Citrus Sinensis ID: 018763

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSNSSSNIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHccccccHcHHHHHccHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHcHccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQrmntplnrdAKSCLERWKNylkpgikkgsltDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQReqkdsirivdpidehkYDQILETFAEKLVNNHSFVmatsnggflhtdpatppnllppwlsnsssnirppspsvtlslspstvaaappipwlqpergsdntlvlgnmpthgsvpicgenLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEqmgcrprlsesngr
Flexible Loop (DISEMBL)
mkerqrwraeedALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLqakhgnkwkKIAAEVPGRTAKRLGKWWEVFkekqqreqkdsirivdpiDEHKYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSNSSSNIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLrrvelqlesekacrrreKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKfleqmgcrprlsesngr
Low Complexity Region (SEG)
MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATppnllppwlsnsssnirppspsvtlslspstvAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACrrrekmeeieakmkaLRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR
Disordered region (IsUnstruct)
************ALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE********SIRIVDPIDEHKYDQILETFAEKLVNNHSFVMATSNGGFLH******************************************************TLVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVEL***************************************************************KHLRLTKFL***************
Disordered Region (DISOPRED)
**ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE*********************************************************************************************************************************ECCRELEEGHRAWAAHKKEAAWRLRR******************EIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQM************
Disordered Region (DISEMBL)
*********EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSNSS******************VAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCR*********
Disordered Region (DISPRO)
*****RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDE*******************************************************************VAAAPPIPW**P***SDNTLVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCR*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSNSSSNIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
O80931	367	Transcription factor AS1	yes	no	0.96	0.915	0.698	1e-132
Q94IB1	342	Protein rough sheath 2 ho	yes	no	0.88	0.900	0.626	1e-103
Q9S7B2	370	Protein rough sheath 2 OS	N/A	no	0.954	0.902	0.578	2e-91
A2WW87	553	Transcription factor GAMY	N/A	no	0.288	0.182	0.446	2e-19
Q0JIC2	553	Transcription factor GAMY	no	no	0.288	0.182	0.446	2e-19
Q4JL84	235	Transcription factor MYB5	no	no	0.297	0.442	0.433	4e-19
Q9LX82	256	Transcription factor MYB4	no	no	0.297	0.406	0.424	4e-19
Q9SM27	382	Transcription factor MYB1	no	no	0.271	0.248	0.453	5e-19
P81392	316	Myb-related protein 306 O	N/A	no	0.282	0.313	0.425	5e-19
Q9LTF7	201	Transcription factor MYB8	no	no	0.294	0.512	0.409	3e-18

>sp|O80931|AS1_ARATH Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1

 Score =  470 bits (1210), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/368 (69%), Positives = 297/368 (80%), Gaps = 32/368 (8%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRW  EEDALLRAYV+Q+GP+EW  VS+RMN PLNRDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MKERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQ KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE+K+S + V+P
Sbjct: 61  SLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKRVEP 120

Query: 121 IDEHKYDQILETFAEKLVNNHS-----------FVMATSNGGFLHTD-PATPPN-LLPPW 167
           IDE KYD+ILE+FAEKLV   S            VMA SNGGFLH++    PPN ++PPW
Sbjct: 121 IDESKYDRILESFAEKLVKERSNVVPAAAAAATVVMANSNGGFLHSEQQVQPPNPVIPPW 180

Query: 168 L--SNSSSNIRPPSPSVTLSLSPSTV---AAAPPIPWL---QPERGSD--NTLVLGNMPT 217
           L  SN+ +N+    PSVTL+LSPSTV   A  PPIPWL   QPER  +    LVLG+M  
Sbjct: 181 LATSNNGNNVVARPPSVTLTLSPSTVAAAAPQPPIPWLQQQQPERAENGPGGLVLGSM-- 238

Query: 218 HGSVPIC---GENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRR 274
              +P C    E++ +SEL+ECCRELEEGHRAWA HKKEAAWRLRR+ELQLESEK CR+R
Sbjct: 239 ---MPSCSGSSESVFLSELVECCRELEEGHRAWADHKKEAAWRLRRLELQLESEKTCRQR 295

Query: 275 EKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKF 334
           EKMEEIEAKMKALR+EQ+  +++IE EYREQ+ GLRRDAEAK+QKLA+QW+++H+RLTKF
Sbjct: 296 EKMEEIEAKMKALREEQKNAMEKIEGEYREQLVGLRRDAEAKDQKLADQWTSRHIRLTKF 355

Query: 335 LE-QMGCR 341
           LE QMGCR
Sbjct: 356 LEQQMGCR 363

Transcription factor required for normal cell differentiation. Positively regulates LATERAL ORGAN BOUNDARIES (LOB) within the shoot apex, and the class III HD-ZIP genes REV, PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 2 (LBD6/AS2) to repress the knox homeobox genes BP/KNAT1, KNAT2, and KNAT6 and the abaxial determinants ARF3/ETT, KAN2 and YAB5. May act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA silencing pathway, to regulate the leaf morphogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94IB1|RS2_ORYSJ Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/351 (62%), Positives = 259/351 (73%), Gaps = 43/351 (12%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           M+ERQRWR EEDA+L AYV+QYGP+EWS VSQRMN PL+RDAKSCLERWKNYL+PGIKKG
Sbjct: 6   MRERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKG 65

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLTD+EQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE +D  R   P
Sbjct: 66  SLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDRDRRRLP 125

Query: 121 I----DEH-----KYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSNS 171
                DE      +YD +LE FA+KLVN+H   M            A P  +LPPW+S+S
Sbjct: 126 PPLDGDERGCAGGRYDWLLEDFADKLVNDHHRRMM-----------AAP--ILPPWMSSS 172

Query: 172 SSNIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVS 231
            S+    SPSVTLSL+ + VA A                     P        G  ++V+
Sbjct: 173 PSSS--SSPSVTLSLASAAVAPA------------------PAAPPPTWGGGGGGEVVVA 212

Query: 232 ELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQ 291
           ELMECCRE+EEG RAWAAH+KEAAWR++RVE+QLE+E+ACRRRE  EE EAKM+ALR+EQ
Sbjct: 213 ELMECCREMEEGQRAWAAHRKEAAWRMKRVEMQLETERACRRREATEEFEAKMRALREEQ 272

Query: 292 RATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQM-GCR 341
            A ++R+EAEYRE++AGLRRDAEAKEQK+AEQW+AKH RL KFL+Q+  CR
Sbjct: 273 AAAVERVEAEYREKMAGLRRDAEAKEQKMAEQWAAKHARLAKFLDQVAACR 323

Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S7B2|RS2_MAIZE Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1

 Score =  336 bits (861), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 209/361 (57%), Positives = 249/361 (68%), Gaps = 27/361 (7%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRWR EEDA+LRAYV+QYGP+EW  VSQRMN  L+RDAKSCLERWKNYL+PGIKKG
Sbjct: 1   MKERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE +DS R    
Sbjct: 61  SLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDSRRPPPE 120

Query: 121 IDEH---KYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSNS------ 171
                  +Y+ +LE FAEKLV       A +    L   P     +LPPWLS++      
Sbjct: 121 PSPDERGRYEWLLENFAEKLVGERPQQAAAAPSPLLMAAP-----VLPPWLSSNAGPAAA 175

Query: 172 ------SSNIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLVLGNMPT---HGSVP 222
                     RPPSPSVTLSL+ + VA  PP P       +         P+   HG   
Sbjct: 176 AAAAVAHPPPRPPSPSVTLSLASAAVAPGPPAPAPWMPDRAAADAAPYGFPSPSQHGGAA 235

Query: 223 ICGENLL----VSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKME 278
             G  ++    ++EL ECCRELEEG RAWAAH++EAAWRL+RVE QLE E+  RRRE  E
Sbjct: 236 PPGMAVVDGQALAELAECCRELEEGRRAWAAHRREAAWRLKRVEQQLEMEREMRRREVWE 295

Query: 279 EIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQM 338
           E EAKM+ +R EQ A  +R+E ++RE++A LRRDA+ KE+K+AEQW+AKH R+ KF+EQM
Sbjct: 296 EFEAKMRTMRLEQAAAAERVERDHREKVAELRRDAQVKEEKMAEQWAAKHARVAKFVEQM 355

Query: 339 G 339
           G
Sbjct: 356 G 356

Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes.

Zea mays (taxid: 4577)

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE
Sbjct: 45  WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEE 102

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109
           + L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct: 103 ERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE
Sbjct: 45  WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEE 102

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109
           + L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct: 103 ERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4JL84|MYB59_ARATH Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W  +ED LL  +V  +G + W FV++   + LNR  KSC  RW NYL PG+K+G +T +E
Sbjct: 13  WTEQEDILLVNFVHLFGDRRWDFVAKV--SGLNRTGKSCRLRWVNYLHPGLKRGKMTPQE 70

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 112
           + LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct: 71  ERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 116

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX82|MYB48_ARATH Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W  +ED LL  +V  +G + W F+++   + LNR  KSC  RW NYL PG+K+G +T +E
Sbjct: 12  WTEQEDILLVNFVHLFGDRRWDFIAKV--SGLNRTGKSCRLRWVNYLHPGLKRGKMTPQE 69

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 112
           + LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct: 70  ERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 115

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SM27|MY104_ARATH Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=3

 Score = 95.9 bits (237), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 4   RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
           + +W+ EED +L+ YV QYG + W+ V +R   P N    SC  RW N+LKP +KKG  T
Sbjct: 18  KSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHN--PASCRFRWMNHLKPSLKKGPFT 75

Query: 64  DEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100
           DEE+  V+ L A  GNKW ++A E PGRT   +  +W
Sbjct: 76  DEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFW 112

Arabidopsis thaliana (taxid: 3702)

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W  EED +L +Y++++GP  W  +    NT L R +KSC  RW NYL+PGIK+G  T+ E
Sbjct: 17  WTPEEDIILVSYIQEHGPGNWRAIPS--NTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHE 74

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107
           + ++IHLQA  GN+W  IA+ +P RT   +  +W    +K+
Sbjct: 75  EKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKK 115

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9LTF7|MYB82_ARATH Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 3   ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSL 62
           +R  W+ EED +L++YV+ +G   W+ +S+R  + L R  KSC  RWKNYL+P IK+GS+
Sbjct: 13  KRGLWKPEEDMILKSYVETHGEGNWADISRR--SGLKRGGKSCRLRWKNYLRPNIKRGSM 70

Query: 63  TDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107
           + +EQ L+I +    GN+W  IA  +PGRT   +  +W     K+
Sbjct: 71  SPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224090689	369	predicted protein [Populus trichocarpa]	1.0	0.948	0.791	1e-163
71041106	353	MYB91 [Malus x domestica]	0.994	0.985	0.805	1e-162
262410511	357	myb family transcription factor [Castane	1.0	0.980	0.812	1e-160
225440368	358	PREDICTED: transcription factor AS1 [Vit	1.0	0.977	0.810	1e-160
302398955	353	MYB domain class transcription factor [M	0.994	0.985	0.797	1e-158
255585187	349	asymmetric leaves1 and rough sheath, put	0.974	0.977	0.801	1e-157
344176312	361	phantastica [Nicotiana benthamiana]	0.997	0.966	0.779	1e-153
45504723	363	phantastica [Nicotiana tabacum]	0.997	0.961	0.781	1e-153
9972157	359	MYB-related transcription factor PHAN1 [	0.994	0.969	0.773	1e-152
168831388	358	phantastica [Corytoplectus speciosus]	1.0	0.977	0.756	1e-151

>gi|224090689|ref|XP_002309060.1| predicted protein [Populus trichocarpa] gi|222855036|gb|EEE92583.1| predicted protein [Populus trichocarpa]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/369 (79%), Positives = 325/369 (88%), Gaps = 19/369 (5%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRWRAEEDALLRAYVKQYGP+EW+ VSQRMNTPLNRDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE K++ + V+P
Sbjct: 61  SLTEEEQSLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELKENNKTVEP 120

Query: 121 IDEHKYDQILETFAEKLVNNH---SFVMATSNGGFL------------HTDPATP-PNLL 164
           IDE KYD+ILETFAEKLV      +FVMATSNG FL            H  P+TP P +L
Sbjct: 121 IDEGKYDRILETFAEKLVKERPSPAFVMATSNGTFLHPDPHPHPHPPPHPHPSTPAPTML 180

Query: 165 PPWL--SNSSSNIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNT-LVLGNMPTHGSV 221
           PPWL  SNS+S +RPPSPSVTLSLSPSTVAA+PPIPWLQPERG +NT LVLGN+P HG V
Sbjct: 181 PPWLSNSNSTSTVRPPSPSVTLSLSPSTVAASPPIPWLQPERGPENTPLVLGNLPPHGIV 240

Query: 222 PICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIE 281
           P+CGE+ L+SEL++CCRELEEG RAWAAHKKEAAWRLRRVELQLESEK+CRRREKMEEIE
Sbjct: 241 PVCGESFLMSELVDCCRELEEGRRAWAAHKKEAAWRLRRVELQLESEKSCRRREKMEEIE 300

Query: 282 AKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCR 341
           +K+K+LR+E++A+LDRIEAEYREQ+ GLRRDAE KEQKL++QW+AKHLRLTKFLEQM CR
Sbjct: 301 SKIKSLREEEKASLDRIEAEYREQLTGLRRDAETKEQKLSDQWTAKHLRLTKFLEQMSCR 360

Query: 342 PRLSESNGR 350
           PRLSE N R
Sbjct: 361 PRLSEPNSR 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041106|gb|AAZ20441.1| MYB91 [Malus x domestica]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 319/355 (89%), Gaps = 7/355 (1%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRW AEEDALLRAYVKQYGP+EW+ VSQRMNTPL+RDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MKERQRWSAEEDALLRAYVKQYGPREWNLVSQRMNTPLDRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK+  +I DP
Sbjct: 61  SLTEEEQRLVICLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKNK-KITDP 119

Query: 121 IDEHKYDQILETFAEKLVNNH--SFVMATSNGGFLHTDPATP-PNLLPPWLSNS--SSNI 175
           I E KYD ILETFAEKLV     +++MATSNG +LHT+ ++P P +LPPWLSNS  S N+
Sbjct: 120 IVEGKYDTILETFAEKLVKERAPTYLMATSNGAYLHTETSSPAPTILPPWLSNSNVSPNV 179

Query: 176 RPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVSELME 235
           RPPSPSVTLSLSP TVA +PPIPWLQ +RGSD + V+GN+P HG VP CGENL++SEL+E
Sbjct: 180 RPPSPSVTLSLSP-TVAPSPPIPWLQQDRGSDGSFVVGNLPHHGVVPACGENLVISELVE 238

Query: 236 CCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATL 295
           C RELEE HRAWAAHKKEA+WRLRRVELQL+SEKACRRREKMEEIEAK+KALR+EQ+A L
Sbjct: 239 CSRELEEMHRAWAAHKKEASWRLRRVELQLDSEKACRRREKMEEIEAKVKALREEQKAAL 298

Query: 296 DRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350
           DRIEAEYREQ+AGLRRDAEAKEQKLAEQW+AKHLRL++FLEQMG RPR+ E NGR
Sbjct: 299 DRIEAEYREQLAGLRRDAEAKEQKLAEQWAAKHLRLSQFLEQMGGRPRIVEPNGR 353

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262410511|gb|ACY66803.1| myb family transcription factor [Castanea mollissima]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/357 (81%), Positives = 321/357 (89%), Gaps = 7/357 (1%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRWR+EEDALLRAYVKQYGP+EW+ VSQRMNT LNRDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MKERQRWRSEEDALLRAYVKQYGPREWNLVSQRMNTTLNRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK++ + V P
Sbjct: 61  SLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKENNKTVAP 120

Query: 121 IDEHKYDQILETFAEKLVNNH---SFVMATSNGGFLHTD-PATPPNLLPPWLSNS--SSN 174
           I++ KYD+ILETFAEKLV      +++MATSNGGFLH+D P   P LLPPWLSNS  +S 
Sbjct: 121 IEDGKYDRILETFAEKLVKERKAPAYLMATSNGGFLHSDPPGPAPALLPPWLSNSNGTST 180

Query: 175 IRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNT-LVLGNMPTHGSVPICGENLLVSEL 233
           +RPPSPSVTLSLSPSTVAA PPIPWLQP+RG DN  LV GN+   GSVP CGE++L+SEL
Sbjct: 181 VRPPSPSVTLSLSPSTVAAPPPIPWLQPDRGPDNNPLVFGNLQPQGSVPGCGESMLISEL 240

Query: 234 MECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRA 293
           +ECCR+LEEGH AWAAHKKEAAWRL+RVELQLESEKACRRREKMEEIEAK+KALR+EQ+ 
Sbjct: 241 VECCRDLEEGHHAWAAHKKEAAWRLKRVELQLESEKACRRREKMEEIEAKVKALREEQKV 300

Query: 294 TLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350
            LDRIEAEYREQ+ GLRRDAEAKEQKLAEQW++KHLRL+KFLEQMGCRPRLSE NGR
Sbjct: 301 ALDRIEAEYREQLVGLRRDAEAKEQKLAEQWTSKHLRLSKFLEQMGCRPRLSEPNGR 357

Source: Castanea mollissima

Species: Castanea mollissima

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440368|ref|XP_002266427.1| PREDICTED: transcription factor AS1 [Vitis vinifera]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/358 (81%), Positives = 319/358 (89%), Gaps = 8/358 (2%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRWRAEEDALLRAYV+QYGP+EW+ VSQRMNTPL RDAKSCLERWKNYL+PGIKKG
Sbjct: 1   MKERQRWRAEEDALLRAYVRQYGPREWNLVSQRMNTPLGRDAKSCLERWKNYLRPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK++ ++VDP
Sbjct: 61  SLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKENNKVVDP 120

Query: 121 IDEHKYDQILETFAEKLVNNH---SFVMATSNGGFLHTDPATPPNLLPPWL----SNSSS 173
           I+E KYD+ILETFAEKLV      +F+MATSNG FLH DP  PP           SN +S
Sbjct: 121 IEEGKYDRILETFAEKLVKERPAPAFLMATSNGNFLHPDPPAPPPPTLLPPWLSNSNCTS 180

Query: 174 NIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNT-LVLGNMPTHGSVPICGENLLVSE 232
            +RPPSPSVTLSL PSTVA +P IPWLQPERG D T LVLGN+P HG+VP  GENLL+SE
Sbjct: 181 TVRPPSPSVTLSLCPSTVATSPTIPWLQPERGPDATPLVLGNLPPHGAVPTSGENLLISE 240

Query: 233 LMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQR 292
           L+ECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIE+K+KALR+EQ+
Sbjct: 241 LVECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIESKVKALREEQK 300

Query: 293 ATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350
           ATLDRIEAEYREQ+AGLRRDAE+KEQKLAEQWSAKHLRLT+F+EQMGCRPRL+E NGR
Sbjct: 301 ATLDRIEAEYREQLAGLRRDAESKEQKLAEQWSAKHLRLTRFIEQMGCRPRLAEPNGR 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398955|gb|ADL36772.1| MYB domain class transcription factor [Malus x domestica]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/355 (79%), Positives = 316/355 (89%), Gaps = 7/355 (1%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRW AEEDALLRAYVKQYGP+EW+ VSQRMNTPL+RDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MKERQRWSAEEDALLRAYVKQYGPREWNLVSQRMNTPLDRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK  RE K + +I DP
Sbjct: 61  SLTEEEQRLVICLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKPPREPK-TRKIPDP 119

Query: 121 IDEHKYDQILETFAEKLVNNH--SFVMATSNGGFLHTDPATP-PNLLPPWLSNS--SSNI 175
           I E KYD ILETFAEKLV     +++MATSNG +LHT+ ++P P +LPPWLSNS  S N+
Sbjct: 120 IVEGKYDTILETFAEKLVKERAPTYLMATSNGAYLHTETSSPAPTILPPWLSNSNVSPNV 179

