Citrus Sinensis ID: 018777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MKVKEKMAVASISKTLTKLGGGSSFLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR
Secondary Structure (PSIPRED)
ccccccHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEcccEEEEccccccccccccccEEEEccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEEEcccccccccccccccccEEEEccHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccEEEEEEEEEccccEEEEEcccccccccccccEEEEEccccccccccccccEEEEEcccccHHcccHHHccccccccccccccccccccccccEEEccccccccccccccccEEEEEEEEEcccccccccccccccccEEEEccHHHHHHHcccccccEEEEccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MKVKEKMAVASISKTLtklgggssfllnhrapprlyssSAAAalssapqlssssqdqenvrkgsapsstwSKWLLFlpgaisfglgtwQIFRRQDKIKMLEYRQNrlqmdplrlnitspltedLKSLEFRRVICQgvfdeqrsiyvgprsrsisgvtengyyvitplmpipnnpqsvkspvlvnrgwvprswrdkssevsrdseqplnlapsvqqsqQSSWWWFwlkkpniveddvpsiaSVEVVGVvrgsekpsifvpandpsscqwfyvdvpaiacacglpentvyiedtnenvnpsnpyplpkdvstllrssvmpqdhlnyTLTWYSLSAAVTFMAfkrlrpkksrr
Flexible Loop (DISEMBL)
MKVKEKMAVASISktltklgggsSFLLNHRAPPRLYSSSAAAALSSApqlssssqdqeNVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQnrlqmdplrlniTSPLTEDLKSLEFRRVICQgvfdeqrsiyvgprsrsisgvtENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKssevsrdseqplnlapsvqqsqQSSWWWFWLKKPniveddvpsIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMafkrlrpkksrr
Low Complexity Region (SEG)
MKVKEKMAVASISKTLTKLGGGSSFLLNHRAPPRLYsssaaaalssapqlssssqDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPsvqqsqqsswwwfwLKKPNIVEDDVPSIAsvevvgvvrgseKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR
Disordered region (IsUnstruct)
********************************************************************TWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIP********PVLVNRGWVP******************************SWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDT******************LLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKR********
Disordered Region (DISOPRED)
*********************************************************************WSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSW********************VQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKK***
Disordered Region (DISEMBL)
*********ASISKTLTKLGGGSSFLLNHRAPPRLYSSS****************************STWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRS***************************SSWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKR********
Disordered Region (DISPRO)
MKVKEKMAVASISKTLTKLGGGSSFLLNHRA**********************************PSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWR**************************SWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPK****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVKEKMAVASISKTLTKLGGGSSFLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9SE51	354	Surfeit locus protein 1 O	yes	no	0.828	0.819	0.630	1e-109
Q9LP74	384	Surfeit locus protein 1-l	no	no	0.82	0.747	0.434	3e-62
P09925	306	Surfeit locus protein 1 O	yes	no	0.8	0.915	0.264	4e-25
Q15526	300	Surfeit locus protein 1 O	yes	no	0.691	0.806	0.283	7e-25
Q9QXU2	306	Surfeit locus protein 1 O	yes	no	0.622	0.712	0.291	1e-24
A4IHH4	307	Surfeit locus protein 1 O	yes	no	0.814	0.928	0.271	2e-23
Q800L1	309	Surfeit locus protein 1 O	yes	no	0.651	0.737	0.292	5e-23
O57593	240	Surfeit locus protein 1 (	N/A	no	0.637	0.929	0.283	4e-22
A9UWF0	261	SURF1-like protein OS=Mon	N/A	no	0.642	0.862	0.294	4e-21
Q556J9	270	SURF1-like protein OS=Dic	yes	no	0.697	0.903	0.309	6e-21

>sp|Q9SE51|SURF1_ARATH Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/298 (63%), Positives = 238/298 (79%), Gaps = 8/298 (2%)

Query: 55  QDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL 114
             QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++L
Sbjct: 63  PPQENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKL 117

Query: 115 NITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNP 174
           NI  PL ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISG+TENG++VITPLMPIP + 
Sbjct: 118 NIDHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDL 177

Query: 175 QSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQ--QSQQSSWWWFWLKKPNIV 232
            S++SP+LVNRGWVPRSWR+KS E S ++E   N +   +   ++  SWW FW K P I 
Sbjct: 178 DSMQSPILVNRGWVPRSWREKSQE-SAEAEFIANQSTKAKSPSNEPKSWWKFWSKTPVIT 236

