EGTKLDDD----FKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEK   72 (237)
T ss_dssp             HHHHHHHHHHTSH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC--------------
T ss_pred             chhHHHHhHcCCC-----CcCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhccccc
Confidence            4567889999832     22224543    66788888888876 888888765554321                    


Q ss_pred             hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhh
Q 018756           76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARH  155 (351)
Q Consensus        76 ~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~  155 (351)
                      ..++|+.+.  .||++|..+|.+++   .++.+|.++..||+++..|+..+..++..+.+.|++||+.++..|+.+.   
T Consensus        73 ~~~~~~~~~--~l~~~~~~~~~~~~---~d~~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~d~~~~---  144 (237)
T d2d4ca1          73 GPGYPQAEA--LLAEAMLKFGRELG---DDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREI---  144 (237)
T ss_dssp             ---CCCHHH--HHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHH---
T ss_pred             ccchhhhhH--HHHHHHHHhcccCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            224667776  79999999999999   7899999999999999999999999999999999999999999877654   


Q ss_pred             hhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhhHhHHH
Q 018756          156 LAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ-QHRLTFQRLV  234 (351)
Q Consensus       156 L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~q-qq~lt~~~L~  234 (351)
                       ...+++.|..++....++++.+.+...  .++  ++|+.|+.+|+.++..       +...|..+... ..-  +..|.
T Consensus       145 -~~~~~~~rk~~d~~~~~~~~~~~k~~~--~~~--e~l~~a~~~~e~~~~~-------~~~~l~~l~~~~~~~--~~~l~  210 (237)
T d2d4ca1         145 -QSALQHHLKKLEGRRLDFDYKKKRQGK--IPD--EELRQALEKFDESKEI-------AESSMFNLLEMDIEQ--VSQLS  210 (237)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHSS--CCH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhhh--hhH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHccHHH--HHHHH
Confidence             123344444455555555444444322  233  7899999999999887       77778876542 222  57899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          235 AMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       235 ~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      .|+++++.||+.+.++|++|...+..
T Consensus       211 ~~~~aq~~y~~~~~~~l~~l~~~l~~  236 (237)
T d2d4ca1         211 ALVQAQLEYHKQAVQILQQVTVRLEE  236 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988753

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=5e-16  Score=112.97  Aligned_cols=54  Identities=33%  Similarity=0.480  Sum_probs=52.1

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      .|+|+|||.+++++||+|.+||.|.|++..++|||.|+.+|+.||||++||+++
T Consensus         3 yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            689999999999999999999999999999999999999999999999999986

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.1e-16  Score=111.12  Aligned_cols=55  Identities=29%  Similarity=0.596  Sum_probs=52.0

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+++
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            3589999999999999999999999999988999999999999999999999875

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.8e-16  Score=122.63  Aligned_cols=59  Identities=29%  Similarity=0.445  Sum_probs=55.2

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...|+|||||+++.++||+|++||+|.|++..++|||.|+++|+.||||+|||+.+.+.
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCCC
Confidence            45799999999999999999999999999999999999999999999999999988754

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=1.6e-15  Score=109.48  Aligned_cols=54  Identities=24%  Similarity=0.455  Sum_probs=51.4

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      .++|+|||.++.++||+|++||.|.|++..++|||.|+++|+.||||+|||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            368999999999999999999999999999999999999999999999999875

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.58  E-value=1.6e-15  Score=110.62  Aligned_cols=55  Identities=25%  Similarity=0.451  Sum_probs=52.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..|+|+|+|.++.+++|+|.+||+|.|++..++|||.|+++|+.||||++||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            4689999999999999999999999999999999999999999999999999865

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.2e-15  Score=109.82  Aligned_cols=54  Identities=30%  Similarity=0.467  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      ..|+|+|+|.++.++||+|++||+|.|++..++|||.|+.+|+.||||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            469999999999999999999999999999999999999999999999999973