Query: 176 RPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLVLGNMPTHGSVPICGENLLVSELME 235
           RPPSPSVTLSLSP TVA +PPIPWLQ +RGSD + V+GN+P HG VP CGENL++SEL+E
Sbjct: 180 RPPSPSVTLSLSP-TVAPSPPIPWLQQDRGSDGSFVVGNLPHHGVVPACGENLVISELVE 238

Query: 236 CCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATL 295
           C RELEE HRAWAAHKKEA+WRLRRVELQL+SEKACRRREKMEEIEAK+KALR+EQ+A L
Sbjct: 239 CSRELEEMHRAWAAHKKEASWRLRRVELQLDSEKACRRREKMEEIEAKVKALREEQKAAL 298

Query: 296 DRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350
           DRIEAEYREQ+AGLRRDAEAKEQKLAEQW+AKHLRL++FLEQMG RPR+ E NGR
Sbjct: 299 DRIEAEYREQLAGLRRDAEAKEQKLAEQWAAKHLRLSQFLEQMGGRPRIVEPNGR 353

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585187|ref|XP_002533297.1| asymmetric leaves1 and rough sheath, putative [Ricinus communis] gi|223526881|gb|EEF29091.1| asymmetric leaves1 and rough sheath, putative [Ricinus communis]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/348 (80%), Positives = 312/348 (89%), Gaps = 7/348 (2%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MKERQRWRAEEDALLRAYVKQYGP+EW+ VSQRMNTPLNRDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK++ + V+P
Sbjct: 61  SLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKENNKTVEP 120

Query: 121 IDEHKYDQILETFAEKLVNNH---SFVMATSNGGFLHTDPATPPNL-LPPWLSNSS--SN 174
           I+E KYD+ILETFAEKLV      +FVMATSNGGFLHTDP  P    LPPWLS SS  S 
Sbjct: 121 IEEGKYDRILETFAEKLVKERPAPAFVMATSNGGFLHTDPPAPAQTSLPPWLSTSSSISA 180

Query: 175 IRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNT-LVLGNMPTHGSVPICGENLLVSEL 233
           +RPPSPSVTLSLS S VAA PPIPWLQ E   DNT LVL ++P HGSVP CGENL+VSEL
Sbjct: 181 VRPPSPSVTLSLSSSAVAAPPPIPWLQTEGLLDNTPLVLSSLPPHGSVPSCGENLVVSEL 240

Query: 234 MECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRA 293
           ++CCR+LEEG+RAWAAHKKEAAWRLRRV+LQLESEK+CR+REKMEEIE+K+KALR+E++A
Sbjct: 241 VDCCRQLEEGYRAWAAHKKEAAWRLRRVQLQLESEKSCRKREKMEEIESKIKALREEEKA 300

Query: 294 TLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCR 341
           +LDRIEAEYREQ+A LRRDAEAKEQKLAEQW++K LRL+KFLEQ+G +
Sbjct: 301 SLDRIEAEYREQLAELRRDAEAKEQKLAEQWASKQLRLSKFLEQIGVQ 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344176312|emb|CCC21110.1| phantastica [Nicotiana benthamiana]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/359 (77%), Positives = 311/359 (86%), Gaps = 10/359 (2%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           M+ERQRWR+EEDALLRAYVKQ+GPKEW  VSQRMNTPLNRDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MRERQRWRSEEDALLRAYVKQFGPKEWHLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQ LVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK++ ++VDP
Sbjct: 61  SLTEEEQRLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKENNKVVDP 120

Query: 121 IDEHKYDQILETFAEKLVNNHS---FVMATSNGGFLHTD--PATPPNLLPPWLSNS--SS 173
           +DE KYD ILETFAEK+V   S    +MATSNGGFLHTD  P +P  LLPPWLSNS  +S
Sbjct: 121 VDEGKYDHILETFAEKIVKERSVPGLLMATSNGGFLHTDAPPPSPQTLLPPWLSNSTATS 180

Query: 174 NIRPPSPSVTLSLSPSTVAAAPP--IPWLQPERGSDNT-LVLGNMPTHGSVPICGENLLV 230
            +R PSPSVTLSLSPSTV   P   IPWLQ +RG +N  L+L + P HG  P CGEN  +
Sbjct: 181 TVRSPSPSVTLSLSPSTVPPTPTPGIPWLQTDRGPENAPLILSSFPHHGVAPPCGENPFI 240

Query: 231 SELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDE 290
           +EL ECC+EL+EGHRAWAAHKKEAAWRLRRVELQLESEK  + REKMEEIEAKMKALR+E
Sbjct: 241 TELAECCKELDEGHRAWAAHKKEAAWRLRRVELQLESEKTNKVREKMEEIEAKMKALREE 300

Query: 291 QRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNG 349
           Q+ATLDR EAEY+EQ+AGLRRDAEAKEQKLAEQW++KHLRL KFLEQMGC+ RL+E NG
Sbjct: 301 QKATLDRFEAEYKEQLAGLRRDAEAKEQKLAEQWASKHLRLIKFLEQMGCQSRLAEPNG 359

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45504723|gb|AAS66905.1| phantastica [Nicotiana tabacum]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/361 (78%), Positives = 312/361 (86%), Gaps = 12/361 (3%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           M+ERQRWR+EEDALLRAYVKQYGPKEW  VSQRMNT LNRDAKSCLERWKNYLKPGIKKG
Sbjct: 1   MRERQRWRSEEDALLRAYVKQYGPKEWHLVSQRMNTALNRDAKSCLERWKNYLKPGIKKG 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT EEQ LVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ REQK++ ++VDP
Sbjct: 61  SLTQEEQRLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQHREQKENNKVVDP 120

Query: 121 IDEHKYDQILETFAEKLVNNHS---FVMATSNGGFLHTD-PA-TPPNLLPPWLSNS--SS 173
           +DE KYD ILETFAEK+V   S    +MATSNGGFLH D PA +P  LLPPWLSNS  +S
Sbjct: 121 VDEGKYDHILETFAEKIVKERSVPGLLMATSNGGFLHADAPAPSPQTLLPPWLSNSTATS 180

Query: 174 NIRPPSPSVTLSLSPSTVAAAPP----IPWLQPERGSDNT-LVLGNMPTHGSVPICGENL 228
            +R PSPSVTLSLSPSTV   P     IPWLQ +RG +N  L+L + P HG  P CGEN 
Sbjct: 181 TVRSPSPSVTLSLSPSTVPPTPTPTPGIPWLQTDRGPENAPLILSSFPHHGVAPPCGENP 240

Query: 229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALR 288
            V+EL+ECC+EL+EGHRAWAAHKKEAAWRLRRVELQLESEK C+ REKMEEIEAKMKALR
Sbjct: 241 FVTELVECCKELDEGHRAWAAHKKEAAWRLRRVELQLESEKICKVREKMEEIEAKMKALR 300

Query: 289 DEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESN 348
           +EQ+ATLDRIEAEY+EQ+AGLRRDAEAKEQKLAEQW++KHLRL+KFLEQMGC+ RL+E N
Sbjct: 301 EEQKATLDRIEAEYKEQLAGLRRDAEAKEQKLAEQWASKHLRLSKFLEQMGCQSRLAEPN 360

Query: 349 G 349
           G
Sbjct: 361 G 361

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9972157|gb|AAG10600.1|AF299140_1 MYB-related transcription factor PHAN1 [Pisum sativum]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/357 (77%), Positives = 305/357 (85%), Gaps = 9/357 (2%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           MK+RQRWRAEEDALLRAYVKQYGP+EW+ VSQRMNTPLNRDAKSCLERWKNYLKPGIKKG
Sbjct: 5   MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 64

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQHLVI LQA HGNKWKKIAA+VPGRTAKRLGKWWEVFKEKQQRE K   + VDP
Sbjct: 65  SLTEEEQHLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGINKTVDP 124

Query: 121 IDEHKYDQILETFAEKLVNNH---SFVMATSNGGFLHTDP-ATPPNLLPPWLSNSSSN-- 174
           I++ KY+ ILE+FAEKLV      SFVMA SN  +LHTD  A  P LLP WLSNS++   
Sbjct: 125 INDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAQAATPGLLPSWLSNSNNTAP 184

Query: 175 IRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNT-LVLGNMPTHGSVPICGENLLVSEL 233
           +RP SPSVTLSLSPSTVAA P  PW+QP RG DN  LVLGN+  HG+V   GEN+++SEL
Sbjct: 185 VRPNSPSVTLSLSPSTVAAPP--PWMQPVRGPDNAPLVLGNVAPHGAVLSYGENMVMSEL 242

Query: 234 MECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRA 293
           ++CC+ELEEGH A AAHKKEAAWRL RVELQLESEKA RRREKMEEIEAK+KALR+EQ  
Sbjct: 243 IDCCKELEEGHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALREEQAV 302

Query: 294 TLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350
            LDRIE EYREQ+AGLRRDAEAKEQKLAEQW+AKHLRLTKFLEQ+GCR R +E NGR
Sbjct: 303 ALDRIEGEYREQLAGLRRDAEAKEQKLAEQWAAKHLRLTKFLEQVGCRSRHAEQNGR 359

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168831388|gb|ACA34975.1| phantastica [Corytoplectus speciosus]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/358 (75%), Positives = 307/358 (85%), Gaps = 8/358 (2%)

Query: 1   MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
           M+ERQRWR EEDALLRAYVKQYGP++W  VS+RMN PLNRDAKSCLERWKNYLKPGIKK 
Sbjct: 1   MRERQRWRPEEDALLRAYVKQYGPRDWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKE 60

Query: 61  SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
           SLT+EEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK++ +I++P
Sbjct: 61  SLTEEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKENNKILEP 120

Query: 121 IDEHKYDQILETFAEKLVNNHS---FVMATSNGGFLHTDPATP--PNLLPPWLSNSS--S 173
           I+E KYD+ILETFAEKLV   +     MATSNGGFLHTDP  P  P++LPPWL  SS  +
Sbjct: 121 IEEGKYDRILETFAEKLVKERTAPGIAMATSNGGFLHTDPPAPSAPSVLPPWLVGSSMAT 180

Query: 174 NIRPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDNTLV-LGNMPTHGSVPICGENLLVSE 232
            +RPPSPSVTLSLSPSTV  AP IPWLQP+R  D T   L ++P+ G  P+ GEN LV E
Sbjct: 181 TVRPPSPSVTLSLSPSTVTPAPAIPWLQPDRLPDITPPGLSSLPSLGIAPLGGENPLVLE 240

Query: 233 LMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQR 292
           L+ECCRELEEGH AW AHKKEAAWRL+RVELQL+SEK+CRRREKME+IEAK+KALR+EQ+
Sbjct: 241 LVECCRELEEGHPAWVAHKKEAAWRLKRVELQLDSEKSCRRREKMEDIEAKVKALREEQK 300

Query: 293 ATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350
            +LDRIEAEYREQ+AGLRR+AE KEQKLAEQW+ KH RLT FL+QMGCR   +E NGR
Sbjct: 301 TSLDRIEAEYREQLAGLRREAEVKEQKLAEQWATKHSRLTNFLKQMGCRSIGTEPNGR 358

Source: Corytoplectus speciosus

Species: Corytoplectus speciosus

Genus: Corytoplectus

Family: Gesneriaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
UNIPROTKB|Q9S7B2	370	RS2 "Protein rough sheath 2" [	0.448	0.424	0.718	6.2e-91
TAIR|locus:2040671	367	AS1 "ASYMMETRIC LEAVES 1" [Ara	0.445	0.425	0.760	6.7e-65
TAIR|locus:2039478	382	MYB104 "myb domain protein 104	0.271	0.248	0.453	2.4e-22
TAIR|locus:2174324	235	MYB59 "myb domain protein 59"	0.297	0.442	0.433	7e-22
TAIR|locus:2075236	256	MYB48 "myb domain protein 48"	0.297	0.406	0.424	9e-22
TAIR|locus:2090764	323	MYB30 "myb domain protein 30"	0.317	0.343	0.412	3.9e-21
TAIR|locus:2079182	333	MYB94 "myb domain protein 94"	0.302	0.318	0.407	3.9e-21
TAIR|locus:2032975	283	MYB116 "myb domain protein 116	0.357	0.441	0.373	4.9e-21
TAIR|locus:2059329	427	MYB81 "myb domain protein 81"	0.288	0.236	0.427	7.9e-21
TAIR|locus:2025565	280	MYB60 "myb domain protein 60"	0.3	0.375	0.435	8e-21

UNIPROTKB|Q9S7B2 RS2 "Protein rough sheath 2" [Zea mays (taxid:4577)]

 Score = 580 (209.2 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 115/160 (71%), Positives = 127/160 (79%)

Query:     1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
             MKERQRWR EEDA+LRAYV+QYGP+EW  VSQRMN  L+RDAKSCLERWKNYL+PGIKKG
Sbjct:     1 MKERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKG 60

Query:    61 SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIV-D 119
             SLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE +DS R   +
Sbjct:    61 SLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDSRRPPPE 120

Query:   120 PI-DEH-KYDQILETFAEKLVNNHSFVMATSNGGFLHTDP 157
             P  DE  +Y+ +LE FAEKLV       A +    L   P
Sbjct:   121 PSPDERGRYEWLLENFAEKLVGERPQQAAAAPSPLLMAAP 160

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2040671 AS1 "ASYMMETRIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 127/167 (76%), Positives = 140/167 (83%)

Query:     1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60
             MKERQRW  EEDALLRAYV+Q+GP+EW  VS+RMN PLNRDAKSCLERWKNYLKPGIKKG
Sbjct:     1 MKERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKG 60

Query:    61 SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120
             SLT+EEQ LVI LQ KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE+K+S + V+P
Sbjct:    61 SLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKRVEP 120

Query:   121 IDEHKYDQILETFAEKLVNNHS-----------FVMATSNGGFLHTD 156
             IDE KYD+ILE+FAEKLV   S            VMA SNGGFLH++
Sbjct:   121 IDESKYDRILESFAEKLVKERSNVVPAAAAAATVVMANSNGGFLHSE 167

GO:0003677 "DNA binding" evidence=IEA;ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA;IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010338 "leaf formation" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045088 "regulation of innate immune response" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0000793 "condensed chromosome" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0009615 "response to virus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2039478 MYB104 "myb domain protein 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
 Identities = 44/97 (45%), Positives = 60/97 (61%)

Query:     4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
             + +W+ EED +L+ YV QYG + W+ V +R   P N    SC  RW N+LKP +KKG  T
Sbjct:    18 KSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHN--PASCRFRWMNHLKPSLKKGPFT 75

Query:    64 DEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100
             DEE+  V+ L A  GNKW ++A E PGRT   +  +W
Sbjct:    76 DEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFW 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0001708 "cell fate specification" evidence=RCA

TAIR|locus:2174324 MYB59 "myb domain protein 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 46/106 (43%), Positives = 66/106 (62%)

Query:     7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
             W  +ED LL  +V  +G + W FV++     LNR  KSC  RW NYL PG+K+G +T +E
Sbjct:    13 WTEQEDILLVNFVHLFGDRRWDFVAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQE 70

Query:    67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 112
             + LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:    71 ERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2075236 MYB48 "myb domain protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 45/106 (42%), Positives = 66/106 (62%)

Query:     7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
             W  +ED LL  +V  +G + W F+++     LNR  KSC  RW NYL PG+K+G +T +E
Sbjct:    12 WTEQEDILLVNFVHLFGDRRWDFIAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQE 69

Query:    67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 112
             + LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:    70 ERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2090764 MYB30 "myb domain protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 47/114 (41%), Positives = 71/114 (62%)

Query:     7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
             W  EED +L  Y++++GP  W  V    NT L R +KSC  RW NYL+PGIK+G+ T+ E
Sbjct:    17 WTPEEDIILVTYIQEHGPGNWRAVPT--NTGLLRCSKSCRLRWTNYLRPGIKRGNFTEHE 74

Query:    67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEV-FKEKQQREQKDSIRIVD 119
             + +++HLQA  GN+W  IA+ +P RT   +  +W    K+K  +  +DS + +D
Sbjct:    75 EKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKVNQDSHQELD 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2079182 MYB94 "myb domain protein 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 44/108 (40%), Positives = 69/108 (63%)

Query:     7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
             W  EED +L +Y++++GP  W  V    +T L R +KSC  RW NYL+PGIK+G+ T+ E
Sbjct:    17 WTPEEDIILVSYIQEHGPGNWRSVPT--HTGLRRCSKSCRLRWTNYLRPGIKRGNFTEHE 74

Query:    67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDS 114
             + +++HLQA  GN+W  IA+ +P RT   +  +W    +K+ ++  DS
Sbjct:    75 EKMILHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKMNDS 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2032975 MYB116 "myb domain protein 116" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 50/134 (37%), Positives = 79/134 (58%)

Query:     7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
             W  EED LL  Y+   G   W+ +++  ++ L R  KSC  RW NYLKP IK+G+LT +E
Sbjct:    23 WTLEEDTLLTNYISHNGEGRWNLLAK--SSGLKRAGKSCRLRWLNYLKPDIKRGNLTPQE 80

Query:    67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKY 126
             Q L++ L +K GN+W KI+  +PGRT   +  +W    +KQ R+       +D  + HK+
Sbjct:    81 QLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQARQLN-----IDS-NSHKF 134

Query:   127 DQILETF-AEKLVN 139
              +++ +F   +L+N
Sbjct:   135 IEVVRSFWFPRLIN 148

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2059329 MYB81 "myb domain protein 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
 Identities = 44/103 (42%), Positives = 63/103 (61%)

Query:     7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
             W   ED LL AYV ++G   W+ V    N+ L+R  KSC  RW N+L+P +KKG+ T++E
Sbjct:    25 WTQAEDNLLIAYVDKHGDGNWNAVQN--NSGLSRCGKSCRLRWVNHLRPDLKKGAFTEKE 82

Query:    67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109
             +  VI L A  GNKW ++A E+PGRT   +  +W    ++ QR
Sbjct:    83 EKRVIELHALLGNKWARMAEELPGRTDNEIKNFWNTRLKRLQR 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2025565 MYB60 "myb domain protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 47/108 (43%), Positives = 66/108 (61%)

Query:     7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
             W  EED +L +Y++++GP  W  V    NT L R +KSC  RW NYL+PGIK+G+ T  E
Sbjct:    17 WTPEEDIILVSYIQEHGPGNWRSVPT--NTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHE 74

Query:    67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEV-FKEKQQREQKD 113
             + ++IHLQA  GNKW  IA+ +P RT   +  +W    K+K  +   D
Sbjct:    75 EGMIIHLQALLGNKWASIASYLPQRTDNDIKNYWNTHLKKKLNKSDSD 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94IB1	RS2_ORYSJ	No assigned EC number	0.6267	0.88	0.9005	yes	no
O80931	AS1_ARATH	No assigned EC number	0.6983	0.96	0.9155	yes	no
Q9S7B2	RS2_MAIZE	No assigned EC number	0.5789	0.9542	0.9027	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	6e-19
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	3e-18
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	3e-11
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-09
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	7e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-08
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-07
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-06
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-05
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-05
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.003

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 84.4 bits (208), Expect = 6e-19
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSL 62
           +R  W  EED +L +++K+ G   W  + +R    L R  KSC  RW NYL+P +K+G +
Sbjct: 24  KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG--LLRCGKSCRLRWMNYLRPSVKRGGI 81