Query: 233 EDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDT 292
           ++ + ++  VEVVGV+RG E PSIFVP+NDPS+ QWFYVDVPA+A A GLPENT+Y+ED 
Sbjct: 237 KEHISAVKPVEVVGVIRGGENPSIFVPSNDPSTGQWFYVDVPAMARAVGLPENTIYVEDV 296

Query: 293 NENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
           +E+V+ S PYP+PKD++TL+RS VMPQDHLNY++TWYSLSAAVTFMA+KRL+ K  RR
Sbjct: 297 HEHVDRSRPYPVPKDINTLIRSKVMPQDHLNYSITWYSLSAAVTFMAYKRLKAKPVRR 354

Probably involved in the biogenesis of the COX complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP74|SURFL_ARATH Surfeit locus protein 1-like OS=Arabidopsis thaliana GN=At1g48510 PE=2 SV=2

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/313 (43%), Positives = 189/313 (60%), Gaps = 26/313 (8%)

Query: 34  RLYSSSAAAALSSAPQLSSSSQ--DQENVRKGSAP----SSTWSKWLLFLPGAISFGLGT 87
           RL S S   + S+   L ++SQ  + E+    SAP        S  L +L G  ++GLG 
Sbjct: 11  RLISQSQYMSSSTTSNLPAASQTSNLESQLLSSAPPPAKKKRGSALLWYLVGFTTYGLGE 70

Query: 88  WQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVG 147
              F  Q +++ L+ R+  L+M P++LN T    +DL  L FRRV+C+G+FDEQRSIYVG
Sbjct: 71  TYKFL-QTQVEHLDSRKQCLEMKPMKLNTT----KDLDGLGFRRVVCKGIFDEQRSIYVG 125

Query: 148 PRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPL 207
           P+ RS+S  +E G+YVITPL+PIPN P S+KSP+LVNRGWVP  W++ S E    S    
Sbjct: 126 PKPRSMSKSSEIGFYVITPLLPIPNEPNSMKSPILVNRGWVPSDWKENSLE----SLGTG 181

Query: 208 NLAPSVQQSQQSS-----------WWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSI 256
            L  + ++S++++            +W+ L  P IVED V     VEVVGVVR SE P I
Sbjct: 182 GLVAAAKESRKANKLLSSQQSLLSKFWYKLNNPMIVEDQVSRAMHVEVVGVVRKSETPGI 241

Query: 257 FVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSV 316
           +   N PSS  WFY+DVP +A A G  E+T+YIE T  +++ S  YP+P+DV  L RS  
Sbjct: 242 YTLVNYPSSLAWFYLDVPKLALAMGFGEDTMYIESTYTDMDESRTYPVPRDVENLTRSKD 301

Query: 317 MPQDHLNYTLTWY 329
           +P D+  YT+ W+
Sbjct: 302 IPLDYHLYTVLWH 314

May be involved in the biogenesis of the COX complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P09925|SURF1_MOUSE Surfeit locus protein 1 OS=Mus musculus GN=Surf1 PE=2 SV=3

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 72/352 (20%)

Query: 7   MAVASISKTLTK-----LGGGSSFLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVR 61
           MA+A + + +T+       G + F    R+   ++  S  + +   P+   SS  +    
Sbjct: 5   MALAVLPRRMTRWSQWAYAGRAQFCAVRRS---VFGFSVRSGMVCRPRRCCSSTAETA-- 59

Query: 62  KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLT 121
              A   ++ +W L L  A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+ 
Sbjct: 60  AAKAEDDSFLQWFLLLIPATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM- 117

Query: 122 EDLKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIP 171
            +LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G +V+TP     
Sbjct: 118 -ELKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAHVVTPF---- 172

Query: 172 NNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNI 231
            +   +   +LVNRG+VPR                  + P  +Q  Q             
Sbjct: 173 -HCSDLGVTILVNRGFVPRK----------------KVNPETRQKGQ------------- 202

Query: 232 VEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIED 291
                  +  V++VG+VR +E    FVP N P    W+Y D+ A+A   G   + ++I+ 
Sbjct: 203 ------VLGEVDLVGIVRLTENRKPFVPENSPERNHWYYRDLEAMAKITG--ADPIFIDA 254

Query: 292 TNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRL 343
              +  P    P+       LR+     +H+ Y LTWY L AA +++ F++ 
Sbjct: 255 DFHSTAPGG--PIGGQTRVTLRN-----EHMQYILTWYGLCAATSYLWFQKF 299

Probably involved in the biogenesis of the COX complex.

