Citrus Sinensis ID: 018774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDIDFPQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mpsngkkegtnvpllqdsastnvpllqgsastapspddsagtlTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGqafggkkyYMLGVYMQRSWIVLFICCVLLlplyvfaspvlkllgqpddvaelSGVVSLwllpvhfsfafqfplQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGyvacggcprtwtgfsmEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYsisgdldcnwclllytdidfpq
Flexible Loop (DISEMBL)
mpsngkkegtnvpllqdSASTNVPLLQGSastapspddsaGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDIDFPQ
Low Complexity Region (SEG)
MPSNGKKEGTNVPLLQDSASTNVPLLQGsastapspddsaGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIawvslasllvhllvtwlfvYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDIDFPQ
Disordered region (IsUnstruct)
******************************************LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID***
Disordered Region (DISOPRED)
******************************************LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDI****
Disordered Region (DISEMBL)
**********NVPLLQDSASTNVPLLQ**************TLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDIDFPQ
Disordered Region (DISPRO)
**************************************SAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDIDFPQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDIDFPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.877	0.605	0.386	3e-58
Q9SIA4	476	MATE efflux family protei	no	no	0.828	0.609	0.347	3e-38
Q8GXM8	476	MATE efflux family protei	no	no	0.774	0.569	0.330	7e-38
Q9SIA5	476	MATE efflux family protei	no	no	0.788	0.579	0.324	3e-37
Q9SIA3	476	MATE efflux family protei	no	no	0.768	0.565	0.337	7e-37
Q9LUH3	469	MATE efflux family protei	no	no	0.802	0.599	0.325	2e-36
Q9LUH2	477	MATE efflux family protei	no	no	0.888	0.651	0.292	7e-36
Q9SIA1	477	MATE efflux family protei	no	no	0.84	0.616	0.304	2e-30
Q8RWF5	483	MATE efflux family protei	no	no	0.825	0.598	0.309	7e-30
Q8K0H1	567	Multidrug and toxin extru	yes	no	0.834	0.514	0.273	3e-27

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/326 (38%), Positives = 193/326 (59%), Gaps = 19/326 (5%)

Query: 17  DSASTNVPLL-------QGSASTAPSPDD----SAGTLTRRFWI-----ESKKLWHIVGP 60
            S  T  PLL       Q +  ++P  ++       T+T R+W+     ESK LW + G 
Sbjct: 2   SSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGA 61

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
           +I   + +Y +  +T  F GHLG L+LA  SIA   +    +G++LGMASA++T+CGQA+
Sbjct: 62  SIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAY 121

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G ++Y  +G+  QR+ ++     V L  LY ++ P+LK +GQ   +A    + +  ++P 
Sbjct: 122 GARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQ 181

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
            ++FA   P+QRFLQ+Q     +A++SL   L+H L+TWL    +  GL+G A+ LSFSW
Sbjct: 182 IYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSW 241

Query: 241 WVLIF--GMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILM 298
           W+L+   GM+  +    C  TWTGFS  AF  +W + KL+VAS VMLCLE WY + L+++
Sbjct: 242 WLLVAVNGMY-ILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVII 300

Query: 299 TGNLQNAKIAVDALSICMSINGWESQ 324
           +G L N  I++DA+SICM    W+ Q
Sbjct: 301 SGLLSNPTISLDAISICMYYLNWDMQ 326

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 6/296 (2%)

Query: 24  PLLQGSASTAPSPDD-SAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL 82
           P L       P  D   +G +T    +E KK+  +  P     +A Y + VI+   AGH 
Sbjct: 4   PFLLQDEHLVPCKDTWKSGQVT----VELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHN 59

Query: 83  GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFIC 142
           G+L+L+ +++A +      F +L G+A ALETLCGQA+G K+Y  +G Y   +       
Sbjct: 60  GELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPI 119

Query: 143 CVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMV 202
           CVL+  L+++   +L  LGQ  D++ ++G  +LWL+P  F+ AF  PL RFL +Q   + 
Sbjct: 120 CVLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLP 179

Query: 203 IAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVA-CGGCPRTWT 261
           + + +L +LL H+ V W FVY   LG  G A+ +S S+W  +  +  YV     C +T  
Sbjct: 180 LLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRV 239

Query: 262 GFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMS 317
             S +  S + +F    V S  M+CLE W + +LIL +G L N K+    LSIC++
Sbjct: 240 FVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLT 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/272 (33%), Positives = 150/272 (55%), Gaps = 1/272 (0%)

Query: 49  IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGM 108
           +E KK+  +  P     +A Y + VI+   AGH+G+LELA +++A +      F ++ G+
Sbjct: 26  VELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIMFGL 85

Query: 109 ASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAE 168
             ALETLCGQA+G ++Y  +G Y   +       C ++  L+++   +L  LGQ  D++ 
Sbjct: 86  VGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISR 145

Query: 169 LSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG 228
           ++G  SLWL+P  F+ A   PL RFL +Q   + + + ++ +LL H+ V W  V+ + LG
Sbjct: 146 VAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLG 205

Query: 229 LIGTAITLSFSWWVLIFGMFGYVA-CGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCL 287
             G AI +S S+W     +  +V     C +T    S +  S + ++ +  V S  ++CL
Sbjct: 206 SNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLICL 265

Query: 288 ENWYYRVLILMTGNLQNAKIAVDALSICMSIN 319
           E W + +LIL +G L N K+    LSIC++I 
Sbjct: 266 EWWLFELLILCSGLLPNPKLETSVLSICLTIG 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 148/277 (53%), Gaps = 1/277 (0%)

Query: 44  TRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFG 103
           T    +E K++  +  P     +A Y + VI+   AGH G+L+L+ +++AN+      F 
Sbjct: 21  TNPLTVELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFS 80

Query: 104 LLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQP 163
           ++ G+  ALETLCGQA+G K+Y  +G Y   +       C L+  L+++   +L  LGQ 
Sbjct: 81  IMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQD 140

Query: 164 DDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVY 223
            +++ ++G  + WL+P  F  A   PL RFL +Q   + + + ++ +LL H+LV W  V+
Sbjct: 141 PEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVF 200

Query: 224 KMQLGLIGTAITLSFSWWVLIFGMFGYVA-CGGCPRTWTGFSMEAFSDLWEFVKLSVASG 282
              LG  G A+  S S+W     +  YV     C +T    S +  S + +F +  + S 
Sbjct: 201 LFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSA 260

Query: 283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSIN 319
            M+CLE W + +LIL +G L N K+    LSIC++I 
Sbjct: 261 AMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIE 297

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 147/270 (54%), Gaps = 1/270 (0%)

Query: 49  IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGM 108
           +E KK+  +  P     +A Y + VI+   AGH G+L+L+ +++A +      F ++ G+
Sbjct: 26  VELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIMFGL 85

Query: 109 ASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAE 168
             +LETL GQA+G K+Y  +G Y   +       CVL+  L+++   +L  LGQ  D++ 
Sbjct: 86  VGSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISR 145

Query: 169 LSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG 228
           ++G  +L L+P  F+ A   PL RFL +Q   + + + +L +LL H+ V W  V  + LG
Sbjct: 146 VAGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLG 205

Query: 229 LIGTAITLSFSWWVLIFGMFGYVA-CGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCL 287
             G A+ +S S+W     +  YV     C +T    S +  S + +F +  V S  MLCL
Sbjct: 206 SNGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCL 265

Query: 288 ENWYYRVLILMTGNLQNAKIAVDALSICMS 317
           E W + +LIL +G LQN K+    LSIC++
Sbjct: 266 EWWLFELLILCSGLLQNPKLETSVLSICLT 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 149/283 (52%), Gaps = 2/283 (0%)

Query: 37  DDSAGTLTRRFWIESKKLWHIVG-PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANT 95
           D S+  + +   +E  K   I   P IF+ +  Y + + +  FA  LG LELA  ++AN+
Sbjct: 17  DKSSTFVQKLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQLELAGATLANS 76

Query: 96  VVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASP 155
                 F  + G++ ALETLCGQ FG K Y MLG+++Q S IV  +  +L+  L+ F   
Sbjct: 77  WATVTGFAFMTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVFTILITILWFFTES 136

Query: 156 VLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHL 215
           V  LL Q   +++ + +   +L P   ++ F   + RF Q+Q     +   S   L++++
Sbjct: 137 VFLLLRQDPSISKQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTPLVLFSFLPLVINI 196

Query: 216 LVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGC-PRTWTGFSMEAFSDLWEF 274
             T+  V+   LG IG  I  S S W+    +  YV C      TWTGFSME+F  +   
Sbjct: 197 GTTYALVHLAGLGFIGAPIATSISLWIAFVSLGFYVICSDKFKETWTGFSMESFHHVVLN 256

Query: 275 VKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMS 317
           + LS+ S  M+CLE W + +L+ + G ++N +I    ++IC++
Sbjct: 257 LTLSIPSAAMVCLEYWAFEILVFLAGLMRNPEITTSLVAICVN 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  151 bits (381), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 156/321 (48%), Gaps = 10/321 (3%)

Query: 9   GTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVG-PTIFSRMA 67
            T+ PLL D          G          S+  + +   +E  K   I   P I + + 
Sbjct: 5   ATSSPLLDDHV--------GGEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVF 56

Query: 68  SYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127
            Y + + +  FA HLG LELA  ++AN+      F  ++G++ +LETLCGQ FG K+Y M
Sbjct: 57  YYCIPITSVMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRM 116

Query: 128 LGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQ 187
           LGV++Q S IV  +  +L+   + F   +  LL Q   +++ + +   +  P   ++ F 
Sbjct: 117 LGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFL 176

Query: 188 FPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGM 247
             + RF Q+Q     +   S   L++++   ++ VY   LG IG  I  S S W+    +
Sbjct: 177 QNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSL 236

Query: 248 FGYVACG-GCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAK 306
             YV C      TWTGFS+E+F  +   + LS+ S  M+CLE W + +L+ + G + N +
Sbjct: 237 GTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPE 296

Query: 307 IAVDALSICMSINGWESQICY 327
           I    ++IC++       + Y
Sbjct: 297 INTSLVAICVNTEAISYMLTY 317

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 153/299 (51%), Gaps = 5/299 (1%)

Query: 24  PLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLG 83
           PLL G          S  T    F  E K +  +  P     ++ Y + VI+   AGH G
Sbjct: 4   PLLLGDDQLITRNLKSTPTWWMNFTAELKNVSSMAAPMATVTVSQYLLPVISVMVAGHCG 63

Query: 84  DLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICC 143
           +L+L+ +++A        FG++ G+  ALETLCGQA+G K+Y  +G Y   + +      
Sbjct: 64  ELQLSGVTLATAFANVSGFGIMYGLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIV 123

Query: 144 VLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203
           VL+  L+ +   +   LGQ  D+++++G  ++ L+P   + A Q PL RFLQ+Q   + +
Sbjct: 124 VLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPL 183

Query: 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWW--VLIFGMFGYVACGGCPRTWT 261
            + ++ +LL H+ V  + VY   LG  G A+ +  S+W  VLI  ++   +   C +T  
Sbjct: 184 LYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFS-SACEKT-R 241

Query: 262 GFSMEAFS-DLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSIN 319
           GF  + F   + +F +  + S  M  +E   + +LIL +G L N K+    LSIC++ +
Sbjct: 242 GFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTS 300

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  131 bits (330), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 15/304 (4%)

Query: 24  PLLQG-----SASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAF 78
           PLL G     + S  P+P     T    F  E K L  +  P     +A Y + VI+   
Sbjct: 4   PLLLGDNQIITGSLKPTP-----TWRMNFTAELKNLSRMALPMATVTVAQYLLPVISVMV 58

Query: 79  AGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIV 138
           AGH  +L+L+ +++A +      F ++ G+A ALETLCGQA+G K+Y  +G Y   + + 
Sbjct: 59  AGHRSELQLSGVALATSFTNVSGFSVMFGLAGALETLCGQAYGAKQYAKIGTYTFSAIVS 118

Query: 139 LFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQL 198
                VL+  L+ +   +   LGQ  D+++++G  ++ L+P   + A Q PL RFLQ+Q 
Sbjct: 119 NVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQG 178

Query: 199 KTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWW--VLIFGMFGYVACGGC 256
             + + + ++ +LL H+ V  + VY   LG  G A+ +  S+W  VLI  ++   +   C
Sbjct: 179 LVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFS-SSC 237

Query: 257 PRTWTGFSMEAFS-DLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIC 315
            +T  GF  + F   + +F +  + S  M  +E   +  LIL +G L N K+    LSIC
Sbjct: 238 EKT-RGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSIC 296

Query: 316 MSIN 319
           ++ +
Sbjct: 297 LTTS 300

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 155/304 (50%), Gaps = 12/304 (3%)

Query: 26  LQGSASTAPSPDDSAGTLTRR---------FWIESKKLWHIVGPTIFSRMASYSMFVITQ 76
           ++ +  +AP P  +     RR         F  E + L  + GP   +++  + +  I+ 
Sbjct: 1   MERTEESAPGPGGADAASERRGLRCLLLPGFLEELRALLVLAGPAFLAQLMMFLISFISS 60

Query: 77  AFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSW 136
            F GHLG LEL A+++A  V+      +  G++SA +TL  Q +G +    +GV +QR  
Sbjct: 61  VFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGT 120

Query: 137 IVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQ-RFLQ 195
           ++L +CC     L++    +L L  Q  DV+ L+    +  +P     AF + LQ ++L 
Sbjct: 121 LILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPA-LPAAFLYTLQVKYLL 179

Query: 196 SQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGG 255
           +Q   +      +A+ LV+ L  ++F+Y + LG++G+A+  + S + L   +F Y+    
Sbjct: 180 NQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRR 239

Query: 256 CPR-TWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSI 314
             + TW G+S E   D   F++L++ S +MLC+E W Y V   ++G L   ++   +++ 
Sbjct: 240 LHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITY 299

Query: 315 CMSI 318
            ++I
Sbjct: 300 ELAI 303

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224097194	488	predicted protein [Populus trichocarpa]	0.9	0.645	0.729	1e-134
356497726	491	PREDICTED: protein TRANSPARENT TESTA 12-	0.891	0.635	0.724	1e-132
302142014	521	unnamed protein product [Vitis vinifera]	0.925	0.621	0.702	1e-131
359492469	490	PREDICTED: protein TRANSPARENT TESTA 12-	0.925	0.661	0.702	1e-131
449438809	484	PREDICTED: protein TRANSPARENT TESTA 12-	0.877	0.634	0.710	1e-129
357485623	490	Protein TRANSPARENT TESTA [Medicago trun	0.862	0.616	0.742	1e-129
255586693	482	multidrug resistance pump, putative [Ric	0.888	0.645	0.718	1e-125
350534468	447	ripening regulated protein DDTFR18 [Sola	0.825	0.646	0.705	1e-123
224067013	492	predicted protein [Populus trichocarpa]	0.825	0.587	0.733	1e-123
255586695	507	multidrug resistance pump, putative [Ric	0.862	0.595	0.765	1e-122

>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/325 (72%), Positives = 267/325 (82%), Gaps = 10/325 (3%)

Query: 1   MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGP 60
           M SNG         + D     VPLL+    T    D     L  R  +ESKKLWHIVGP
Sbjct: 1   MSSNGA--------VLDYLEAKVPLLE--EKTKRDDDIVVQDLACRVGVESKKLWHIVGP 50

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
            IFSR+ SYSM VITQAFAGHLGDLELA ISIAN V+V F+FGLLLGMASALETLCGQAF
Sbjct: 51  AIFSRLTSYSMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCGQAF 110

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G KKYYMLGVYMQRSWIVLF+CC+LLLPLY+FASPVLKLLGQP+D+AELSG  ++W++P+
Sbjct: 111 GAKKYYMLGVYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPL 170

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
           HFSFAFQFPLQRFLQSQLK MVIAWVS  +L+VH+ V+WL VYK+QLG+ GTA+TL+FSW
Sbjct: 171 HFSFAFQFPLQRFLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFSW 230

Query: 241 WVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTG 300
           WVL+FG+ GY  CGGCP TWTGFS EAFS LWEF KLS ASGVMLCLENWYYR+LILMTG
Sbjct: 231 WVLVFGLLGYTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTG 290

Query: 301 NLQNAKIAVDALSICMSINGWESQI 325
           NL+NA+IAVDALSICM+INGWE  I
Sbjct: 291 NLKNAEIAVDALSICMTINGWEMMI 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/316 (72%), Positives = 269/316 (85%), Gaps = 4/316 (1%)

Query: 12  VPLLQDS--ASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASY 69
           +P  +DS      +PLL+    T     D   +  RRFW+ESK+LWHIVGP+IFSR+ASY
Sbjct: 1   MPSKEDSPLVEAKLPLLEAHPLTDEREQDQ--SFPRRFWLESKRLWHIVGPSIFSRIASY 58

Query: 70  SMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLG 129
           SM VITQAFAGHLGDLELAAISIAN VVV F+FGLLLGMASALETLCGQAFG KKYYMLG
Sbjct: 59  SMLVITQAFAGHLGDLELAAISIANNVVVGFDFGLLLGMASALETLCGQAFGAKKYYMLG 118

Query: 130 VYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFP 189
           VYMQRSWIVLFICC+ LLPLY+FASPVLKLLGQP+++AELSG VS+W++PVHF+FAFQFP
Sbjct: 119 VYMQRSWIVLFICCIFLLPLYLFASPVLKLLGQPEELAELSGAVSIWMIPVHFAFAFQFP 178