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-15  Score=111.86  Aligned_cols=55  Identities=35%  Similarity=0.578  Sum_probs=52.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|+|.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||++.
T Consensus         6 ~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            4689999999999999999999999999999999999999999999999999865

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.8e-15  Score=108.31  Aligned_cols=55  Identities=29%  Similarity=0.389  Sum_probs=51.7

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      |.|+|+|+|.+..++||+|.+||+|.|++..++|||.|.+  +|+.||||+|||+.+
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            4699999999999999999999999999999999999997  689999999999876

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-15  Score=115.86  Aligned_cols=59  Identities=36%  Similarity=0.682  Sum_probs=55.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...++|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||.+||+.+...
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~~   68 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHH
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCCC
Confidence            45789999999999999999999999999998999999999999999999999988653

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.6e-15  Score=112.65  Aligned_cols=58  Identities=28%  Similarity=0.499  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...++|+|||.+..++||+|.+||+|.|++. +++||.|+++|+.||||.|||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            4579999999999999999999999999987 568999999999999999999998654

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.2e-15  Score=109.65  Aligned_cols=55  Identities=35%  Similarity=0.511  Sum_probs=52.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||.+.++++|+|++||+|.|++..++|||.|+++|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            4689999999999999999999999999999999999999999999999999875

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=6.7e-15  Score=107.20  Aligned_cols=55  Identities=29%  Similarity=0.483  Sum_probs=50.5

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCC--CCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d--~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      |.|+|+|+|.+++++||+|.+||+|.|++..+  .+||.|.++|+.||||++||+.|
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            46999999999999999999999999998763  58999999999999999999875

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.9e-15  Score=105.69  Aligned_cols=51  Identities=31%  Similarity=0.395  Sum_probs=49.2

Q ss_pred             EEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCcee
Q 018756          286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE  336 (351)
Q Consensus       286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe  336 (351)
                      ++|+|+|.++.++||+|.+||+|.|+++.++|||.|+++|+.||||++||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            579999999999999999999999999999999999999999999999986

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.7e-14  Score=109.76  Aligned_cols=61  Identities=28%  Similarity=0.553  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC-----CeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~-----Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|++..++|||.|.++     |+.||||++||+.+.+.+.
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~~   72 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSE   72 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCCS
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCCC
Confidence            356999999999999999999999999999999999999874     4589999999999876544

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-14  Score=110.91  Aligned_cols=61  Identities=26%  Similarity=0.404  Sum_probs=55.6

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC----CCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS----PSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~----d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ..++|+|+|.+..++||+|.+||+|.|++..    +.|||.|+++|+.||||++||+.+.+.|.+
T Consensus        14 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~pss   78 (79)
T d1uhca_          14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS   78 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCCC
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCCCCC
Confidence            4589999999999999999999999999764    468999999999999999999999888765

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=117.07  Aligned_cols=56  Identities=30%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  339 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~  339 (351)
                      ..++|+|||.+..++||+|.+||+|.|++..++|||.|.++|+.||||++||+.+.
T Consensus        15 ~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          15 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG   70 (118)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETT
T ss_pred             cEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECC
Confidence            46789999999999999999999999999999999999999999999999999864

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=109.69  Aligned_cols=61  Identities=23%  Similarity=0.400  Sum_probs=55.2

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~s  344 (351)
                      ...++|+|+|.+..++||+|++||+|.|++. +++||.|+++|+.||||.+||+++...|.+
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~~pss   68 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS   68 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCCC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCCCCCC
Confidence            3568999999999999999999999999977 568999999999999999999998777754

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=105.19  Aligned_cols=53  Identities=32%  Similarity=0.486  Sum_probs=45.2

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeee-CCCCeeEEEECCeeeEecCCceee
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEK  337 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~~Gk~G~FPsnYVe~  337 (351)
                      .|+|+|||.+.+++||+|++||.|.|++. .+++||.|.++|+.||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            58999999999999999999999998865 467899999999999999999974

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2e-14  Score=104.28  Aligned_cols=53  Identities=30%  Similarity=0.540  Sum_probs=50.0