Query: 63  TDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPID 122
           T +E+ L++ L    GN+W  IA  +PGRT   +  +W     K+   Q    +   P+D
Sbjct: 82  TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 85.0 bits (210), Expect = 3e-18
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 8/119 (6%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W  EED  L  ++ +YG   WS V ++    L R  KSC  RW NYL+P +K+G+ + +E
Sbjct: 17  WSPEEDEKLLRHITKYGHGCWSSVPKQAG--LQRCGKSCRLRWINYLRPDLKRGTFSQQE 74

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHK 125
           ++L+I L A  GN+W +IAA++PGRT   +   W    +K+ R+     R +DP + HK
Sbjct: 75  ENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ-----RGIDP-NTHK 127

Length = 459

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W+  ED  L+A VK+ GP  WS V+  + +      K    RW N+L P +KK + ++EE
Sbjct: 23  WKRTEDEDLKALVKKLGPNNWSKVASLLIS---STGKQSSNRWNNHLNPQLKKKNWSEEE 79

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRTAKR-LGKWWEVFKEKQQREQKDSIRI 117
              +I L  + G +W  IA     RTA++ + ++    ++          R 
Sbjct: 80  DEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRR 131

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53
          R  W  EED LL   VK++G   WS +++ +     R    C  RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP---GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 50.7 bits (122), Expect = 7e-09
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          +  W  EED LL   VK+YG   W  +++ +     R A+ C ERW+N LKP
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP---GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
          W  EED  L   V++YG   W  +++     L R   +C +RW+  L+P   +G  T EE
Sbjct: 1  WTEEEDEKLLKLVEKYGND-WKQIAEE----LGRTPSACRDRWRRKLRPKRSRGPWTKEE 55

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 6  RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53
           W  EED LL   VK+YG   W  +++ +     R  K C ERW+N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPG---RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 59  KGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW 100
           +G  T EE  L+I    KHGN  W KIA  +PGRT  +    W
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 59  KGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEK 106
           KG  T+EE  L+I L  K+G N W+KIA E+PGRTA++  + W    + 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 63  TDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFK 104
           T+EE  L++    K+G N W+KIA E+PGRT K+  + W    
Sbjct: 3   TEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 5  QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54
          ++W  EED  L   V++YG   W+ + +      NR +    ++W+N  K
Sbjct: 1  RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
PLN03091	459	hypothetical protein; Provisional	99.96
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.7
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.65
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.65
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.54
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.51
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.38
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.28
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.1
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.06
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.06
PLN03212	249	Transcription repressor MYB5; Provisional	99.02
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.94
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.91
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.86
PLN03091	459	hypothetical protein; Provisional	98.83
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.76
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.36
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.01
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.6
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.28
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.23
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.17
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.13
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.98
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.88
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.82
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.82
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	96.71
KOG4282	345	consensus Transcription factor GT-2 and related pr	96.36
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.28
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.22
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.22
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.17
PRK13923	170	putative spore coat protein regulator protein YlbO	96.16
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.06
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.94
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	95.9
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.8
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.0
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.66
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	94.47
PRK13923	170	putative spore coat protein regulator protein YlbO	94.43
KOG2656	445	consensus DNA methyltransferase 1-associated prote	93.31
PF04696	131	Pinin_SDK_memA: pinin/SDK/memA/ protein conserved	92.29
KOG3841	455	consensus TEF-1 and related transcription factor,	91.57
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.97
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	90.83
KOG4167	907	consensus Predicted DNA-binding protein, contains	85.76
KOG4282	345	consensus Transcription factor GT-2 and related pr	82.62
KOG1194	534	consensus Predicted DNA-binding protein, contains	82.26
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	81.36
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	81.04

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=5.7e-31  Score=244.69  Aligned_cols=114  Identities=33%  Similarity=0.700  Sum_probs=104.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK   82 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~   82 (350)
                      +|++||+|||++|+++|++||..+|..||+.|+.  +|+++||++||.|||+|++++++||.|||++|++++..||++|.
T Consensus        24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~--gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs  101 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGL--LRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWS  101 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhc--CCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccHH
Confidence            6899999999999999999999999999999852  79999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCC
Q 018763           83 KIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIV  118 (350)
Q Consensus        83 ~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~  118 (350)
                      .||+.|||||+++|||||+.++++............
T Consensus       102 ~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~  137 (249)
T PLN03212        102 LIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH  137 (249)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence            999999999999999999999998876544333333

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=9.8e-31  Score=245.57  Aligned_cols=107  Identities=35%  Similarity=0.675  Sum_probs=102.9

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKK   83 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~   83 (350)
                      ||+||+|||++|+++|.+||.++|..|++.++  ++|++++||.||.|||+|++++|.||+|||.+||+++..||++|+.
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--LRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--CCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            59999999999999999999999999999988  4899999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCChhhhHHHHHHHHHHHHHhhh
Q 018763           84 IAAEVPGRTAKRLGKWWEVFKEKQQREQK  112 (350)
Q Consensus        84 IA~~lpgRT~~q~rnRW~~~l~k~~~~~k  112 (350)
                      ||++|||||++.|||+|++.++++.....
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999988876654

>PLN03091 hypothetical protein; Provisional

Probab=99.96  E-value=2.2e-29  Score=249.35  Aligned_cols=109  Identities=37%  Similarity=0.740  Sum_probs=103.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK   82 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~   82 (350)
                      +|++||+|||++|+++|.+||..+|..||+.++.  +|+++|||+||.+||+|++++++||.|||.+|++++++||++|.
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~--gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWs   90 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL--QRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS   90 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhcc--CcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchH
Confidence            6789999999999999999999999999998852  79999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCChhhhHHHHHHHHHHHHHhhhc
Q 018763           83 KIAAEVPGRTAKRLGKWWEVFKEKQQREQKD  113 (350)
Q Consensus        83 ~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~  113 (350)
                      .||++|+|||+++|||||+.+++++.+....
T Consensus        91 kIAk~LPGRTDnqIKNRWnslLKKklr~~~I  121 (459)
T PLN03091         91 QIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI  121 (459)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999998775433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.70  E-value=2.6e-17  Score=168.62  Aligned_cols=99  Identities=30%  Similarity=0.500  Sum_probs=91.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-Cch
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHG-NKW   81 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G-~~W   81 (350)
                      ++|.||++||.+|..+|.+||.++|.+|-+.++   ||+..|||+||.|+|+...+++.||-.||..||.+|.+|| ++|
T Consensus       359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP---nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~W  435 (939)
T KOG0049|consen  359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP---NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNW  435 (939)
T ss_pred             cCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC---CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchH
Confidence            689999999999999999999999999999999   8999999999999999999999999999999999999999 789


Q ss_pred             hhhhhcCCCCChhhhHHHHHHHH
Q 018763           82 KKIAAEVPGRTAKRLGKWWEVFK  104 (350)
Q Consensus        82 ~~IA~~lpgRT~~q~rnRW~~~l  104 (350)
                      .+||.++|+||..|...|=..++
T Consensus       436 akcA~~Lp~~t~~q~~rrR~R~~  458 (939)
T KOG0049|consen  436 AKCAMLLPKKTSRQLRRRRLRLI  458 (939)
T ss_pred             HHHHHHccccchhHHHHHHHHHH
Confidence            99999999999966544433333

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.65  E-value=2.5e-16  Score=117.13  Aligned_cols=60  Identities=42%  Similarity=0.898  Sum_probs=55.3

Q ss_pred             CcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHH
Q 018763            7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLV   70 (350)
Q Consensus         7 WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~L   70 (350)
                      ||+|||++|+.+|..|| .+|..||+.|+   +|++.||+.||+++|++.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~---~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG---NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST---TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC---cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 68999999998   89999999999999999999999999999987

...

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.65  E-value=2.4e-16  Score=161.61  Aligned_cols=109  Identities=27%  Similarity=0.498  Sum_probs=100.9

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCC---ChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 018763            4 RQRWRAEEDALLRAYVKQYGPK---EWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK   80 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~---~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~   80 (350)
                      +..||.|||.+|+++|.....+   +|.+|-++|+   ||+..|...||...|+|++++|.||.+||.+|+.+|.+||.+
T Consensus       305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp---gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k  381 (939)
T KOG0049|consen  305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP---GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK  381 (939)
T ss_pred             hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC---CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence            4789999999999999988544   6999999999   999999999999999999999999999999999999999966


Q ss_pred             -hhhhhhcCCCCChhhhHHHHHHHHHHHHHhhhccc
Q 018763           81 -WKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSI  115 (350)
Q Consensus        81 -W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~  115 (350)
                       |.+|-..||||++.|||.||.+.|....+....+.
T Consensus       382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l  417 (939)
T KOG0049|consen  382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTL  417 (939)
T ss_pred             chhhHHHhcCCccHHHHHHHHHHHHHHhhccCceee
Confidence             99999999999999999999999998876665543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=5.3e-15  Score=148.85  Aligned_cols=107  Identities=29%  Similarity=0.584  Sum_probs=101.0

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 018763            1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK   80 (350)
Q Consensus         1 ~kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~   80 (350)
                      |.|-|-|+.-||+.|..+|.+||.+.|.+|++.++   ..+++||+.||..+|||.|++.-|+.+||.+|+.+...+...
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~---~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~q   80 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN---RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQ   80 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHh---hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCc
Confidence            35678999999999999999999999999999999   799999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018763           81 WKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        81 W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      |..|+..| |||++||-.||+.++-......
T Consensus        81 wrtIa~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   81 WRTIADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             cchHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            99999999 9999999999999987766543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.51  E-value=2.1e-14  Score=146.96  Aligned_cols=105  Identities=30%  Similarity=0.525  Sum_probs=100.4

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKW   81 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W   81 (350)
                      ++.|.|+..||+.|..+|++||+++|..||..+.   .++++||+.||+++++|.++++.|+.+||..|+.+..++|+.|
T Consensus        18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~---~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI---SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             ecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc---ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            3568999999999999999999999999999998   6999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763           82 KKIAAEVPGRTAKRLGKWWEVFKEKQQR  109 (350)
Q Consensus        82 ~~IA~~lpgRT~~q~rnRW~~~l~k~~~  109 (350)
                      ..||..+++||..+|.++|...+.....
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999998887654

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.42  E-value=3e-13  Score=139.79  Aligned_cols=103  Identities=20%  Similarity=0.488  Sum_probs=93.6

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCC--CCCCCCHHHHHHHHHHHH-----
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI--KKGSLTDEEQHLVIHLQA-----   75 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i--~kg~WT~EED~~Li~lv~-----   75 (350)
                      +||+||+||++.|..+|.++| ++|..|+..|+    |.+..|++||++|..++-  +++.||.+|..+|+++|+     
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg----r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~  457 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG----RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIRE  457 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc----cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999 79999999997    999999999999999984  899999999999999996     


Q ss_pred             --Hh-------------------CCchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           76 --KH-------------------GNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        76 --~~-------------------G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                        ++                   +-+|..|+..+.+|+..||+.+|+.++......
T Consensus       458 ~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n  513 (607)
T KOG0051|consen  458 ALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN  513 (607)
T ss_pred             hhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence              23                   135999999999999999999999998876543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.38  E-value=4.7e-13  Score=95.63  Aligned_cols=48  Identities=42%  Similarity=0.776  Sum_probs=43.0

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      |++||+|||++|.++|.+||.++|..||..|+.  +||+.||+.||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~--~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPG--GRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSS--SSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCC--CCCHHHHHHHHHhhC
Confidence            689999999999999999997779999999994  799999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.28  E-value=2.6e-12  Score=91.74  Aligned_cols=46  Identities=37%  Similarity=0.638  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hhhhhhcCC-CCChhhhHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVFK  104 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~-W~~IA~~lp-gRT~~q~rnRW~~~l  104 (350)
                      +++||++||.+|++++.+||.+ |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.10  E-value=4.4e-11  Score=88.83  Aligned_cols=45  Identities=38%  Similarity=0.598  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           62 LTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        62 WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      ||.+||.+|+++|..||++|..||..|+.||+.+|++||...++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999779999999999995543

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.06  E-value=1.9e-10  Score=80.01  Aligned_cols=47  Identities=47%  Similarity=0.816  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      +++||.+||.+|+.++..|| .+|..||..|++||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.06  E-value=3.1e-10  Score=78.89  Aligned_cols=48  Identities=42%  Similarity=0.894  Sum_probs=44.9

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      ++.||++||.+|..++..||..+|..||..|+   +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~---~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP---GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC---CCCHHHHHHHHHHHcC
Confidence            57899999999999999999778999999999   8999999999998764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.02  E-value=4.7e-10  Score=105.29  Aligned_cols=58  Identities=22%  Similarity=0.457  Sum_probs=52.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcC-CCCChhhhHHHHHHHHHHHHHhh
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEV-PGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~l-pgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      ++++++++||+|||++|+++|++|| ++|..||+.+ ++||.+||+.||.++|+...+..
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg   79 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG   79 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC
Confidence            4688999999999999999999999 5799999988 69999999999999998876554

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.94  E-value=1.1e-09  Score=74.99  Aligned_cols=43  Identities=42%  Similarity=0.771  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHH
Q 018763           61 SLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVF  103 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~  103 (350)
                      +||.+||..|+.++..|| .+|..||..|++||..+|+++|+.+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999876

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.91  E-value=2.2e-09  Score=73.46  Aligned_cols=45  Identities=42%  Similarity=0.906  Sum_probs=42.2

Q ss_pred             CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      .||.+||..|..++..||..+|..||..|+   +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~---~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP---GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC---CCCHHHHHHHHHHhC
Confidence            599999999999999999889999999999   799999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.86  E-value=1.3e-09  Score=102.72  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC-CCChhhhHHHHHHHHHHHHHhhhcccC
Q 018763           55 PGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP-GRTAKRLGKWWEVFKEKQQREQKDSIR  116 (350)
Q Consensus        55 p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp-gRT~~q~rnRW~~~l~k~~~~~k~s~~  116 (350)
                      +.+.+|+||+|||.+|+++|.+|| ++|..|++.++ +|+.++||-||.++|+...+.+..+..
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~e   68 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDE   68 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHH
Confidence            345579999999999999999999 55999999998 999999999999999998876655443

>PLN03091 hypothetical protein; Provisional

Probab=98.83  E-value=3.6e-09  Score=106.19  Aligned_cols=59  Identities=19%  Similarity=0.339  Sum_probs=51.9

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcC-CCCChhhhHHHHHHHHHHHHHhh
Q 018763           53 LKPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEV-PGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        53 L~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~l-pgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      .+..+++++||+|||++|+++|.+|| ++|..||+.+ ++|+++|||.||.++|....+..
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg   68 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG   68 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC
Confidence            34678999999999999999999999 4699999988 59999999999999887765544

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.76  E-value=1.7e-08  Score=104.93  Aligned_cols=124  Identities=26%  Similarity=0.441  Sum_probs=97.2

Q ss_pred             CCCcHHHHHHHHHHHHHh----C-------------C------CChhhhhHHhCCCCCCChhhhhhhhhhccCCCC-CCC
Q 018763            5 QRWRAEEDALLRAYVKQY----G-------------P------KEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI-KKG   60 (350)
Q Consensus         5 g~WT~EED~~L~~~V~ky----g-------------~------~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i-~kg   60 (350)
                      +.|+.+||+.|...|..|    |             .      +-|+.|...|+   .|+....+.+-++..+|-- ++|
T Consensus       309 ~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp---~R~~~siy~~~rR~y~~FE~~rg  385 (607)
T KOG0051|consen  309 KKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP---YRDRKSIYHHLRRAYTPFENKRG  385 (607)
T ss_pred             hhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC---cccchhHHHHHHhcCCccccccC
Confidence            789999999999999998    1             0      13788888888   6999998884444443322 899


Q ss_pred             CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHHHHHHHHhhhc
Q 018763           61 SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLV  138 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~iletfa~klv  138 (350)
                      .||++|++.|..++.++|+.|..|+..| ||.+..|+.+|..+.+....      ...++.........++.+...+.
T Consensus       386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~------~~r~~Ws~eEe~~Llk~V~~~~~  456 (607)
T KOG0051|consen  386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK------RNRGAWSIEEEEKLLKTVNEMIR  456 (607)
T ss_pred             CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc------cccCcchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 99999999999999877542      12224445555666666655443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.36  E-value=7.4e-08  Score=99.25  Aligned_cols=100  Identities=23%  Similarity=0.481  Sum_probs=87.6

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCC--CCCCCCCCHHHHHHHHHHHHHhC
Q 018763            1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP--GIKKGSLTDEEQHLVIHLQAKHG   78 (350)
Q Consensus         1 ~kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p--~i~kg~WT~EED~~Li~lv~~~G   78 (350)
                      ++.+|.||++|+..|...+..+| ..|..|...++    |-+..|++||++|..+  .+++++|+.+|+.+|...+...-
T Consensus       288 f~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~----rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~  362 (512)
T COG5147         288 FEQRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG----RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMR  362 (512)
T ss_pred             HhhhccCcccccccccccccccc-chhhHhhhhhc----cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHH
Confidence            35789999999999999999999 68999998885    9999999999999998  57788999999999999887432


Q ss_pred             --------CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           79 --------NKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        79 --------~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                              ..|..|+.++++|...+|+..+.++..
T Consensus       363 ~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         363 LEAQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             HHHhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence                    349999999999999999887765544

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.01  E-value=1.3e-05  Score=59.75  Aligned_cols=50  Identities=16%  Similarity=0.324  Sum_probs=44.8

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCCh---hhhhHHhCCCCCC-Chhhhhhhhhhcc
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEW---SFVSQRMNTPLNR-DAKSCLERWKNYL   53 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W---~~IA~~l~~~~~R-t~~qCr~Rw~n~L   53 (350)
                      |+|-.||+||..++..+|+.||.++|   ..|++.|..  .+ |..||+.+++.|.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~--~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV--DGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC--CCCCHHHHHHHHHHHH
Confidence            57889999999999999999998799   999999873  46 9999999998764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.60  E-value=6e-05  Score=75.90  Aligned_cols=47  Identities=21%  Similarity=0.555  Sum_probs=44.2

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      ...||.+|+-+|++++..||.+||..||.+|+   .|+..+|.++|.+++
T Consensus        72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIG---tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   72 DPSWTADEEILLLEAAETYGFGNWQDIADHIG---TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc---ccchHHHHHHHHHHH
Confidence            35799999999999999999999999999999   799999999999865

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.28  E-value=0.00051  Score=51.17  Aligned_cols=47  Identities=15%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ch---hhhhhcCC-CC-ChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGN-KW---KKIAAEVP-GR-TAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~-~W---~~IA~~lp-gR-T~~q~rnRW~~~l~  105 (350)
                      +-.||+||...+++++..+|. +|   ..|+..|. .+ |..||+++.+.+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999996 99   99999874 45 99999999887653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.23  E-value=0.00033  Score=62.26  Aligned_cols=52  Identities=25%  Similarity=0.434  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---Cc----hhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           58 KKGSLTDEEQHLVIHLQAKHG---NK----WKKIAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G---~~----W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      ....||.|||.+|.+.|-.|-   +.    +..++..+ +||+..|.-|||.+++++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            457899999999999999883   22    88999999 999999999999999997644

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.17  E-value=0.00047  Score=69.62  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=44.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           56 GIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        56 ~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      .+-...||.+|+.+|++++..|| +||..||.++..||..+|+.+|.++.-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            34566799999999999999999 899999999999999999999986553

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.13  E-value=0.0019  Score=59.54  Aligned_cols=101  Identities=27%  Similarity=0.430  Sum_probs=75.6

Q ss_pred             CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc-CCCC--------------------CCCCCCH
Q 018763            6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL-KPGI--------------------KKGSLTD   64 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L-~p~i--------------------~kg~WT~   64 (350)
                      +|++.+|-.|+.+|..-.  +-..|+..+...-.-|-....+||+..| +|.+                    .+-.||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999999754  6788877665433567788899999865 3322                    3567999