Query: 190 LQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFG 249
           LQRFLQ QLKT  IAWVSL +L+VH+ V+WLFV+K+Q G++G A T++FSWWVL  G+FG
Sbjct: 179 LQRFLQCQLKTAPIAWVSLVALVVHVFVSWLFVFKLQFGVVGAAATINFSWWVLTLGLFG 238

Query: 250 YVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAV 309
           YV  GGCP TW+GFS+EAFS LWEF+KLS A+GVMLCLENWYY++LI+MTGNL+NA+IAV
Sbjct: 239 YVVWGGCPHTWSGFSVEAFSGLWEFLKLSAAAGVMLCLENWYYKILIVMTGNLENAEIAV 298

Query: 310 DALSICMSINGWESQI 325
           DALSICM+IN  E  I
Sbjct: 299 DALSICMTINSLELMI 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/339 (70%), Positives = 278/339 (82%), Gaps = 15/339 (4%)

Query: 1   MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGP 60
           M S G  E  N PLLQ+S    V             D     L  R WIESKKLWHIVGP
Sbjct: 32  MGSIGGDEDLNRPLLQESKGVVV-------------DPEKEKLASRVWIESKKLWHIVGP 78

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
           +IFSR+ASYSM V+TQAFAGHLG+LELA+ISIANTV+V FNFGLLLGMASALETLCGQAF
Sbjct: 79  SIFSRVASYSMNVVTQAFAGHLGELELASISIANTVIVGFNFGLLLGMASALETLCGQAF 138

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G KKY+MLG+YMQRSWIVLF+CC LLLP YVFA+P+LKLLGQPDDVAE SG+V+L L+P+
Sbjct: 139 GAKKYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPLLKLLGQPDDVAEQSGLVALCLIPL 198

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
           HFSFAFQFPLQRFLQSQLKT VIAWVSL + ++H+ ++WLFVYK++ G+IGTAITL+FSW
Sbjct: 199 HFSFAFQFPLQRFLQSQLKTGVIAWVSLVAFVIHVFISWLFVYKLEFGIIGTAITLNFSW 258

Query: 241 WVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTG 300
           W+L+FGM GY  CGGCP +WTGFSM+AFS LWEFVKLS ASGVMLCLENWYYR+LILMTG
Sbjct: 259 WILVFGMLGYTVCGGCPLSWTGFSMQAFSGLWEFVKLSTASGVMLCLENWYYRILILMTG 318

Query: 301 NLQNAKIAVDALSICMSINGWESQI--CYYSISGDLDCN 337
           N +NA++AVDALS+CM+INGWE  I   +++ +G    N
Sbjct: 319 NWKNAEVAVDALSVCMTINGWEMMIPLAFFAATGVRVAN 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/339 (70%), Positives = 278/339 (82%), Gaps = 15/339 (4%)

Query: 1   MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGP 60
           M S G  E  N PLLQ+S    V             D     L  R WIESKKLWHIVGP
Sbjct: 1   MGSIGGDEDLNRPLLQESKGVVV-------------DPEKEKLASRVWIESKKLWHIVGP 47

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
           +IFSR+ASYSM V+TQAFAGHLG+LELA+ISIANTV+V FNFGLLLGMASALETLCGQAF
Sbjct: 48  SIFSRVASYSMNVVTQAFAGHLGELELASISIANTVIVGFNFGLLLGMASALETLCGQAF 107

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G KKY+MLG+YMQRSWIVLF+CC LLLP YVFA+P+LKLLGQPDDVAE SG+V+L L+P+
Sbjct: 108 GAKKYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPLLKLLGQPDDVAEQSGLVALCLIPL 167

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
           HFSFAFQFPLQRFLQSQLKT VIAWVSL + ++H+ ++WLFVYK++ G+IGTAITL+FSW
Sbjct: 168 HFSFAFQFPLQRFLQSQLKTGVIAWVSLVAFVIHVFISWLFVYKLEFGIIGTAITLNFSW 227

Query: 241 WVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTG 300
           W+L+FGM GY  CGGCP +WTGFSM+AFS LWEFVKLS ASGVMLCLENWYYR+LILMTG
Sbjct: 228 WILVFGMLGYTVCGGCPLSWTGFSMQAFSGLWEFVKLSTASGVMLCLENWYYRILILMTG 287

Query: 301 NLQNAKIAVDALSICMSINGWESQI--CYYSISGDLDCN 337
           N +NA++AVDALS+CM+INGWE  I   +++ +G    N
Sbjct: 288 NWKNAEVAVDALSVCMTINGWEMMIPLAFFAATGVRVAN 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438809|ref|XP_004137180.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449476480|ref|XP_004154748.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 264/307 (85%)

Query: 19  ASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAF 78
           + +NVPLL+         D +  +L+ R W+ESK+LWHIVGP IFSR+ASYSM VITQAF
Sbjct: 2   SESNVPLLELKPQIIEEDDANGSSLSTRIWVESKQLWHIVGPAIFSRVASYSMLVITQAF 61

Query: 79  AGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIV 138
           AGHLGDLELAA+SIAN V+V F+FGLLLGMASALETLCGQA+G KK++MLG+YMQRSWIV
Sbjct: 62  AGHLGDLELAAMSIANNVIVGFDFGLLLGMASALETLCGQAYGAKKFHMLGIYMQRSWIV 121

Query: 139 LFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQL 198
           LFIC +L+LP+Y+F++PVLKLLGQP D+AE++G V++  LP+HFSFA QFPLQRFLQSQL
Sbjct: 122 LFICSILILPIYLFSTPVLKLLGQPSDLAEMAGKVAMVFLPLHFSFAIQFPLQRFLQSQL 181

Query: 199 KTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR 258
           KT VIA++SL +L+VH+LV+WLFVY ++LGL+GTAIT + SWWVL+FG+  Y  CGGCP 
Sbjct: 182 KTAVIAYLSLVALVVHILVSWLFVYGLKLGLVGTAITTNISWWVLVFGLLFYTICGGCPG 241

Query: 259 TWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSI 318
           TW GFS EAFS LWEFVKLS ASGVM+CLENWYYR+LI+MTGNL NAK+AVDALS+CM+I
Sbjct: 242 TWCGFSFEAFSGLWEFVKLSTASGVMICLENWYYRILIVMTGNLANAKLAVDALSVCMTI 301

Query: 319 NGWESQI 325
           NGWE  I
Sbjct: 302 NGWEMMI 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/307 (74%), Positives = 257/307 (83%), Gaps = 5/307 (1%)

Query: 19  ASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAF 78
             T VPLL  +       D     LTR+ WIESKKLWHIVGP IFSR+ASY M VITQ+F
Sbjct: 11  GETKVPLLSRNEEEEEEQD-----LTRKVWIESKKLWHIVGPAIFSRIASYMMLVITQSF 65

Query: 79  AGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIV 138
           AGHLGDLELAAISIAN VVV F+FGLLLGMASALETLCGQA+G K+YYMLGVYMQRSWIV
Sbjct: 66  AGHLGDLELAAISIANNVVVGFDFGLLLGMASALETLCGQAYGAKQYYMLGVYMQRSWIV 125

Query: 139 LFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQL 198
           LFICC+ LLP+Y+FA+PVL+LLGQP+D+A LSG VS+W++P+HF+FAFQFPL RFLQSQL
Sbjct: 126 LFICCIFLLPIYLFATPVLRLLGQPEDLAVLSGQVSMWMIPLHFAFAFQFPLNRFLQSQL 185

Query: 199 KTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR 258
           KT  IAWVSL +LLVH+ V+WLFV+K Q G+IGTA TL+FSWW L  G+F Y   GGCP 
Sbjct: 186 KTAAIAWVSLFALLVHIFVSWLFVFKFQFGVIGTAATLNFSWWALTVGLFCYTVYGGCPL 245

Query: 259 TWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSI 318
           TW GFSMEAFS LWEFVKLS ASGVMLCLENWYYR+LILMTGNL NA+IAVDALSICM+I
Sbjct: 246 TWNGFSMEAFSGLWEFVKLSAASGVMLCLENWYYRILILMTGNLPNAEIAVDALSICMTI 305

Query: 319 NGWESQI 325
           NG E  I
Sbjct: 306 NGLEMMI 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/327 (71%), Positives = 268/327 (81%), Gaps = 16/327 (4%)

Query: 1   MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGP 60
           MPS G  E + VPLL D                  P D    L+R+ WIESKKLW IVGP
Sbjct: 1   MPSEGTVEESKVPLLTDLG----------------PIDEEDNLSRKVWIESKKLWQIVGP 44

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
            IFSR+AS+SM VITQAFAGHLGDLELAAISIAN V++ F+ GLLLGMASALETLCGQAF
Sbjct: 45  AIFSRLASFSMIVITQAFAGHLGDLELAAISIANNVIIGFDLGLLLGMASALETLCGQAF 104

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G KKYYMLGVYMQRSWIVLF+CCVLLLPLY+FASP LKLLGQP+DVAELSG+VS++++P+
Sbjct: 105 GAKKYYMLGVYMQRSWIVLFLCCVLLLPLYLFASPFLKLLGQPNDVAELSGIVSIYMIPL 164

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
           HFSFAFQFPLQRFLQSQLK  VIA ++   L+VH++V+WL VY+ QLG+IGTA+TL+FSW
Sbjct: 165 HFSFAFQFPLQRFLQSQLKNTVIALITFVGLVVHVIVSWLLVYRFQLGVIGTAMTLNFSW 224

Query: 241 WVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTG 300
           WVL+FG  GYV  GGCP TW GFS EAFS LWEF KLS ASGVMLCLENWYYR+LILMTG
Sbjct: 225 WVLVFGHLGYVIFGGCPLTWKGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTG 284

Query: 301 NLQNAKIAVDALSICMSINGWESQICY 327
           NL+NA+IAVDALSICM+INGWE  I +
Sbjct: 285 NLKNAEIAVDALSICMTINGWEMMIPF 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534468|ref|NP_001234398.1| ripening regulated protein DDTFR18 [Solanum lycopersicum] gi|12231296|gb|AAG49032.1|AF204785_1 ripening regulated protein DDTFR18 [Solanum lycopersicum]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/289 (70%), Positives = 251/289 (86%)

Query: 37  DDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTV 96
           ++    L  R WIE+KKLWHIVGP IFSR+ASY+M +ITQ+FAGHLG+++LAAISI+NTV
Sbjct: 16  ENKIEDLKTRVWIETKKLWHIVGPAIFSRIASYTMNIITQSFAGHLGEVQLAAISISNTV 75

Query: 97  VVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPV 156
           +V  NFGLLLGMASALETLCGQA+G KK++MLG+YMQRSWIVL +CC LLLP+Y++A+P+
Sbjct: 76  IVGLNFGLLLGMASALETLCGQAYGAKKHHMLGIYMQRSWIVLTLCCFLLLPMYIYATPI 135

Query: 157 LKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLL 216
           LK LGQPDDVAELSG+V+LW +P+HFSFAFQFP+QRFLQSQLKT+VIAW+SLA L +H +
Sbjct: 136 LKSLGQPDDVAELSGIVALWFIPLHFSFAFQFPIQRFLQSQLKTVVIAWISLAVLAIHTV 195

Query: 217 VTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVK 276
           ++WLFVYK+ LGL+G A+ L  SWW+L+ GMF Y ACGGCP TWTGFS +AFS L EF +
Sbjct: 196 ISWLFVYKLNLGLVGAAVALDISWWLLVVGMFMYAACGGCPETWTGFSAQAFSGLCEFFR 255

Query: 277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
           LS A+GVMLCLENWYYR+L+LMTG L+NA +A+DALSICM+I GWE  I
Sbjct: 256 LSAAAGVMLCLENWYYRILMLMTGYLENATLALDALSICMNIIGWEMMI 304

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/289 (73%), Positives = 245/289 (84%)

Query: 37  DDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTV 96
            ++   L  R W E+KKLW IVGP IFSR+A++SM +ITQAFAGHLGD+ELAAISIANTV
Sbjct: 27  QENQDPLASRVWTETKKLWEIVGPAIFSRVATFSMNIITQAFAGHLGDVELAAISIANTV 86

Query: 97  VVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPV 156
           +V FNFGLLLGMASALETLCGQAFG K+Y+MLG+YMQRSWIVLF CC LLLP YVFA+P+
Sbjct: 87  IVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFFCCFLLLPFYVFAAPL 146

Query: 157 LKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLL 216
           LK LGQPDDVAE SG+V+LWL+P+HFSFAFQFPLQRFLQSQLK  VIAW+SLASL V++L
Sbjct: 147 LKFLGQPDDVAEQSGLVALWLIPLHFSFAFQFPLQRFLQSQLKNQVIAWISLASLGVNVL 206

Query: 217 VTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVK 276
            +WL VY +  G+IG AI L  SWWV++ G+F Y +CG CP TWTGFS +AF  LWEFVK
Sbjct: 207 TSWLLVYVLDFGVIGAAIALDISWWVIVIGLFIYTSCGWCPSTWTGFSAQAFCGLWEFVK 266

Query: 277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
           LS ASGVMLCLENWYYR+LILMTG  +NA +AVDALS+CMSINGWE  I
Sbjct: 267 LSAASGVMLCLENWYYRILILMTGYFKNATLAVDALSVCMSINGWEIMI 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586695|ref|XP_002533973.1| multidrug resistance pump, putative [Ricinus communis] gi|223526045|gb|EEF28411.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/303 (76%), Positives = 262/303 (86%), Gaps = 1/303 (0%)

Query: 23  VPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL 82
           VPLL+         DD   +L+R+ WIESKKLW I GP IFSR+AS+SM VITQAFAGHL
Sbjct: 8   VPLLK-DLDRKVEEDDIELSLSRKVWIESKKLWEIAGPAIFSRVASFSMLVITQAFAGHL 66

Query: 83  GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFIC 142
           G+LELAAISIAN V+V F+FGLLLGMASALETLCGQAFG KKYYMLGVYMQRSWIVLF+C
Sbjct: 67  GNLELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFLC 126

Query: 143 CVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMV 202
           CVLLLPLY+FASPVL LLGQP DVAELSGVVS++L+P+HFSFAFQFPLQRFLQ QLK  V
Sbjct: 127 CVLLLPLYLFASPVLTLLGQPKDVAELSGVVSIYLIPLHFSFAFQFPLQRFLQCQLKNTV 186

Query: 203 IAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTG 262
            A +SL +L VH++V+WLFVYK+ LG+IGTA+TL+FSWWVL+FG  GY+  GGCP TW G
Sbjct: 187 TALISLVALAVHVIVSWLFVYKLHLGVIGTAMTLNFSWWVLVFGHLGYIIFGGCPLTWNG 246

Query: 263 FSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWE 322
           FS+EAFS LW+F KLS ASGVMLCLENWYYR+LILMTGNL+NAKIAVDALSICMSINGWE
Sbjct: 247 FSIEAFSGLWDFTKLSAASGVMLCLENWYYRILILMTGNLKNAKIAVDALSICMSINGWE 306

Query: 323 SQI 325
             I
Sbjct: 307 MMI 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.808	0.582	0.674	9.2e-107
TAIR|locus:2142544	489	AT5G10420 [Arabidopsis thalian	0.814	0.582	0.624	9.1e-100
TAIR|locus:2172477	491	AT5G44050 "AT5G44050" [Arabido	0.814	0.580	0.607	3.9e-99
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.82	0.549	0.456	8.6e-72
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.808	0.572	0.462	4.8e-71
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.814	0.57	0.466	7.7e-71
TAIR|locus:2015368	484	AT1G47530 "AT1G47530" [Arabido	0.802	0.580	0.462	9.9e-71
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.88	0.618	0.435	1.6e-70
TAIR|locus:2037960	494	AT1G33080 "AT1G33080" [Arabido	0.814	0.576	0.452	4.9e-69
TAIR|locus:2037980	494	AT1G33090 "AT1G33090" [Arabido	0.808	0.572	0.441	2.7e-68

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1035 (369.4 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
 Identities = 191/283 (67%), Positives = 220/283 (77%)

Query:    43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNF 102
             L  R  +E+KKLW IVGP IFSR+ +YSM VITQAFAGHLGDLELAAISI N V V FNF
Sbjct:    30 LKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAISIVNNVTVGFNF 89

Query:   103 GLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQ 162
             GLLLGMASALETLCGQAFG KKY+MLGVYMQRSWIVLF CCVLLLP Y+F +PVLK LGQ
Sbjct:    90 GLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLPTYIFTTPVLKFLGQ 149

Query:   163 PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXXXX 222
             PDD+AELSGVV++W++P+HF+F   FPLQRFLQ QLK  V                    
Sbjct:   150 PDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVALVVHILVCWLFV 209

Query:   223 YKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASG 282
               ++LG++GT  T+S SWWV +  +  Y  CGGCP TWTG S EA + LWEF+KLS +SG
Sbjct:   210 DGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSG 269

Query:   283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
             VMLCLENWYYR+LI+MTGNLQNA+IAVD+LSICM+INGWE  I
Sbjct:   270 VMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAINGWEMMI 312

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 178/285 (62%), Positives = 222/285 (77%)

Query:    41 GTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAF 100
             G + R  WIE+KK+W+IVGP+IF+ +A+YS+ +ITQAFAGHLGDLELAAISI N   + F
Sbjct:    29 GGMKREIWIETKKIWYIVGPSIFTGLATYSILIITQAFAGHLGDLELAAISIINNFTLGF 88

Query:   101 NFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLL 160
             N+GLLLGMASALETLCGQAFG ++YYMLGVYMQR WI+LF+CC+LLLP+Y+FA+P+LK +
Sbjct:    89 NYGLLLGMASALETLCGQAFGAREYYMLGVYMQRYWIILFLCCILLLPMYLFATPILKFI 148