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceee
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEK  337 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~  337 (351)
                      .++|+|||.++++++|+|++||+|.|++..++|||.|+. +|+.||||++||++
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            589999999999999999999999999999999999985 78999999999985

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-14  Score=106.81  Aligned_cols=61  Identities=21%  Similarity=0.432  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCC--CCeeEEE-ECCeeeEecCCceeeccCCCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGE-CKGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d--~gWweG~-~~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      ...|+|+|||.++.++||+|.+||+|.|++..+  +|||.++ .+|+.||||.|||+.+...|.
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~p~   69 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCCCC
Confidence            457999999999999999999999999997643  4899998 489999999999999987664

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.3e-14  Score=107.16  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=49.6

Q ss_pred             cceEEEEecCCCCCCC-CCccccCCCEEEEeeeCC-----CCeeEEEE-CCeeeEecCCceeec
Q 018756          282 VYFLAEAIHPFTAASE-KELSLGVGDYVVVRKVSP-----SGWSEGEC-KGKAGWFPSANVEKR  338 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~-~ELsf~~GD~I~Vl~~~d-----~gWweG~~-~Gk~G~FPsnYVe~i  338 (351)
                      ....|+|+|+|.+.++ .||+|++||+|.|+++.+     .|||.|+. +|+.||||+|||+.|
T Consensus         4 ~~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           4 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             cCEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            3457999999999876 499999999999998754     48999986 899999999999875

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-14  Score=106.10  Aligned_cols=55  Identities=27%  Similarity=0.473  Sum_probs=51.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||.+.+++||+|.+||+|.|+...++|||.|.+  +|+.||||+|||+.+
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            3589999999999999999999999999999999999997  689999999999875

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-12  Score=116.46  Aligned_cols=194  Identities=9%  Similarity=0.102  Sum_probs=124.0

Q ss_pred             hchhhhhH---HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018756           58 RGTKDFQR---DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLS  134 (351)
Q Consensus        58 ~~~~~~q~---~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~  134 (351)
                      .+.|.+.+   .|.+++.++..+     ..  .++|+|.++|...+.......+|.||..+|++++.|++.++.|...+.
T Consensus        26 p~~k~li~~~k~y~~a~~~~~~a-----~~--~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~   98 (248)
T d1y2oa1          26 PSLRNFIAMGKNYEKALAGVTYA-----AK--GYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFH   98 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444443   366776665444     33  688999998854221223456999999999999999999999999999


Q ss_pred             hhhhhHHHHhhhcChhhh---hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHh
Q 018756          135 SQVLDPLRAMITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAIL  210 (351)
Q Consensus       135 ~~~~~PL~~~~~~~~~e~---~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l  210 (351)
                      ++|++||+.++.+|++++   -++++..+++.+..++....+..+-+.|.+... ......+...+++-+...+..+..+
T Consensus        99 ~~~i~PL~~~~~~d~k~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  178 (248)
T d1y2oa1          99 NELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENY  178 (248)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998864   233333444444444444444433222222211 1111245555555555555544333


Q ss_pred             hHHHHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          211 GKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       211 ~kea~~am~~ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      ...+..-.. ++ ...|++  ++.|++|++++.+||.++.+++.++.+.+..
T Consensus       179 l~~~~~~~~-~e-erkr~~~lv~~l~~~~~a~~~~~~q~~~~l~~~~~~~~~  228 (248)
T d1y2oa1         179 VSDGYKTAL-TE-ERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQ  228 (248)
T ss_dssp             HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            222211100 11 224454  5899999999999999999999999988764

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.1e-14  Score=105.32  Aligned_cols=55  Identities=16%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCC---CCeeEEEECCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP---SGWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d---~gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      ..++|+|||.+++++||+|++||+|.|++..+   .|||.|+.+|+.||||++||+.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            46899999999999999999999999997653   37999999999999999999865

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=4.3e-14  Score=105.58  Aligned_cols=59  Identities=20%  Similarity=0.358  Sum_probs=53.4