Mus musculus (taxid: 10090)

>sp|Q15526|SURF1_HUMAN Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 PE=1 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 145/307 (47%), Gaps = 65/307 (21%)

Query: 48  PQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRL 107
           P    SS  + +  K  A   ++ +W+L L    +FGLGTWQ+ RR+ K+ ++   ++R+
Sbjct: 41  PSRCGSSAAEASATK--AEDDSFLQWVLLLIPVTAFGLGTWQVQRRKWKLNLIAELESRV 98

Query: 108 QMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRS-----------ISGV 156
             +P+ L    P+  +LK+LE+R V  +G FD  + +Y+ PR+             IS  
Sbjct: 99  LAEPVPLP-ADPM--ELKNLEYRPVKVRGCFDHSKELYMMPRTMVDPVREAREGGLISSS 155

Query: 157 TENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQS 216
           T++G YV+TP      +   +   +LVNRG+VPR                  + P  +Q 
Sbjct: 156 TQSGAYVVTPF-----HCTDLGVTILVNRGFVPRK----------------KVNPETRQK 194

Query: 217 QQSSWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAI 276
            Q             +E +      V+++G+VR +E    FVP N+P    W Y D+ A+
Sbjct: 195 GQ-------------IEGE------VDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAM 235

Query: 277 ACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVT 336
           A   G     ++I+   ++  P    P+       LR+     +HL Y +TWY LSAA +
Sbjct: 236 ARITG--AEPIFIDANFQSTVPGG--PIGGQTRVTLRN-----EHLQYIVTWYGLSAATS 286

Query: 337 FMAFKRL 343
           ++ FK+ 
Sbjct: 287 YLWFKKF 293

Probably involved in the biogenesis of the COX complex.

Homo sapiens (taxid: 9606)

>sp|Q9QXU2|SURF1_RAT Surfeit locus protein 1 OS=Rattus norvegicus GN=Surf1 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 63/281 (22%)

Query: 73  WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRV 132
           +LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +LK+LE+R V
Sbjct: 72  FLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--ELKNLEYRPV 127

Query: 133 ICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNNPQSVKSPVL 182
             +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +   +   +L
Sbjct: 128 KVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----HCSDLGVTIL 182

Query: 183 VNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIASV 242
           VNRG+VPR                  + P  +Q  Q                    +  V
Sbjct: 183 VNRGFVPRK----------------KVNPETRQQGQ-------------------VLGEV 207

Query: 243 EVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPY 302
           ++VG+VR +E    FVP N+P    W+Y D+ A+A   G   + ++I+    +  P    
Sbjct: 208 DLVGIVRLTENRKPFVPENNPERSLWYYRDLDAMAKRTG--TDPIFIDADFNSTTPGG-- 263

Query: 303 PLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRL 343
           P+       LR+     +H+ Y +TWY L AA +++ F++ 
Sbjct: 264 PIGGQTRVTLRN-----EHMQYIITWYGLCAATSYLWFRKF 299

Probably involved in the biogenesis of the COX complex.

Rattus norvegicus (taxid: 10116)

>sp|A4IHH4|SURF1_XENTR Surfeit locus protein 1 OS=Xenopus tropicalis GN=surf1 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 150/353 (42%), Gaps = 68/353 (19%)

Query: 7   MAVASISKTLTKLGGGSSFL-----LNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVR 61
           MA+  ++K L   G  +  L     L+H A P   + S  A L    +  ++        
Sbjct: 1   MALPGVTKLLLLPGVRAQLLNTPVRLSHWATPGRCTKSCHAYLQKNLRFCTTRSFSSVSP 60

Query: 62  KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLT 121
              +   T  KWLL L    +F LGTWQ+ RR  K+K+++  + R+   P+ L  T P+ 
Sbjct: 61  AAESSEDTVLKWLLLLIPVATFSLGTWQVQRRSWKLKLIQEMEARVSGKPIPLT-TDPM- 118

Query: 122 EDLKSLEFRRVICQGVFDEQRSIYVGPRS-----------RSISGVTENGYYVITPLMPI 170
            ++K LE+R V  +G FD  + +Y+ PR+             ++  T++G  VITP    
Sbjct: 119 -EIKELEYRPVKVRGHFDHSKELYILPRTLVDPEREAREAGQLASNTQSGAQVITPFY-- 175

Query: 171 PNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPN 230
                 +   +LVNRG+VP+                  + P  +   Q S          
Sbjct: 176 ---CSDLGITILVNRGFVPKK----------------KVNPETRPKGQVS---------- 206