Q ss_pred             HHHHHHHHHHHHhCC---chhhhhh-----cCCCCChhhhHHHHHHHHHHHH
Q 018763           65 EEQHLVIHLQAKHGN---KWKKIAA-----EVPGRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        65 EED~~Li~lv~~~G~---~W~~IA~-----~lpgRT~~q~rnRW~~~l~k~~  108 (350)
                      +|+++|.........   .+.+|-.     +-++||++++.++|..+.+-..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            999999997766543   3666633     3389999999999997665543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.98  E-value=0.00077  Score=68.59  Aligned_cols=45  Identities=20%  Similarity=0.565  Sum_probs=41.9

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY   52 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~   52 (350)
                      ...||.+|..+|.+.|+.|| .+|.+||.+++   +++..||..||.+.
T Consensus       279 dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg---tKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYG-DDWDKVARHVG---TKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhh-hhHHHHHHHhC---CCCHHHHHHHHHcC
Confidence            46899999999999999999 68999999999   89999999999864

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.88  E-value=0.00074  Score=53.37  Aligned_cols=49  Identities=31%  Similarity=0.660  Sum_probs=34.2

Q ss_pred             CCCCcHHHHHHHHHHHHH--h----CC--C-----ChhhhhHHhCC-CCCCChhhhhhhhhhc
Q 018763            4 RQRWRAEEDALLRAYVKQ--Y----GP--K-----EWSFVSQRMNT-PLNRDAKSCLERWKNY   52 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~k--y----g~--~-----~W~~IA~~l~~-~~~Rt~~qCr~Rw~n~   52 (350)
                      |..||.+|...|+.++..  +    +.  .     -|..||..|.. +..||+.||+.+|.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            568999999999999987  2    11  1     39999999843 4589999999999874

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.82  E-value=0.0013  Score=68.48  Aligned_cols=46  Identities=22%  Similarity=0.639  Sum_probs=42.4

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY   52 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~   52 (350)
                      -++.||.+|+-+|.++|+.|| .+|.+||.+++   +||..||..++.+.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg---~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG---TKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC---CCCHHHHHHHHHhc
Confidence            367899999999999999999 68999999999   89999999999763

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.82  E-value=0.00085  Score=53.00  Aligned_cols=53  Identities=32%  Similarity=0.520  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHHHHHH------hC--C------chhhhhhcC----CCCChhhhHHHHHHHHHHHHHhhh
Q 018763           60 GSLTDEEQHLVIHLQAK------HG--N------KWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQK  112 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~------~G--~------~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~k  112 (350)
                      ..||.+|...||+++..      ++  +      -|..||..|    ..||+.||+++|+++.+.......
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~   72 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD   72 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999987      21  1      399999977    479999999999999988775543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=96.71  E-value=0.0011  Score=68.12  Aligned_cols=55  Identities=24%  Similarity=0.456  Sum_probs=49.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018763           57 IKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        57 i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      ++.|.|+.-||++|-..|.+||. .|+.|+..++-.|+.||++||..++....+..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~t   60 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKT   60 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhh
Confidence            56788999999999999999995 59999999999999999999998887766544

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=96.36  E-value=0.57  Score=46.36  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHHHHHHhC----------CchhhhhhcC----CCCChhhhHHHHHHHHHHHHHhhhcc
Q 018763           60 GSLTDEEQHLVIHLQAKHG----------NKWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQKDS  114 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G----------~~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~k~s  114 (350)
                      ..|+.+|-..||++.....          ..|..||..+    .-||+.+|+++|.++.++..+.+...
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~  123 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK  123 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            5799999999999987642          3499999955    46999999999999999988765443

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.28  E-value=0.0035  Score=47.92  Aligned_cols=52  Identities=27%  Similarity=0.378  Sum_probs=33.2

Q ss_pred             CCCCcHHHHHHHHHHHHHhC--------CCChhhhhHHhCCCCCCChhhhhhhhhhccCCCC
Q 018763            4 RQRWRAEEDALLRAYVKQYG--------PKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI   57 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg--------~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i   57 (350)
                      |.+||.+||+.|...|..+.        ..=|.++++.-++  ++|..+-++||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t--~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPT--RHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SS--S--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhccc
Confidence            56899999999999997662        1129999887664  7999999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.22  E-value=0.007  Score=59.22  Aligned_cols=47  Identities=17%  Similarity=0.343  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      -..|+.+|+.+||+.....| ++|..||.+++.|+...|+.+|..+.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34699999999999999999 899999999999999999999876554

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.22  E-value=0.0049  Score=64.19  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVF  103 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~  103 (350)
                      ++.||.+|+.+|++.+..||.+|.+||.++.+||..||--++..+
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            567999999999999999999999999999999999999887654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.17  E-value=0.0047  Score=47.90  Aligned_cols=51  Identities=25%  Similarity=0.503  Sum_probs=41.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCC----------------CChhhhhHHhCC--CCCCChhhhhhhhhhcc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGP----------------KEWSFVSQRMNT--PLNRDAKSCLERWKNYL   53 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~----------------~~W~~IA~~l~~--~~~Rt~~qCr~Rw~n~L   53 (350)
                      ++.+||.+|...|+++|.+|..                ..|..|+..|+.  +..|+..||+..|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999821                149999999843  23799999999998854

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.16  E-value=0.0043  Score=55.88  Aligned_cols=51  Identities=22%  Similarity=0.388  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc-------hhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGNK-------WKKIAAEVPGRTAKRLGKWWEVFKEKQQR  109 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~~-------W~~IA~~lpgRT~~q~rnRW~~~l~k~~~  109 (350)
                      +...||.|+|.+|.+.|-.|+..       ...++..| +||+.+|..|||.+++++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            56789999999999999988733       66777777 99999999999999998754

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.06  E-value=0.0081  Score=45.92  Aligned_cols=50  Identities=16%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hhhhhhcCC-CCChhhhHHHHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHG--------NK-WKKIAAEVP-GRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G--------~~-W~~IA~~lp-gRT~~q~rnRW~~~l~k~~  108 (350)
                      +.+||.+||..|+..|..+.        |+ |..++..-+ .+|-...|+||...++.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            35799999999999996652        22 999999877 9999999999988777654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.94  E-value=0.0038  Score=55.60  Aligned_cols=49  Identities=33%  Similarity=0.630  Sum_probs=41.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHh---CC---CChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763            3 ERQRWRAEEDALLRAYVKQY---GP---KEWSFVSQRMNTPLNRDAKSCLERWKNYLKP   55 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~ky---g~---~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p   55 (350)
                      +.-.||.|||.+|.+.|-+|   |.   ..+.+|+..++    ||+.-|.-||+.++..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~----RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN----RTAAACGFRWNAYVRK   57 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc----ccHHHhcchHHHHHHH
Confidence            45689999999999999999   31   14889999986    9999999999987753

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=95.90  E-value=0.0067  Score=61.93  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVF  103 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~  103 (350)
                      ....||.+|..+|++.++.||..|.+||.++.++|..||--||-.+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            3458999999999999999999999999999999999999888654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.80  E-value=0.017  Score=44.78  Aligned_cols=51  Identities=35%  Similarity=0.662  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------chhhhhhcC-----CCCChhhhHHHHHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHG----N-------------KWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQR  109 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G----~-------------~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~  109 (350)
                      +..||.+|...|++++.+|.    +             -|..|+..|     +.||..+|+.+|..++....+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45799999999999999873    1             299999866     469999999999999877654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.00  E-value=0.019  Score=56.32  Aligned_cols=46  Identities=17%  Similarity=0.414  Sum_probs=43.7

Q ss_pred             CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      .|+.+|+-+|+++....|.+||..||..++   .|+...|+++|..++.
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIadyiG---sr~kee~k~HylK~y~  110 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIADYIG---SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHHHHHh---hhhhHHHHHHHHHHHh
Confidence            599999999999999999999999999999   7999999999998765

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.66  E-value=0.21  Score=56.59  Aligned_cols=102  Identities=17%  Similarity=0.336  Sum_probs=80.0

Q ss_pred             CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhh-------hhhhc--------------------------
Q 018763            6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLE-------RWKNY--------------------------   52 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~-------Rw~n~--------------------------   52 (350)
                      .||.-+=..++.+..+||-.+-..||..|.   ++|...++.       ||..+                          
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~---~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~  902 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME---GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKA  902 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc---CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999997   688777652       22110                          


Q ss_pred             ----------------c-CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhh------------cCCCCChhhhHHHHHH
Q 018763           53 ----------------L-KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAA------------EVPGRTAKRLGKWWEV  102 (350)
Q Consensus        53 ----------------L-~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~------------~lpgRT~~q~rnRW~~  102 (350)
                                      + .+..++..+|.+||..|+-.+.+|| ++|..|-.            +|..||+..|..|.++
T Consensus       903 ~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~  982 (1033)
T PLN03142        903 IGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDT  982 (1033)
T ss_pred             HHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHH
Confidence                            0 0122344599999999999999999 67999833            2258999999999999


Q ss_pred             HHHHHHHh
Q 018763          103 FKEKQQRE  110 (350)
Q Consensus       103 ~l~k~~~~  110 (350)
                      +++-..+.
T Consensus       983 l~~~~~~e  990 (1033)
T PLN03142        983 LIRLIEKE  990 (1033)
T ss_pred             HHHHHHHH
Confidence            99887544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=94.47  E-value=0.1  Score=52.29  Aligned_cols=72  Identities=13%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILE  131 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~ile  131 (350)
                      .+||.+|-.++..+...+|..+..|+..||+|...||+-+|.+--++.--..........|+....|-....
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~~  437 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLRS  437 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHHH
Confidence            369999999999999999999999999999999999999997665554433344445555666655544333

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.43  E-value=0.032  Score=50.38  Aligned_cols=48  Identities=25%  Similarity=0.490  Sum_probs=38.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCC------ChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPK------EWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~------~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      +...||.|+|.+|.+.|-.|+..      ....++..+.    |++..|..||+.++.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~----rt~aac~fRwNs~vr   57 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK----RTAAACGFRWNSVVR   57 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----hhHHHHHhHHHHHHH
Confidence            45689999999999999998532      2666777775    999999999966554

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=93.31  E-value=0.2  Score=50.43  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhhc-----CCC-CChhhhHHHHHHHHHHHHHhhhcc
Q 018763           60 GSLTDEEQHLVIHLQAKHGNKWKKIAAE-----VPG-RTAKRLGKWWEVFKEKQQREQKDS  114 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~~W~~IA~~-----lpg-RT~~q~rnRW~~~l~k~~~~~k~s  114 (350)
                      ..||.+|.+-|+++++.|.-+|-.|+..     ++. ||-..++.||..+.++..+....+
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            5799999999999999999999999987     555 999999999999999988775544

>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO

Probab=92.29  E-value=1.2  Score=38.59  Aligned_cols=25  Identities=28%  Similarity=0.652  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 018763          312 DAEAKEQKLAEQWSAKHLRLTKFLE  336 (350)
Q Consensus       312 dae~ke~k~~e~w~~~~~~~~~~~~  336 (350)
                      +....+.++++.|...+..|++||-
T Consensus        77 e~~~~~~~~~~~~~~~~~~l~~fi~  101 (131)
T PF04696_consen   77 EQKKEEERLMEIWHEHYLALANFIR  101 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4555677889999999999999975

Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=91.57  E-value=1.2  Score=44.94  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC----------------CchhhhhhcC-----CCCChhhhHHHHHHHHHHHHHhhhccc
Q 018763           57 IKKGSLTDEEQHLVIHLQAKHG----------------NKWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQREQKDSI  115 (350)
Q Consensus        57 i~kg~WT~EED~~Li~lv~~~G----------------~~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~~~k~s~  115 (350)
                      .--|.|+++=|+-..++...|.                ++=..||+++     ..||.+||-.+-+.+.+++.+..+...
T Consensus        74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq~kl  153 (455)
T KOG3841|consen   74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKL  153 (455)
T ss_pred             ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4457899999999999988874                1247888866     468999999999999999888765544


Q ss_pred             CCCCCCChhhhHHHHHHHHhhhccC
Q 018763          116 RIVDPIDEHKYDQILETFAEKLVNN  140 (350)
Q Consensus       116 ~~~~p~~~~~~d~iletfa~klv~~  140 (350)
                      +.. +..+..++++..--+.+.+..
T Consensus       154 k~~-~sKdK~Lq~ma~~~saq~~sa  177 (455)
T KOG3841|consen  154 KDQ-SSKDKALQHMAEMGSAQITSA  177 (455)
T ss_pred             hcc-cchHHHHHhhhcccccccccc
Confidence            432 333334444444333344333

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.97  E-value=0.31  Score=41.56  Aligned_cols=53  Identities=25%  Similarity=0.421  Sum_probs=42.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chhhhhhcC------------CCCChhhhHHHHHHHHHHHH
Q 018763           56 GIKKGSLTDEEQHLVIHLQAKHGN----KWKKIAAEV------------PGRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        56 ~i~kg~WT~EED~~Li~lv~~~G~----~W~~IA~~l------------pgRT~~q~rnRW~~~l~k~~  108 (350)
                      +.++..||++||.-|+-.+.+||-    .|..|-..+            ..||+..+..|.+++++-..
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE  114 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence            556778999999999999999996    698886532            56999999999999988654

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=90.83  E-value=0.45  Score=37.79  Aligned_cols=49  Identities=31%  Similarity=0.509  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHHh---C----C------chhhhhhcC-----CCCChhhhHHHHHHHHHHHHH
Q 018763           61 SLTDEEQHLVIHLQAKH---G----N------KWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQR  109 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~---G----~------~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~  109 (350)
                      .||++.+..|++++...   |    +      .|..|+..|     ...|..||++||..+.+.-..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~   67 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRI   67 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence            49999999999998653   1    1      299998877     234788999999998887653

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=85.76  E-value=7  Score=42.68  Aligned_cols=43  Identities=21%  Similarity=0.553  Sum_probs=39.0

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018763            5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      -.||+.|-.++..++..|. +++..|++.++   ++|..||-+-|+.
T Consensus       620 d~WTp~E~~lF~kA~y~~~-KDF~~v~km~~---~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYS-KDFIFVQKMVK---SKTVAQCVEYYYT  662 (907)
T ss_pred             ccccHHHHHHHHHHHHHhc-ccHHHHHHHhc---cccHHHHHHHHHH
Confidence            4799999999999999998 78999999999   8999999998874

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=82.62  E-value=1.8  Score=42.91  Aligned_cols=48  Identities=25%  Similarity=0.418  Sum_probs=38.6

Q ss_pred             CCCcHHHHHHHHHHHHHh---------CCCChhhhhHHhC-CCCCCChhhhhhhhhhc
Q 018763            5 QRWRAEEDALLRAYVKQY---------GPKEWSFVSQRMN-TPLNRDAKSCLERWKNY   52 (350)
Q Consensus         5 g~WT~EED~~L~~~V~ky---------g~~~W~~IA~~l~-~~~~Rt~~qCr~Rw~n~   52 (350)
                      ..|+.+|-..|+.+..+.         ....|..||..+. .+..|++.||+.+|.|.
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl  112 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL  112 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            689999999999998754         1135999999553 34579999999999874

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=82.26  E-value=5.2  Score=41.37  Aligned_cols=51  Identities=20%  Similarity=0.292  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~  108 (350)
                      ....||.||--++-+.+..||.++.+|-+.||.|+-..+..+|....+...
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~  236 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE  236 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence            345799999999999999999999999999999999999999887766644

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=81.36  E-value=1.7  Score=34.67  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=17.8

Q ss_pred             CCCCcHHHHHHH--------HHHHHHhCCCChhhhhHHh
Q 018763            4 RQRWRAEEDALL--------RAYVKQYGPKEWSFVSQRM   34 (350)
Q Consensus         4 kg~WT~EED~~L--------~~~V~kyg~~~W~~IA~~l   34 (350)
                      .|-||+++|+.|        ..++++||   +..|+.+.
T Consensus        47 ~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R~   82 (87)
T PF11626_consen   47 PGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERRK   82 (87)
T ss_dssp             TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHHH
T ss_pred             CCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHHH
Confidence            578999999999        56667777   67776553

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=81.04  E-value=2.7  Score=33.30  Aligned_cols=46  Identities=24%  Similarity=0.543  Sum_probs=35.2

Q ss_pred             CCcHHHHHHHHHHHHHh---CCC---------ChhhhhHHhCC--CCCCChhhhhhhhhh
Q 018763            6 RWRAEEDALLRAYVKQY---GPK---------EWSFVSQRMNT--PLNRDAKSCLERWKN   51 (350)
Q Consensus         6 ~WT~EED~~L~~~V~ky---g~~---------~W~~IA~~l~~--~~~Rt~~qCr~Rw~n   51 (350)
                      +||++.|+.|++++...   |..         .|..|+..|..  +...+..||..||..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~   60 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT   60 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence            59999999999998655   212         39999988843  335678999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-13
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-13
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		4e-13
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		4e-13
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-12
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		9e-12
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		8e-11
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		5e-10
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		6e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-04
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-04
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		3e-04

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
          + RW  EED  L+  V+Q G  +W  ++   N   NR    C  RW+  L P + KG  T
Sbjct: 6  KTRWTREEDEKLKKLVEQNGTDDWKVIA---NYLPNRTDVQCQHRWQKVLNPELIKGPWT 62
Query: 64 DEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAK 94
           EE   VI L  K+G K W  IA  + GR  K
Sbjct: 63 KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGK 94

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
          W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE
Sbjct: 7  WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
            ++     + GN+W +IA  +PGRT
Sbjct: 64 DRIIYQAHKRLGNRWAEIAKLLPGRT 89

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
          W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE
Sbjct: 7  WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
            ++     + GN+W +IA  +PGRT
Sbjct: 64 DRIIYQAHKRLGNRWAEIAKLLPGRT 89

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W  EED  +  +V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE
Sbjct: 30  WTKEEDQRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRT 92
             ++     + GN+W +IA  +PGRT
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRT 112

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
          W  EED  +   VK+YG K+W+ +++ +     R  K C ERW N+L P +KK S T+EE
Sbjct: 10 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSSWTEEE 66
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
            ++       GN+W +IA  +PGRT
Sbjct: 67 DRIIFEAHKVLGNRWAEIAKLLPGRT 92

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 11  EDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLV 70
           ED L+R YVK+ GP+ W  ++  +    NR  K C ERW N+L P + K + T EE   +
Sbjct: 9   EDDLIREYVKENGPQNWPRITSFL---PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETI 65
Query: 71  IHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100
                K G+KW  IA  +PGRT   +   W
Sbjct: 66  FRNYLKLGSKWSVIAKLIPGRTDNAIKNRW 95

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 3   ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSL 62
           ++Q++  EED +L+  V Q+G  +W  ++    T  NR+A+ C +RWKNYL P I     
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMIAA---TFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 63  TDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK 106
           T EE  L++    ++G +W  IA   PGRT   +   W     K
Sbjct: 66  TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 10  EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHL 69
           EED  L+  V +YG K+W  +SQ M   + R+ + C ERW NY+ P ++    + EE  L
Sbjct: 7   EEDLKLQQLVMRYGAKDWIRISQLM---ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 70  VIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 112
           +    A++G KW KI+  +  R+   +   W +    + + QK
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          W  EED  L   V++YGPK WS +++ +     R  K C ERW N+L P
Sbjct: 6  WTKEEDQRLIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P
Sbjct: 6  WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P
Sbjct: 6  WTKEEDQRVIELVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNP 51

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59
          WR  ED +L+A V +YG  +WS ++  ++    + AK C  RW  +L P IKK
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKK 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	3e-33
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-31
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-31
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	7e-15
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-30
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-29
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-06
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-29
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	7e-26
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-04
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-17
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-06
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	8e-15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	7e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-15
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-05
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-13
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	4e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	5e-07
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-07
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	3e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	5e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  118 bits (298), Expect = 3e-33
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 4   RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
           + ++  EED  L+  V +YG K+W  +SQ M     R+ + C ERW NY+ P ++    +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI---TRNPRQCRERWNNYINPALRTDPWS 57