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCCCC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIPV  343 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p~  343 (351)
                      .++|+|||.+.+++||+|++||+|.|+...+.+||.+.. +|+.||||++||+.+.+...
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~~~   63 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNNL   63 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCCCc
Confidence            479999999999999999999999999999999999974 78999999999998766544

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-14  Score=108.23  Aligned_cols=58  Identities=31%  Similarity=0.425  Sum_probs=51.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCC-CCeeEEEECCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d-~gWweG~~~Gk~G~FPsnYVe~i~~  340 (351)
                      ...|+|+|+|.+..++||+|.+||+|.|++..+ ++||.|.++|+.||||.|||+.+..
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            346999999999999999999999999887654 5799999999999999999998854

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.46  E-value=2.6e-14  Score=102.18  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             EEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-ECCeeeEecCCceee
Q 018756          286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK  337 (351)
Q Consensus       286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~~Gk~G~FPsnYVe~  337 (351)
                      +.|+|||.+..++||+|++||+|.|++..++|||.++ .+|+.||||+|||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            4799999999999999999999999999999999998 478999999999974

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=6.1e-14  Score=101.64  Aligned_cols=54  Identities=28%  Similarity=0.494  Sum_probs=48.8

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCC-CeeEEEECCeeeEecCCceeec
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGECKGKAGWFPSANVEKR  338 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~-gWweG~~~Gk~G~FPsnYVe~i  338 (351)
                      .+.|+|||.+..++||+|++||+|.|+...++ +||.++.+|+.||||++||+++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            37899999999999999999999999977655 5788999999999999999876

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-14  Score=107.44  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~  340 (351)
                      ...++|+|+|.+.+++||+|++||+|.|++..+.+||.+.. +|+.||||++||+.+.+
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            45789999999999999999999999999998999999975 79999999999987653

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.3e-14  Score=100.55  Aligned_cols=53  Identities=26%  Similarity=0.450  Sum_probs=49.6

Q ss_pred             EEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756          286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      ++|+|||.+.+++||+|++||.|.|++..+++||.+..  +|+.||||+|||+++
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            57999999999999999999999999999999999986  789999999999864

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.4e-14  Score=109.22  Aligned_cols=58  Identities=34%  Similarity=0.615  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeeccCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~~~  341 (351)
                      ..++|+|||.+.+++||+|++||+|.|+++.  +.+||.+.++|+.||||+|||+.+...
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            3589999999999999999999999999765  467999999999999999999988654

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=7e-14  Score=105.88  Aligned_cols=57  Identities=30%  Similarity=0.496  Sum_probs=49.1

Q ss_pred             eEEEEecCCCCC-CCCCccccCCCEEEEeee-CCCCeeEEEE--CCeeeEecCCceeeccC
Q 018756          284 FLAEAIHPFTAA-SEKELSLGVGDYVVVRKV-SPSGWSEGEC--KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       284 ~~~~ALydf~a~-~~~ELsf~~GD~I~Vl~~-~d~gWweG~~--~Gk~G~FPsnYVe~i~~  340 (351)
                      ..|+|+|||.+. +++||+|.+||+|.|+.. .++|||.|++  +|+.||||+|||+.+..
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            468999999985 578999999999999855 4568999997  48899999999999854

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.7e-14  Score=103.49  Aligned_cols=57  Identities=21%  Similarity=0.408  Sum_probs=52.0

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      .++|+|||.+..++||+|++||.|.|++..++|||.|..  +|+.||||++||+++..+
T Consensus         4 ~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s~   62 (64)
T d1fmka1           4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (64)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECccC
Confidence            578999999999999999999999999988899999986  689999999999987543

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-14  Score=109.21  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCe-eeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-AGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk-~G~FPsnYVe~i~~~  341 (351)
                      ...|+|+|+|.+.+++||+|.+||+|.|++..++|||.|+++|. .||||+|||+.+.+.
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            44689999999999999999999999999999999999997554 469999999987553