Query: 231 IVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIE 290
                      VE+VG+VR +E    FVP NDPS   W Y D+ A+A   G     + I+
Sbjct: 207 ---------GEVELVGIVRLNETRKPFVPHNDPSRNLWHYKDLSAMAQVVG--AEPILID 255

Query: 291 DTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRL 343
               +  P    P+       LR+     +H+ Y +TWY L AA T++  K+ 
Sbjct: 256 ADRGSTVPGG--PIGGQTRVTLRN-----EHMQYIVTWYGLCAATTYLWCKKF 301

Probably involved in the biogenesis of the COX complex.

Xenopus tropicalis (taxid: 8364)

>sp|Q800L1|SURF1_CHICK Surfeit locus protein 1 OS=Gallus gallus GN=SURF1 PE=3 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 131/291 (45%), Gaps = 63/291 (21%)

Query: 64  SAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
           +A    W KW L L    +F LGTWQI RR+ K+ ++    +RL  +P+ L +  P+  +
Sbjct: 65  AAGEDAWLKWGLLLVPLTAFCLGTWQIQRRKWKLDLIAQLASRLSSEPIPLTL-DPM--E 121

Query: 124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGVT---ENGYYVITPLMPIPN 172
           LK LE+R V  +G FD  + +Y+ PRS        R    +T   ENG  VITP      
Sbjct: 122 LKELEYRPVKVRGHFDHSKELYILPRSLVDPEREAREAGKLTSHAENGANVITPFYCT-- 179

Query: 173 NPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIV 232
               +   +LVNRG+VP+                  L P  +   Q             +
Sbjct: 180 ---ELGVTILVNRGFVPKK----------------KLKPETRLKGQ-------------I 207

Query: 233 EDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDT 292
           E++      +++ GVVR SEK   FVP N+    +W Y D+ A+A   G     ++I+  
Sbjct: 208 EEE------IDLTGVVRLSEKRKPFVPENNIEKNRWHYRDLEAMAKVTG--AEPIFIDAD 259

Query: 293 NENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRL 343
             +  P  P      VS       +  +H+ Y +TWY L AA +F+ +++ 
Sbjct: 260 FRSTVPGGPIGGQTRVS-------LRNEHMQYIVTWYGLCAATSFLWYRKF 303

Probably involved in the biogenesis of the COX complex.

Gallus gallus (taxid: 9031)

>sp|O57593|SURF1_TAKRU Surfeit locus protein 1 (Fragment) OS=Takifugu rubripes GN=surf1 PE=3 SV=1

 Score =  105 bits (263), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 122/286 (42%), Gaps = 63/286 (22%)

Query: 72  KWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRR 131
           KW L L  A +FGLGTWQ+ RRQ K+++++        +P+ L I      +L SLE+RR
Sbjct: 4   KWFLLLIPATTFGLGTWQVKRRQWKMELIDGLTKLTTAEPIPLPIDPA---ELSSLEYRR 60

Query: 132 VICQGVFDEQRSIYVGPRS-----------RSISGVTENGYYVITPLMPIPNNPQSVKSP 180
           V  +G +D  + +Y+ PRS             +S   E G  VITP      +   +   
Sbjct: 61  VKMRGKYDHSKELYILPRSPVDPEKEAREAGRLSSSGETGANVITPF-----HVTDLGIT 115

Query: 181 VLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIA 240
           +LVNRG+VP+                  + P  +   Q                      
Sbjct: 116 ILVNRGYVPKK----------------KIRPETRMKGQVE-------------------G 140

Query: 241 SVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSN 300
            +EVVGVVR +E    FVP ND     W Y D+ A+    G     ++++    +  P  
Sbjct: 141 EMEVVGVVRLTETRKPFVPNNDVERNHWHYRDLEAMCQVTG--AEPIFVDADFSSTVPGG 198

Query: 301 PYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPK 346
             P+       LR+     +H+ Y +TWY L AA ++M F +   K
Sbjct: 199 --PIGGQTRVTLRN-----EHMQYIVTWYGLCAATSYMWFAKFIKK 237

Probably involved in the biogenesis of the COX complex.