Query:   161 GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXX 220
             GQ DD+AEL+G ++LW++PVHF+FAF FPL RFLQ QLK  VI                 
Sbjct:   149 GQSDDIAELTGTIALWVIPVHFAFAFFFPLNRFLQCQLKNKVIAISAGVSLAVHILVCWF 208

Query:   221 XXYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVA 280
               Y  +LG+IGT  +++  WW+ IF +F Y   GGC  TWTGFS EAF+ L E  KLS +
Sbjct:   209 FVYGYKLGIIGTMASVNVPWWLNIFILFLYSTRGGCTLTWTGFSSEAFTGLLELTKLSAS 268

Query:   281 SGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
             SG+MLCLENWYY++L+LMTGNL NAKIAVD+LSICMS+NGWE  I
Sbjct:   269 SGIMLCLENWYYKILMLMTGNLVNAKIAVDSLSICMSVNGWEMMI 313

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 173/285 (60%), Positives = 221/285 (77%)

Query:    41 GTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAF 100
             G + +  W+E+KKLW IVGP IF+R+ +  +FVITQAFAGHLG+LELAAISI N V++ F
Sbjct:    31 GEIKKEIWLETKKLWRIVGPAIFTRVTTNLIFVITQAFAGHLGELELAAISIVNNVIIGF 90

Query:   101 NFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLL 160
             N+ L +GMA+ALETLCGQAFG KKY M GVY+QRSWIVLF+  +LLLP+Y+FA+P+LK +
Sbjct:    91 NYSLFIGMATALETLCGQAFGAKKYDMFGVYLQRSWIVLFLFSILLLPMYIFATPILKFM 150

Query:   161 GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXX 220
             GQPDD+AELSG++S+W +P HFSFAF FP+ RFLQ QLK  VI                 
Sbjct:   151 GQPDDIAELSGIISVWAIPTHFSFAFFFPINRFLQCQLKNSVIAISSGVSLVVHIFVCWL 210

Query:   221 XXYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVA 280
               Y ++LG+IGT  T + SWW+ +F +F Y  CGGCP TWTGFSME+F+ LWEF KLS +
Sbjct:   211 FVYVLELGVIGTIATANVSWWLNVFILFTYTTCGGCPLTWTGFSMESFTRLWEFTKLSAS 270

Query:   281 SGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
             SG+M+CLENWYYR+LI+MTGNL++A+I VD++SICMSING E  +
Sbjct:   271 SGIMVCLENWYYRMLIVMTGNLEDARIDVDSMSICMSINGLEMMV 315

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 131/287 (45%), Positives = 188/287 (65%)

Query:    41 GTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAF 100
             G   R F IES+KLW + GP IF+ M+ YS+  +TQ FAGH+  L LAA+SI N+V+  F
Sbjct:    58 GDFVREFRIESRKLWKLAGPAIFTTMSQYSLGAVTQVFAGHISTLALAAVSIENSVIAGF 117

Query:   101 NFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLL 160
             +FG++LGM SALETLCGQAFG  K  MLGVY+QRSW++L +  + L  +Y+FA+P+L  +
Sbjct:   118 SFGIMLGMGSALETLCGQAFGAGKVSMLGVYLQRSWVILSVTALFLSLIYIFAAPILTFI 177

Query:   161 GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXX 220
             GQ   ++ ++G+ S++++P  F++A  FP  +FLQSQ K MV+                 
Sbjct:   178 GQTAAISAMAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIMVMAGISGVVLVIHSFFTWL 237

Query:   221 XXYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVA 280
                ++  GL G A+ L+ SWWV++     Y+    C   W+GF+ EAF +LW FVKLS+A
Sbjct:   238 VMSRLHWGLPGLALVLNTSWWVIVVAQLVYIFNCTCGEAWSGFTWEAFHNLWGFVKLSLA 297

Query:   281 SGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICY 327
             S  MLCLE WY+  L+L  G L+NA+++V ALSICM+I GW + + +
Sbjct:   298 SAAMLCLEIWYFMALVLFAGYLKNAEVSVAALSICMNILGWAAMVAF 344

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 131/283 (46%), Positives = 188/283 (66%)

Query:    43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNF 102
             L ++ WIESKKLW +  P IF+R +++ + +I+Q+F GHLG +ELAA SI  TV++ F+ 
Sbjct:    29 LKQKVWIESKKLWIVAAPAIFTRFSTFGVSIISQSFIGHLGPIELAAYSITFTVLLRFSN 88

Query:   103 GLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQ 162
             G+LLGMASALETLCGQA+G K+ +MLG+Y+QRSWIVL  C + L P+Y+F+ P+L  LGQ
Sbjct:    89 GILLGMASALETLCGQAYGAKQNHMLGIYLQRSWIVLTGCTICLTPVYIFSGPILLALGQ 148

Query:   163 PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXXXX 222
              + +  ++ +++LW++ ++FSF   F  Q FLQ+Q K  +I                   
Sbjct:   149 EERIVRVARIIALWVIGINFSFVPSFTCQMFLQAQSKNKIIAYVAAVSLGVHVFLSWLLM 208

Query:   223 YKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASG 282
                  G+ G   +   ++W+       +V CGGC  TW GFSM AF DLW   KLS++SG
Sbjct:   209 VHFNFGITGAMTSTLVAFWLPNIAQLLFVTCGGCKDTWRGFSMMAFKDLWPVFKLSMSSG 268

Query:   283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
              MLCLE WY  +L+L+TGNL+NA++A+DAL+IC++ING E  I
Sbjct:   269 GMLCLELWYNSILVLLTGNLKNAEVALDALAICLNINGLEMMI 311

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 133/285 (46%), Positives = 187/285 (65%)

Query:    41 GTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAF 100
             G   R F +E+KKLW++ GP IF+ +  YS+  ITQ FAGH+  + LAA+S+ N+VV  F
Sbjct:    36 GGFVREFNVETKKLWYLAGPAIFTSVNQYSLGAITQVFAGHISTIALAAVSVENSVVAGF 95

Query:   101 NFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLL 160
             +FG++LGM SALETLCGQAFG  K  MLGVY+QRSW++L +  ++L  LY+FA+P+L  +
Sbjct:    96 SFGIMLGMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTALILSLLYIFAAPILASI 155

Query:   161 GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXX 220
             GQ   ++  +G+ S++++P  F++A  FP  +FLQSQ K MV+                 
Sbjct:   156 GQTAAISSAAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIMVMAVISAVALVIHVPLTWF 215

Query:   221 XXYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVA 280
                K+Q G+ G A+ L+ SW  +      Y+  G C   W+GFS EAF +LW FV+LS+A
Sbjct:   216 VIVKLQWGMPGLAVVLNASWCFIDMAQLVYIFSGTCGEAWSGFSWEAFHNLWSFVRLSLA 275

Query:   281 SGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
             S VMLCLE WY+  +IL  G L+NA+I+V ALSICM+I GW + I
Sbjct:   276 SAVMLCLEVWYFMAIILFAGYLKNAEISVAALSICMNILGWTAMI 320

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 130/281 (46%), Positives = 187/281 (66%)

Query:    45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGL 104
             + F  ESK+LW + GP IF+ ++ YS+  +TQ F+G LG+LELAA+S+ N+V+    FG+
Sbjct:    30 KEFGEESKRLWELAGPAIFTAISQYSLGALTQTFSGRLGELELAAVSVENSVISGLAFGV 89

Query:   105 LLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPD 164
             +LGM SALETLCGQA+G  +  M+G+YMQRSW++LF   + LLP+Y++A P+L   G+  
Sbjct:    90 MLGMGSALETLCGQAYGAGQIRMMGIYMQRSWVILFTTALFLLPVYIWAPPILSFFGEAP 149

Query:   165 DVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXXXXYK 224
              +++ +G  +LW++P  F++A  FP+Q+FLQSQ K +V+                     
Sbjct:   150 HISKAAGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVVLVIHAVFSWLFILY 209

Query:   225 MQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVM 284
              + GL+G AITL+ SWW+++ G   Y+        WTGFSM AF DL+ FVKLS+AS +M
Sbjct:   210 FKWGLVGAAITLNTSWWLIVIGQLLYILITKSDGAWTGFSMLAFRDLYGFVKLSLASALM 269

Query:   285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
             LCLE WY  VL+++TG L N  I VDA+SICM+I GW + I
Sbjct:   270 LCLEFWYLMVLVVVTGLLPNPLIPVDAISICMNIEGWTAMI 310

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 134/308 (43%), Positives = 188/308 (61%)

Query:    18 SASTNVPLLQGXXXXXXXXXXXXGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQA 77
             SA+   P L              G   + F +E KKLW++ GP IF  +  YS+   TQ 
Sbjct:    13 SAAEEPPALPFSSVEDIPPITTVGGFVKEFNVEVKKLWYLAGPAIFMSITQYSLGAATQV 72

Query:    78 FAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWI 137
             FAGH+  + LAA+S+ N+V+  F+FG++LGM SALETLCGQAFG  K  MLGVY+QRSW+
Sbjct:    73 FAGHISTIALAAVSVENSVIAGFSFGVMLGMGSALETLCGQAFGAGKLSMLGVYLQRSWV 132

Query:   138 VLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQ 197
             +L +  V+L  LY+FA+P+L  +GQ   ++  +G+ S++++P  F++A  +P  +FLQSQ
Sbjct:   133 ILNVTAVILSLLYIFAAPILAFIGQTPAISSATGIFSIYMIPQIFAYAVNYPTAKFLQSQ 192

Query:   198 LKTMVIXXXXXXXXXXXXXXXXXXXYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCP 257
              K MV+                     +Q G  G A+ L+ SWW ++     Y+  G C 
Sbjct:   193 SKIMVMAAISAVALVLHVLLTWFVIEGLQWGTAGLAVVLNASWWFIVVAQLVYIFSGTCG 252

Query:   258 RTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMS 317
               W+GFS EAF +LW FV+LS+AS VMLCLE WY   +IL  G L+NA+I+V ALSICM+
Sbjct:   253 EAWSGFSWEAFHNLWSFVRLSLASAVMLCLEVWYLMAVILFAGYLKNAEISVAALSICMN 312

Query:   318 INGWESQI 325
             I GW + I
Sbjct:   313 ILGWTAMI 320

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 129/285 (45%), Positives = 184/285 (64%)

Query:    43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNF 102
             +  + W ESKKLW + GP IF+R ++  + +I+QAF GHLG  ELAA SI  TV++ F+ 
Sbjct:    29 MKEKVWRESKKLWVVAGPAIFTRFSTSGLSLISQAFIGHLGSTELAAYSITLTVLLRFSN 88

Query:   103 GLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQ 162
             G+LLGMASALETLCGQA+G K+Y+MLG+Y+QRSWIVL  C + L+P+Y+FA P+L  LGQ
Sbjct:    89 GILLGMASALETLCGQAYGAKQYHMLGIYLQRSWIVLTGCTICLMPIYIFAGPILLALGQ 148

Query:   163 PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXXXX 222
              + +  ++ +++LW++ ++ SF   F  Q FLQ+Q K  +I                   
Sbjct:   149 EERLVRVARIIALWVIGINISFVPSFTCQMFLQAQSKNKIIAYVAAVSLGVHVFLSWLLV 208

Query:   223 YKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASG 282
                  G+ G   +   + W+       +V CGGC  TW GFS  AF DLW   KLSV+SG
Sbjct:   209 VHFDFGIAGAMTSSLVAHWLPNIAQVLFVTCGGCTETWRGFSWLAFKDLWPVFKLSVSSG 268

Query:   283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICY 327
              M+CLE WY  +LIL+TGNL+NA++A++AL+IC++IN  E  + +
Sbjct:   269 GMICLELWYNSILILLTGNLKNAEVALNALAICININALEMMVAF 313

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 125/283 (44%), Positives = 185/283 (65%)

Query:    43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNF 102
             L  + WIESKKLW +  P+IF++ ++Y + ++TQ F GH+G  ELAA SI  TV++ F+ 
Sbjct:    29 LKEKVWIESKKLWVVAAPSIFTKFSTYGVSLVTQGFVGHIGPTELAAYSITFTVLLRFSN 88

Query:   103 GLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQ 162
             G+LLGMASAL TLCGQA+G K+Y+MLG+++QRSWIVL  C + ++P+++F+ P+L  LGQ
Sbjct:    89 GILLGMASALGTLCGQAYGAKQYHMLGIHLQRSWIVLTGCTICIMPIFIFSGPILLALGQ 148

Query:   163 PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXXXX 222
              D +  ++ V++LWL+ ++F+F   F  Q FLQSQ K  +I                   
Sbjct:   149 EDHIVRVARVIALWLIAINFTFVPAFTCQIFLQSQSKNKIIAYVSAVTLGLHVFFSWLLV 208

Query:   223 YKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASG 282
                  G+ G   +   ++W+       YV  GGC  TW GF+M AF DLW   KLS++SG
Sbjct:   209 VHFNFGITGAMTSTLVAFWMPNIVQLLYVTSGGCKDTWRGFTMLAFKDLWPVFKLSLSSG 268

Query:   283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQI 325
              M+CLE WY  +L+L+TGNL+NA++A+DAL+IC+++N  +  I
Sbjct:   269 GMVCLELWYNSILVLLTGNLKNAEVAIDALAICINVNALQMMI 311

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	1e-100
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	2e-34
pfam01554	161	pfam01554, MatE, MatE	6e-29
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	5e-25
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	2e-23
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	8e-18
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	5e-16
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	1e-13
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	3e-13
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	7e-12
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	1e-10
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	9e-09
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	2e-08
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	2e-08
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	4e-08
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	6e-07
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	7e-07
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	3e-06
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	7e-06
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	2e-05
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	4e-05
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	2e-04
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	7e-04
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	0.001
cd13124	434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	0.002
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	0.002
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	0.003
cd13123	420	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of	0.003
TIGR02900	488	TIGR02900, spore_V_B, stage V sporulation protein	0.004
cd13145	440	cd13145, MATE_like_5, Uncharacterized subfamily of	0.004

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  303 bits (779), Expect = e-100
 Identities = 113/278 (40%), Positives = 178/278 (64%), Gaps = 2/278 (0%)

Query: 50  ESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMA 109
           E+KKL  +  P + + +  YS+ V++  F GHLG LELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 110 SALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAEL 169
           SAL+TLCGQAFG K Y ++GVY+QR+ ++L +CCV +  L++   P+L LLGQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 170 SGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGL 229
           +G    WL+P  F++A   PL+R+LQ+Q   + + ++SL +LL+++L+ +L V+ + LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 230 IGTAITLSFSWWVLIFGMFGYV-ACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLE 288
           IG A+  S S+W+++  +  Y+    G   TW GFS EAF     F+KL++ S +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 289 NWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQIC 326
            W + +L+L+ G L    +A+ A SIC++       I 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIP 277

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  128 bits (324), Expect = 2e-34
 Identities = 68/263 (25%), Positives = 130/263 (49%), Gaps = 7/263 (2%)

Query: 60  PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQA 119
           P I + +    + ++  AF GHLG ++LAA+S+ ++V + F F +L+G+ +A   L  QA
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQA 59

Query: 120 FGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLL 178
            G   Y  LG   Q+S  + L +   +LL  Y F  P+L L+G   +VAEL+      L+
Sbjct: 60  VGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILI 119

Query: 179 PVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKM--QLGLIGTAITL 236
               ++   F L+ FL+ Q  T    +++L   ++++++ ++ ++     LG++G A+  
Sbjct: 120 LGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALAT 179

Query: 237 SFSWWV-LIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVL 295
             S+W+  +  ++           W G     +  L   +KL +     + LE+  + +L
Sbjct: 180 VISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239

Query: 296 ILMTGNLQNAKIAVDALSICMSI 318
            L+   L    IA+ A  I +++
Sbjct: 240 ALLVARL--GSIALAAHQIALNV 260

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score =  109 bits (274), Expect = 6e-29
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%)

Query: 60  PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQA 119
           P I   +      +I   F GHLG + LAA+SIAN++  +  F  LLG+++AL TL GQA
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIA-SLIFMFLLGLSTALTTLVGQA 59

Query: 120 FGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPV-LKLLGQPDDVAELSGVVSLWLL 178
            G   +   GV +++  I+  +  + +  L +      L L  Q ++V EL+      L 
Sbjct: 60  LGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILA 119

Query: 179 PVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWL 220
                 + QF L  FL+    T    +++L SLL+++ + +L
Sbjct: 120 LGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score =  104 bits (262), Expect = 5e-25
 Identities = 53/251 (21%), Positives = 114/251 (45%), Gaps = 18/251 (7%)

Query: 50  ESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMA 109
           E + L  +  P + +++A  +M  +    AG LG  +LAA+++ +++     F   +G+ 
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPV-FTFGMGLL 59

Query: 110 SALETLCGQAFGGKKYYMLG-VYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAE 168
            A+  L  QA G      +     Q  W+ L +  + L+ L   A P+L L+GQ  +VA 
Sbjct: 60  LAVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLS-LPLMLLLWLAPPILPLMGQEPEVAA 118

Query: 169 LSG----VVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYK 224
           ++      ++  + P      FQ  L+ FL +  +T     ++L +L++++ + ++ ++ 
Sbjct: 119 IARGYLLALAWGIPPA---LLFQV-LRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFG 174

Query: 225 M----QLGLIGTAITLSFSWWVLIFGMFGYVACG---GCPRTWTGFSMEAFSDLWEFVKL 277
                 LG  G  +  +  +W++   +  Y+         R +  F    ++ L E ++L
Sbjct: 175 KFGLPALGGAGAGLATAIVYWLMFLALAFYIRRHKRFRRYRLFARFWRPDWARLKELLRL 234