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-13  Score=103.61  Aligned_cols=59  Identities=24%  Similarity=0.437  Sum_probs=51.4

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEE-CCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGEC-KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~-~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|||.+.+++||+|.+||+|.|+... +.+||.+.. +|+.||||.+||+.+....
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~~~   67 (71)
T d1k9aa1           7 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK   67 (71)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             CEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcccCC
Confidence            4699999999999999999999999999875 557888886 5899999999999876543

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=7.8e-14  Score=101.69  Aligned_cols=55  Identities=20%  Similarity=0.306  Sum_probs=49.5

Q ss_pred             EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccC
Q 018756          285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~  340 (351)
                      .|+|+|||.+++++||+|.+||+|.|++.. ++||.+.. +|+.||||+|||+.+.+
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            589999999999999999999999999875 57998874 89999999999998753

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6.4e-14  Score=108.83  Aligned_cols=58  Identities=34%  Similarity=0.507  Sum_probs=50.4

Q ss_pred             cceEEEEecCCCCCCCCCccccCCCEEEEeeeC-----CCCeeEEEE----------CCeeeEecCCceeecc
Q 018756          282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGEC----------KGKAGWFPSANVEKRQ  339 (351)
Q Consensus       282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-----d~gWweG~~----------~Gk~G~FPsnYVe~i~  339 (351)
                      ....|+|+|+|.+.+++||+|++||+|.|++..     ++|||.|..          +|+.||||+|||+.++
T Consensus        11 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            456799999999999999999999999999754     468999975          3678999999999874

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.5e-14  Score=110.02  Aligned_cols=59  Identities=31%  Similarity=0.478  Sum_probs=51.8

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeC---------------CCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS---------------PSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~---------------d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...++|+|+|.+..++||+|++||+|.|+...               ++|||.|..  +|+.||||+|||+.+.+.
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~   78 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   78 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCc
Confidence            35789999999999999999999999998642               468999986  899999999999988653

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.3e-13  Score=103.35  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE------CCeeeEecCCceeeccC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC------KGKAGWFPSANVEKRQR  340 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~------~Gk~G~FPsnYVe~i~~  340 (351)
                      ...++|+|||.+..++||+|.+||+|.|++..++|||.++.      +|+.||||+|||+++..
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            35689999999999999999999999999999999999985      47899999999998753

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=107.91  Aligned_cols=59  Identities=24%  Similarity=0.112  Sum_probs=53.3

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCC----CCeeEEEECCeeeEecCCceeeccCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d----~gWweG~~~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ..|+|+|+|.+..++||+|.+||+|.|+++.+    .|||.++.+|+.||||+|||+++.+..
T Consensus        18 ~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~   80 (92)
T d1ug1a_          18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             eEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCcc
Confidence            35899999999999999999999999998754    689999999999999999999886543

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.2e-13  Score=100.00  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=50.6

Q ss_pred             ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeeccCC
Q 018756          283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  341 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i~~~  341 (351)
                      ...++|+|||.+..++||+|.+||.|.|++. +++||.+..  +|+.||||+|||+++.++
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECccC
Confidence            3468899999999999999999999999985 567998875  789999999999987654

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.5e-13  Score=97.74  Aligned_cols=52  Identities=13%  Similarity=0.410  Sum_probs=45.0

Q ss_pred             EEEecCCCCCCCCCccccCCCEEEEeeeCCCC-eeEEEE--CCeeeEecCCceee
Q 018756          286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGEC--KGKAGWFPSANVEK  337 (351)
Q Consensus       286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~g-WweG~~--~Gk~G~FPsnYVe~  337 (351)
                      ++|+|||.+++++||+|++||+|.|++..+.+ ||.+..  +|+.||||+|||+.
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            68999999999999999999999999876655 555553  79999999999973

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=6.7e-13  Score=99.82  Aligned_cols=56  Identities=29%  Similarity=0.472  Sum_probs=47.3