Takifugu rubripes (taxid: 31033)

>sp|A9UWF0|SURF1_MONBE SURF1-like protein OS=Monosiga brevicollis GN=18583 PE=3 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 128/285 (44%), Gaps = 60/285 (21%)

Query: 73  WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRV 132
           W L     ++FGLGTWQIFR+Q K +++   + +L  +P  L  T+P   DL  +E+ RV
Sbjct: 19  WALLSVPVVTFGLGTWQIFRKQQKEELIATLEAKLSKEPAALP-TNP--ADLAHMEYERV 75

Query: 133 ICQGVFDEQRSIYVGPRS------RSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRG 186
              G F   + + VGPR+        ++ + E G  VITP              +LVNRG
Sbjct: 76  AVTGTFLHDQEMLVGPRTVTREVFSGMADLPEAGVQVITPF-----RLADTGEVILVNRG 130

Query: 187 WVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVG 246
           +VP            +++ P    P  + + Q                      +V + G
Sbjct: 131 FVP------------EAQAP----PHKRAAGQVE-------------------GTVRLEG 155

Query: 247 VVRGSEKPSIFVPANDPSSCQWFYVDVPAIAC-ACGLPENTVYIEDTNENVNPSNPYPLP 305
           +VR  E  + FVP N P    W+++DV  +A     LP   V I+ T E   P   +PL 
Sbjct: 156 IVRHGESQTAFVPDNHPEQNTWYWIDVFTMASNRSALP---VLIDATAE-CTPPGGFPLG 211

Query: 306 KDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
              +  +R+     +HL+Y +TWYS+S A+T   +  LR K   R
Sbjct: 212 GQTNITVRN-----EHLSYIITWYSIS-AITLAMWVFLRRKGGNR 250

Probably involved in the biogenesis of the COX complex.

Monosiga brevicollis (taxid: 81824)

>sp|Q556J9|SURF1_DICDI SURF1-like protein OS=Dictyostelium discoideum GN=surf1-1 PE=3 SV=2

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 40/284 (14%)

Query: 74  LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL------NITSPLTEDLKSL 127
           L F+   I+FGLGTWQ++R   K ++++  ++R++ DP+ L      N       DL   
Sbjct: 10  LFFIFPVIAFGLGTWQVYRYDWKKRLIQRAKDRMEEDPIELSNSFIKNFKGSSFGDLNKY 69

Query: 128 EFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGW 187
           EFRRV   G   + + + +GP  RSI G    GYYVI+PL        S  + +L+NRGW
Sbjct: 70  EFRRVYLNGKVIDNQYVLLGP--RSIDGTL--GYYVISPLQ------LSDGTRILLNRGW 119

Query: 188 VPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIA--SVEVV 245
              +   KS+     + + L L    ++ Q               + +  SI      ++
Sbjct: 120 SAST--PKSNYKIPYAIEELKLIHQKEKEQGQQ------------QGNQESILYRYFNIL 165

Query: 246 GVV-RGSEKPSIFVPANDPSSCQWFYVDVPAIACACG---LPENTVYIEDTNENVNPSN- 300
           GV+ +  E+ S F P N P   QW+ +DV A+A       L  NT  +++T  N  PS+ 
Sbjct: 166 GVISKTKERGSAFTPTNQPEKGQWYSLDVDAMADQLNTEPLMINT--MDETEINSKPSSL 223

Query: 301 PYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLR 344
           P P  K     + SS   + H++Y  TWY+LSA++ F+ F+ +R
Sbjct: 224 PNPQFKRFDNDVESSFHNK-HMSYIGTWYTLSASLFFIYFRYMR 266

Probably involved in the biogenesis of the COX complex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
255579907	347	surfeit locus protein, putative [Ricinus	0.962	0.971	0.645	1e-124
357499121	333	Surfeit locus protein [Medicago truncatu	0.862	0.906	0.691	1e-117
356520667	337	PREDICTED: surfeit locus protein 1-like	0.834	0.866	0.683	1e-116
449439471	345	PREDICTED: surfeit locus protein 1-like	0.851	0.863	0.691	1e-116
449526790	289	PREDICTED: surfeit locus protein 1-like,	0.8	0.968	0.719	1e-115
356531142	333	PREDICTED: surfeit locus protein 1-like	0.945	0.993	0.615	1e-115
225456189	349	PREDICTED: surfeit locus protein 1 isofo	0.974	0.977	0.659	1e-114
18401683	354	Surfeit locus 1 cytochrome c oxidase bio	0.828	0.819	0.630	1e-107
297830428	354	hypothetical protein ARALYDRAFT_479277 [	0.831	0.822	0.632	1e-102
224118614	243	predicted protein [Populus trichocarpa]	0.691	0.995	0.732	1e-101