Query: 278 SVASGVMLCLE 288
            +  G+ +  E
Sbjct: 235 GLPIGLTIFFE 245

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score =   99 bits (250), Expect = 2e-23
 Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 8/281 (2%)

Query: 43  LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNF 102
           L   F    K L  +  P I   +      ++     GHLG   LAA+ +AN +      
Sbjct: 8   LEGPFKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-I 66

Query: 103 GLLLGMASALETLCGQAFGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLG 161
            + +G+ +    L  QA G          + +   + L +  +L + L  FA P+L+LLG
Sbjct: 67  AIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLG 126

Query: 162 QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLF 221
            P +V EL+      +L         F L   L+    T    ++ L   L+++++ +L 
Sbjct: 127 APAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLL 186

Query: 222 VYKM--QLGLIGTAITLSFSWWVLIFGMFGYVA--CGGCPRTWTGFSMEAFSDLWEFVKL 277
           ++ +   LG+ G A+    + W+    +  Y+                     L E ++L
Sbjct: 187 IFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRL 246

Query: 278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSI 318
            +   +    E+  + +L L    L    +A  A  I + I
Sbjct: 247 GLPIFLESLSESLGFLLLTLFVARLGTVALA--AYGIALRI 285

Length = 455

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 83.8 bits (208), Expect = 8e-18
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 2/201 (0%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASA 111
           K++  +  P     ++    F++   F   LG + LAA  IA  +  +F F    G+A A
Sbjct: 241 KEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIA-SFIFMPPFGIAQA 299

Query: 112 LETLCGQAFGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELS 170
           +  L GQ  G   Y       + +  + L I  ++ L L +F  P++ L     +V  L+
Sbjct: 300 VTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALA 359

Query: 171 GVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLI 230
            ++ L           QF L   L+      +   +SL S     L     +    LGL 
Sbjct: 360 VILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLA 419

Query: 231 GTAITLSFSWWVLIFGMFGYV 251
           G  I    S  +    +   +
Sbjct: 420 GVWIGFPLSLILRAILLLLRL 440

Length = 455

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 78.3 bits (194), Expect = 5e-16
 Identities = 61/277 (22%), Positives = 113/277 (40%), Gaps = 12/277 (4%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVIT-QAFAGHLGDLELAAISIANTVVVAFNFGLLLGMAS 110
           +++  I  P + S M S ++   T +AF G L ++ LAA   A  +  A    L  G++S
Sbjct: 5   REILKIALPLVLS-MLSQTVMGFTDRAFLGRLSEVALAASGPAGVLYFAI-LMLFFGLSS 62

Query: 111 ALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVL-KLLGQPDDVAEL 169
            ++    Q  G  +Y  +G  + +      +   LL  L   A+P+L  LLG   +V  L
Sbjct: 63  GVQVFVAQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEVQAL 122

Query: 170 SGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKM---- 225
                   +           L+ F     +T V+   +L  ++V++++ +  ++      
Sbjct: 123 EVEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFGKLGFP 182

Query: 226 QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFS--DLWEFVKLSVASGV 283
            +G+ G AI    +  V +      +      R +       F    L   ++L + SG+
Sbjct: 183 AMGIAGAAIATVIAEAVSLLFFLLLLFRRKNRRRFGLRRAWRFDRELLRRILRLGLPSGL 242

Query: 284 MLCLENWYYRVLILMTGNLQNAKIAVDALSICMSING 320
              L+   + V  L+ G L   ++A  A +I  SIN 
Sbjct: 243 QFFLDVGAFTVFFLLIGRLGTTELA--ATNIVFSINS 277

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 52/268 (19%), Positives = 106/268 (39%), Gaps = 13/268 (4%)

Query: 59  GPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQ 118
            P + S +      ++   F G L    LAA+ +A   ++A    L +G++     L  Q
Sbjct: 2   APLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLA-FPLIALLIALGVGLSVGTSALISQ 60

Query: 119 AFGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWL 177
           A G          + +S  + + +  +L   L  F+  +L LLG  ++V EL+      L
Sbjct: 61  AIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTIL 120

Query: 178 LPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQ---LGLIGTAI 234
           +           L   LQ +  T     +S+ S L+++L+  L ++ +    LG+ G A+
Sbjct: 121 ILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAAL 180

Query: 235 TLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAF----SDLWEFVKLSVASGVMLCLENW 290
               S+ +    +  Y+  G   +    F +         L   +++ + S +   L + 
Sbjct: 181 ATVISYVIGALLLLIYLRKG---KKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSL 237

Query: 291 YYRVLILMTGNLQNAKIAVDALSICMSI 318
              +++ +      A  A+ A ++   I
Sbjct: 238 GLLIIVAIVAAFGGA-AALAAYTVAFRI 264

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 2/192 (1%)

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
            I + + S  + +I    A   G   LAA ++A  +  +  F   LG+A A   + GQ  
Sbjct: 229 AIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIA-SLAFMPALGLAQAALPVVGQNL 287

Query: 121 GGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLP 179
           G   +         +  I L I  VL L + +F  P+L L     +  EL+      L  
Sbjct: 288 GAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLELAVSYLRILAI 347

Query: 180 VHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFS 239
            +      + LQ   Q+  +T+    VSL S  V  L     +  + LGL G  + L  S
Sbjct: 348 YYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVLAYLGLGLYGIWLALVIS 407

Query: 240 WWVLIFGMFGYV 251
             +    +  + 
Sbjct: 408 LILAALVLLLFF 419

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 65.6 bits (161), Expect = 7e-12
 Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 25/281 (8%)

Query: 44  TRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTV---VVAF 100
           T+++  E+++L  +  P + +++A  +M  +    AG +   +LAA++I  ++   V+ F
Sbjct: 4   TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILF 63

Query: 101 NFGLLLGMASALETLCGQAFGGKKYYMLG-VYMQRSWIVLFICCVLLLPLYVFASPVLKL 159
             GLLL    AL  +  Q  G  +   +     Q  W+ LF+  +++L LY    P+L +
Sbjct: 64  GHGLLL----ALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNM 119

Query: 160 LGQPDDVAE-----LSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVH 214
           +    +VA+     L  +  LW +P +  +     L+ F+    KT     +    LL++
Sbjct: 120 MNLEPEVADIAVGYLHAL--LWGIPAYLLY---QVLRSFIDGLGKTKPTMVIGFLGLLIN 174

Query: 215 LLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGG---CPRTWTGFSMEA 267
           + + ++F+Y      +LG +G  +  +  +WV+   M  Y+         R + G     
Sbjct: 175 IPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPD 234

Query: 268 FSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIA 308
           ++ +   +KL +  G+ +  E   + V+ L+   L    +A
Sbjct: 235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVA 275

Length = 456

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 62.1 bits (152), Expect = 1e-10
 Identities = 57/283 (20%), Positives = 117/283 (41%), Gaps = 25/283 (8%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASA 111
           +++W +  P I   +    + ++     G LG   +AA+ +A  V       LLL +  A
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQV-----LWLLLVLNMA 55

Query: 112 LET----LCGQAFGGKKYYMLGVY-MQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDV 166
           L T    L  Q++G   Y        Q   + L +   L L   +FA P+L+LLG   +V
Sbjct: 56  LGTGTVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEV 115

Query: 167 AELS---GVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVY 223
             L+     + L  +P  F           L+    T    ++ +   ++++++ ++ ++
Sbjct: 116 IALALTYLRIVLLGIPFFFLS---LVGNAALRGAGDTKTPMYIMIIVNVLNIVLDYVLIF 172

Query: 224 KM----QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRT--WTGFSMEAFSDLWEFVKL 277
            +     LG+ G A+    S  V    +   +  G  P    + GF ++    + + +++
Sbjct: 173 GLWGFPGLGVAGAALATVISRVVGALLLLFLLLRGRLPIKISFKGFRLD-RKIIKKLLRI 231

Query: 278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSING 320
            + +G+   L +  + VL+ +  +   A +A  A  I + I  
Sbjct: 232 GLPAGLEQLLRSLGFLVLLAIVASYGTAALA--AYQIGLRIES 272

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 12/198 (6%)

Query: 51  SKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMAS 110
              L+ +  P     +    +  I         D  +AA+ +AN ++      +   +++
Sbjct: 2   KLSLFALAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFLLIL-IFSFIST 60

Query: 111 ALETLCGQAFGGKKYYMLG-VYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAEL 169
               L  Q  G K       +        L +  V  L L  F + +L+L+G P ++  L
Sbjct: 61  GTSILIAQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLAL 120

Query: 170 SGVVSLWLLPVHFSFAFQ---FPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKM- 225
               S +L  V  S   Q     L   L+S  +T +  +VSL   +++++  +L ++   
Sbjct: 121 G---STYLRIVGGSLFLQALSLTLSAILRSHGRTKIPMYVSLIMNILNIVGNYLLIFGWF 177

Query: 226 ---QLGLIGTAITLSFSW 240
              +LG+ G AI+   S 
Sbjct: 178 GLPKLGVAGVAISTVISR 195

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 9/163 (5%)

Query: 77  AFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRS 135
              G  LG   LAA+S  + ++      + +G++     L  Q  G K        +   
Sbjct: 28  LIVGQFLGVAALAAVSNGSPIIFLLT-AIGMGLSMGGTILISQYIGAKDEEKAKKAVGTL 86

Query: 136 WIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELS---GVVSLWLLPVHFSFAFQFPLQ 191
            ++  I  ++L  L  +FA P+L+L+  P ++ EL+     +    +P  F F +     
Sbjct: 87  LVLFLILGIVLTILGLLFAPPILRLMNTPAEILELAVSYLRICFLGIP--FIFGYNA-YS 143

Query: 192 RFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAI 234
             L+    +    +  + + ++++++  LF+    +G+ G A+
Sbjct: 144 AILRGLGDSKTPLYFVIIACVLNIILDLLFIAVFHMGVAGAAL 186

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 45  RRFWIESKKLWHIVG---PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFN 101
           + F  + + L  I+    P+   +      F+I  +     G +  AA  IAN  + +F 
Sbjct: 215 KDFRFDKEILKEILKIGLPSALQQSLVSISFLIINSIVNSYGVVASAAYGIANK-INSFA 273

Query: 102 FGLLLGMASALETLCGQAFGGKKYY-MLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLL 160
           F     +  A+ T   Q  G  K             I L I  +++L ++ FA  +L L 
Sbjct: 274 FLPPSAIGQAVSTFVAQNIGAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLF 333

Query: 161 GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLVTW 219
               +V E+           +  F   F      +   KT     +S+  L LV + + +
Sbjct: 334 TSDPEVIEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAY 393

Query: 220 LFVYKMQLGL--------IGTAITLSFSWWVLIFGM 247
           L      LGL        I   ++          G 
Sbjct: 394 LLSRLTGLGLFGIWLAMPISNILSAIICIIYYRKGR 429

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 36/186 (19%), Positives = 78/186 (41%), Gaps = 5/186 (2%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFN-FGLLLGMA 109
           K       P I   + +    ++   F GH  G L LAA+++   +++     GL++G+ 
Sbjct: 4   KLFLKFALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGVG 63

Query: 110 SALETLCGQAFGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDVAE 168
            A  +L  +  G             +  + L +  +L +   +F  P+L+LLG   ++  
Sbjct: 64  GA--SLISRRLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELLP 121

Query: 169 LSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG 228
            +      +L           L   L+++ K  +     L   ++++++  LF++ + LG
Sbjct: 122 YAVDYLRIILLGAPFTILSSVLNNLLRAEGKPKLAMLGMLIGAVLNIILDPLFIFVLGLG 181

Query: 229 LIGTAI 234
           + G A+
Sbjct: 182 IAGAAL 187

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 5/183 (2%)

Query: 52  KKLWHIVGPTIFSRMA-SYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMAS 110
           KK+  I  P+    ++ + S  VIT AF   LG   LAA + A+  +  F F   L +  
Sbjct: 228 KKILKIGLPSAGEELSYNLSQTVIT-AFIARLGTAALAARTYASN-ISMFVFLFSLAIGQ 285

Query: 111 ALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLL-LPLYVFASPVLKLLGQPDDVAEL 169
           A + + G   G   +      + +S  +  +  + + L L +F  P+L L     ++  L
Sbjct: 286 ATQIIVGHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEIIAL 345

Query: 170 SGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLVTWLFVYKMQLG 228
              + L  + +    AF   L   L++         + + S+  + + + +L    + LG
Sbjct: 346 GKTLLLISILLEPGRAFNIVLIGSLRAAGDARFPVLIGIISMWGISVPLAYLLGIVLGLG 405

Query: 229 LIG 231
           L+G
Sbjct: 406 LLG 408

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 50/200 (25%), Positives = 78/200 (39%), Gaps = 12/200 (6%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVV-VAFNFGLLLGMAS 110
           KKL  I  P    ++     F++  A     G   LAA  I   +  +AF  G    MA+
Sbjct: 226 KKLLRIGLPAGLEQLLRSLGFLVLLAIVASYGTAALAAYQIGLRIESLAFMPGFGFSMAA 285

Query: 111 ALETLCGQAFGGKKYYMLGVYMQRSWIVLFIC-CVLLLPLYVFASPVLKLLGQPDDVAEL 169
           +  TL GQ  G         Y +R+  +  +   +L L L++FA P+  L     +V EL
Sbjct: 286 S--TLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDPEVIEL 343

Query: 170 SGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLVTWLFVYKMQLG 228
             +    +       A  F L   L+    T     ++L S+ LV L + +L  + + LG
Sbjct: 344 GVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFVLGLG 403

Query: 229 LIGTAITLSFSWWVLIFGMF 248
           L G        W  +     
Sbjct: 404 LTGI-------WLAMFVDTI 416

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 46/177 (25%), Positives = 67/177 (37%), Gaps = 3/177 (1%)

Query: 62  IFSRMASY-SMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
           IF R  +  + F+   A A  LGD+ LAA  I     +  ++  L G A A E L G+A 
Sbjct: 234 IFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLLSSY-FLDGFAYAAEALVGRAL 292

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLL-LPLYVFASPVLKLLGQPDDVAELSGVVSLWLLP 179
           G           +R         VLL L  ++   P+++L      V  L+     WL  
Sbjct: 293 GAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPAVLALAATYLPWLAL 352

Query: 180 VHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITL 236
           +    A  F L         T  +    L SL V L + +L V       +  A+ L
Sbjct: 353 LPPIGALAFVLDGIFIGATDTRYLRNSMLVSLAVFLPLLFLLVPLWGNHGLWLALIL 409

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 20/198 (10%)

Query: 63  FSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLL-----GMASALETLCG 117
           F  + ++++F +     G LG  ELAA +I       F+   L      G+  A+ +L G
Sbjct: 245 FLDVGAFTVFFL---LIGRLGTTELAATNIV------FSINSLAFLPMIGLGIAVSSLVG 295

Query: 118 QAFGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLW 176
           QA G  +  +     +R   + L    +L +   +F   +L +     D A ++ +    
Sbjct: 296 QALGAGRPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIFTPGADFALIAELAVPL 355

Query: 177 LLPVHFSFAFQFPLQRFLQSQLK----TMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGT 232
           L  V     F      F  + L+    T  +    L    ++LL     +  +  GL G 
Sbjct: 356 LRFVAAYILFDALALVFAGA-LRGAGDTRFVMLAELIVAWLYLLPPAYLLVVLGAGLAGA 414

Query: 233 AITLSFSWWVLIFGMFGY 250
               +    VL       
Sbjct: 415 WTVETVYVIVLALIFLLR 432

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 20/208 (9%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDL-ELAAISIA----NTVVVAFNFGLLL 106
           +++  +  P I S +    + ++  A  GHLG    L A+++     NT+   F F   L
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGF---L 59

Query: 107 GMASALETLCGQAFGGKKYY-MLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDD 165
            M +    L  QA G       + + ++   + L I  +L+L      +  L LLG    
Sbjct: 60  RMGTT--GLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAA 117

Query: 166 VAELSGV---VSLWLLP-VHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLF 221
           VA L+     + +   P V  ++        + +    T     + +   +V++++  LF
Sbjct: 118 VAALARQYLRIRILGAPAVLLNYVAT----GWFRGLQDTRTPLILQIVGNVVNIVLDPLF 173

Query: 222 VYKMQLGLIGTAI-TLSFSWWVLIFGMF 248
           V+ +  G+ G A+ T+   +   + G++
Sbjct: 174 VFGLGWGVAGAALATVIAQYLGALLGLW 201

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 11/202 (5%)

Query: 39  SAGTLTRRFWIESKKLWHIVGPTI---FSRMASY-----SMFVITQAFAGHLGDLELAAI 90
              +L +   +  K    I+   +   F              V+     G+ GD+ +AA 
Sbjct: 206 RGKSLLKLSLLRFKLSLKIIKEILALGFPSFLMQLSSSVVTIVLNLTLLGYGGDIGVAAF 265

Query: 91  SIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLL-LPL 149
            I   ++  F F  L+G++  L+ + G  +G   Y  +   ++ + IV  I  ++L L L
Sbjct: 266 GIVTRIL-TFLFLPLIGLSQGLQPIIGYNYGAGNYDRVKQALKLALIVALIYGLVLFLIL 324

Query: 150 YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLA 209
            +F   ++ L     ++  L+  +    L           L  + Q+  K    A +SL 
Sbjct: 325 LLFPEQIVSLFTDDPELIALAARILRIFLLAFPLAGINIVLSGYFQAIGKAKRAALLSLL 384

Query: 210 SLLVHLLVTWLFVYKMQLGLIG 231
              +  L+  L +     GL G
Sbjct: 385 RQGL-FLIPLLLILPRLFGLDG 405

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASA 111
           K+L  +  P  F  +     F +       LG + LAA  IA   V +  F    G   A
Sbjct: 216 KRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALN-VESLLFMPAFGFGIA 274