Q ss_pred             ceEEEEecCCCC------CCCCCccccCCCEEEEeee-CCCCeeEEEE--CCeeeEecCCceeec
Q 018756          283 YFLAEAIHPFTA------ASEKELSLGVGDYVVVRKV-SPSGWSEGEC--KGKAGWFPSANVEKR  338 (351)
Q Consensus       283 ~~~~~ALydf~a------~~~~ELsf~~GD~I~Vl~~-~d~gWweG~~--~Gk~G~FPsnYVe~i  338 (351)
                      .+.++++++|.+      .+++||+|++||+|.|++. .++|||.|+.  +|+.||||+|||++.
T Consensus         4 ~Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           4 MPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CCEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            356777877754      6788999999999999975 5679999996  799999999999975

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.7e-13  Score=106.31  Aligned_cols=61  Identities=31%  Similarity=0.377  Sum_probs=50.4

Q ss_pred             cceEEEEecCCCCCC------CCCccccCCCEEEEeeeCC-CCeeEEEE-CCeeeEecCCceeeccCCC
Q 018756          282 VYFLAEAIHPFTAAS------EKELSLGVGDYVVVRKVSP-SGWSEGEC-KGKAGWFPSANVEKRQRIP  342 (351)
Q Consensus       282 ~~~~~~ALydf~a~~------~~ELsf~~GD~I~Vl~~~d-~gWweG~~-~Gk~G~FPsnYVe~i~~~p  342 (351)
                      ....|+|+|||++..      ++||+|++||+|.|+...+ ++||.+.. +|+.||||+|||+.+...+
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~   84 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCcc
Confidence            346799999998753      5799999999999997655 46888874 8999999999999886554

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.4e-13  Score=96.79  Aligned_cols=53  Identities=23%  Similarity=0.466  Sum_probs=46.9

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceee
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEK  337 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~  337 (351)
                      ..++|+|||.+..++||+|.+||+|.|++..+ +||.+..  +|+.||||++||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            46899999999999999999999999998764 6877764  79999999999975

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.2e-13  Score=109.46  Aligned_cols=55  Identities=22%  Similarity=0.427  Sum_probs=48.7

Q ss_pred             eEEEEecCCCCCC-----CCCccccCCCEEEEeeeCCCCeeEEEE------CCeeeEecCCceeec
Q 018756          284 FLAEAIHPFTAAS-----EKELSLGVGDYVVVRKVSPSGWSEGEC------KGKAGWFPSANVEKR  338 (351)
Q Consensus       284 ~~~~ALydf~a~~-----~~ELsf~~GD~I~Vl~~~d~gWweG~~------~Gk~G~FPsnYVe~i  338 (351)
                      +.++|+|||.+..     ..||+|++||+|.|+...++|||.|+.      +|+.||||+|||++.
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            4689999999875     358999999999999999999999984      688999999999754

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-12  Score=106.06  Aligned_cols=61  Identities=25%  Similarity=0.358  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccccCCCEEEEeee---CCCCeeEEEECC--------eeeEecCCceeeccCCCCC
Q 018756          284 FLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECKG--------KAGWFPSANVEKRQRIPVS  344 (351)
Q Consensus       284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~---~d~gWweG~~~G--------k~G~FPsnYVe~i~~~p~s  344 (351)
                      ..|+|+|+|.+.+++||+|++||+|.|+++   .+.+||.|.+.|        +.||||+|||+.+......
T Consensus        22 ~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~~~   93 (106)
T d1i1ja_          22 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPG   93 (106)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSCC
T ss_pred             eEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccCcc
Confidence            469999999999999999999999999976   457899998644        5799999999988655433

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.29  E-value=1e-12  Score=104.84  Aligned_cols=53  Identities=23%  Similarity=0.401  Sum_probs=48.8

Q ss_pred             ceEEEEecCCCCCCCCC-------ccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCce
Q 018756          283 YFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANV  335 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~E-------Lsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnYV  335 (351)
                      .+.|+|+|||++..+++       |+|+.||+|.|++..+++||.|++   +|+.||||++|+
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            46799999999999888       999999999999999999999998   688999999874