>gi|255579907|ref|XP_002530789.1| surfeit locus protein, putative [Ricinus communis] gi|223529644|gb|EEF31590.1| surfeit locus protein, putative [Ricinus communis]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/347 (64%), Positives = 276/347 (79%), Gaps = 10/347 (2%)

Query: 8   AVASISKTLTKLGGG---SSFLLNHRAPP---RLYSSSAAAALSSAPQLSSSSQDQENVR 61
           A+ SISKTLT++G G   S   L  +  P    L+ + +AAA+S  P   +      +VR
Sbjct: 3   ALTSISKTLTRVGAGGGGSVATLQMQLGPYSNALFCTLSAAAISQTPSTFTPQSQGVHVR 62

Query: 62  KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLT 121
           +     S WSKWLLFLPG I+FGLGTWQIFRRQ+KIKML+YRQ RL ++P++ +  SP +
Sbjct: 63  EKER-ISKWSKWLLFLPGTITFGLGTWQIFRRQEKIKMLDYRQKRLAVEPMKFDDISPSS 121

Query: 122 EDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPV 181
           E L +LEFRRV C+GV DE+RSI+VGPRSRSISGVTENGYYVITPLMPIPNNP+SV+SP+
Sbjct: 122 EQLDTLEFRRVACKGVLDEKRSIFVGPRSRSISGVTENGYYVITPLMPIPNNPESVRSPI 181

Query: 182 LVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIAS 241
           LVNRGWVPR W+++S E+S+D EQP   + + Q+ ++ SWW FW KK  +VED +PS+ S
Sbjct: 182 LVNRGWVPRIWKERSLEISQDDEQP---SLAAQKGERISWWKFWSKKQKVVEDQIPSLTS 238

Query: 242 VEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNP 301
           VEVVGV+RGSEKPSIFVP N P S QWFY+DVPA+A ACGLPENT+Y+ED +EN++ S P
Sbjct: 239 VEVVGVIRGSEKPSIFVPENVPMSGQWFYIDVPAVAHACGLPENTIYVEDISENISSSCP 298

Query: 302 YPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKS 348
           YPLPKDV+TL+RSSVMPQDHLNYTLTWYSLSAAVTFMAFKRL P++S
Sbjct: 299 YPLPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLNPRRS 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499121|ref|XP_003619849.1| Surfeit locus protein [Medicago truncatula] gi|355494864|gb|AES76067.1| Surfeit locus protein [Medicago truncatula]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/314 (69%), Positives = 248/314 (78%), Gaps = 12/314 (3%)

Query: 38  SSAAAALSSAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKI 97
           SSAAA   S P LSSSS        G A     SKW L+LPGAI+FGLG+WQI RR+DKI
Sbjct: 31  SSAAAVSDSDPTLSSSSDSN-----GKA-----SKWWLYLPGAIAFGLGSWQIVRREDKI 80

Query: 98  KMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVT 157
           KMLEYR  RLQM+PL+ +   P +E+L SLEFR+V+C+GVFD+++SIYVGPRSRSISGVT
Sbjct: 81  KMLEYRGKRLQMEPLKFSGAYPSSEELDSLEFRKVVCKGVFDDKKSIYVGPRSRSISGVT 140

Query: 158 ENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQ 217
           ENGYYVITPLMP+ ++P SV SP+LVNRGWVPRSW+DK  E S D EQ  +  PS  Q+ 
Sbjct: 141 ENGYYVITPLMPVHDHPDSVSSPILVNRGWVPRSWKDKFLEASHD-EQFADPLPSPSQAD 199

Query: 218 QS-SWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAI 276
            + SWW FW K+P   ED VPSI   EVVGVVRGSE PSIFVPANDP S QWFY+DVP+I
Sbjct: 200 GTRSWWRFWSKEPVSSEDQVPSITPNEVVGVVRGSENPSIFVPANDPGSSQWFYIDVPSI 259

Query: 277 ACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVT 336
           A +CGLPENTVY++D NENVNPSNPYPLPKDV+ L+RSSVMPQDHLNY LTWYSLSAAVT
Sbjct: 260 ARSCGLPENTVYVDDINENVNPSNPYPLPKDVNALIRSSVMPQDHLNYILTWYSLSAAVT 319

Query: 337 FMAFKRLRPKKSRR 350
           FMAFKRLR    RR
Sbjct: 320 FMAFKRLRQSNKRR 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520667|ref|XP_003528982.1| PREDICTED: surfeit locus protein 1-like [Glycine max]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/303 (68%), Positives = 238/303 (78%), Gaps = 11/303 (3%)