Query: 64  DEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 112
            EE  L+    A++G KW KI+  +  R+   +   W +    + + QK
Sbjct: 58  PEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  113 bits (284), Expect = 2e-31
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
          W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE
Sbjct: 7  WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 63

Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
            ++     + GN+W +IA  +PGRT
Sbjct: 64 DRIIYQAHKRLGNRWAEIAKLLPGRT 89

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  113 bits (286), Expect = 3e-31
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 7   WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
           W  EED  +  +V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE
Sbjct: 30  WTKEEDQRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 86

Query: 67  QHLVIHLQAKHGNKWKKIAAEVPGRT 92
             ++     + GN+W +IA  +PGRT
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRT 112

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 69.5 bits (171), Expect = 7e-15
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 39 NRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAK 94
          NR    C  RW+  L P + KG  T EE   VI    K+G K W  IA  + GR  K
Sbjct: 7  NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGK 63

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  112 bits (281), Expect = 1e-30
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
          +   ED L+R YVK+ GP+ W  ++  +    NR  K C ERW N+L P + K + T EE
Sbjct: 5  FTEAEDDLIREYVKENGPQNWPRITSFLP---NRSPKQCRERWFNHLDPAVVKHAWTPEE 61

Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
             +     K G+KW  IA  +PGRT
Sbjct: 62 DETIFRNYLKLGSKWSVIAKLIPGRT 87

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  109 bits (274), Expect = 1e-29
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
          +Q++  EED +L+  V Q+G   W  ++       NR+A+ C +RWKNYL P I     T
Sbjct: 11 KQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP---NRNARQCRDRWKNYLAPSISHTPWT 66

Query: 64 DEEQHLVIHLQAKHGNKWKKIAAEVPGRT 92
           EE  L++    ++G +W  IA   PGRT
Sbjct: 67 AEEDALLVQKIQEYGRQWAIIAKFFPGRT 95

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 54 KPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAK 94
              KK   T EE  ++    A+HG+ WK IAA  P R A+
Sbjct: 6  LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNAR 46

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  108 bits (273), Expect = 5e-29
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 4   RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
           +  W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 64  DEEQHLVIHLQAKHGNKWKKIAAEVPGRT 92
           +EE  ++     + GN+W +IA  +PGRT
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRT 143

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  100 bits (251), Expect = 7e-26
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
          + RW  EED  L+  V+Q G  +W  ++  +    NR    C  RW+  L P + KG  T
Sbjct: 6  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 64 DEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAK 94
           EE   VI L  K+G K W  IA  + GR  K
Sbjct: 63 KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGK 94

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 56 GIKKGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAK 94
           + K   T EE   +  L  ++G   WK IA  +P RT  
Sbjct: 3  HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDV 42

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 6  RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDE 65
           WR  ED +L+A V +YG  +WS ++  ++    + AK C  RW  +L P IKK   +  
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSGP 67

Query: 66 EQ 67
            
Sbjct: 68 SS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 55 PGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAK 94
             K G   + E  ++     K+G N+W +IA+ +  ++AK
Sbjct: 5  SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAK 45

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 67.3 bits (165), Expect = 8e-15
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 2  KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
            + +W  EED  LRA V+Q+G ++W F++       NR  + C  RW   L  
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLSG 56

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 55 PGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAK 94
              K   T EE   +  L  + G   WK +A+  P RT +
Sbjct: 4  GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQ 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 66.8 bits (164), Expect = 8e-15
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          + RW  EED  L+  V+Q G  +W  ++  +    NR    C  RW+  L P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 57 IKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAK 94
          + K   T EE   +  L  ++G + WK IA  +P RT  
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDV 39

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          W  EED  L   V++YGPK WS +++ +     R  K C ERW N+L P
Sbjct: 6  WTKEEDQRLIKLVQKYGPKRWSVIAKHL---KGRIGKQCRERWHNHLNP 51

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 57 IKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAK 94
          + KG  T EE   +I L  K+G  +W  IA  + GR  K
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGK 39

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2  KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI 57
           ++Q+W  EE   ++A V++YG   W+ +S +    +NR A    +RW+   + G+
Sbjct: 9  TKKQKWTVEESEWVKAGVQKYGEGNWAAIS-KNYPFVNRTAVMIKDRWRTMKRLGM 63

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54
          RQ W  EED  LR+ V++YG   WS +        NR +    +RW+   K
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN-NRTSVMLKDRWRTMKK 51

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI 57
          +Q+W  EE   ++A V++YG   W+ +S+      NR A    +RW+   + G+
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGM 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2  KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGS 61
          ++RQ W  EED  LR+ V++YG   WS +        NR +    +RW+   K  +    
Sbjct: 8  RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN-NRTSVMLKDRWRTMKKLKLISSD 66

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 46.6 bits (110), Expect = 5e-07
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 2   KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPL-NRDAKSCLERWKNYLK-----P 55
           + R+ +   E   L   V++ G   W  V         +R      ++WK  +      P
Sbjct: 11  RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 70

Query: 56  GIKKGSLTDEEQ-HLVIHLQAKHGNKWKKIAAE 87
             ++G    +E  + V++       +  +   +
Sbjct: 71  QQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGS 61
          +  W  EE+  L    K   P +W  ++  +     R A  CLE ++  L    ++ S
Sbjct: 9  KTEWSREEEEKLLHLAKLM-PTQWRTIAPIIG----RTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 55  PGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKR-LGKWWEVFKEKQQREQKD 113
              KK   + EE+  ++HL      +W+ I A + GRTA + L  +  +  +  QR+   
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQRDSGP 63

Query: 114 S 114
           S
Sbjct: 64  S 64

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPG 56
             W A+E+  L   V   G   W  V+ +M T   +  + C + +  Y    
Sbjct: 8  DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT---KTKEECEKHYMKYFSGP 57

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 2   KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPL-NRDAKSCLERWKNYLK-----P 55
           + R+ +   E  LL   V+  G   W  V  R    + +R      ++WK  +      P
Sbjct: 29  RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 88

Query: 56  GIKKGSLTDEEQ-HLVIHLQAKHGNKWKK 83
             ++G+   +E    V+  QA        
Sbjct: 89  QQRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 2   KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPL-NRDAKSCLERWKNYLK-----P 55
           + R+ +   E   L   V+  G   W  V  R      +R      ++WK  +      P
Sbjct: 15  RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP 74

Query: 56  GIKKGSLTDEEQ-HLVIHLQAKHGNKWKK 83
             ++G    ++    V+   A    +  K
Sbjct: 75  QQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 54  KPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKD 113
                    T EE+ L     AK G +W KI+  +  RT  ++  +   + + + +   D
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 5  QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLN-RDAKSCLERWKNYLK-----PGIK 58
          + +   E   L   V+  G   W  V  R     + R      ++WK  +      P  +
Sbjct: 1  RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 59 KGSLTDEEQ-HLVIHLQAKHGNK 80
          +G    ++    V+   A    +
Sbjct: 61 RGEPVPQDLLDRVLAAHAYWSQQ 83

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 262 ELQLESEKACRRRE-------KMEEIEAKMKA-LRDEQRATLDRIEAEYREQIAGLRRDA 313
            L  E E   + RE       +++     M+   R++ +  L+       EQ+   + + 
Sbjct: 79  RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138

Query: 314 EAKEQKLAEQ 323
              ++   +Q
Sbjct: 139 RIADKAFYQQ 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.78
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.68
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.67
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.67
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.65
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.62
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.61
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.61
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.57
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.54
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.54
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.51
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.51
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.49
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.47
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.47
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.44
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.44
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.44
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.42
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.42
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.11
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.39
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.38
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.35
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.29
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.27
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.25
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.24
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.23
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.23
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.21
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.19
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.19
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.15
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.14
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.14
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.74
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.07
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.03
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.93
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.79
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.78
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.77
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.72
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.65
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.52
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.44
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.44
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.39
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.34
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.33
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.22
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.19
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.07
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.84
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.77
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.63
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.76
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.6
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.56
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.52
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.52
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.44
2crg_A	70	Metastasis associated protein MTA3; transcription	97.31
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.27
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.25
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.24
2crg_A	70	Metastasis associated protein MTA3; transcription	97.23
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.1
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.7
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.61
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.44
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.17
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.01
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.91
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	91.4
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	90.95
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.02
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	83.61
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.97

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=9.7e-33  Score=227.98  Aligned_cols=104  Identities=30%  Similarity=0.640  Sum_probs=100.4

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKK   83 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~   83 (350)
                      ||+||+|||++|+.+|.+||..+|..||..|+   +||+.||++||.++|+|++++|+||+|||.+|+++|.+||++|..
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~   77 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI---TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNK   77 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT---TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC---CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHH
Confidence            68999999999999999999889999999999   899999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           84 IAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        84 IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      ||..|||||+++|++||+.++++..+.
T Consensus        78 Ia~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           78 ISKFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999999886544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.97  E-value=2.7e-32  Score=224.03  Aligned_cols=102  Identities=35%  Similarity=0.756  Sum_probs=97.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK   82 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~   82 (350)
                      ++|+||+|||++|+++|.+||.++|..||..|+   +|++.||++||.++|+|++++++||+|||.+|++++.+||++|.
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST---TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc---CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            579999999999999999999889999999998   89999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           83 KIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        83 ~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      .||..|||||+++|++||+.+++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=3.2e-32  Score=232.47  Aligned_cols=114  Identities=33%  Similarity=0.621  Sum_probs=105.5

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKK   83 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~   83 (350)
                      ||+||+|||++|+.+|.+||.++|..||..|+   +|++.||++||.++|+|++++|+||.|||.+|+++|.+||++|+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   78 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP---NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSV   78 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT---TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC---CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHH
Confidence            79999999999999999999999999999999   899999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCCCC
Q 018763           84 IAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP  120 (350)
Q Consensus        84 IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p  120 (350)
                      ||..|||||+++|++||+.++++.............|
T Consensus        79 Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p  115 (131)
T 3zqc_A           79 IAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP  115 (131)
T ss_dssp             HTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence            9999999999999999999999887655444443333

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=2e-31  Score=226.16  Aligned_cols=102  Identities=34%  Similarity=0.701  Sum_probs=98.8

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKW   81 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W   81 (350)
                      .+||+||+|||++|+++|.+||. +|..||..|+   +|++.||++||.++|+|++++|+||+|||.+|+++|.+||++|
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~---~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP---NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT---TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC---CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            47899999999999999999996 9999999999   8999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           82 KKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        82 ~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      ..||..|||||+++|++||..++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998874

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=7.5e-31  Score=222.90  Aligned_cols=102  Identities=35%  Similarity=0.743  Sum_probs=98.4

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK   82 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~   82 (350)
                      ++|+||+|||++|+++|.+||.++|..||..|+   +|++.||++||.++|+|.+++++||+|||.+|++++.+||++|+
T Consensus        26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~  102 (128)
T 1h8a_C           26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA  102 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS---SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc---CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            579999999999999999999889999999999   89999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           83 KIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        83 ~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      .||+.|||||+++|++||+.+++++
T Consensus       103 ~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C          103 EIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=1.1e-28  Score=216.67  Aligned_cols=102  Identities=35%  Similarity=0.756  Sum_probs=98.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK   82 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~   82 (350)
                      ++++||+|||++|+.+|.+||..+|..||..|+   +||+.||++||.++|+|.+++++||++||.+|++++.+||++|+
T Consensus        57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~  133 (159)
T 1h89_C           57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA  133 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST---TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC---CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHH
Confidence            579999999999999999999888999999999   89999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           83 KIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        83 ~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      .||+.|||||+++|++||+.+++++
T Consensus       134 ~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          134 EIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=2.3e-28  Score=214.61  Aligned_cols=102  Identities=33%  Similarity=0.672  Sum_probs=61.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGN-KW   81 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~-~W   81 (350)
                      ++++||+|||++|+.+|.+||.++|..||..|+   +|++.||++||.++|+|++++++||+|||.+|+++|..||. +|
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC---CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            578999999999999999999889999999999   89999999999999999999999999999999999999996 69


Q ss_pred             hhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           82 KKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        82 ~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      ..||..|||||+.||++||.+++...
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            99999999999999999999987643

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=6.6e-21  Score=145.72  Aligned_cols=63  Identities=33%  Similarity=0.715  Sum_probs=60.9

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHH
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQ   67 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED   67 (350)
                      .++++||+|||++|+++|.+||.++|..||..|+   +||++||++||.++|+|.+++++||+|||
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST---TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc---CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4789999999999999999999889999999999   89999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.78  E-value=8.3e-20  Score=154.74  Aligned_cols=75  Identities=31%  Similarity=0.605  Sum_probs=51.0

Q ss_pred             hhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           30 VSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        30 IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      ||+.|+   +||+.||++||.++|+|++++|+||+|||.+|+++|..||. +|..||..|||||+.||++||..++...
T Consensus         1 Ia~~~~---~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   76 (128)
T 1h8a_C            1 MEAVIK---NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE   76 (128)
T ss_dssp             ------------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred             CccccC---CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence            788898   89999999999999999999999999999999999999996 6999999999999999999999887643

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.68  E-value=4.1e-17  Score=150.80  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=91.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCC-----ChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC-------------------
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPK-----EWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK-------------------   58 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~-----~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~-------------------   58 (350)
                      .|++||+|||+.|+++|.+||..     .|..||+.|+   |||+.||++||+++|.+.+.                   
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp---GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP---NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST---TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC---CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            47899999999999999999854     2999999999   89999999999999999886                   


Q ss_pred             ----------CCCCCHHHHHHHHHHHHH-h--------------------------------CC----------------
Q 018763           59 ----------KGSLTDEEQHLVIHLQAK-H--------------------------------GN----------------   79 (350)
Q Consensus        59 ----------kg~WT~EED~~Li~lv~~-~--------------------------------G~----------------   79 (350)
                                +..||.+||..|+..+.+ |                                |.                
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999998877 2                                11                


Q ss_pred             ---------chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           80 ---------KWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        80 ---------~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                               .|..||+.+|+||.+++|+||..+++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     6999999999999999999999999775

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.68  E-value=2.5e-17  Score=138.63  Aligned_cols=82  Identities=20%  Similarity=0.310  Sum_probs=75.1

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCC-CCCChhhhhhhhhhccC-----CCCCCC-CCCHHHHHHHHHHH
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP-LNRDAKSCLERWKNYLK-----PGIKKG-SLTDEEQHLVIHLQ   74 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~-~~Rt~~qCr~Rw~n~L~-----p~i~kg-~WT~EED~~Li~lv   74 (350)
                      ++|++||+|||+.|+++|.+||.++|..|+..+... .+||..||++||+|+++     |.+++| +|+++++.+|+.++
T Consensus        15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h   94 (121)
T 2juh_A           15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH   94 (121)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence            678999999999999999999988999999986210 18999999999999998     999999 89999999999999


Q ss_pred             HHhCCchhh
Q 018763           75 AKHGNKWKK   83 (350)
Q Consensus        75 ~~~G~~W~~   83 (350)
                      ..+||+|..
T Consensus        95 ~~~gn~~~~  103 (121)
T 2juh_A           95 AYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHccchhc
Confidence            999999987

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.67  E-value=1.4e-17  Score=128.70  Aligned_cols=59  Identities=27%  Similarity=0.392  Sum_probs=47.9

Q ss_pred             hhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           46 LERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        46 r~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      --||.|+|+|++++++||+|||++|++++.+||++|+.||+.| |||++|||+||+.+.+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 9999999999997543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.67  E-value=1e-16  Score=135.05  Aligned_cols=76  Identities=24%  Similarity=0.379  Sum_probs=71.3

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHh----CCCCCCChhhhhhhhhhcc-----CCCCCCCCCCHHH-HHHHH
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRM----NTPLNRDAKSCLERWKNYL-----KPGIKKGSLTDEE-QHLVI   71 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l----~~~~~Rt~~qCr~Rw~n~L-----~p~i~kg~WT~EE-D~~Li   71 (350)
                      +++++||+|||+.|+++|++||.++|..|+..+    +   +||..||++||+|++     +|.+++|.|+++| +.+|+
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~---~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH---HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC---CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC---CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            578999999999999999999988999999975    5   899999999999999     8999999999999 89999


Q ss_pred             HHHHHhCCc
Q 018763           72 HLQAKHGNK   80 (350)
Q Consensus        72 ~lv~~~G~~   80 (350)
                      .++..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999975

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.65  E-value=1e-16  Score=115.41  Aligned_cols=51  Identities=41%  Similarity=0.860  Sum_probs=48.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPG   56 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~   56 (350)
                      +|++||+|||++|+++|.+||..+|..||..|+   +||+.||++||.++|+|+
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST---TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC---CCCHHHHHHHHHHHcCcC
Confidence            589999999999999999999878999999998   899999999999999985

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=1.7e-16  Score=117.50  Aligned_cols=54  Identities=33%  Similarity=0.743  Sum_probs=51.3

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK   58 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~   58 (350)
                      .++++||+|||++|+++|.+||.++|..||..|+   +||+.||++||.++|+|+++
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS---SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc---CCCHHHHHHHHHHHcCCccC
Confidence            3689999999999999999999889999999999   89999999999999999876

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.64  E-value=1.6e-16  Score=114.40  Aligned_cols=51  Identities=33%  Similarity=0.784  Sum_probs=48.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPG   56 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~   56 (350)
                      ++++||+|||++|+++|.+||.++|..||+.|+   +||+.||++||.++|+|+
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST---TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC---CCCHHHHHHHHHHHcCcC
Confidence            589999999999999999999779999999999   899999999999999985

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=3.7e-16  Score=117.94  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=56.5

Q ss_pred             hccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018763           51 NYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        51 n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      .+|+|.+++++||.|||.+|++++..||++|..||. ++|||++||++||+.++++..+..
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            379999999999999999999999999999999999 889999999999999999987654

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.61  E-value=4.8e-16  Score=118.36  Aligned_cols=61  Identities=30%  Similarity=0.493  Sum_probs=55.8

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCC
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT   63 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT   63 (350)
                      +++++||+|||++|+++|.+||.++|..||..|+.. +||+.||++||.++|+|++.++..+
T Consensus         8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~-~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN-NRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcC-CCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            678999999999999999999988999999999721 6999999999999999999988754

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.61  E-value=4e-16  Score=117.54  Aligned_cols=56  Identities=29%  Similarity=0.652  Sum_probs=50.0

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK   58 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~   58 (350)
                      .||++||+|||++|+++|.+||.++|..||+.++. .+||+.||++||+|+++|+++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~-~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPF-VNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC-SSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCC-CCCCHHHHHHHHHHHhccCCC
Confidence            58899999999999999999999899999998641 179999999999999998874

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.57  E-value=1.7e-15  Score=116.30  Aligned_cols=58  Identities=21%  Similarity=0.223  Sum_probs=55.0

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           53 LKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        53 L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      ++|.+++++||.|||.+|++++..||++|..||.+|||||++||++||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999987654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=5.4e-15  Score=109.65  Aligned_cols=52  Identities=21%  Similarity=0.436  Sum_probs=48.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI   57 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i   57 (350)
                      .+++||+|||++|+++|.+||.++|..||+.|+   +||+.||++||.++|.++.
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC---TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT---TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC---CCCHHHHHHHHHHHccCCC
Confidence            578999999999999999999889999999999   8999999999999998753