Query: 112 LETLCGQAFGGKKYYMLGVYMQRSWIV-LFICCVLLLPLYVFASPVLKLLGQPDDVAELS 170
           +  L GQA G           + +  + L +  VL + L +F   + +L     +V EL+
Sbjct: 275 VSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELA 334

Query: 171 GVVSLWLL 178
            +  +++ 
Sbjct: 335 AIYLIFVA 342

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 6/188 (3%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASA 111
           KK+ HI  P I   + S    ++ +AF G +     +A+    T       G L  ++  
Sbjct: 1   KKINHIAIPLILQNLVSQLQMLVDRAFLGRISIRYYSAVGNVTTPFNTI-TGFLGSISIG 59

Query: 112 LETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVF-ASPVLKLLGQPDDVAELS 170
              L  Q+ G K    +  Y   S +   I  V+L  L++F A  +  L G    +   S
Sbjct: 60  FTILGSQSVGAKDIKRINDYAISSIVYNSIIGVILFLLWLFGARIIFVLFGVDGQILGYS 119

Query: 171 GVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVY-KM---Q 226
                            F     LQ   +T  I +  +   L+++++ ++ ++      +
Sbjct: 120 INYVRIFSIYLLLLGILFTFSSILQGIGETKPIMYGGIIKNLLNVILDYVLIFGNFGFPR 179

Query: 227 LGLIGTAI 234
           LG+IG AI
Sbjct: 180 LGIIGAAI 187

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 3/206 (1%)

Query: 41  GTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAF 100
             + R      K+L     P + S + ++    I     G         I  A   +V+ 
Sbjct: 202 RPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL 261

Query: 101 NFGLLLGMASALETLCGQAFG-GKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKL 159
              +   +   L     +A+  G +  +  +  Q   ++L I    LL L + A P++ L
Sbjct: 262 LLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITL 321

Query: 160 LGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTW 219
           L      +  +  +   L       +        LQ+  K  ++  +SL S L++L++  
Sbjct: 322 LFGEKYAS--AAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 220 LFVYKMQLGLIGTAITLSFSWWVLIF 245
           L + +  L     A     +  +L+F
Sbjct: 380 LLIPRFGLIGAAIATASVIALALLLF 405

Length = 480

>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 132 MQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQ 191
           ++ + ++     V L    V A P+  LL    +   +  +++  +L      + Q    
Sbjct: 318 LRLTLLIGLPAAVGL---AVLAEPINTLLFGDSEGGLILQILAPSILF----LSLQQVTA 370

Query: 192 RFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYV 251
             LQ   K  +     L  LLV +++ ++ +     G+ G AI     + V        +
Sbjct: 371 AILQGLGKVKIPVINLLIGLLVKIVLNYVLIP--IFGIYGAAIATVIGFLVAALLNLRAL 428

The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 434

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 105 LLGMASALETLCGQAFGGKKY-YMLGVYMQRSWIVLFICCVLLLPLYVFASPVL-KLLGQ 162
           +  ++SAL T+ GQ +G   Y  ML + M    + + +  VL+L  YV  +P L  L   
Sbjct: 284 IFAISSALLTIAGQNWGRGNYDRMLQILMTAVILGIVVVLVLVL-GYVLVAPWLFSLFTT 342

Query: 163 PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLA-SLLVHLLVT--- 218
             +V   + +    +       A    +  F Q+  K    AW SL  +L+ H+ ++   
Sbjct: 343 VPEVVAYAVLQVRTMALALPFVAISILVTEFFQAIGK----AWPSLLLTLIRHVFLSVPV 398

Query: 219 -WLFVYKMQLGLIG 231
            +L  Y    G+ G
Sbjct: 399 VYLLAYVFGKGITG 412

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 33/209 (15%)

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASAL-------- 112
           T F +MA Y++      + G LG   +AA+  A         G  + +A AL        
Sbjct: 17  TSFIQMA-YNL--TDMFWVGRLGSDAVAAVGTA---------GFFVWLAYALALLSKIGA 64

Query: 113 ETLCGQAFGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSG 171
           +    Q+ G K       Y + +  + L +  +  L L +FA P++      D       
Sbjct: 65  QVKVSQSIGAKDEKEARKYARNALQLNLLLGILYGLLLLLFAKPLIGFFNLGDAEVISLA 124

Query: 172 V----VSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKM-- 225
           +    +    L   FSF           +   +     ++   L++++++  L ++    
Sbjct: 125 ITYLRIVALGLI--FSFLNPV-FTGIFNALGDSKTPFIINAIGLVLNIILDPLLIFGFGP 181

Query: 226 --QLGLIGTAITLSFSWWVLIFGMFGYVA 252
              LG+ G A+    +  + +F +F Y  
Sbjct: 182 FPALGVAGAALATVLAQAI-VFLLFLYAL 209

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 40/211 (18%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 52  KKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLG---- 107
           +++  ++ P +     S    ++    A  L +  ++A+  A+ +     + L LG    
Sbjct: 215 RRVLKLMLPALLGVSVSQINLLVDTILASFLPEGSISALYYADRL-----YQLPLGIFGV 269

Query: 108 -MASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLP----LYVFASPVLKLLGQ 162
            +A+AL     +             + R    L +   LLLP    L V A P+++LL +
Sbjct: 270 AIATALLPRLSRLAAAGDLDEFRRTLSRG---LRLVLFLLLPAAVGLIVLAEPIVRLLFE 326

Query: 163 -----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLV 217
                 +D    +  +         +FA    L R   +   T     +++ ++ V++L+
Sbjct: 327 RGAFTAEDTLMTASAL-AAYALGLPAFALVKLLSRAFYALKDTKTPVKIAVIAVAVNILL 385

Query: 218 TWLFVYKMQLGLIGTAITLSFSWWVLIFGMF 248
             L +  +  G +G A+  S S WV    + 
Sbjct: 386 NLLLIKPL--GHVGLALATSLSAWVNALLLL 414

Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 420

>gnl|CDD|234052 TIGR02900, spore_V_B, stage V sporulation protein B

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 118 QAFGGKKYYMLGVYMQRSWIVLFICCVLLLP----LYVFASPVLKLLGQPDDVAELSGVV 173
           +A   K Y       +R    + I  +L L     L V    +  L     D      V+
Sbjct: 301 EAMAKKNYS---SIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVL 357

Query: 174 SLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTA 233
           +    P  +   F  PLQ  LQ   K  V    SL   +V +++ ++      + + G A
Sbjct: 358 AP-SFPFLY---FSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYA 413

Query: 234 ITLSFS 239
           IT   +
Sbjct: 414 ITFIIT 419

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree [Cellular processes, Sporulation and germination]. Length = 488

>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 12/165 (7%)

Query: 78  FAGHLGDLELAAISIANTV---VVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQR 134
           FAG +    LAA+S++  +   ++A   G+  G  +    L G A G         Y  +
Sbjct: 35  FAGKISTEALAALSLSFPIFFIIIAIGVGIGTGTTA----LIGNALGAGDRRKARRYAAQ 90

Query: 135 SWIVLFIC-CVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRF 193
                 I   +L +     A P+ +LLG   D  +L+      +      F   F L   
Sbjct: 91  GLSFGIILAILLTVIGLFAAPPLFRLLGAEGDYLDLALEYMDVIFAGSIFFLLNFGLNGI 150

Query: 194 LQSQLKTMVIAWVSLASLLVHLLVTWLFVYKM----QLGLIGTAI 234
           L +Q  T       +    +++++  LF++       +G+ G A+
Sbjct: 151 LNAQGDTKSYRNFLIIGFFLNIILDPLFIFGGGGIPAMGVSGIAL 195

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 440

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK01766	456	multidrug efflux protein; Reviewed	100.0
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	100.0
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.97
PRK00187	464	multidrug efflux protein NorA; Provisional	99.93
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.92
PRK01766	456	multidrug efflux protein; Reviewed	99.91
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.91
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.91
PRK10189	478	MATE family multidrug exporter; Provisional	99.91
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.9
PRK15099	416	O-antigen translocase; Provisional	99.9
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.89
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.85
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.84
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.82
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.82
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.8
PRK15099	416	O-antigen translocase; Provisional	99.78
PRK10459	492	colanic acid exporter; Provisional	99.75
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.74
COG2244	480	RfbX Membrane protein involved in the export of O-	99.7
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.67
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.66
PRK10459	492	colanic acid exporter; Provisional	99.56
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.49
COG2244	480	RfbX Membrane protein involved in the export of O-	99.47
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.45
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.14
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	99.03
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.89
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.72
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.32
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.72
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	97.5
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.81
COG4267	467	Predicted membrane protein [Function unknown]	94.59
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	92.22

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=9.5e-42  Score=321.10  Aligned_cols=298  Identities=20%  Similarity=0.239  Sum_probs=277.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchh
Q 018774           47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY  126 (350)
Q Consensus        47 ~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~  126 (350)
                      ..+..|+++++++|++++++.+.+++.+|++++||+|++++|+.++++++..++ ..+..+++.|..+.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            567899999999999999999999999999999999999999999999999985 7899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHH
Q 018774          127 MLGVYMQRSWIVLFICCVLLL-PLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (350)
Q Consensus       127 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (350)
                      ++++..+++++++++++++.. +.+++.++++.+++.++|+.+.+.+|+++..++.|+..+...+.+++|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            999999999999999997655 4577999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cC-CccchHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCCCChHhHHhHHHHHHHHHHH
Q 018774          206 VSLASLLVHLLVTWLFVYK-MQ-LGLIGTAITLSFSWWVLIFGMFGYVACGGC--PRTWTGFSMEAFSDLWEFVKLSVAS  281 (350)
Q Consensus       206 ~~~~~~~~~i~l~~~li~~-~~-~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~  281 (350)
                      .++++.++|+++||+|+++ ++ +|+.|+++||++++++..++..+++++++.  .....+..+.+++.+|+++++|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 46 999999999999999999999999888752  3333344466788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          282 GVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      +++...+...+.+.+.+++++|+.  ++|+|+++.++.++.++++.|+++|+++++++.++.+|.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~  314 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYK  314 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999964  5679999999999999999999999999999999998865

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=8.2e-39  Score=300.95  Aligned_cols=296  Identities=14%  Similarity=0.119  Sum_probs=266.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchh
Q 018774           48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY  126 (350)
Q Consensus        48 ~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~l-g~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~  126 (350)
                      +++.|+++++++|.++++++..+++.+|+.++|++ |++++|+.+++.++.+.. ..+..+++.+..+.+||++|+||+|
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            46789999999999999999999999999999998 677999999999998875 6788999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHH
Q 018774          127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (350)
Q Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (350)
                      ++++..++++.+++++++++.+. ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            99999999999999999887655 55888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc-CCC-cccCCCChHh-HHhHHHHHHHHHHHH
Q 018774          206 VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG-GCP-RTWTGFSMEA-FSDLWEFVKLSVASG  282 (350)
Q Consensus       206 ~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~~~~~~~~~p~~  282 (350)
                      .++++.++|++++++++++.++|+.|+++|+.+++++..+...++++++ +.+ .+.+.+ +.+ ++.+|+++++|.|.+
T Consensus       164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~  242 (441)
T PRK10367        164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIM  242 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHH
Confidence            9999999999999999998899999999999999999888777766654 222 111111 122 246899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       283 l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      ++...+...+.+.+.+++++|+.  ++|||+++.++.++.++++.|+++|+++++++.++.+|.|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~  305 (441)
T PRK10367        243 LRSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGS  305 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999964  5779999999999999999999999999999999999876

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=3.3e-38  Score=299.31  Aligned_cols=299  Identities=17%  Similarity=0.133  Sum_probs=269.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch
Q 018774           46 RFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY  125 (350)
Q Consensus        46 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~  125 (350)
                      .++++.|+++++++|.+++++...+.+.+|+++++++|++++|+++++.++.+.+ ..+..|++++..+++||++|++|+
T Consensus         4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~   82 (464)
T PRK00187          4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI   82 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence            3467899999999999999999999999999999999999999999999998875 678899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHH
Q 018774          126 YMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (350)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (350)
                      |++++..++++.+.++++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+...+++++|+.||++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  162 (464)
T PRK00187         83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV  162 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999988766666779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcC-C-Cccc-CCCChHhHHhHHHHHHHH
Q 018774          206 VSLASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGG-C-PRTW-TGFSMEAFSDLWEFVKLS  278 (350)
Q Consensus       206 ~~~~~~~~~i~l~~~li~~~----~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~  278 (350)
                      .++++.++|+++||+|+++.    ++|+.|+++|+.+++....+...+++++++ . +.++ +++.+.+++.+|++++++
T Consensus       163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg  242 (464)
T PRK00187        163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG  242 (464)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence            99999999999999999864    589999999999998887776666665542 1 1221 222344577899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          279 VASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       279 ~p~~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      +|.+++...+...+.+.+.+++++|+.  ++|+++++.++..+.++++.|+++|.++++++.++.+|.|
T Consensus       243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~  309 (464)
T PRK00187        243 LPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLL  309 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            999999999999999999999999975  5669999999999999999999999999999999999875

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=8.9e-37  Score=289.82  Aligned_cols=296  Identities=13%  Similarity=0.172  Sum_probs=265.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhH
Q 018774           49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML  128 (350)
Q Consensus        49 ~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~  128 (350)
                      +..|+++++++|.++++++..+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++.++++||++|+||+|++
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~  104 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA  104 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            4589999999999999999999999999999999999999999999998874 788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHH
Q 018774          129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLG--QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (350)
Q Consensus       129 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (350)
                      ++..++++.+++.++++.+++ +.+.++++.++.  .|+|+.+.+..|+++..++.|+..+...+.+++|+.||++.+++
T Consensus       105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  184 (478)
T PRK10189        105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL  184 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence            999999999999999887655 668889998884  68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHHhc-C--CCcccCC-CChHhHHhHHHHHHH
Q 018774          206 VSLASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACG-G--CPRTWTG-FSMEAFSDLWEFVKL  277 (350)
Q Consensus       206 ~~~~~~~~~i~l~~~li~~~----~~G~~G~a~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~  277 (350)
                      .++++.++|++++++++++.    ++|+.|+++|+.+++++..++..+++.++ +  .+.++++ +.+.+++.+|+++++
T Consensus       185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i  264 (478)
T PRK10189        185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI  264 (478)
T ss_pred             HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence            99999999999999999864    79999999999999999888776665543 2  2222222 122357789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       278 ~~p~~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      |+|.+++.......+.+.+.+++++|+.  ++|||+++.++.++.++++.|+++|+++++++.++.+|.|
T Consensus       265 G~P~~~~~~~~~~~~~~~~~~~~~~G~~--~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~  332 (478)
T PRK10189        265 GIPASIESVLFNGGKLLTQMFVAGMGTS--VIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIA  332 (478)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999888888899999964  5779999999999999999999999999999999998865

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=2e-36  Score=286.51  Aligned_cols=298  Identities=16%  Similarity=0.131  Sum_probs=269.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchh
Q 018774           48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY  126 (350)
Q Consensus        48 ~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~l-g~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~  126 (350)
                      ++..|+++++++|.+++++...+++.+|+.+++++ |++++++++++.++.++. ..+..+++.+..++++|++|+||+|
T Consensus         8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~   86 (453)
T PRK09575          8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE   86 (453)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence            35789999999999999999999999999999995 999999999999998874 6788899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHH
Q 018774          127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (350)
Q Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (350)
                      ++++..++++.++++++++..++ +.+.++++.+++.|++..+.+.+|+++..++.|+..+...+..++|+.|+++.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  166 (453)
T PRK09575         87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG  166 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            99999999999999999887655 66899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccC-CCChHhHHhHHHHHHHHHHHHHH
Q 018774          206 VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWT-GFSMEAFSDLWEFVKLSVASGVM  284 (350)
Q Consensus       206 ~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~  284 (350)
                      .++++.++|+++++++++.+++|+.|+++|+.+++++..++.++++++++.+.+++ +..+.+++.+|+++++|+|.+++
T Consensus       167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~  246 (453)
T PRK09575        167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM  246 (453)
T ss_pred             HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence            99999999999999999988899999999999999999888777776553333332 12234567889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      ...+...+.+.+.+++++|+. .++|++++..++..+.+++..|+++|+++++++.++.+|.|
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~  308 (453)
T PRK09575        247 YLYGSFVVALHNRLFMEYGSA-LTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYD  308 (453)
T ss_pred             HHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChH
Confidence            999999999999999999963 35779999999999999999999999999999999999876

>PRK01766 multidrug efflux protein; Reviewed

Probab=100.00  E-value=8.6e-35  Score=276.23  Aligned_cols=300  Identities=18%  Similarity=0.274  Sum_probs=267.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 018774           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK  124 (350)
Q Consensus        45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~  124 (350)
                      +..++.+|+++++++|..++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..|.+||++|++|
T Consensus         5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~   83 (456)
T PRK01766          5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGR   83 (456)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence            45577899999999999999999999999999999999999999999999987764 67889999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHH
Q 018774          125 YYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI  203 (350)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (350)
                      ++++++..++++.+++.++++++++ +.+.++++.+++.|++..+.+..|+++.+++.++..+...+.+++++.||++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  163 (456)
T PRK01766         84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT  163 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            9999999999999999999887665 557788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcC-CC--cccCCCChHhHHhHHHHHH
Q 018774          204 AWVSLASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGG-CP--RTWTGFSMEAFSDLWEFVK  276 (350)
Q Consensus       204 ~~~~~~~~~~~i~l~~~li~~~----~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~  276 (350)
                      ++.++++.++|++++++++++.    .+|+.|+++|+.+++++..++..+++++++ .+  +.+.++.+.+++.+|++++
T Consensus       164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~  243 (456)
T PRK01766        164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK  243 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence            9999999999999999998642    589999999999999999888877776552 21  1222223345678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       277 ~~~p~~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      +++|.+++...+...+.+.+.+++++|+.  ++|++++..++.++.++++.|+++|.++++++.++.+|.|
T Consensus       244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~  312 (456)
T PRK01766        244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTL  312 (456)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            99999999999999999999999999964  4669999999999999999999999999999999888864