Query: 48  PQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRL 107
           P L SSS  Q             S+WLLFLPGAI+FGLGTWQI RR++KIKMLEYR+ RL
Sbjct: 41  PTLPSSSDSQRKA----------SRWLLFLPGAITFGLGTWQIGRREEKIKMLEYREKRL 90

Query: 108 QMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPL 167
           QM+PL+ +      E+L SLEFR+V+C+G FD+++S+YVGPRSRSISGVTENGYY+ITPL
Sbjct: 91  QMEPLKFSSAYSSDEELDSLEFRKVVCKGYFDDKKSVYVGPRSRSISGVTENGYYIITPL 150

Query: 168 MPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLK 227
           MP+PN P SV  P+LVNRGWVPRSW+DK  E S+D +    L          SWW FW K
Sbjct: 151 MPVPNCPDSVSIPILVNRGWVPRSWKDKFLEASQDEDLEDALPSPSHVDGSKSWWRFWSK 210

Query: 228 KPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTV 287
           KP ++ED V S+  +EVVGVVRGSEKPSIFVPANDP S QWFYVDVP IA ACGLPENT+
Sbjct: 211 KP-VIEDQVASVTPIEVVGVVRGSEKPSIFVPANDPGSSQWFYVDVPGIARACGLPENTI 269

Query: 288 YIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKK 347
           Y EDTNENVNPSNPYP+PKDV+TL+RSSVMP+DHLNYTLTWYSLSAAVTFMAFKRLR K 
Sbjct: 270 YFEDTNENVNPSNPYPVPKDVNTLIRSSVMPRDHLNYTLTWYSLSAAVTFMAFKRLRQKN 329

Query: 348 SRR 350
            RR
Sbjct: 330 KRR 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439471|ref|XP_004137509.1| PREDICTED: surfeit locus protein 1-like [Cucumis sativus]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/305 (69%), Positives = 251/305 (82%), Gaps = 7/305 (2%)

Query: 48  PQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRL 107
           P  SS SQ Q+  R+     S  SKWLLFLPGA++FGLGTWQIFRRQ+KI+ML+YR+ RL
Sbjct: 46  PNSSSLSQPQQKQRE-----SRLSKWLLFLPGALTFGLGTWQIFRRQEKIEMLDYRRKRL 100

Query: 108 QMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPL 167
            M+P+ +N    L + L  LEFRRVIC+GVFDE++SIYVGPRSRSISGVTENG+YVITPL
Sbjct: 101 LMEPVNINNLLSLEDKLDDLEFRRVICKGVFDEKKSIYVGPRSRSISGVTENGHYVITPL 160

Query: 168 MPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRD-SEQPLNLAPS-VQQSQQSSWWWFW 225
           MPIP  P SV+SPVLVNRGW PR+W++K+ EV++  SEQ  ++ PS VQ  ++SSWW FW
Sbjct: 161 MPIPGLPDSVQSPVLVNRGWAPRTWKEKALEVNQQGSEQSSDIVPSLVQGGERSSWWKFW 220

Query: 226 LKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPEN 285
            KK   +E+++  I  VEV+GVVR SEKPSIFVPANDP S QWFYVDVPAIA + GLPE+
Sbjct: 221 SKKTESLENEITPITPVEVIGVVRTSEKPSIFVPANDPGSRQWFYVDVPAIARSSGLPED 280

Query: 286 TVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRP 345
           T+Y+ED NENVNPS+PYP+PKDV+TL+RSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLR 
Sbjct: 281 TIYVEDINENVNPSDPYPIPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRQ 340

Query: 346 KKSRR 350
           K SRR
Sbjct: 341 KTSRR 345

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526790|ref|XP_004170396.1| PREDICTED: surfeit locus protein 1-like, partial [Cucumis sativus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/282 (71%), Positives = 241/282 (85%), Gaps = 2/282 (0%)

Query: 71  SKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFR 130
           SKWLLFLPGA++FGLGTWQIFRRQ+KI+ML+YR+ RL M+P+ +N    L + L  LEFR
Sbjct: 8   SKWLLFLPGALTFGLGTWQIFRRQEKIEMLDYRRKRLLMEPVNINNLLSLEDKLDDLEFR 67

Query: 131 RVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPR 190
           RVIC+GVFDE++SIYVGPRSRSISGVTENG+YVITPLMPIP  P SV+SPVLVNRGW PR
Sbjct: 68  RVICKGVFDEKKSIYVGPRSRSISGVTENGHYVITPLMPIPGLPDSVQSPVLVNRGWAPR 127