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.54  E-value=3.4e-15  Score=110.50  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=50.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      +|.+++++||+|||.+|+++|.+|| ++|..||..|+|||+.||++||+++++..
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            5789999999999999999999999 69999999999999999999999887653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.54  E-value=5.6e-15  Score=106.20  Aligned_cols=50  Identities=28%  Similarity=0.462  Sum_probs=46.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           57 IKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        57 i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      +++++||+|||.+|+++|.+||. +|..||..|+|||+.||++||++++..
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999998 899999999999999999999998863

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.53  E-value=6.1e-15  Score=106.62  Aligned_cols=51  Identities=35%  Similarity=0.583  Sum_probs=46.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      ||++||+|||++|+++|.+||.++|..||..|+. .+||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~-~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF-NNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC-SSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCCCHHHHHHHHHHHHc
Confidence            6899999999999999999998899999999972 15999999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.51  E-value=1.4e-14  Score=104.69  Aligned_cols=49  Identities=27%  Similarity=0.338  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCChhhhHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP--GRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp--gRT~~q~rnRW~~~l~k  106 (350)
                      ++++||+|||.+|+++|..|| ++|..||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999999874

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.51  E-value=1e-14  Score=104.94  Aligned_cols=49  Identities=33%  Similarity=0.563  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           57 IKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        57 i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      +++++||+|||.+|+++|.+||. +|..||..|+|||+.||++||.+++.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999997 69999999999999999999998875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.49  E-value=2.1e-14  Score=106.46  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      .+.+.+++||+|||.+|+++|..|| ++|..||..|+|||+.||++||..++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678999999999999999999999 7999999999999999999999988753

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.4e-14  Score=110.46  Aligned_cols=57  Identities=21%  Similarity=0.374  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      .|.+++++||+|||.+|+++|.+|| ++|..||..|+|||+.||++||+++|....+.
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4688999999999999999999999 79999999999999999999999998875543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.47  E-value=4e-14  Score=104.33  Aligned_cols=48  Identities=19%  Similarity=0.480  Sum_probs=45.0

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      +++||+|||++|+++|.+||.++|..||+.|+.  +||+.||++||.+++
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~--~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNWADIADYVGN--ARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCS--SCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCC--CCCHHHHHHHHHHHc
Confidence            688999999999999999999999999999983  599999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.47  E-value=5.4e-14  Score=106.97  Aligned_cols=57  Identities=23%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCChhhhHHHHHHHHHHHH
Q 018763           52 YLKPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP--GRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        52 ~L~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp--gRT~~q~rnRW~~~l~k~~  108 (350)
                      ..++..++++||+|||.+|+++|.+|| ++|..||..|+  |||+.||++||+++++...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i   62 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL   62 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence            356778899999999999999999999 69999999999  9999999999999998864

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=4e-14  Score=109.26  Aligned_cols=56  Identities=27%  Similarity=0.513  Sum_probs=51.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCC-----CChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGP-----KEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGS   61 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~-----~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~   61 (350)
                      .++.||+|||++|+++|.+||.     .+|..||..|+   +||+.||+.||++||.+.++.|.
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~---~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG---NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS---SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999996     78999999999   89999999999999998777664

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.8e-14  Score=108.60  Aligned_cols=53  Identities=23%  Similarity=0.509  Sum_probs=48.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG   60 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg   60 (350)
                      +++.||+|||++|+++|..||. +|..||+ ++   +||+.||++||.++|+|.++++
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~---gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II---GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH---SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc---CcCHHHHHHHHHHHhChHhcCC
Confidence            6889999999999999999995 8999999 77   7999999999999999876654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=5.4e-14  Score=108.50  Aligned_cols=57  Identities=28%  Similarity=0.290  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHG------NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G------~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      +|++.+++||.|||.+|++++..||      ++|..||.+|+|||+.||++||+.++.+..+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999      78999999999999999999999998876543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.42  E-value=1.6e-13  Score=103.30  Aligned_cols=51  Identities=31%  Similarity=0.416  Sum_probs=46.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCChhhhHHHHHHHHHHH
Q 018763           57 IKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP--GRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        57 i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp--gRT~~q~rnRW~~~l~k~  107 (350)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.||++||+++++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4688999999999999999999 58999999865  999999999999998753

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.42  E-value=1.3e-13  Score=101.68  Aligned_cols=51  Identities=20%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC-CCChhhhHHHHHHHH
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP-GRTAKRLGKWWEVFK  104 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp-gRT~~q~rnRW~~~l  104 (350)
                      +..+.+++||++||.+|+++|.+|| ++|..||.+|+ +||+.||++||.++.
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999999 89999999999 999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.11  E-value=2e-14  Score=114.84  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=53.6

Q ss_pred             hccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           51 NYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        51 n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      ..++|.+++|+||.|||.+|++++..||++|..||..|+|||++||++||+.++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            357789999999999999999999999999999999999999999999999998874

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.39  E-value=2.5e-13  Score=111.61  Aligned_cols=78  Identities=18%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCC-CCCCChhhhhhhhhhcc-----CCCCCCCCCCHHHHHH-HHHHH
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNT-PLNRDAKSCLERWKNYL-----KPGIKKGSLTDEEQHL-VIHLQ   74 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-~~~Rt~~qCr~Rw~n~L-----~p~i~kg~WT~EED~~-Li~lv   74 (350)
                      +++++||+|||+.|+++|.+||.++|..|+..+.. -.+||..+|++||+|++     +|.+++|.-++.|-.. ++++.
T Consensus        11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~   90 (105)
T 2aje_A           11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAH   90 (105)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHH
Confidence            57899999999999999999998899999996520 01899999999999998     7999999888887765 77777


Q ss_pred             HHhCC
Q 018763           75 AKHGN   79 (350)
Q Consensus        75 ~~~G~   79 (350)
                      ..+|+
T Consensus        91 ~~~~~   95 (105)
T 2aje_A           91 GYWTQ   95 (105)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=1.8e-13  Score=104.99  Aligned_cols=53  Identities=21%  Similarity=0.440  Sum_probs=49.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK   59 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~k   59 (350)
                      ++++||+|||++|+++|.+||. +|..||..|+   +||+.||+.||+++|.+.++.
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~---~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG---SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS---SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999995 9999999999   899999999999998776554

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.35  E-value=1.3e-12  Score=103.16  Aligned_cols=69  Identities=20%  Similarity=0.382  Sum_probs=59.5

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCChhhhhHH----hCCCCCCChhhhhhhhhhcc-----CCCCCCCC-CCHHHHHHHHHHH
Q 018763            5 QRWRAEEDALLRAYVKQYGPKEWSFVSQR----MNTPLNRDAKSCLERWKNYL-----KPGIKKGS-LTDEEQHLVIHLQ   74 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~----l~~~~~Rt~~qCr~Rw~n~L-----~p~i~kg~-WT~EED~~Li~lv   74 (350)
                      ++||+|||+.|+++|++||.++|..|++.    ++   +||+.||++||+|++     +|.+++|. ...+.+..++.+.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~---~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~   77 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD---HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT---TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC---CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHH
Confidence            57999999999999999998899999996    66   899999999999988     67766664 7777778888776


Q ss_pred             HH
Q 018763           75 AK   76 (350)
Q Consensus        75 ~~   76 (350)
                      ..
T Consensus        78 a~   79 (83)
T 2ckx_A           78 AY   79 (83)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.29  E-value=2.3e-12  Score=99.41  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=48.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           55 PGIKKGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        55 p~i~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      +.+.+++||.+||.+|++++..||    ++|..||.+|||||.+||++||+.++..
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456789999999999999999999    6899999999999999999999998764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=5.1e-12  Score=98.81  Aligned_cols=46  Identities=22%  Similarity=0.553  Sum_probs=44.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY   52 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~   52 (350)
                      .++.||+|||++|+++|.+|| ++|..||+.|+   +||+.||+.||.++
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~---~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK-DDWNKVSEHVG---SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS---SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC---CCCHHHHHHHHHHh
Confidence            368999999999999999999 89999999999   89999999999998

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.27  E-value=2.5e-12  Score=109.21  Aligned_cols=78  Identities=18%  Similarity=0.348  Sum_probs=56.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK   82 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~   82 (350)
                      ++|.||+|||++|+++|.+|| .+|..||..|+   |||+.||+.||+++|++.+..++|+.+--    ......+..|.
T Consensus        53 ~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~---gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~~~  124 (131)
T 3zqc_A           53 VKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP---GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRKAA  124 (131)
T ss_dssp             CCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST---TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC------
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC---CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhhhh
Confidence            578999999999999999999 68999999999   89999999999999999999998875421    00111234577


Q ss_pred             hhhhcC
Q 018763           83 KIAAEV   88 (350)
Q Consensus        83 ~IA~~l   88 (350)
                      .|++.|
T Consensus       125 ~i~k~~  130 (131)
T 3zqc_A          125 DVPKKL  130 (131)
T ss_dssp             ------
T ss_pred             hcchhc
Confidence            776654

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.25  E-value=1.8e-11  Score=96.66  Aligned_cols=71  Identities=15%  Similarity=0.333  Sum_probs=56.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHGN-KWKKIAAE----VPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILET  132 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~-~W~~IA~~----lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~ilet  132 (350)
                      ++||.|||..|+++|.+||. +|+.|++.    |+|||+.+||+||+++++......  ......|++....+.++.-
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p--~~~~~~~~p~~~~~rv~~~   76 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP--QQRRGEPVPQDLLDRVLAA   76 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCG--GGCCSSCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCc--ccccCCCCCHHHHHHHHHH
Confidence            47999999999999999997 99999995    899999999999999998664321  1223457776666777653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.24  E-value=7.8e-12  Score=105.51  Aligned_cols=54  Identities=31%  Similarity=0.556  Sum_probs=50.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      .+..++|+||+|||++|+++|..||.+|..||..|+|||+.||+.||.+++...
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   59 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS   59 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence            457889999999999999999999999999999999999999999999988654

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=95.52  Aligned_cols=51  Identities=20%  Similarity=0.358  Sum_probs=44.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK   59 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~k   59 (350)
                      ++++||+|||++|+++|.+|| .+|..||+.|+    ||+.||++||+. |......
T Consensus        22 ~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~lg----Rt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG----RSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHHT----SCHHHHHHHHHH-CSCCCSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHhC----CCHHHHHHHHHH-HHHHccC
Confidence            689999999999999999999 46999999993    999999999985 5554443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.23  E-value=3.8e-12  Score=99.58  Aligned_cols=48  Identities=17%  Similarity=0.233  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHH
Q 018763           56 GIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVF  103 (350)
Q Consensus        56 ~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~  103 (350)
                      ...+++||.|||.+|++++.+||++|..||.+|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999865

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.21  E-value=9.7e-12  Score=101.34  Aligned_cols=51  Identities=33%  Similarity=0.543  Sum_probs=47.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           56 GIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        56 ~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      ++++|+||+|||.+|+++|..||. +|..||..|||||+.||+.||..++..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   52 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   52 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence            468999999999999999999996 699999999999999999999998754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.19  E-value=3.3e-11  Score=99.04  Aligned_cols=76  Identities=14%  Similarity=0.296  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcC----CCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHH
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQ  128 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~  128 (350)
                      .+..++++||.|||..|++.|.+||. +|+.|+..+    ++||+.+|++||+++++.......  .....|++...+++
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~--~~rg~~~P~~~l~r   85 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ--QRRGEPVPQELLNR   85 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTT--TTTCCSCCCHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcc--cccCCCCCHHHHHH
Confidence            34667899999999999999999997 999999955    899999999999999986543221  22345777777787


Q ss_pred             HHH
Q 018763          129 ILE  131 (350)
Q Consensus       129 ile  131 (350)
                      +++
T Consensus        86 v~~   88 (105)
T 2aje_A           86 VLN   88 (105)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.19  E-value=3.9e-11  Score=100.87  Aligned_cols=77  Identities=16%  Similarity=0.315  Sum_probs=59.3

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhH
Q 018763           53 LKPGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAE----VPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYD  127 (350)
Q Consensus        53 L~p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~----lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d  127 (350)
                      +.+..++++||.|||+.|+++|.+||. +|+.|+..    |+|||+.+|++||+++++.......  .....|......+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~--~krg~~~p~e~~~   88 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ--QRRGEPVPQDLLD   88 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCST--TCCCSCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCc--ccCCCCCCHHHHH
Confidence            566788999999999999999999997 99999997    4999999999999999986432211  1112355555555


Q ss_pred             HHHH
Q 018763          128 QILE  131 (350)
Q Consensus       128 ~ile  131 (350)
                      .++.
T Consensus        89 rv~~   92 (121)
T 2juh_A           89 RVLA   92 (121)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.15  E-value=3.7e-11  Score=89.41  Aligned_cols=51  Identities=24%  Similarity=0.328  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchhhhh---hcCCCCChhhhHHHHHHHHHHH
Q 018763           57 IKKGSLTDEEQHLVIHLQAKHGNKWKKIA---AEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        57 i~kg~WT~EED~~Li~lv~~~G~~W~~IA---~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      -++.+||+|||..|++.|++||.+|..|+   .++++||..++++||+++.+..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            35789999999999999999999999999   5789999999999999998763

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.14  E-value=1.5e-11  Score=94.80  Aligned_cols=49  Identities=18%  Similarity=0.541  Sum_probs=44.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhC---CCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            3 ERQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      .++.||++||.+|.++|..||   +.+|..||..|+   |||..||+.||.+++.
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp---GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP---SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS---SSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence            467899999999999999999   457999999999   8999999999998765

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.14  E-value=3.3e-11  Score=98.78  Aligned_cols=49  Identities=20%  Similarity=0.403  Sum_probs=45.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      +|+||+|||.+|+++|..||. +|..||..|||||+.||+.||.+++...
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~   50 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA   50 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence            589999999999999999996 8999999999999999999999988654

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.74  E-value=4.9e-12  Score=100.95  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=45.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP   55 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p   55 (350)
                      .+++||+|||++|+++|..||. +|..||..|+   |||+.||+.||+++|..
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~---gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG---SKTVSQCKNFYFNYKKR   63 (89)
Confidence            4789999999999999999995 8999999999   89999999999998864

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.07  E-value=1.8e-10  Score=92.67  Aligned_cols=52  Identities=21%  Similarity=0.365  Sum_probs=47.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR  109 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~  109 (350)
                      .+++||.|||.+|++++..||    ++|..||..|||||.++|++||+.++.....
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~   62 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY   62 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            467899999999999999996    6799999999999999999999999887643

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.06  E-value=3.1e-10  Score=95.51  Aligned_cols=54  Identities=19%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCChhhhHHHHHHHHHHHH
Q 018763           55 PGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAE----VPGRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        55 p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~----lpgRT~~q~rnRW~~~l~k~~  108 (350)
                      ...++++||.|||+.|+++|++||. +|+.|+..    |++||+.+|++||+++++...
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            3456889999999999999999996 99999985    489999999999999998754

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.03  E-value=9.5e-11  Score=108.42  Aligned_cols=55  Identities=25%  Similarity=0.498  Sum_probs=48.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763           55 PGIKKGSLTDEEQHLVIHLQAKHGNK------WKKIAAEVPGRTAKRLGKWWEVFKEKQQR  109 (350)
Q Consensus        55 p~i~kg~WT~EED~~Li~lv~~~G~~------W~~IA~~lpgRT~~q~rnRW~~~l~k~~~  109 (350)
                      +.+++++||+|||++|+++|.+||++      |..||+.|||||++|||+||+.+|++...
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35788999999999999999999985      99999999999999999999999988653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.93  E-value=5.7e-10  Score=89.76  Aligned_cols=47  Identities=17%  Similarity=0.485  Sum_probs=43.4

Q ss_pred             CCCCcHHHHHHHHHHHHHhC---CCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            4 RQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      ++.||.|||++|.+++.+||   +..|..||..|+   |||..||+.||.+++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp---GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE---GRTPEEVKKHYEILV   57 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST---TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence            57899999999999999997   467999999999   899999999999864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=4.7e-09  Score=77.87  Aligned_cols=48  Identities=15%  Similarity=0.153  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      ..++||++|+.++++++..||.+|..||..||+||..+|..+|...++
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999976544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.78  E-value=7.8e-09  Score=76.87  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=44.6

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      +.|++||+|||+.|++.|++||. +|..|+...+.-.+||..+..+||++...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            57899999999999999999995 99999964333238999999999998654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.77  E-value=1e-08  Score=82.32  Aligned_cols=65  Identities=14%  Similarity=0.177  Sum_probs=59.1

Q ss_pred             hhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcC-----CCCChhhhHHHHHHHHHHHHHhh
Q 018763           43 KSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        43 ~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      .=+.++|.++|.+    ++||.||++.|++|+.+||.+|..|+..+     ++||..++|+||..+.++.....
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4578999999976    89999999999999999999999999998     58999999999999998876554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=1.4e-08  Score=75.21  Aligned_cols=47  Identities=11%  Similarity=0.263  Sum_probs=43.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      ..+.||++||+++.+++.+|| .+|..||..|+   +||..||..+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~---~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE---RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT---TSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC---CCCHHHHHHHHHHhc
Confidence            457899999999999999999 79999999999   899999999997654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.65  E-value=2.7e-08  Score=76.36  Aligned_cols=51  Identities=22%  Similarity=0.320  Sum_probs=45.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           56 GIKKGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        56 ~i~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      ..+.+.||.|||.+|.+++..|+    ++|..||..+ |||..+|++||+.+....
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence            45678899999999999999997    5799999998 999999999999997663

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.52  E-value=5.8e-08  Score=89.14  Aligned_cols=49  Identities=16%  Similarity=0.344  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      ..++||.||+.++++++.+||++|..||+.|++||..||+++|..++++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999876654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.44  E-value=1.1e-07  Score=70.09  Aligned_cols=48  Identities=21%  Similarity=0.427  Sum_probs=43.3

Q ss_pred             CCCCcHHHHHHHHHHHHHh--------CCCChhhhhH-HhCCCCCCChhhhhhhhhhccC
Q 018763            4 RQRWRAEEDALLRAYVKQY--------GPKEWSFVSQ-RMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~ky--------g~~~W~~IA~-~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      |.+||+|||+.|..+|.+|        |..-|..+++ .++   ++|..+|++||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~---~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT---QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS---SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC---CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        5456999999 788   8999999999999875

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.44  E-value=1.7e-07  Score=71.83  Aligned_cols=48  Identities=15%  Similarity=0.374  Sum_probs=42.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHhC---CCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            3 ERQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      +++.||.|||++|..++.+|+   ++.|..||..|+    ||..+|+.||..+..
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg----Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG----RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT----SCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence            567899999999999999997   356999999985    999999999987654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.39  E-value=2.9e-07  Score=84.55  Aligned_cols=49  Identities=24%  Similarity=0.516  Sum_probs=45.2

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      +...+||+||+.++.+++.+|| ++|..||+.|+   +||..||+.+|+++..
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg---TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG---NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS---SCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence            3467999999999999999999 79999999999   8999999999998764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.34  E-value=5.8e-07  Score=69.04  Aligned_cols=52  Identities=15%  Similarity=0.310  Sum_probs=45.3

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhCC---CChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763            1 MKERQRWRAEEDALLRAYVKQYGP---KEWSFVSQRMNTPLNRDAKSCLERWKNYLKP   55 (350)
Q Consensus         1 ~kkkg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p   55 (350)
                      |-....||.+||++|..++..|+.   ..|..||..|+   +||..+|+.||...+..
T Consensus         5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~---gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG---SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT---TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC---CCCHHHHHHHHHHHHhc
Confidence            345578999999999999999974   46999999999   89999999999987653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.33  E-value=1.9e-07  Score=94.48  Aligned_cols=46  Identities=17%  Similarity=0.361  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      ..||.+|-.++++.+.+||.+|..||..+++||..||+++|..+.+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999875433