>TIGR00797 matE putative efflux protein, MATE family

Probab=100.00  E-value=3.1e-30  Score=236.11  Aligned_cols=285  Identities=24%  Similarity=0.413  Sum_probs=254.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHHHHHHHHHHH
Q 018774           60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL  139 (350)
Q Consensus        60 p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  139 (350)
                      |.+++++...+...+|+.+++++|++++++++++.++..+. ..+..+++++..|.++++.|++|+|+.++..++++.+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999987764 67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Q 018774          140 FICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVT  218 (350)
Q Consensus       140 ~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~  218 (350)
                      .+++++.+++ +.+.+++..+++.+++..+++..++++++++.++..+..+..+.+++.||++...+.++++.+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~  159 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN  159 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence            9999887665 668888888888788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-hcC-CccchHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018774          219 WLFVY-KMQ-LGLIGTAITLSFSWWVLIFGMFGYVACG-GCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVL  295 (350)
Q Consensus       219 ~~li~-~~~-~G~~G~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~  295 (350)
                      +++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.+|++..+.+++.+|++++++.|..+..+...+.+.+.
T Consensus       160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~  239 (342)
T TIGR00797       160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL  239 (342)
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            99887 556 8899999999999999888887777654 34333333334556789999999999999999999999999


Q ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          296 ILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       296 ~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      +.+++.+|++  ++++|+++.++.++..+++.+++++.++..++.++.+|.|
T Consensus       240 ~~i~~~~g~~--~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  289 (342)
T TIGR00797       240 ALLVARLGSI--ALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPK  289 (342)
T ss_pred             HHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            9999999864  4669999999999999999999999999999988777755

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.97  E-value=4e-28  Score=227.38  Aligned_cols=300  Identities=39%  Similarity=0.659  Sum_probs=284.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch
Q 018774           46 RFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY  125 (350)
Q Consensus        46 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~  125 (350)
                      ....+.|++++++.|.++..+.+...+.+++.++||+|+.++++.++++...+...+.+..|+..+..++++|++|++++
T Consensus        22 ~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~  101 (473)
T KOG1347|consen   22 QLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF  101 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence            34789999999999999999999999999999999999999999999999999878899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHH
Q 018774          126 YMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (350)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (350)
                      +......+++..+....+++....+.+.+++...+++|+++...+..|.++..++.+.......+..+++++++..+..+
T Consensus       102 ~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~  181 (473)
T KOG1347|consen  102 TALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLV  181 (473)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHHHH
Q 018774          206 VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVML  285 (350)
Q Consensus       206 ~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  285 (350)
                      +.....++|+++++++++..++|..|++++..++++........+.........|..+..+ ++.++++++.++|.+++.
T Consensus       182 ~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~mi  260 (473)
T KOG1347|consen  182 IGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMI  260 (473)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhee
Confidence            9999999999999999999999999999999999999998888877666667777777766 899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccC
Q 018774          286 CLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDI  346 (350)
Q Consensus       286 ~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  346 (350)
                      .+|+|.+.+..++.+.+++.++++++.++..++....++.+.|++.|+.+-+++-++.++-
T Consensus       261 clE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p  321 (473)
T KOG1347|consen  261 CLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKP  321 (473)
T ss_pred             HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCCh
Confidence            9999999999999999999888899999999999999999999999999999998887653

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.93  E-value=2.1e-23  Score=198.15  Aligned_cols=210  Identities=16%  Similarity=0.180  Sum_probs=191.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccc
Q 018774           44 TRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGK  123 (350)
Q Consensus        44 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~  123 (350)
                      .+.+++..|+++++++|..++++.......+|+.+++++|++++|+++++.++..+. +.+..|++++.+++++|++|+|
T Consensus       228 ~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~  306 (464)
T PRK00187        228 SRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAG  306 (464)
T ss_pred             cCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCC
Confidence            345677899999999999999999999999999999999999999999999998874 7899999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Q 018774          124 KYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ--PD---DVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQ  197 (350)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  197 (350)
                      |+|++++..+.++.++++.+++.+++ +.+.+++.+.+..  ++   |+.+.+..|+++.+++.++..++.++.+.+|+.
T Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~  386 (464)
T PRK00187        307 RLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGL  386 (464)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcc
Confidence            99999999999999999999877655 6688899988853  43   678889999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHH-HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          198 LKTMVIAWVSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       198 g~~~~~~~~~~~~~-~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      ||++.+++.++++. ++++++++++.+.+++|+.|+|+++.+++.+..+.....++++
T Consensus       387 G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~  444 (464)
T PRK00187        387 KDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK  444 (464)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998 9999999999987789999999999999998887776655433

>TIGR01695 mviN integral membrane protein MviN

Probab=99.92  E-value=8.9e-22  Score=189.45  Aligned_cols=286  Identities=14%  Similarity=0.046  Sum_probs=227.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhcccchhhHHH
Q 018774           54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLEL-AAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGV  130 (350)
Q Consensus        54 ~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~-a~~~~a~~l~~~~~~~~~-~g~~~a~~~~~s~~~g~~~~~~~~~  130 (350)
                      +.|-+.-..+++++..+.+++|..++++ +|++++ ++++.+.++.+.+..... .|++++..+...++.+++  |+.++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~   79 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR   79 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence            4677888899999999999999999999 899999 899999999875433333 467888777776654332  67777


Q ss_pred             HHHHHHHHHHHHHH-HHHH-HHHhhHHHHHhc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHH
Q 018774          131 YMQRSWIVLFICCV-LLLP-LYVFASPVLKLL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV  206 (350)
Q Consensus       131 ~~~~~~~~~~~~~i-~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (350)
                      .+.++.......+. +..+ .+++.+++..++  +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (502)
T TIGR01695        80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS  159 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence            77776666654443 3344 455778887877  4567777889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCccchHH--HHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHHH
Q 018774          207 SLASLLVHLLVTWLFVYKMQLGLIGTA--ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVM  284 (350)
Q Consensus       207 ~~~~~~~~i~l~~~li~~~~~G~~G~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~  284 (350)
                      +++..+++++..+++..  ++|..|++  +++++++.+..++.+++.+|++.+  ++...+.+++.+|++++.+.|..+.
T Consensus       160 ~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~p~~~~  235 (502)
T TIGR01695       160 PILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL--LKPRFNFRDPGLKRFLKLFLPTTLG  235 (502)
T ss_pred             HHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--ccCcCCCCChhHHHHHHHHHHHHHH
Confidence            99998887765444444  78999998  999999999888877766655322  1111122456789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH-HhhHhhhhHhhhhhhhhhcccCC
Q 018774          285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQ-ICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      .........++..+.+.+|+++  +++|+.+.++..+... +..+++++..+.+++.++.+|.|
T Consensus       236 ~~~~~~~~~id~~~~~~~~~~~--v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~  297 (502)
T TIGR01695       236 SSASQITLLINTALASFLEIGS--VSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN  297 (502)
T ss_pred             HHHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            9999999999998877777654  5599999999988764 57899999999999999887754

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.91  E-value=1.3e-22  Score=192.72  Aligned_cols=209  Identities=20%  Similarity=0.200  Sum_probs=193.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 018774           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK  124 (350)
Q Consensus        45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~  124 (350)
                      +.+++..|+++++++|..++++.......++..+++++|++++|+++++.++.+.. ..+..|++.+.++.++|++|+||
T Consensus       232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~  310 (456)
T PRK01766        232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGR  310 (456)
T ss_pred             CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence            34567899999999999999999999999999999999999999999999998875 68899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHH
Q 018774          125 YYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI  203 (350)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (350)
                      ++++++..+.++.++..++++.+++ +.+.+++..++..|+++.+.+..|+++..+..++..+..+..+++++.||++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  390 (456)
T PRK01766        311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI  390 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence            9999999999999999999887655 668999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          204 AWVSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       204 ~~~~~~~~-~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      ++.++++. ++++++.+++.+..++|+.|+|+++.+++++..++..+.+.+.
T Consensus       391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~  442 (456)
T PRK01766        391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL  442 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988 7899999998876689999999999999999998776666544

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.91  E-value=2.8e-22  Score=189.15  Aligned_cols=213  Identities=21%  Similarity=0.256  Sum_probs=197.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcc
Q 018774           43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGG  122 (350)
Q Consensus        43 ~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~  122 (350)
                      ..+.+++..|+++++++|..++++.......+-+.+++++|++.+|+++++.++.++. +.+..|++++.++++++++|+
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga  310 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGA  310 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence            4466779999999999999999999999999999999999999999999999999985 789999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchh
Q 018774          123 KKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTM  201 (350)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  201 (350)
                      ||+|++++..+.+..++..+++..+++ +.+.+++..+|..|+|+.+.+..++++..+..++.+.+.+..+.+||.||++
T Consensus       311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~  390 (455)
T COG0534         311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK  390 (455)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence            999999999999999999999887655 6699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018774          202 VIAWVSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCP  257 (350)
Q Consensus       202 ~~~~~~~~~~-~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~  257 (350)
                      .+++.++++. ++.+++.+++.+.. +|..|.|++...++.+..+...+++++++++
T Consensus       391 ~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~  446 (455)
T COG0534         391 IPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR  446 (455)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999988 66788888888743 9999999999999999999888888776433

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.91  E-value=1.2e-21  Score=187.98  Aligned_cols=289  Identities=11%  Similarity=0.106  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHHHHH
Q 018774           55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ  133 (350)
Q Consensus        55 ~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~~~~  133 (350)
                      .|-+.|..++++...+.+++|+.+++| +|++++|+++.+.++...+......|++++..+.++|..|++|+++.++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            467899999999999999999999999 7999999999999988865444456899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Q 018774          134 RSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLL  212 (350)
Q Consensus       134 ~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  212 (350)
                      .++.+.++.+++.+++ +.+.+++...+..+++.    ..++++.++..++..+......++|+.+|.+.....+.+..+
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            9999999999887655 55677766666555543    246788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-----cCCccchHHHHHHHHHHHHHHHHHHHHHhc-CCC--cccCCCChHhHHhHHHHHHHHHHHHHH
Q 018774          213 VHLLVTWLFVYK-----MQLGLIGTAITLSFSWWVLIFGMFGYVACG-GCP--RTWTGFSMEAFSDLWEFVKLSVASGVM  284 (350)
Q Consensus       213 ~~i~l~~~li~~-----~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~p~~l~  284 (350)
                      ++++++..++..     .++|+.|+++++.+++.+..++..++++++ +.+  ..+.+..+.+++.+|++++.++|..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~  237 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS  237 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence            988776665532     246788889999999988888776665544 212  222222234567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC----CCh-hhHHHHH----HHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          285 LCLENWYYRVLILMTGNL----QNA-KIAVDAL----SICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~----g~~-~~~vaa~----~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      .........+++.++++.    |.. ..+.+.+    +++.++..+...+..+++++..+..++.++.+|+|
T Consensus       238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~  309 (488)
T TIGR02900       238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYS  309 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999888887754    211 1111222    34556667777778899999999999998877754

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.91  E-value=6.2e-22  Score=188.32  Aligned_cols=212  Identities=14%  Similarity=0.114  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch
Q 018774           46 RFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY  125 (350)
Q Consensus        46 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~  125 (350)
                      .+++.+|++++++.|..++.+...+...+.+.+++++|++++|+++++.++.++. ..+..|++++.+++++|++|++|.
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~  331 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI  331 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence            4578999999999999999999999999999999999999999999999999875 788999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH
Q 018774          126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA  204 (350)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (350)
                      +++|+..+.+..++++.++.++++ +.+.+++..+|..|+|+.+.+..++++.++..++.+.+.+..+.++|.||++.++
T Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~  411 (478)
T PRK10189        332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM  411 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence            999999999999999998887665 6689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 018774          205 WVSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR  258 (350)
Q Consensus       205 ~~~~~~~-~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~  258 (350)
                      +.++.+. ++.+++.+++.+..++|+.|+|++..+++.+..++..+.+++.++++
T Consensus       412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~  466 (478)
T PRK10189        412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW  466 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            9999988 77788888887766899999999999999999888777776665544

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.90  E-value=1.5e-21  Score=185.06  Aligned_cols=207  Identities=14%  Similarity=0.207  Sum_probs=188.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccc
Q 018774           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGD-LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGK  123 (350)
Q Consensus        45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~-~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~  123 (350)
                      +.+++..|++++++.|..+++....+...+...+++++|+ +++|+++++.++..+. +.+..|++.+.++.+||++|+|
T Consensus       227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~  305 (453)
T PRK09575        227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGAR  305 (453)
T ss_pred             CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCC
Confidence            4567789999999999999999999999999999999985 6899999999998875 7899999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchh
Q 018774          124 KYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ-PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTM  201 (350)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  201 (350)
                      |+|++++..+.++.+++..+++.+++ +.+.+++..++.. |+|+.+.+..|+++.+++.++..+..+..+++|+.||++
T Consensus       306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~  385 (453)
T PRK09575        306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG  385 (453)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999999987665 6689999999985 789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          202 VIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       202 ~~~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      .++..++...++++++.+++..  .+|+.|+|+++.+++.+..++..+.++++
T Consensus       386 ~~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~  436 (453)
T PRK09575        386 KALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWRD  436 (453)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888889988888865  48999999999999999888777766654

>PRK15099 O-antigen translocase; Provisional

Probab=99.90  E-value=7.5e-21  Score=178.66  Aligned_cols=276  Identities=12%  Similarity=0.001  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHHHH
Q 018774           54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYM  132 (350)
Q Consensus        54 ~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~~~  132 (350)
                      +.|-+.....+.+...+.+++-..++.+ +|++++|.++...++...+......|++++....++|+  ++|+++.++.+
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            4566777788888888888888889999 79999999999998888655555788888888889887  67889999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Q 018774          133 QRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL  211 (350)
Q Consensus       133 ~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  211 (350)
                      ..++.+.++.++++++. +.+.+++...+..+++.    ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~  156 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS  156 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998886655 66788888877766643    23566666666677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCChHhHHhHHHHHHHHHHHHHHHHHHHH
Q 018774          212 LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG-GCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENW  290 (350)
Q Consensus       212 ~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~  290 (350)
                      ++|+.+ +++.+. ..|+.|+++|+.+++.+..+...++++|+ +.+.+..++ +.+++.+|+++++|.|..+++....+
T Consensus       157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i  233 (416)
T PRK15099        157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV  233 (416)
T ss_pred             HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887 444442 24999999999999998887776666654 211111111 23567789999999999999999999


Q ss_pred             HHHHHHHHHh-cCCChhhHHHHHHHHHHHHH-HHHHHhhHhhhhHhhhhhhh
Q 018774          291 YYRVLILMTG-NLQNAKIAVDALSICMSING-WESQICYYSISGDLDCNWCL  340 (350)
Q Consensus       291 ~~~~~~~~~~-~~g~~~~~vaa~~i~~~~~~-~~~~~~~~~~~a~~~~~~~~  340 (350)
                      .....+.+++ .+|+.  ++++|+.+.++.+ +...++.+++++..+.+++.
T Consensus       234 ~~~~~~~~l~~~~g~~--~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~  283 (416)
T PRK15099        234 AYVMMRNLLAAHYSWD--EVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL  283 (416)
T ss_pred             HHHHHHHHHHhcCCHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999996 77864  5779999999977 45789999999999999985

>TIGR01695 mviN integral membrane protein MviN

Probab=99.89  E-value=2.1e-20  Score=179.90  Aligned_cols=232  Identities=16%  Similarity=0.113  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchh
Q 018774           47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY  126 (350)
Q Consensus        47 ~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~  126 (350)
                      +++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++.++....+..+++++..|.+++++|++|++
T Consensus       218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~  297 (502)
T TIGR01695       218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN  297 (502)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            45678999999999999999999999999998666899999999999999886434467899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchh
Q 018774          127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTM  201 (350)
Q Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  201 (350)
                      +.++.++++......++++.+++ +.++++++.++..    ++|..+.+..++++++++.++..+..++.+.+++.||++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~  377 (502)
T TIGR01695       298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR  377 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence            99999999999999999988766 6688999988765    456777889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHH
Q 018774          202 VIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVAS  281 (350)
Q Consensus       202 ~~~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  281 (350)
                      .+++.++...++|++++++++.  .+|+.|+++|+.+++.+..++..++.+|+....       ...+..+++.+..++.
T Consensus       378 ~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~as  448 (502)
T TIGR01695       378 TPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKGI-------LPFGVLKVLAKLVIAS  448 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------CchHHHHHHHHHHHHH
Confidence            9999999999999999999987  589999999999999999888877776551110       1123444556655555


Q ss_pred             HHHHHH
Q 018774          282 GVMLCL  287 (350)
Q Consensus       282 ~l~~~~  287 (350)
                      .++...
T Consensus       449 ~~m~~~  454 (502)
T TIGR01695       449 AIIGGV  454 (502)
T ss_pred             HHHHHH
Confidence            555443