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.1e-10  Score=96.78  Aligned_cols=177  Identities=15%  Similarity=0.205  Sum_probs=133.7

Q ss_pred             HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 018756           65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  144 (351)
Q Consensus        65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  144 (351)
                      +.|++.++.++....--......||+++..+|...+      .++.++..+|++++.|+...+.+...+...|. ||...
T Consensus        23 ~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~   95 (200)
T d1i4da_          23 ESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP------ELQEEFGYNAETQKLLCKNGETLLGAVNFFVS-SINTL   95 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            567777777777777777777788999888886533      57889999999999999999999988876655 55556


Q ss_pred             hhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 018756          145 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ  224 (351)
Q Consensus       145 ~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~q  224 (351)
                      +.+++. +.+..-..|++.+.+++.....+.+...+.+.. .+  ..+|..|++++++.+..+..++.++..-|..++..
T Consensus        96 ~~~~~~-~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~-~~--~~kl~~ae~~~~~a~~~fe~~~~~~~~~l~~l~~~  171 (200)
T d1i4da_          96 VTKTME-DTLMTVKQYEAARLEYDAYRTDLEELSLGPRDA-GT--RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEEN  171 (200)
T ss_dssp             HHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhhccccc-ch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555544 446777788888888888888876544332211 12  25899999999999999999999999999998885


Q ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018756          225 QHRLTFQRLVAMVEGEKNYHLRIAAILG  252 (351)
Q Consensus       225 qq~lt~~~L~~lveae~~yh~~~~~IL~  252 (351)
                      ....-..+|..|++++..||+++...|+
T Consensus       172 r~~~~~~~l~~~~~~~~~f~~~~~~~le  199 (200)
T d1i4da_         172 KIKVMHKQLLLFHNAVSAYFAGNQKQLE  199 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5555568899999999999999998875

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=2.1e-11  Score=103.57  Aligned_cols=54  Identities=17%  Similarity=0.346  Sum_probs=49.2

Q ss_pred             ceEEEEecCCCCCCCCC-------ccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCcee
Q 018756          283 YFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVE  336 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~E-------Lsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnYVe  336 (351)
                      .+.|+|+|||.+..+++       |+|++||+|.|++..+++||.|+.   +|..||||++|+.
T Consensus        23 ~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          23 AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             CEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             cEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            35799999999999987       999999999999999999999997   7999999998753

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.05  E-value=1.9e-08  Score=87.18  Aligned_cols=204  Identities=17%  Similarity=0.199  Sum_probs=134.9

Q ss_pred             ccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHH
Q 018756           35 DVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAI  114 (351)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~  114 (351)
                      +-. +||.=-...+.|..+=   ...++++++    +++++............+|+++..++...+     +..    -.
T Consensus         7 ~~T-~D~~fe~~~~~~~~~e---~~l~~l~k~----~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-----~~~----~~   69 (217)
T d1urua_           7 DRT-ADEIFDDHLNNFNRQQ---ASANRLQKE----FNNYIRCVRAAQAASKTLMDSVCEIYEPQW-----SGY----DA   69 (217)
T ss_dssp             TCC-HHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSCTTS-----TTH----HH
T ss_pred             CCc-ccHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----chH----HH
Confidence            444 3877655555555553   334444444    444444444445555678888888876655     122    24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 018756          115 YGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLH  194 (351)
Q Consensus       115 ~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~  194 (351)
                      +......++....++...+..+|++||+.+..-  ....+.+-...++.+.+++.....+.+...+.+.+ ..+  .++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~v~~pL~~~~~~--~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~-~~~--~~l~  144 (217)
T d1urua_          70 LQAQTGASESLWADFAHKLGDQVLIPLNTYTGQ--FPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKR-KDD--VKLT  144 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBT-TBC--CTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cch--hhhH
Confidence            466677788888999999999999999999862  23334444455566666666666665544443221 111  3555