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.22  E-value=9.2e-07  Score=67.91  Aligned_cols=48  Identities=15%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      ...||.+|+.+|..++..|+    ++|..||..|||||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            45799999999999999998    4699999999999999999999988544

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.19  E-value=1.4e-06  Score=64.26  Aligned_cols=47  Identities=15%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhh-cCCCCChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKH--------GNK-WKKIAA-EVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~--------G~~-W~~IA~-~lpgRT~~q~rnRW~~~l~  105 (350)
                      +.+||.|||..|++.|..|        |+. |..++. .+|++|-.+||+||...++
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            4689999999999999999        444 999999 8999999999999987653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.07  E-value=1.2e-05  Score=77.20  Aligned_cols=103  Identities=17%  Similarity=0.285  Sum_probs=82.0

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhh-------hhhhc-------------------------
Q 018763            5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLE-------RWKNY-------------------------   52 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~-------Rw~n~-------------------------   52 (350)
                      +.||..+...++.++.+||..+|..||..|+   ++|...++.       ||..+                         
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~---~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~  187 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE---GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK  187 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST---TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999998   799877632       22100                         


Q ss_pred             ---------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhh------------cCCCCChhhhHH
Q 018763           53 ---------------L---KPGIKKGSLTDEEQHLVIHLQAKHGN----KWKKIAA------------EVPGRTAKRLGK   98 (350)
Q Consensus        53 ---------------L---~p~i~kg~WT~EED~~Li~lv~~~G~----~W~~IA~------------~lpgRT~~q~rn   98 (350)
                                     |   .+..++..||++||..|+-.+.+||-    +|..|..            ++..||+.+|..
T Consensus       188 ~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~r  267 (304)
T 1ofc_X          188 ALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQR  267 (304)
T ss_dssp             HHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHH
T ss_pred             HHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                           0   01223457999999999999999994    6999962            446799999999


Q ss_pred             HHHHHHHHHHHh
Q 018763           99 WWEVFKEKQQRE  110 (350)
Q Consensus        99 RW~~~l~k~~~~  110 (350)
                      |.+++++-..+.
T Consensus       268 Rc~tLi~~iekE  279 (304)
T 1ofc_X          268 RCNTLITLIERE  279 (304)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876554

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=2.8e-05  Score=57.76  Aligned_cols=51  Identities=14%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCChhhhHHHHHHHHH
Q 018763           55 PGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAA-EVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        55 p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~-~lpgRT~~q~rnRW~~~l~  105 (350)
                      |.+....||++|-.+..+.+.+||.+|..|++ .|++||..+|...|...++
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk   56 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK   56 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence            56777899999999999999999999999999 6899999999988865443

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.77  E-value=2.9e-05  Score=61.61  Aligned_cols=51  Identities=10%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018763           61 SLTDEEQHLVIHLQAKHGN---KWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~G~---~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      -||.|||..|+..+++.|.   .|..||+.|.+|+.+||++||+.+++-.+...
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~   88 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC   88 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence            5999999999999999986   79999999999999999999999998876554

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.63  E-value=1.4e-05  Score=61.13  Aligned_cols=44  Identities=25%  Similarity=0.323  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chhhhhhcCCCCChhhhHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGN----KWKKIAAEVPGRTAKRLGKWWEV  102 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~----~W~~IA~~lpgRT~~q~rnRW~~  102 (350)
                      .+.||.+|+++|-.+...|+.    +|.+||..|||||..+|+.+|..
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL   67 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence            457999999999999999984    69999999999999999998853

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.76  E-value=8.6e-06  Score=61.29  Aligned_cols=47  Identities=11%  Similarity=0.261  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763           61 SLTDEEQHLVIHLQAKHGN---KWKKIAAEVPGRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~G~---~W~~IA~~lpgRT~~q~rnRW~~~l~k~~  108 (350)
                      .||.|||..|+..+++-|.   .|..||..+ +||++||.+||..+++-.+
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~   65 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFE   65 (70)
Confidence            5999999999999999997   799999999 9999999999999887543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.60  E-value=5.7e-05  Score=76.49  Aligned_cols=47  Identities=23%  Similarity=0.497  Sum_probs=43.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      ...+||.+|-.++.+++.+|| ++|..||..|+   +||..||+.+|.++-
T Consensus       379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg---TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG---NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS---SCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence            457999999999999999999 79999999999   799999999998653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.56  E-value=0.00015  Score=58.02  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=51.9

Q ss_pred             hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCC-----CCChhhhHHHHHHHHHHHHHhh
Q 018763           47 ERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVP-----GRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        47 ~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lp-----gRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      +-|..+|..    ..||.||.+.|++|++.|+-+|..|+..+.     +||-.++|.||..+.++.....
T Consensus        22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            345566653    689999999999999999999999999773     7999999999999998876553

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.52  E-value=2.6e-05  Score=59.69  Aligned_cols=43  Identities=14%  Similarity=0.368  Sum_probs=38.7

Q ss_pred             CCCcHHHHHHHHHHHHHhCC---CChhhhhHHhCCCCCCChhhhhhhhh
Q 018763            5 QRWRAEEDALLRAYVKQYGP---KEWSFVSQRMNTPLNRDAKSCLERWK   50 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~~~Rt~~qCr~Rw~   50 (350)
                      ..||.+|+++|..++..|+.   ..|.+||..||   |||..+|+.+|.
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp---GKT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK---GRTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC---SSCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC---CCCHHHHHHHHH
Confidence            47999999999999999964   36999999999   899999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.52  E-value=0.00011  Score=54.54  Aligned_cols=46  Identities=15%  Similarity=0.338  Sum_probs=40.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhH-HhCCCCCCChhhhhhhhhhc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQ-RMNTPLNRDAKSCLERWKNY   52 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~~~Rt~~qCr~Rw~n~   52 (350)
                      +...||+||-.+..+++.+|| .+|..|++ .|+   +|+..||...|...
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~---~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP---NKETGELITFYYYW   54 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT---TSCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC---CCcHHHHHHHHhcc
Confidence            346899999999999999999 68999999 488   89999999988653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.44  E-value=3.6e-05  Score=60.21  Aligned_cols=52  Identities=23%  Similarity=0.602  Sum_probs=41.8

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCC---------CChhhhhHHhCC-CCCCChhhhhhhhhhcc
Q 018763            2 KERQRWRAEEDALLRAYVKQYGP---------KEWSFVSQRMNT-PLNRDAKSCLERWKNYL   53 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~---------~~W~~IA~~l~~-~~~Rt~~qCr~Rw~n~L   53 (350)
                      ++...||.+|-..|+++...+..         .-|..||..|.. +..||+.||+.+|.|..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            45679999999999999976421         159999999842 34799999999998754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.31  E-value=0.00033  Score=53.07  Aligned_cols=47  Identities=15%  Similarity=0.246  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNKWKKIAA-EVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~W~~IA~-~lpgRT~~q~rnRW~~~l~  105 (350)
                      ...||++|-.+..+.+..||.+|..|++ .|++||..+|...|....+
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk   55 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT   55 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcC
Confidence            4579999999999999999999999999 5999999999998875433

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.27  E-value=0.00029  Score=56.40  Aligned_cols=48  Identities=15%  Similarity=0.325  Sum_probs=41.8

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCC--CCCChhhhhhhhhhcc
Q 018763            5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP--LNRDAKSCLERWKNYL   53 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~--~~Rt~~qCr~Rw~n~L   53 (350)
                      ..||.||++.|.+++.+|+ -.|..|+.++...  .+||..+.++||..+.
T Consensus        31 ~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999 5799999999411  2799999999998754

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.25  E-value=0.00032  Score=56.18  Aligned_cols=44  Identities=14%  Similarity=0.332  Sum_probs=40.6

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      ...||++|..++.+....|| .+|..|++.|+   +||..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~---~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE---RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC---CCCHHHHHHHHhc
Confidence            35799999999999999999 78999999999   8999999998864

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.24  E-value=0.00028  Score=56.49  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFK  104 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l  104 (350)
                      ...||++|..+..+.+..||.+|..|+..||+||..+|-..|...+
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K   88 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   88 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence            3579999999999999999999999999999999999998876543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.23  E-value=0.00045  Score=52.32  Aligned_cols=44  Identities=23%  Similarity=0.441  Sum_probs=40.2

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhH-HhCCCCCCChhhhhhhhhh
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQ-RMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      ...||++|-.+..+++.+|| .+|..|+. .|+   +|+..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~---~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLP---WKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS---SSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC---CCCHHHHHHHHHh
Confidence            45899999999999999999 68999999 588   8999999998874

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.10  E-value=0.00039  Score=54.27  Aligned_cols=53  Identities=11%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------chhhhhhcC----CCCChhhhHHHHHHHHHHHHHhh
Q 018763           59 KGSLTDEEQHLVIHLQAKHGN----------KWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQ  111 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~----------~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~  111 (350)
                      ...||.+|...||+++..+..          .|..||..|    -.||+.||+++|.++.+.....+
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k   70 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK   70 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999976431          499999987    37999999999999999876543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.70  E-value=0.0033  Score=49.82  Aligned_cols=43  Identities=21%  Similarity=0.502  Sum_probs=39.4

Q ss_pred             CCcHHHHHHHHHHHHHhCC--CChhhhhHHhCCCCCCChhhhhhhhhh
Q 018763            6 RWRAEEDALLRAYVKQYGP--KEWSFVSQRMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      -||.|||..+....++.|.  .-|..||+.++   +|++.|..+||+.
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~---Nks~nqV~~RFq~   79 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG---NKTPVEVSHRFRE   79 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS---SCCHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHc---cCCHHHHHHHHHH
Confidence            4999999999999999975  36999999998   8999999999986

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.61  E-value=0.0078  Score=59.11  Aligned_cols=104  Identities=14%  Similarity=0.283  Sum_probs=80.5

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc-------------------------------
Q 018763            5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL-------------------------------   53 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L-------------------------------   53 (350)
                      +.||.-+=..++.++.+||-.+-..||..|.+  ++|...++ +|.+++                               
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~--~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~  200 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAP--GKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ  200 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCC--SSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHcc--CCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999998899999999962  57776654 332211                               


Q ss_pred             -----------C----------CCC-CCCCCCHHHHHHHHHHHHHhC----Cchhhhhhc------------CCCCChhh
Q 018763           54 -----------K----------PGI-KKGSLTDEEQHLVIHLQAKHG----NKWKKIAAE------------VPGRTAKR   95 (350)
Q Consensus        54 -----------~----------p~i-~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~------------lpgRT~~q   95 (350)
                                 +          ++. ++..||.+||..|+-++.+||    ++|..|-..            +..||+..
T Consensus       201 ~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~E  280 (374)
T 2y9y_A          201 EALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVE  280 (374)
T ss_dssp             HHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHH
T ss_pred             HHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence                       0          111 344699999999999999999    469999432            36799999


Q ss_pred             hHHHHHHHHHHHHHhh
Q 018763           96 LGKWWEVFKEKQQREQ  111 (350)
Q Consensus        96 ~rnRW~~~l~k~~~~~  111 (350)
                      |..|++.+++-..+..
T Consensus       281 L~rRc~tLi~~IeKE~  296 (374)
T 2y9y_A          281 LARRGNTLLQCLEKEF  296 (374)
T ss_dssp             HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998876554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.44  E-value=0.012  Score=52.79  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=70.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHhC--CCChhhhhHH--hCCCCCCChhhhhhhhh-------hccC-----------------
Q 018763            3 ERQRWRAEEDALLRAYVKQYG--PKEWSFVSQR--MNTPLNRDAKSCLERWK-------NYLK-----------------   54 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg--~~~W~~IA~~--l~~~~~Rt~~qCr~Rw~-------n~L~-----------------   54 (350)
                      ....||..|-..|+.++.+||  ...|..|+..  +.   +++......-+.       ..++                 
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~---~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~   82 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV---DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK   82 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT---TSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            456899999999999999999  5679999875  33   566555332111       0000                 


Q ss_pred             -----------------------------------------------CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhh
Q 018763           55 -----------------------------------------------PGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAA   86 (350)
Q Consensus        55 -----------------------------------------------p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~   86 (350)
                                                                     +......||.+||..|+..+.+|| ++|..|-.
T Consensus        83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A           83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence                                                           000122499999999999999999 88999865


Q ss_pred             --cC----------CC--CChhhhHHHHHHHHHHHH
Q 018763           87 --EV----------PG--RTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        87 --~l----------pg--RT~~q~rnRW~~~l~k~~  108 (350)
                        .+          ..  +++..+..|...+++-..
T Consensus       163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~  198 (211)
T 4b4c_A          163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS  198 (211)
T ss_dssp             CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred             ChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence              21          12  345678999887776543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.17  E-value=0.0034  Score=47.21  Aligned_cols=44  Identities=16%  Similarity=0.585  Sum_probs=38.8

Q ss_pred             CCcHHHHHHHHHHHHHhCC--CChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            6 RWRAEEDALLRAYVKQYGP--KEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      .||.|||..+...+++-|.  .-|..||+.++    |++.|+.+||+..+
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln----ks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKLD----KNPNQVSERFQQLM   61 (70)
Confidence            5999999999999999985  25999998885    99999999998754

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.01  E-value=0.08  Score=42.16  Aligned_cols=48  Identities=15%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCC--CCCChhhhhhhhhhcc
Q 018763            5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP--LNRDAKSCLERWKNYL   53 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~--~~Rt~~qCr~Rw~n~L   53 (350)
                      ..||.||...|.+++.+|+ -.|..|+.+....  ..||..+..+||..+.
T Consensus        31 ~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999 5699999998521  2699999999998764

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.91  E-value=0.13  Score=38.19  Aligned_cols=50  Identities=18%  Similarity=0.197  Sum_probs=40.9

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCC--hhhhhHHhCCCCCCChhhhhhhhhhc
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKE--WSFVSQRMNTPLNRDAKSCLERWKNY   52 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~--W~~IA~~l~~~~~Rt~~qCr~Rw~n~   52 (350)
                      |.|-.||+|..+...++|.+.|...  +..|.+.|+. .+.|..++..+.+.|
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v-~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNV-DKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCC-TTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCC-CCCCHHHHHHHHHHH
Confidence            5677999999999999999999332  7899999974 378988888776654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=91.40  E-value=0.45  Score=35.28  Aligned_cols=50  Identities=16%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc---hhhhhhcC--CCCChhhhHHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGNK---WKKIAAEV--PGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~~---W~~IA~~l--pgRT~~q~rnRW~~~l~k~  107 (350)
                      .+-.||+|.-...++++..+|..   +..|-+.|  +|.|..+|+++.+.+....
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            45579999999999999999955   77888865  7899999999988765443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=90.95  E-value=0.32  Score=46.51  Aligned_cols=48  Identities=25%  Similarity=0.346  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~  107 (350)
                      +.||..|...++.++.+||. +|..||..|+|+|...|+.++..+....
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            46999999999999999995 6999999999999999999888888765

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.02  E-value=0.25  Score=46.43  Aligned_cols=27  Identities=33%  Similarity=0.613  Sum_probs=25.1

Q ss_pred             CCcHHHHHHHHHHHHHhCCCChhhhhH
Q 018763            6 RWRAEEDALLRAYVKQYGPKEWSFVSQ   32 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~~~W~~IA~   32 (350)
                      .|+.+||..|...|.+||.++|..|-.
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            499999999999999999999999943

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=83.61  E-value=1.2  Score=39.40  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---Cchhhhhh--cCCCCChhhhHHHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHG---NKWKKIAA--EVPGRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G---~~W~~IA~--~lpgRT~~q~rnRW~~~l~k~~  108 (350)
                      .-..||..|-..|+..+.+||   .+|..|+.  .|.++|...|+..+..++..-.
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~   61 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI   61 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            345799999999999999999   56999986  4789999999998887776543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.97  E-value=10  Score=33.04  Aligned_cols=89  Identities=20%  Similarity=0.336  Sum_probs=69.3

Q ss_pred             hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHhhhhh---hHHHHHH
Q 018763          229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKM--EEIEAKMKALRDEQRATLD---RIEAEYR  303 (350)
Q Consensus       229 ~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~--ee~e~~~~~l~~e~~~~~~---~~e~~y~  303 (350)
                      .+..+-..|+||.+--...-.+|..--=.+-.|--||+.||..+.+..-  -|.+++|.+|.+|=...-.   +++.|-+
T Consensus        42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r  121 (168)
T 3o0z_A           42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK  121 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888999999999999999999888999999999999988777543  7889999999988655444   4444433


Q ss_pred             ---HHHhhhhchHHHHH
Q 018763          304 ---EQIAGLRRDAEAKE  317 (350)
Q Consensus       304 ---e~~~~l~rdae~ke  317 (350)
                         |.|+.|......-|
T Consensus       122 ~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A          122 EAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence               56666666555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-12
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-04
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-12
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-05
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	9e-12
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-04
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-11
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-11
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-08
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-04
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-06
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-04
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-05
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-05
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	5e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-04
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-04
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-04
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	0.004

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          + RW  EED  L+  V+Q G  +W  ++  +    NR    C  RW+  L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 59 KGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAK 94
          K   T EE   +  L  ++G + WK IA  +P RT  
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDV 37

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (144), Expect = 3e-12
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKE-----WSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK 58
          +  +  EED  +   V++   +      +  +S  +    N    S   R++ YL   ++
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP---NHTGNSIRHRFRVYLSKRLE 57

Query: 59 KGSLTDEEQHLVIHLQAKHGN 79
               D+   LV         
Sbjct: 58 YVYEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 59  KGSLTDEEQHLVIHLQAKHGNK------WKKIAAEVPGRTAKRLGKWW 100
           K S TDEE   ++ +  K+  +      + +I+  VP  T   +   +
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF 48

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (139), Expect = 9e-12
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
          +  W  EED  L   V++YGPK WS +++ +     R  K C ERW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 57 IKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAK 94
          + KG  T EE   +I L  K+G  +W  IA  + GR  K
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGK 39

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 7/83 (8%)

Query: 5  QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRD-AKSCLERWKNYLKPGIKKGSL- 62
          + +   E   L   V+  G   W  V  R     +        ++WK  +          
Sbjct: 1  RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 63 -----TDEEQHLVIHLQAKHGNK 80
                 +    V+   A    +
Sbjct: 61 RGEPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 3e-11
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI 57
          +Q+W  EE   ++A V++YG   W+ +S+      NR A    +RW+   + G+
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGM 54

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 7e-10
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54
          RQ W  EED  LR+ V++YG   WS +        NR +    +RW+   K
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN-NRTSVMLKDRWRTMKK 51

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 6e-08
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 6  RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDE 65
          +W  EE  L    + ++  + W+ +S+ + +   R         + Y K  +K G   + 
Sbjct: 4  KWTIEEKELFEQGLAKF-GRRWTKISKLIGS---RTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 66 EQH 68
             
Sbjct: 60 PNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  TDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDS 114
           T EE+ L     AK G +W KI+  +  RT  ++  +   + + + +   D 
Sbjct: 6   TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDK 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 7  WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY 52
          W A+E+  L   V   G   W  V+ +M T   +  + C + +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCT---KTKEECEKHYMKY 46

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 5e-06
 Identities = 6/49 (12%), Positives = 19/49 (38%)

Query: 58  KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK 106
                +++E+        +H   +  IA+ +  +T      ++ + K+ 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 2  KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54
          +    W  +E    R    Q+    +  ++  +     +    C+  +    K
Sbjct: 15 QVMNMWSEQEKETFREKFMQHPKN-FGLIASFLER---KTVAECVLYYYLTKK 63

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 5  QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59
          + W A+E+      +  Y        +        R  +   + +   L   IK 
Sbjct: 2  RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 59  KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100
           K S T+EE  ++     + GN+W +IA  +PGRT   +   W
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 42