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.85  E-value=4e-18  Score=161.02  Aligned_cols=205  Identities=14%  Similarity=0.131  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhh
Q 018774           48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM  127 (350)
Q Consensus        48 ~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~  127 (350)
                      .+..|++++...|.+++.....+...+|+.+.+.+++.++++++.+.++.++....+..++++...|..|+...+||.++
T Consensus       194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~  273 (451)
T PF03023_consen  194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE  273 (451)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            45799999999999999999999999999999999999999999999999976567888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhH
Q 018774          128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLG----QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMV  202 (350)
Q Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (350)
                      .++..++++...+.+.+|.++. +.+++++++++.    .+.|..+....+++++++++|+.++...+...+.+.||+|.
T Consensus       274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~  353 (451)
T PF03023_consen  274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT  353 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence            9999999999999999998766 669999998764    36666778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          203 IAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       203 ~~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      +++.++++.++|++++.++..  .+|..|.++|+.++.++..+..++.++|+
T Consensus       354 ~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  354 PVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRR  403 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988  79999999999999999999888888776

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.84  E-value=2.5e-18  Score=162.19  Aligned_cols=200  Identities=16%  Similarity=0.111  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhh
Q 018774           48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM  127 (350)
Q Consensus        48 ~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~  127 (350)
                      ++..|++++.+.|..++++.......+-+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++|+||+|+
T Consensus       228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~  306 (441)
T PRK10367        228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQ  306 (441)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHH
Confidence            35789999999999999999999999999999999999999999999999885 78999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc---chhHH
Q 018774          128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQL---KTMVI  203 (350)
Q Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~  203 (350)
                      +|+..+.+..++++.+++++++ +.+.+++..+|..|+|+.+.+..++++.++..+.........+.+++.+   |++.+
T Consensus       307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~  386 (441)
T PRK10367        307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS  386 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence            9999999999999999887765 5588899999999999999999999998876443324444444455555   59999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       204 ~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      ++.++++..+    .++...  .+|+.|+|++..+++.+..+...+.++++
T Consensus       387 ~~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~  431 (441)
T PRK10367        387 MAVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRRH  431 (441)
T ss_pred             HHHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887543    112223  57999999999999999988887766655

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.82  E-value=1.9e-16  Score=148.18  Aligned_cols=233  Identities=15%  Similarity=0.128  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhH
Q 018774           49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML  128 (350)
Q Consensus        49 ~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~  128 (350)
                      +..|++.+.-.|..++..+.++..++|+.+.+.+.+.+++.+.++..+.++..-++..++++...|..|++..++|.++.
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~  308 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF  308 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence            68999999999999999999999999999999999999999999999999665689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHH
Q 018774          129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLG----QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI  203 (350)
Q Consensus       129 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (350)
                      ++..++++.+++++++|.++. +.+++++++.+.    .+++......+.+..+.++.+++.+..++...+++++|+|.|
T Consensus       309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP  388 (518)
T COG0728         309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP  388 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence            999999999999999998776 669999998764    245556678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHH
Q 018774          204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGV  283 (350)
Q Consensus       204 ~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l  283 (350)
                      +++++++.++|+++++++..  .+|..|.++++.++.+++....++..+|+......     ..|.... ..|..+-.++
T Consensus       389 ~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~-----~~~~~~~-~~k~~l~~~i  460 (518)
T COG0728         389 MKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPG-----RGWGLFL-ILKLLLASAI  460 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----chhhHHH-HHHHHHHHHH
Confidence            99999999999999988777  68999999999999999888888877776322112     2233333 4555555555


Q ss_pred             HHHHHH
Q 018774          284 MLCLEN  289 (350)
Q Consensus       284 ~~~~~~  289 (350)
                      +....+
T Consensus       461 ~~~~~~  466 (518)
T COG0728         461 MAAALL  466 (518)
T ss_pred             HHHHHH
Confidence            544333

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.82  E-value=5.2e-18  Score=162.72  Aligned_cols=205  Identities=15%  Similarity=0.122  Sum_probs=173.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------hHHHHH----HHHHHHHHHHHHHHHHHHHHhHH
Q 018774           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGD------LELAAI----SIANTVVVAFNFGLLLGMASALE  113 (350)
Q Consensus        45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~------~~~a~~----~~a~~l~~~~~~~~~~g~~~a~~  113 (350)
                      +.+++.+|++++.+.|..++++...+.+.+|+.++++ +++      ++.+.+    +.+.++..+. ..+..+++++..
T Consensus       218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~  296 (488)
T TIGR02900       218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV  296 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence            3456789999999999999999999999999999987 322      222232    3445566654 567889999999


Q ss_pred             HHHHhHhcccchhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018774          114 TLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQR  192 (350)
Q Consensus       114 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (350)
                      |.+++++|+||+++.++..++...++..++++.+++ ..++++++.++..++    .+..++++++++.++..+.....+
T Consensus       297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~  372 (488)
T TIGR02900       297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQS  372 (488)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987665 568888888876543    356789999999999999999999


Q ss_pred             HHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          193 FLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       193 ~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      .+++.||+|..++.++++.++|++++++++....+|+.|+++++.+++.+..++..+..+|.
T Consensus       373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998732278999999999999999988887777654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.80  E-value=6.3e-20  Score=149.56  Aligned_cols=160  Identities=25%  Similarity=0.404  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHHHHHHHHHHH
Q 018774           60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL  139 (350)
Q Consensus        60 p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  139 (350)
                      |..+++++..+.+.+|+.+++++|++++++++++.++.+.. ..+..|+++|..+.+||++|++|++++++.+++++.++
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~   79 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence            89999999999999999999999999999999999999985 67999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH-HHHHHH
Q 018774          140 FICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLV  217 (350)
Q Consensus       140 ~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~l  217 (350)
                      .+++++..++ +.+.+++..+++.|+|+.+.+..|+++..++.++..+.....+++++.||++.+++.++++. ++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  159 (162)
T PF01554_consen   80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL  159 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence            9999988776 66899999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHH
Q 018774          218 TWL  220 (350)
Q Consensus       218 ~~~  220 (350)
                      +|+
T Consensus       160 ~yl  162 (162)
T PF01554_consen  160 AYL  162 (162)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            875

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK15099 O-antigen translocase; Provisional

Probab=99.78  E-value=1.6e-16  Score=149.27  Aligned_cols=202  Identities=7%  Similarity=-0.029  Sum_probs=174.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccc
Q 018774           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAG-HLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGK  123 (350)
Q Consensus        45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~-~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~  123 (350)
                      +.+++..|++++++.|..++++...+...+|+.+++ ++|++++|.|+.+.++.+.+...+..+++++.+|.++++   +
T Consensus       208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~  284 (416)
T PRK15099        208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T  284 (416)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            345778999999999999999999999999999998 589999999999999988544678899999999999995   6


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhH
Q 018774          124 KYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMV  202 (350)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (350)
                      |+++.++.+++.......++++.++. ++++++++.++.+++  .+.+.+++++++++.++......+...+.+.++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~  362 (416)
T PRK15099        285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF  362 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999998888877665 568999999887765  334677899999999888887777777778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 018774          203 IAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC  253 (350)
Q Consensus       203 ~~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~  253 (350)
                      .....+...++++++++++++  .+|..|+++++.+++.+..++..+...+
T Consensus       363 ~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~  411 (416)
T PRK15099        363 YILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL  411 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888999999999998  6899999999999999988877665543

>PRK10459 colanic acid exporter; Provisional

Probab=99.75  E-value=1.9e-15  Score=145.11  Aligned_cols=202  Identities=14%  Similarity=0.007  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch
Q 018774           47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY  125 (350)
Q Consensus        47 ~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~  125 (350)
                      +++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...++....|..++.  ++|.
T Consensus       202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~  279 (492)
T PRK10459        202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT  279 (492)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence            35678999999999999999999999999999999 79999999999999988644455666778888999886  5688


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH
Q 018774          126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA  204 (350)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (350)
                      ++.++.+++.......+++|++++ ...+++++.++.+++  ...+...+++++++..+..+.......+++.||+|..+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~  357 (492)
T PRK10459        280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF  357 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence            899999999999999999997766 558888888776654  34577899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       205 ~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      +.+++..+++++..+.+..  .+|+.|+++++.+++.+......++..|+
T Consensus       358 ~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~  405 (492)
T PRK10459        358 KWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP  405 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888887777766  68999999999999998888777766544

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.74  E-value=1.3e-14  Score=137.30  Aligned_cols=259  Identities=17%  Similarity=0.101  Sum_probs=210.4

Q ss_pred             cChh-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhcccchhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 018774           82 LGDL-ELAAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLK  158 (350)
Q Consensus        82 lg~~-~~a~~~~a~~l~~~~~~~~~-~g~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~  158 (350)
                      +|.. +..+|..+.++.+.+...+. .+++++..|..++.. ++++++.++..+....+..+.++.++++ +.++++++.
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5654 56689999999997643443 568999999999998 8889999999998888887777766555 668889888


Q ss_pred             hc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchHH
Q 018774          159 LL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG---LIGTA  233 (350)
Q Consensus       159 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G---~~G~a  233 (350)
                      .+  +.+++..+.+.+++++..+..++..+..++.+++|+++|...+....++.++..++..+++..  ..|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence            87  457788899999999999999999999999999999999999999988888775554443333  567   88999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q 018774          234 ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALS  313 (350)
Q Consensus       234 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~  313 (350)
                      +|..++..+..++.....+|...+.+.+.  ....+.+|++++...|..+..........+.+.+++.++++.  +++.+
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~--vs~l~  237 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKF--DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGS--VSALN  237 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccccC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHH
Confidence            99999999999888888776643322211  112346889999999999999999999999999999999775  55999


Q ss_pred             HHHHHHHHHH-HHhhHhhhhHhhhhhhhhhcccCC
Q 018774          314 ICMSINGWES-QICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       314 i~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      .+.++.++.. .+..++++..-+-.++...++|.+
T Consensus       238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~  272 (451)
T PF03023_consen  238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE  272 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            9999999876 557789988888888888877764

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.70  E-value=1.3e-14  Score=138.96  Aligned_cols=187  Identities=20%  Similarity=0.233  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch
Q 018774           47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY  125 (350)
Q Consensus        47 ~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~  125 (350)
                      .++..|+.++.+.|...+.+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+..+++....|.+++.+.++|.
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~  286 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR  286 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence            47899999999999999999999999999999999 7999999999888887774 788899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH
Q 018774          126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA  204 (350)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (350)
                      ++.++..++.......+++|..++ ..++++++..+.+++..  .+...+++++++.++..+.......+++.|+++..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            999999999999999999998776 55888898887666532  277789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHH
Q 018774          205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSF  238 (350)
Q Consensus       205 ~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i  238 (350)
                      +.+.++.++|++++++++.  .+|+.|++++++.
T Consensus       365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~~~  396 (480)
T COG2244         365 LISLISALLNLILNLLLIP--RFGLIGAAIATAS  396 (480)
T ss_pred             HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHHHH
Confidence            9999999999999999998  7899999999933

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.67  E-value=1.4e-12  Score=115.02  Aligned_cols=271  Identities=18%  Similarity=0.150  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHHHHH
Q 018774           55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ  133 (350)
Q Consensus        55 ~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~~~~  133 (350)
                      +|-+.-....++...+.+++-..++.| +|+++.|.++....+.+++......|++++....+++...+  +++.+....
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            466677788888888999999999999 79999999999999988765556888999988888876432  344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH
Q 018774          134 RSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLV  213 (350)
Q Consensus       134 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  213 (350)
                      .......+.++..........    .+..++ ...   .+........++.........++++.++.+.....++...+.
T Consensus        80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILLIAS----FFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL  151 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444333333322222    333332 221   122222222256778888999999999999999999999888


Q ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018774          214 HLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYR  293 (350)
Q Consensus       214 ~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~  293 (350)
                      ..+...+++.. ..++.+..++..++..+..++..++.+|+. +.+   ....+++..|++++.+.|..+..........
T Consensus       152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (273)
T PF01943_consen  152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ  226 (273)
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666653 445889999999999888888877777652 111   2223367889999999999999999999999


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhh
Q 018774          294 VLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLL  341 (350)
Q Consensus       294 ~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~  341 (350)
                      .+..+++.+... .+++.|+++.++......++.++.+...+..++++
T Consensus       227 ~d~~ii~~~~g~-~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~  273 (273)
T PF01943_consen  227 IDRLIIGYFLGP-EAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW  273 (273)
T ss_pred             hHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999998543 34779999999999999999999998888877653

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.66  E-value=1.5e-12  Score=122.28  Aligned_cols=293  Identities=11%  Similarity=-0.012  Sum_probs=225.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChh-HHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHhHhcccchhh
Q 018774           51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDL-ELAAISIANTVVVAFNFGL-LLGMASALETLCGQAFGGKKYYM  127 (350)
Q Consensus        51 ~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~-~~a~~~~a~~l~~~~~~~~-~~g~~~a~~~~~s~~~g~~~~~~  127 (350)
                      -++++|.+.-.....++..+.+++-..+++. +|+. ...++.++.++.+.+--.+ -.+++++..|...++..+++.++
T Consensus         6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~   85 (518)
T COG0728           6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA   85 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence            3455666666777777777788887777888 7885 5679999999999653332 34468999999999988887888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhc-CC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHH
Q 018774          128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLL-GQ--PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI  203 (350)
Q Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (350)
                      .++...........+.+..+++ .++.++++... ..  |++....+....+++.+..++..+.....+.+|+.+|...+
T Consensus        86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~  165 (518)
T COG0728          86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP  165 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence            8877777775555555555444 66777777444 33  23333358888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHH
Q 018774          204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGV  283 (350)
Q Consensus       204 ~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l  283 (350)
                      ...-+.-++.-+.....+.+..+.-..+.++++.++-+++.++.+..++|.....+++..  .+-+.+|++.+...|..+
T Consensus       166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~--~~~~~lk~~~~~~~p~~l  243 (518)
T COG0728         166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG--FKDPGLKRFLKLMLPALL  243 (518)
T ss_pred             hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCC--CCchhHHHHHHHHHHHHH
Confidence            999888887766555555554222367888899999999999999999888433222211  111578899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-HHhhHhhhhHhhhhhhhhhcccCC
Q 018774          284 MLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWES-QICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      .....++...+++.+++.+.++.  ++.++.+.+++++.. .+..++++..-+-.+++...+|.|
T Consensus       244 ~~sisQi~lli~~~iAS~l~~Gs--is~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~  306 (518)
T COG0728         244 GVSISQINLLIDTAIASFLAEGS--VSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP  306 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence            99999999999999999997765  459999999999877 778899998889999988888765

>PRK10459 colanic acid exporter; Provisional

Probab=99.56  E-value=9.4e-12  Score=119.64  Aligned_cols=266  Identities=6%  Similarity=0.006  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHH
Q 018774           52 KKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGV  130 (350)
Q Consensus        52 k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~  130 (350)
                      ++..+-+....++++...+.+++...+++| +|+++.|.++.+..+...+......|++++..    |.   +|.  .++
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SHL   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CHH
Confidence            556777778888999999999999999999 79999999999999988755555566666542    22   111  123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Q 018774          131 YMQRSWIVLFICCVLLLPLYV-FASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLA  209 (350)
Q Consensus       131 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (350)
                      .......+....++.+.++.+ +.+++...+ .+++.    ...+++..+..++..+.......++..++.+........
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~  150 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS  150 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence            344555666666665554433 445544444 44443    345777778888888888899999999999999888888


Q ss_pred             HHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHHHHHHHH
Q 018774          210 SLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLEN  289 (350)
Q Consensus       210 ~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~  289 (350)
                      ..+...++...+... ++|+.+.+++..++..+..+...+.. +++++.++    +.+++.+|++++.+.|.........
T Consensus       151 ~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~~  224 (492)
T PRK10459        151 AVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFG-RKIYRPAL----HFSLASVKPNLSFGAWQTAERIINY  224 (492)
T ss_pred             HHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCccc----eecHHHHHHHHhhhHHHHHHHHHHH
Confidence            887777666665543 78999999999999877765543332 22222211    1234578899999999999999999


Q ss_pred             HHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHHHHH-hhHhhhhHhhhhhh
Q 018774          290 WYYRVLILMTGNL-QNAKIAVDALSICMSINGWESQI-CYYSISGDLDCNWC  339 (350)
Q Consensus       290 ~~~~~~~~~~~~~-g~~~~~vaa~~i~~~~~~~~~~~-~~~~~~a~~~~~~~  339 (350)
                      ....++..+++++ |.+  +++.|+.+.++.+..... ...++...-+..++
T Consensus       225 ~~~~~d~~~lg~~lg~~--~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~  274 (492)
T PRK10459        225 LNTNIDTILIGRILGAE--VLGGYNLAYNVATVPPMKINPIITRVAFPVFAK  274 (492)
T ss_pred             HHhcCchhhhhHhhchH--hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999998887 543  467999999988764433 33344444444454

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.49  E-value=1.5e-12  Score=119.03  Aligned_cols=133  Identities=21%  Similarity=0.292  Sum_probs=121.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccc
Q 018774           44 TRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGK  123 (350)
Q Consensus        44 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~  123 (350)
                      ++.+++..|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.+.. ..+..+++++..|.+++++|++
T Consensus       208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~  286 (342)
T TIGR00797       208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG  286 (342)
T ss_pred             cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence            445677899999999999999999999999999999999999999999999998874 6889999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHH
Q 018774          124 KYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWL  177 (350)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (350)
                      |+++.++..+++....+.++++..++ +.+.+++.+++..|+++.+.+..++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999987766 5588999999999999999988888764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.47  E-value=3.9e-11  Score=114.99  Aligned_cols=281  Identities=13%  Similarity=0.059  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhH
Q 018774           50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML  128 (350)
Q Consensus        50 ~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~  128 (350)
                      ..+++.|-+.-...+++...+..++....++| +|+++.|.++.+..+...+......|+..+....+++..+++++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~   83 (480)
T COG2244           4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL   83 (480)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence            56778888888899999999999999999999 89999999999999999776666688999988888888766665555