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756          195 AAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  260 (351)
Q Consensus       195 ~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s  260 (351)
                      .|+.+++..+..+..++.++...|+.++......-.+.|.+|++++..||.++.+++.+|...+..
T Consensus       145 ~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~  210 (217)
T d1urua_         145 KGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDK  210 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777777777777777788889888774444445779999999999999999999999887654

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5e-08  Score=88.38  Aligned_cols=182  Identities=9%  Similarity=0.068  Sum_probs=124.6

Q ss_pred             HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756           67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  145 (351)
Q Consensus        67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  145 (351)
                      +++++..++..+.-..-..+.+++.+..++..... +.++..++.|+..||++++.|...+..|...+...+++||..++
T Consensus        35 l~k~~~~~~~~~~~~~~~~~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~  114 (268)
T d2elba1          35 LYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFK  114 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444433333344566666777765431 23456789999999999999999999999999999999999999


Q ss_pred             hcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 018756          146 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ  225 (351)
Q Consensus       146 ~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qq  225 (351)
                      .+|++.. +.+-..|++.+.++++......+.. |.+.   ++  .....|+..+...+..+....-+....|..++...
T Consensus       115 ~~di~~~-ke~kk~fek~~~~yd~~l~k~~~~~-k~k~---~~--~~~~Ea~~~l~~~r~~f~~~~~d~~~~l~~l~~~k  187 (268)
T d2elba1         115 ERDLKEI-LTLKEVFQIASNDHDAAINRYSRLS-KKRE---ND--KVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKK  187 (268)
T ss_dssp             TTHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCC-CC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhc-ccCC---cc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998765 5667788888888888777664322 2222   11  22334666677777776666666777777777644


Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHH-HHhH
Q 018756          226 HRLTFQRLVAMVEGEKNYHLRIAAIL-GDVE  255 (351)
Q Consensus       226 q~lt~~~L~~lveae~~yh~~~~~IL-~~L~  255 (351)
                      ...-+..|+.+++++..|++++.+++ +.+.
T Consensus       188 ~~~~l~~l~~~~~a~~~ff~~~~~~l~~~l~  218 (268)
T d2elba1         188 KIALLEPLLGYMQAQISFFKMGSENLNEQLE  218 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44447889999999999998887765 3344

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1e-09  Score=92.30  Aligned_cols=53  Identities=15%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             ceEEEEecCCCCCCCCC-------ccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecCCce
Q 018756          283 YFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANV  335 (351)
Q Consensus       283 ~~~~~ALydf~a~~~~E-------Lsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPsnYV  335 (351)
                      .+.++|+|+|++..+++       |+|+.||+|.|++..+++||.|+.   +|..||||++|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            36699999999988777       899999999999999999999996   578899999884

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.93  Score=38.55  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=37.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756          105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  146 (351)
Q Consensus       105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  146 (351)
                      .+.+..+...+-.....++.....+...|..++++||..+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~a~~h~~~a~~l~~~i~~~l~~~~~  107 (288)
T d2efla1          66 KYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQ  107 (288)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778888888888999999999999999999999999876

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=1.3  Score=37.37  Aligned_cols=42  Identities=12%  Similarity=-0.073  Sum_probs=37.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 018756          106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG  147 (351)
Q Consensus       106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~  147 (351)
                      +.+..|...+-+....+++....+...+..++++||..++..
T Consensus        58 ~s~~~~~~~~~~~~~~~a~~~~~~~~~l~~~i~~~l~~~~~~   99 (279)
T d2efka1          58 FSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQE   99 (279)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457778888888889999999999999999999999999864

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.045  Score=40.48  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=35.6

Q ss_pred             CCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCce
Q 018756          296 SEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANV  335 (351)
Q Consensus       296 ~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYV  335 (351)
                      ...+|.+++|+.|.|+...++|-|.++. .|+.||+|.+++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            3458999999999999999999999985 899999998775