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 4  RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54
          +  W  EED ++    K+ G + W+ +++ +     R   +    W + ++
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLP---GRTDNAIKNHWNSTMR 47

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 2  KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54
          K   RW  EE  L    +++YG  ++  +S  +     +        + NY +
Sbjct: 3  KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN---KSVVQVKNFFVNYRR 51

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 8/49 (16%), Positives = 25/49 (51%)

Query: 63  TDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 111
           T EEQ L +    K+G  ++ I+  +  ++  ++  ++  ++ +   ++
Sbjct: 9   TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDE 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 2  KERQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWK 50
             + W   +  LL   ++QY       W  +++ +    ++  + C+ R+K
Sbjct: 10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP---SKSKEDCIARYK 58

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 54 KPGIKKGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAK 94
          +    +   T  +Q L+     ++     + W KIA  VP ++ +
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKE 51

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 7  WRAEEDALLRAYVKQYGPKE--WSFVSQRMNTPLNRDAKSCLERWKNYLK 54
          W  E D ++    ++ G +   +S +SQ++    N+       R++  ++
Sbjct: 36 WTREADRVILTMCQEQGAQPHTFSVISQQLG---NKTPVEVSHRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.57
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.57
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.56
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.45
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.39
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.36
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.35
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.32
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.31
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.29
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.28
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.24
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.2
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.15
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.13
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.12
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.99
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.99
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.99
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.87
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.59
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.93
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.88
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.86
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.83
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.92
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.77
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.09
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.02
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.51
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.26
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.82
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	86.95

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.1e-19  Score=142.80  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=64.3

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCC-----ChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHH
Q 018763            4 RQRWRAEEDALLRAYVKQYGPK-----EWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAK   76 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~-----~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~   76 (350)
                      |+.||+|||++|+++|.+||..     +|..||+.|+   |||++||++||+++|+|.++++.||.+||.+|+.....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp---gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP---NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST---TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC---CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999864     4999999999   89999999999999999999999999999988765433

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.9e-18  Score=121.22  Aligned_cols=51  Identities=41%  Similarity=0.860  Sum_probs=49.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPG   56 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~   56 (350)
                      .||+||+|||++|+++|.+||.++|..||+.|+   +||+.||++||.++|+|+
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST---TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC---CCCHHHHHHHHHhhCCCC
Confidence            589999999999999999999889999999999   899999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1e-17  Score=118.57  Aligned_cols=50  Identities=34%  Similarity=0.805  Sum_probs=48.1

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCC
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPG   56 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~   56 (350)
                      |++||+|||++|+.+|.+||.++|..||..|+   +||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST---TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC---CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999999999999999   899999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.2e-16  Score=110.30  Aligned_cols=47  Identities=32%  Similarity=0.648  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      +++||+|||++|+++|.+||++|+.||.+|||||+++|++||+.+++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998864

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.57  E-value=6.7e-16  Score=120.08  Aligned_cols=76  Identities=17%  Similarity=0.340  Sum_probs=61.4

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCC-CCCCChhhhhhhhhhcc-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 018763            5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNT-PLNRDAKSCLERWKNYL-----KPGIKKGSLTDEEQHLVIHLQAKHG   78 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-~~~Rt~~qCr~Rw~n~L-----~p~i~kg~WT~EED~~Li~lv~~~G   78 (350)
                      .+||+|||+.|+.+|.+||.++|..|++.+.. ..+||+.||++||+|+|     ++..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            47999999999999999999999999987521 23899999999999998     4677889999877   445555555


Q ss_pred             Cchhh
Q 018763           79 NKWKK   83 (350)
Q Consensus        79 ~~W~~   83 (350)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.1e-16  Score=110.71  Aligned_cols=55  Identities=29%  Similarity=0.663  Sum_probs=49.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK   58 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~   58 (350)
                      ||++||+|||++|+.+|.+||.++|..|++.++. .+||+.||++||+|+++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~-~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPF-VNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC-SSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCC-CCcCHHHHHHHHHHHhcCCCC
Confidence            6889999999999999999999899999998431 189999999999999998764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=8.5e-16  Score=109.41  Aligned_cols=49  Identities=33%  Similarity=0.575  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           57 IKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        57 i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      +.+|+||++||++|+++|.+|| ++|..||+.|+|||+.||++||+++|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            5789999999999999999999 689999999999999999999998765

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.2e-14  Score=102.49  Aligned_cols=48  Identities=29%  Similarity=0.482  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      ++.||.+||++|+++|.+|| ++|..||..|+|||+.||++||+++|..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999998853

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=103.48  Aligned_cols=50  Identities=34%  Similarity=0.573  Sum_probs=44.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      ||++||+|||+.|+++|.+||.++|..|+..++. .+||+.||++||+|+.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~-~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF-NNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC-SSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCC-CCCCHHHHHHHHHHHH
Confidence            6899999999999999999999899999987531 2799999999999865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.9e-14  Score=99.27  Aligned_cols=45  Identities=24%  Similarity=0.549  Sum_probs=42.9

Q ss_pred             CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      .||.|||++|+++|.+||.++|..||+.|+   +||+.||+.||.+|.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~---~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC---TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT---TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC---CCCHHHHHHHHHHhC
Confidence            599999999999999999999999999999   899999999999863

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=5.2e-14  Score=97.98  Aligned_cols=47  Identities=19%  Similarity=0.575  Sum_probs=44.0

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      |.+||+|||++|+++|.+|| .+|..||..|+   |||+.||+.||+++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~---gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLP---GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCT---TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHHhHcC---CCCHHHHHHHHHHHcC
Confidence            67999999999999999999 57999999999   8999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-13  Score=97.64  Aligned_cols=48  Identities=27%  Similarity=0.361  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-chhhhhhcC--CCCChhhhHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEV--PGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~l--pgRT~~q~rnRW~~~l~  105 (350)
                      ++++||+|||+.|+++|.+||. +|+.|+..+  .+||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 899999874  59999999999999864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.3e-13  Score=97.58  Aligned_cols=50  Identities=30%  Similarity=0.374  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-Cchhhhhhc--CCCCChhhhHHHHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHG-NKWKKIAAE--VPGRTAKRLGKWWEVFKEKQ  107 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~--lpgRT~~q~rnRW~~~l~k~  107 (350)
                      ++++||+|||+.|+++|.+|| ++|..|+..  |++||+.||++||+++++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999 589999987  56999999999999988764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1.6e-13  Score=107.15  Aligned_cols=55  Identities=24%  Similarity=0.437  Sum_probs=49.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hhhhhhcCCCCChhhhHHHHHHHHHHHHHhhhc
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNK------WKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKD  113 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~------W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~  113 (350)
                      +++||+|||++|+++|.+||..      |..||..|||||++||++||+++|.+..+....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~   61 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYE   61 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEEC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCC
Confidence            5799999999999999999964      999999999999999999999999998755433

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.7e-13  Score=97.87  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=47.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      ...||.|||.+|++++..||.+|..||.+||+||+.||++||+.++++..+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999999999999999999999999988876543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.6e-13  Score=98.74  Aligned_cols=57  Identities=21%  Similarity=0.465  Sum_probs=51.1

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCH
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTD   64 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~   64 (350)
                      ..+||+|||.+|+++|..|| .+|..||..|+   +||+.||+.||++++++..+.+.+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~---~Rt~~q~k~ry~~~~~~~~k~~~~~~   58 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG---SRTVLQVKSYARQYFKNKVKCGLDKE   58 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS---SSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            46899999999999999999 79999999999   89999999999999988776666543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.8e-13  Score=91.61  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHH
Q 018763           61 SLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVF  103 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~  103 (350)
                      .||.+||.+|+++|.+|| ++|..||..|++||+.||++||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.2e-12  Score=93.81  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=45.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhhcCCCCChhhhHHHHHHH
Q 018763           54 KPGIKKGSLTDEEQHLVIHLQAKHGN----KWKKIAAEVPGRTAKRLGKWWEVF  103 (350)
Q Consensus        54 ~p~i~kg~WT~EED~~Li~lv~~~G~----~W~~IA~~lpgRT~~q~rnRW~~~  103 (350)
                      .+...+++||.+||.+|+++|..||.    +|..||..|||||+.||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    599999999999999999999865

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.2e-12  Score=92.96  Aligned_cols=46  Identities=20%  Similarity=0.541  Sum_probs=42.4

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCC---ChhhhhHHhCCCCCCChhhhhhhhhh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPK---EWSFVSQRMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~---~W~~IA~~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      .++.||+|||++|+++|..||.+   +|..||..|+   +||+.||+.||+.
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~---~Rt~~qc~~R~~~   59 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP---SKSKEDCIARYKL   59 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS---SSCHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC---CCCHHHHHHHHHH
Confidence            56789999999999999999965   4999999999   8999999999974

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.20  E-value=1e-11  Score=91.07  Aligned_cols=49  Identities=22%  Similarity=0.397  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHGN----KWKKIAAEVPGRTAKRLGKWWEVFKEKQQ  108 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~----~W~~IA~~lpgRT~~q~rnRW~~~l~k~~  108 (350)
                      .+||.|||.+|++++..||.    +|..||..|||||+.||++||+.++....
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik   54 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK   54 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence            47999999999999999995    49999999999999999999988876644

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.15  E-value=1.4e-11  Score=90.37  Aligned_cols=44  Identities=16%  Similarity=0.446  Sum_probs=40.6

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCC---hhhhhHHhCCCCCCChhhhhhhhhh
Q 018763            5 QRWRAEEDALLRAYVKQYGPKE---WSFVSQRMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~~---W~~IA~~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      .+||+|||.+|.++|.+||.++   |..||..|+   +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~---gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE---GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST---TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC---CCCHHHHHHHHHH
Confidence            4799999999999999999764   999999999   8999999999954

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.5e-11  Score=96.83  Aligned_cols=72  Identities=10%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc---hhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763           39 NRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK---WKKIAAEVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        39 ~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~---W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      ..+..+...++.+..+.+.....||.|||.+|++.++++|.+   |..||+.|+|||++||++||+.+++-.+..
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~   87 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            456666667777778888888899999999999999999977   999999999999999999999999987654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.12  E-value=4.4e-11  Score=92.35  Aligned_cols=50  Identities=14%  Similarity=0.321  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCChhhhHHHHHHHHHHHHHh
Q 018763           61 SLTDEEQHLVIHLQAKHGN-KWKKIAAE----VPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~G~-~W~~IA~~----lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      +||.|||..|+++|.+||. +|..|++.    +++||+.||++||+++++.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            7999999999999999994 89999974    68999999999999999876533

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.3e-10  Score=84.06  Aligned_cols=48  Identities=23%  Similarity=0.505  Sum_probs=43.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      -..+||++||++|..++..|| .+|..||..|+   +||..||+.+|.++.+
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~---~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG---NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS---SCCHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC---CCCHHHHHHHHHHHHh
Confidence            346899999999999999999 78999999999   8999999999998753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.7e-11  Score=86.41  Aligned_cols=47  Identities=17%  Similarity=0.359  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      +..||++||.+|++++..||.+|..||..|+|||..||+++|..+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-10  Score=86.58  Aligned_cols=47  Identities=13%  Similarity=0.119  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHH
Q 018763           58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFK  104 (350)
Q Consensus        58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l  104 (350)
                      ...+||+|||.+|++++.+||.+|..||..|||||..||+++|....
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44679999999999999999999999999999999999999997543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.5e-10  Score=83.25  Aligned_cols=47  Identities=13%  Similarity=0.269  Sum_probs=42.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      ....||+|||++|.++|.+|| .+|..||..|+   +||..||+.+|....
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~---~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHP-KNFGLIASFLE---RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT---TSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence            346799999999999999999 68999999999   899999999998654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=2.1e-08  Score=78.58  Aligned_cols=46  Identities=20%  Similarity=0.457  Sum_probs=41.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHhCCCC--hhhhhHHhCCCCCCChhhhhhhhhh
Q 018763            3 ERQRWRAEEDALLRAYVKQYGPKE--WSFVSQRMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg~~~--W~~IA~~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      +...||.|||..|++.++++|+..  |..||+.|+   +|++.||+.||+.
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~---~Rs~~qvr~Rf~~   79 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG---NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS---SCCHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC---CCCHHHHHHHHHH
Confidence            346799999999999999999654  999999999   8999999999975

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=6.3e-06  Score=58.46  Aligned_cols=46  Identities=15%  Similarity=0.309  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhhc-CCCCChhhhHHHHHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHGNKWKKIAAE-VPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~~W~~IA~~-lpgRT~~q~rnRW~~~l~  105 (350)
                      ..||+||-.++.+.+..||.+|..|++. +|+||..+|.+.|....+
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~Kk   48 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT   48 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence            3699999999999999999999999985 699999999999875443

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=6.6e-06  Score=58.35  Aligned_cols=43  Identities=23%  Similarity=0.505  Sum_probs=39.3

Q ss_pred             CCcHHHHHHHHHHHHHhCCCChhhhhHH-hCCCCCCChhhhhhhhhhc
Q 018763            6 RWRAEEDALLRAYVKQYGPKEWSFVSQR-MNTPLNRDAKSCLERWKNY   52 (350)
Q Consensus         6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~-l~~~~~Rt~~qCr~Rw~n~   52 (350)
                      .||+||-.++.+++..|| .+|..|++. ++   +||..||...|.+.
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~---~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP---WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS---SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC---CCCHHHHHHHHHHH
Confidence            699999999999999999 799999986 57   89999999998764

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.8e-06  Score=58.80  Aligned_cols=46  Identities=24%  Similarity=0.386  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      +.||.+|+.+|.+++.+|.    ++|..||..+ |||..+|..|++.+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            5799999999999999996    4599999999 99999999999877644

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1e-05  Score=57.89  Aligned_cols=45  Identities=13%  Similarity=0.338  Sum_probs=39.7

Q ss_pred             CCCcHHHHHHHHHHHHHhCCC---ChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763            5 QRWRAEEDALLRAYVKQYGPK---EWSFVSQRMNTPLNRDAKSCLERWKNYL   53 (350)
Q Consensus         5 g~WT~EED~~L~~~V~kyg~~---~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L   53 (350)
                      ..||.+|+.+|..++.+|..+   .|..||..|+    |+..+|..||+.+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg----kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG----RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence            579999999999999999633   4999999996    99999999998643

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.92  E-value=0.00078  Score=48.49  Aligned_cols=50  Identities=18%  Similarity=0.206  Sum_probs=40.6

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhCCCCh--hhhhHHhCCCCCCChhhhhhhhhhc
Q 018763            2 KERQRWRAEEDALLRAYVKQYGPKEW--SFVSQRMNTPLNRDAKSCLERWKNY   52 (350)
Q Consensus         2 kkkg~WT~EED~~L~~~V~kyg~~~W--~~IA~~l~~~~~Rt~~qCr~Rw~n~   52 (350)
                      |.|-.||+|+.+++..+|..+|...|  ..|.+.|+. .++|..|++.+-+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v-~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNV-DKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCC-TTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCC-CCCCHHHHHHHHHHH
Confidence            45778999999999999999995444  588888863 388999998877655

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.0013  Score=43.66  Aligned_cols=44  Identities=27%  Similarity=0.419  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhhcC---CCCChhhhHHHHHHH
Q 018763           60 GSLTDEEQHLVIHLQAKHGNKWKKIAAEV---PGRTAKRLGKWWEVF  103 (350)
Q Consensus        60 g~WT~EED~~Li~lv~~~G~~W~~IA~~l---pgRT~~q~rnRW~~~  103 (350)
                      ..||.||..-|+.-|+.||+.|..|-=.+   +||+..++-.+|..+
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            46999999999999999999999996433   899999999988765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00059  Score=48.41  Aligned_cols=48  Identities=19%  Similarity=0.389  Sum_probs=40.1

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCC--------ChhhhhH-HhCCCCCCChhhhhhhhhhccC
Q 018763            4 RQRWRAEEDALLRAYVKQYGPK--------EWSFVSQ-RMNTPLNRDAKSCLERWKNYLK   54 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~--------~W~~IA~-~l~~~~~Rt~~qCr~Rw~n~L~   54 (350)
                      |..||.+||+.|.++|..|...        =|...++ .++   .+|..+-++||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~---~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT---QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS---SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhc
Confidence            5689999999999999998422        2988885 455   7999999999998874

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0012  Score=46.68  Aligned_cols=47  Identities=11%  Similarity=0.259  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-------Cc--hhhhhh-cCCCCChhhhHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHG-------NK--WKKIAA-EVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G-------~~--W~~IA~-~lpgRT~~q~rnRW~~~l~  105 (350)
                      +.+||.+||..|++.|..+.       ++  |..+++ .++.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999873       22  999995 6799999999999987653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0058  Score=40.49  Aligned_cols=47  Identities=21%  Similarity=0.293  Sum_probs=42.6

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018763            4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN   51 (350)
Q Consensus         4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n   51 (350)
                      |+.||.||-.-|...|++|| +.|+.|-=.+|.-.||+..+....|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            57899999999999999999 789999988887779999999888875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.02  E-value=0.006  Score=43.67  Aligned_cols=48  Identities=17%  Similarity=0.113  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchh---hhhhc--CCCCChhhhHHHHHHHHHH
Q 018763           59 KGSLTDEEQHLVIHLQAKHGNKWK---KIAAE--VPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        59 kg~WT~EED~~Li~lv~~~G~~W~---~IA~~--lpgRT~~q~rnRW~~~l~k  106 (350)
                      +-.||+|+-..+++++..+|..|.   .|...  ++|+|..||+.+-+.+.-+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            456999999999999999998874   56554  5899999999998776543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.016  Score=41.79  Aligned_cols=50  Identities=18%  Similarity=0.385  Sum_probs=43.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHhC---CCChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763            3 ERQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP   55 (350)
Q Consensus         3 kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p   55 (350)
                      .-+.|+++|-++|-.++.-..   .+-|..||..++   .|++..|...|...+..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG---tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG---SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT---TSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc---cCCHHHHHHHHHhCccc
Confidence            346899999999999998764   456999999999   79999999999987654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.046  Score=39.35  Aligned_cols=50  Identities=14%  Similarity=0.163  Sum_probs=42.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCc----hhhhhhcCCCCChhhhHHHHHHHHH
Q 018763           56 GIKKGSLTDEEQHLVIHLQAKHGNK----WKKIAAEVPGRTAKRLGKWWEVFKE  105 (350)
Q Consensus        56 ~i~kg~WT~EED~~Li~lv~~~G~~----W~~IA~~lpgRT~~q~rnRW~~~l~  105 (350)
                      ....+.|+++|-.+|-.++..+..+    |..+|..+..||+..|..+|..-++
T Consensus         5 ~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             cCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            3456789999999999999987643    9999999999999999988876543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.82  E-value=0.31  Score=38.97  Aligned_cols=56  Identities=23%  Similarity=0.315  Sum_probs=45.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-Cc---hhhhhh------------cCCCCChhhhHHHHHHHHHHHHHh
Q 018763           55 PGIKKGSLTDEEQHLVIHLQAKHG-NK---WKKIAA------------EVPGRTAKRLGKWWEVFKEKQQRE  110 (350)
Q Consensus        55 p~i~kg~WT~EED~~Li~lv~~~G-~~---W~~IA~------------~lpgRT~~q~rnRW~~~l~k~~~~  110 (350)
                      ++.++..+|.|||.-|+-.+.+|| ++   |..|-.            +|..||+..+..|.+++++-..+.
T Consensus        45 ~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          45 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            344555799999999999999999 33   888742            226799999999999999887665

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.95  E-value=0.79  Score=30.89  Aligned_cols=46  Identities=26%  Similarity=0.400  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763           61 SLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEK  106 (350)
Q Consensus        61 ~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k  106 (350)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+...+..-++
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~r   47 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER   47 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            499999999999999999 5799999999999999998877666554