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHH
Q 018774          129 GVY-MQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS  207 (350)
Q Consensus       129 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  207 (350)
                      +.. ...........+++......+..+.      ++    .....+++..++.+.........+.+|+.++.+......
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (480)
T COG2244          84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI  153 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            555 4444444444444433332222222      22    233456788899999999999999999999999999884


Q ss_pred             HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHHHHHH
Q 018774          208 LASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCL  287 (350)
Q Consensus       208 ~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~  287 (350)
                      +.. ..-+...+.+..   ....+..++...+......+...+..+++.+.....+ +..++.+++.++.++|..+....
T Consensus       154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~  228 (480)
T COG2244         154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLL  228 (480)
T ss_pred             HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHH
Confidence            443 111222222221   3444556666666666555555544322111111111 12467899999999999999999


Q ss_pred             HHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          288 ENWYYRVLILMTGNL-QNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       288 ~~~~~~~~~~~~~~~-g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      ......++..+++.+ |..  .++.|+.+.++......+..+++.+.-+..++.+.++|.|
T Consensus       229 ~~l~~~~D~~~i~~~l~~~--~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~  287 (480)
T COG2244         229 NFLFTNIDTLLLGLFLGPA--QVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK  287 (480)
T ss_pred             HHHHHHHHHHHHHHHhhhh--HheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            999999999999988 533  4668998899999999999999999999999988887765

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=99.45  E-value=1.4e-09  Score=94.71  Aligned_cols=244  Identities=15%  Similarity=0.127  Sum_probs=168.7

Q ss_pred             HHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 018774           71 MFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL  149 (350)
Q Consensus        71 ~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~  149 (350)
                      .+++-..+++| +|+++.|.++....+..+.......|+.+....     ..++|+++.++..........+.++...++
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888 899999999999999887544445566555433     233566667777776666555555443332


Q ss_pred             HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018774          150 YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGL  229 (350)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~  229 (350)
                      ..   .+...+ .+++.    ..++....+..+.........+.+++.+|.+..........+...++..++... +.++
T Consensus        78 ~~---~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (251)
T PF13440_consen   78 AI---LIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL  148 (251)
T ss_pred             HH---HHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence            11   111122 33322    234566777788889999999999999999999999999988775444444442 4488


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhhH
Q 018774          230 IGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGN-LQNAKIA  308 (350)
Q Consensus       230 ~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~-~g~~~~~  308 (350)
                      .+..++..++.++..++.+...+++ .+  ..+    ..+.. +..+.+.|..+..............+++. +|.+  +
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--~  218 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLLRRK-LR--LSF----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE--A  218 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cC--CCc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--H
Confidence            8888998888887776655533222 11  111    12222 47899999999999999999999999999 6644  4


Q ss_pred             HHHHHHHHHHHHHHH-HHhhHhhhhHhhhhh
Q 018774          309 VDALSICMSINGWES-QICYYSISGDLDCNW  338 (350)
Q Consensus       309 vaa~~i~~~~~~~~~-~~~~~~~~a~~~~~~  338 (350)
                      ++.|+++.++..... .+..++++...+-.+
T Consensus       219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~la  249 (251)
T PF13440_consen  219 VGIYSVAQRLASLPASLLSSAISSVFFPKLA  249 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            669999999999888 888888877665444

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.14  E-value=1.1e-10  Score=110.12  Aligned_cols=206  Identities=16%  Similarity=0.086  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch
Q 018774           48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGD--LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY  125 (350)
Q Consensus        48 ~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~--~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~  125 (350)
                      .+.+++++++++|..+...++.-...+-....|.++.  .++++.++........ ..+..+++.+..+.+++..|++|.
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p  321 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP  321 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence            8899999999999999999999999999999999874  6888999998888864 677889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH
Q 018774          126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA  204 (350)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (350)
                      +++|.....+...++..++..+.. +...+.+...|..|+|+.+...+..++++...++...+.++.+..++.|..+...
T Consensus       322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga  401 (473)
T KOG1347|consen  322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA  401 (473)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence            999999999999998888876555 6677888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          205 WVSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       205 ~~~~~~~-~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      +.++... ++.+++...+-+..++|..|.|++...+..+..........+.
T Consensus       402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~t  452 (473)
T KOG1347|consen  402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTART  452 (473)
T ss_pred             EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeec
Confidence            9998887 7777777777766789999999999999666666655554433

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=99.03  E-value=1.6e-06  Score=75.49  Aligned_cols=249  Identities=14%  Similarity=0.080  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh---hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch
Q 018774           49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGD---LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY  125 (350)
Q Consensus        49 ~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~---~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~  125 (350)
                      ..++.++++-+|+.++.+...+...+-+.-+++-.+   +.+|+|+++..+.-.+ ..+...+-+....     ++.+++
T Consensus         8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~r   81 (345)
T PF07260_consen    8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSKR   81 (345)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcchh
Confidence            468899999999999999999999988888887433   3589999999987664 4666666555443     333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhH
Q 018774          126 YMLGVYMQRSWIVLFICCVLLLPL-YV-FASPVL-KLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMV  202 (350)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (350)
                      + -++.+......+.+......++ +- .+..++ ..++.++++.+.++..+.++.+--++.++...+.+++--.+++..
T Consensus        82 s-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i  160 (345)
T PF07260_consen   82 S-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI  160 (345)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence            3 2333333333333333332333 33 444444 567889999999999999999999999999999999987788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcc-chHH---HHHHHHHHHHHHHHHHHHHhc--CCCcccCCCChHhHHhHHHHHH
Q 018774          203 IAWVSLASLLVHLLVTWLFVYKMQLGL-IGTA---ITLSFSWWVLIFGMFGYVACG--GCPRTWTGFSMEAFSDLWEFVK  276 (350)
Q Consensus       203 ~~~~~~~~~~~~i~l~~~li~~~~~G~-~G~a---~a~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  276 (350)
                      ....++...+..+++..+++.. ++.. ....   ++...+..+........+++.  +.+....+..+.+...++++++
T Consensus       161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~  239 (345)
T PF07260_consen  161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK  239 (345)
T ss_pred             eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence            8777777766666655555532 1111 1111   222233322222222222222  3333333333445567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Q 018774          277 LSVASGVMLCLENWYYRVLILMTGN-LQNA  305 (350)
Q Consensus       277 ~~~p~~l~~~~~~~~~~~~~~~~~~-~g~~  305 (350)
                      ..+|.+........+--+.+.++++ +|.+
T Consensus       240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs  269 (345)
T PF07260_consen  240 FWWPLALVLATQRISRPLVNLFVSRDLSGS  269 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence            9999999999999999999999999 5543

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.89  E-value=3e-07  Score=73.17  Aligned_cols=79  Identities=22%  Similarity=0.244  Sum_probs=74.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 018774          174 SLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC  253 (350)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~  253 (350)
                      +++++++.++..+.....+.+++.||++..++.++++.++|+++++++++  ++|..|+++|+.+++.+......+..+|
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999988  7999999999999999998888887776


Q ss_pred             c
Q 018774          254 G  254 (350)
Q Consensus       254 ~  254 (350)
                      +
T Consensus        80 ~   80 (146)
T PF14667_consen   80 K   80 (146)
T ss_pred             H
Confidence            6

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.72  E-value=4e-06  Score=80.67  Aligned_cols=203  Identities=8%  Similarity=0.008  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccch--
Q 018774           51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH--L-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY--  125 (350)
Q Consensus        51 ~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~--l-g~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~--  125 (350)
                      -++.++++.....+++.-.+.+--|++++..  + ..++.|.|++++++-+++.=.+...+--..-...++....++.  
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~  331 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK  331 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence            4678888999999999999999999999999  5 7789999999999999877778888888888888887655432  


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Q 018774          126 -------YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQ  197 (350)
Q Consensus       126 -------~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  197 (350)
                             ++..+.....+.+...++++... +-..++.++.+++++......+...+++++..+|+.+++.+..++.++.
T Consensus       332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~  411 (549)
T PF04506_consen  332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV  411 (549)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence                   34555666666666666665433 3556777777776554444456778999999999999999999999999


Q ss_pred             cchhHHHHHHH---HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          198 LKTMVIAWVSL---ASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       198 g~~~~~~~~~~---~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      ...+.....+-   +..++.+..++++... ++|..|..+|.++...+..+....++++.
T Consensus       412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~  470 (549)
T PF04506_consen  412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY  470 (549)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776654444   4446667788888875 69999999999999999998888887665

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=0.00063  Score=62.29  Aligned_cols=199  Identities=10%  Similarity=0.051  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccchhhHHH
Q 018774           54 LWHIVGPTIFSRMASYSMFVITQAFAGH---LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGV  130 (350)
Q Consensus        54 ~~~~~~p~~~~~~~~~~~~~vd~~~i~~---lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~  130 (350)
                      ..+...-...+.+.-.+.+-=|.+++..   +.-.+.|.|..++++-+++.-.+...+--......+|....++.|+.++
T Consensus       241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~  320 (530)
T KOG2864|consen  241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK  320 (530)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence            3444444555666666677777777774   3555778888888887766677778888888888888887777776666


Q ss_pred             HHHHH---HHHHHHHHHHHHH-HHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH--
Q 018774          131 YMQRS---WIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA--  204 (350)
Q Consensus       131 ~~~~~---~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~--  204 (350)
                      .....   +.+...+|+..++ +...+...+.+.+++.-....+...++++|..+|+.+++.+..+++.+.+..+...  
T Consensus       321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~  400 (530)
T KOG2864|consen  321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH  400 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence            55544   4444444433322 24456666677666554444556789999999999999999999999988776655  


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          205 -WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       205 -~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                       +..++..++.++++|+++-  .+|..|..+|.++...+..+....++++.
T Consensus       401 n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~~  449 (530)
T KOG2864|consen  401 NKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRHY  449 (530)
T ss_pred             ccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4455566778899999998  57889999999998887777766665544

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.72  E-value=0.0003  Score=61.65  Aligned_cols=72  Identities=19%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 018774           47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQA  119 (350)
Q Consensus        47 ~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~  119 (350)
                      +++..|++++.+.|..++++...+....|+.++++ .|++++|.|+.+.++.... ..+...+.+...|.+++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRL  272 (273)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999999999999 6999999999999999985 678889999999999875

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=97.50  E-value=0.00011  Score=59.35  Aligned_cols=67  Identities=13%  Similarity=-0.030  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCCC
Q 018774          280 ASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDIDF  348 (350)
Q Consensus       280 p~~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  348 (350)
                      |.+++...+...+.+.+.+++++|+.+  ++++++..++..+..++..|+++|.++++++.++.+|.|.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~--~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~   67 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEA--LAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKR   67 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCC--CCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHhhhcccccccccceeecccccccccc
Confidence            889999999999999999999998755  5599999999999999999999999999999999888764

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.81  E-value=0.012  Score=50.88  Aligned_cols=66  Identities=18%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 018774           53 KLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQ  118 (350)
Q Consensus        53 ~~~~~~~p~~~~~~~~~~~~~vd~~~i~~-lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~  118 (350)
                      +.++.+.|...+++.....+.+|.++++. +|++++|.|+.+.++.......+..++++...|.++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar  250 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR  250 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            37999999999999999999999999999 8999999999999999865337899999999998886

>COG4267 Predicted membrane protein [Function unknown]

Probab=94.59  E-value=3.5  Score=37.60  Aligned_cols=141  Identities=13%  Similarity=0.162  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCHHHHHHHHHHHHHHH
Q 018774           99 AFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLL  178 (350)
Q Consensus        99 ~~~~~~~~g~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (350)
                      .+..++..|+....+..+|...=++|++++...+.-...+....+..+...       +-....+...     .|=...+
T Consensus        71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si-----~yk~l~~  138 (467)
T COG4267          71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSI-----VYKILAC  138 (467)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhH-----HHHHHHH
Confidence            334566777777778888887777777777766655554444443332211       1111222211     1223334


Q ss_pred             hHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          179 PVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      .....+...-....++.+.+|.+...+.-.++.++.+.+..++-.   +++.|.-++..++..+.......+..|.
T Consensus       139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~  211 (467)
T COG4267         139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            445555666677888999999999999999999998888887764   6999999999999988777776666655

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=92.22  E-value=12  Score=36.56  Aligned_cols=74  Identities=8%  Similarity=-0.114  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHHHH-HHhhHhhhhHhhhhhhhhhccc
Q 018774          271 LWEFVKLSVASGVMLCLENWYYRVLILMTGN--LQNAKIAVDALSICMSINGWES-QICYYSISGDLDCNWCLLLYTD  345 (350)
Q Consensus       271 ~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~--~g~~~~~vaa~~i~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~  345 (350)
                      -++.++.......+.....+..+-...++..  +.+.+ +-+.|.+++|+.+++. .+..-+=.+.-...++....++
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~  328 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDN  328 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccC
Confidence            4678888888888888899888888888887  54422 3458999999988876 3345566666666666665543

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	3e-44
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	5e-06

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  157 bits (398), Expect = 3e-44
 Identities = 45/284 (15%), Positives = 112/284 (39%), Gaps = 10/284 (3%)

Query: 42  TLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFN 101
               R+  E+  L  +  P + + +A   M  +    AG +  +++AA+SIA ++ +   
Sbjct: 2   NSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS- 60

Query: 102 FGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLG 161
               +G+  AL  +  Q  G  + + +   + +  I+  +  V ++ +      +++ + 
Sbjct: 61  ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMD 120

Query: 162 QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLF 221
             + +A  +      ++    ++     L+ F      T     +    LL+++ + W+F
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF 180

Query: 222 VYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR---TWTGFSMEAFSDLWEF 274
           VY      +LG +G  +  +  +W+++  +  Y+           +  F      +L   
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRL 240

Query: 275 VKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSI 318
            +L       L  E   + V+ L+   L +  +A  A  + ++ 
Sbjct: 241 FRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNF 282

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 15/208 (7%)

Query: 48  WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLG 107
             E  +L+ +  P   +     ++F +       LG   +AA  +A     +  F   + 
Sbjct: 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFS-SLVFMFPMS 292

Query: 108 MASALETLCGQAFGGKKYYMLGVYMQRS-WIVLFICCVLLLPLYVFASPVLKLLGQPDDV 166
           + +A+    G   G +      +         L   C+  L   +F   +  L  +   V
Sbjct: 293 IGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVV 352

Query: 167 AELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLVTWLF---- 221
             L+  + L+        A Q      L+       I   +  S  ++ L   ++     
Sbjct: 353 VALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTN 412

Query: 222 -VYKMQLGLIGTAITLSFSWWVLIFGMF 248
            + +  LG  G        W   I G+ 
Sbjct: 413 WLTEQPLGAKGF-------WLGFIIGLS 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	100.0
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.9

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=100.00  E-value=2e-33  Score=265.67  Aligned_cols=300  Identities=16%  Similarity=0.248  Sum_probs=271.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 018774           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK  124 (350)
Q Consensus        45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~  124 (350)
                      +..++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++.... ..+..+++.+..+.+++++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            45678999999999999999999999999999999999999999999999997764 67789999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH
Q 018774          125 YYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA  204 (350)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (350)
                      +++.++.+++++.+..+++++.++++.+.++++.+++.+++..+.+..|+++++++.++..+...+.+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877777788999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--c-cCCCChHhHHhHHHHHHH
Q 018774          205 WVSLASLLVHLLVTWLFVYK-M---QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR--T-WTGFSMEAFSDLWEFVKL  277 (350)
Q Consensus       205 ~~~~~~~~~~i~l~~~li~~-~---~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~  277 (350)
                      ..++++.++|+++++++++. +   ++|+.|+++|+.+++++..++..+++++++...  + ++++.+.+++.+|++++.
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   699999999999999999988888777663221  1 223334566788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774          278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID  347 (350)
Q Consensus       278 ~~p~~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  347 (350)
                      ++|..++...+.+.+.+.+.+++++|+.  ++|+|+++.++.++..+++.+++++.++.+++.++.+|.|
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~  311 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTK  311 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            9999999999999999999999999865  4669999999999999999999999999999999988876

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.90  E-value=1.3e-22  Score=191.45  Aligned_cols=209  Identities=14%  Similarity=0.098  Sum_probs=191.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 018774           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK  124 (350)
Q Consensus        45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~  124 (350)
                      +.+++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|
T Consensus       231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~  309 (460)
T 3mkt_A          231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD  309 (460)
T ss_dssp             SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34566889999999999999999999999999999999999999999999999985 68899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHH
Q 018774          125 YYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI  203 (350)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (350)
                      +++.++..+++..+...++++.+++ +.+.+++..++..|++..+.+..++++++++.++.+++.+..+.+++.||++.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  389 (460)
T 3mkt_A          310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI  389 (460)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            9999999999999999999987766 668899999998888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhh----cC-CccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774          204 AWVSLASL-LVHLLVTWLFVYK----MQ-LGLIGTAITLSFSWWVLIFGMFGYVACG  254 (350)
Q Consensus       204 ~~~~~~~~-~~~i~l~~~li~~----~~-~G~~G~a~a~~i~~~~~~~~~~~~~~~~  254 (350)
                      ++.++++. ++++++++++.+.    .+ +|+.|+|+|+.+++.+..++..+.++|+
T Consensus       390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998 9999999999985    45 9999999999999998887766555443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00