Query: 191 SWRDKSSEVSRD-SEQPLNLAPS-VQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVGVV 248
           +W++K+ EV++  SEQ  ++ PS VQ  ++SSWW FW KK   +E+++  I  VEV+GVV
Sbjct: 128 TWKEKALEVNQQGSEQSSDIVPSLVQGGERSSWWKFWSKKTESLENEITPITPVEVIGVV 187

Query: 249 RGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDV 308
           R SEKPSIFVPANDP S QWFYVDVPAIA + GLPE+T+Y+ED NENVNPS+PYP+PKDV
Sbjct: 188 RTSEKPSIFVPANDPGSRQWFYVDVPAIARSSGLPEDTIYVEDINENVNPSDPYPIPKDV 247

Query: 309 STLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
           +TL+RSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLR K SRR
Sbjct: 248 NTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRQKTSRR 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531142|ref|XP_003534137.1| PREDICTED: surfeit locus protein 1-like [Glycine max]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/343 (61%), Positives = 254/343 (74%), Gaps = 12/343 (3%)

Query: 9   VASISKTLTKLGGGSS-FLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVRKGSAPS 67
           +  +S+T    GG +S   L  R       ++ ++   S P L SSS+ Q   RK S   
Sbjct: 2   LTHLSRTPAACGGATSKHFLVLRQFSSAAGAAVSSVSDSDPTLPSSSESQ---RKAS--- 55

Query: 68  STWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSL 127
               +WLLFLPGAI+FGLGTWQI RR++KIKMLEYR+NRLQM+PL+ +      E+L SL
Sbjct: 56  ----RWLLFLPGAITFGLGTWQIIRREEKIKMLEYRENRLQMEPLKFSSAYSSNEELDSL 111

Query: 128 EFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGW 187
           EFR+V+C+G FD+++SIYVGPRSRSISG+TENGYY+ITPLMP+PN P SV  P+LVNRGW
Sbjct: 112 EFRKVVCKGYFDDKKSIYVGPRSRSISGITENGYYIITPLMPVPNCPDSVSFPILVNRGW 171

Query: 188 VPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVGV 247
           VPRSW+DK  E S D +    L          SWW FW +KP ++ED V S+  +EVVGV
Sbjct: 172 VPRSWKDKFLEASEDEDLEDALPSPSHDDGTKSWWRFWSRKP-VIEDQVASVTPIEVVGV 230

Query: 248 VRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKD 307
           VR SEKPSIFVPANDP + QWFYVDVP IA ACGLPENT+Y+ED NE+VNPSNPYP+PKD
Sbjct: 231 VRESEKPSIFVPANDPKASQWFYVDVPGIARACGLPENTIYVEDINEDVNPSNPYPVPKD 290

Query: 308 VSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
           V+TL+RSSVMP+DHLNYTLTW SLSAAVTFMAFKRLR K   R
Sbjct: 291 VNTLIRSSVMPRDHLNYTLTWCSLSAAVTFMAFKRLRQKNKWR 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456189|ref|XP_002282742.1| PREDICTED: surfeit locus protein 1 isoform 1 [Vitis vinifera] gi|359491038|ref|XP_003634208.1| PREDICTED: surfeit locus protein 1 isoform 2 [Vitis vinifera] gi|297734345|emb|CBI15592.3| unnamed protein product [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/352 (65%), Positives = 274/352 (77%), Gaps = 11/352 (3%)

Query: 7   MAVASISKTLTKLGGGSSFLLNHRAP----PRLYSSSAAAALSSAPQLSSSSQDQ---EN 59
           MA ASISKTL+K   G+  L NH  P    P LYSSSA  + S++  +SS+S      E 
Sbjct: 1   MAAASISKTLSK---GARSLKNHWIPTPLFPHLYSSSAPVSASASASVSSASSVSSLTEP 57

Query: 60  VRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSP 119
              G      W+KWLLF+PGA++FGLG+WQI RRQDKI ML+YR+ RL ++P+  +    
Sbjct: 58  QSSGGEQRRGWTKWLLFVPGAVTFGLGSWQILRRQDKINMLDYRRKRLDLEPIPGSNLYS 117

Query: 120 LTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKS 179
           L E L SLEFRRV  +G FDE++SIYVGPRSRSISGVTENGYY+ITPLMPIP++P SV+S
Sbjct: 118 LNEKLDSLEFRRVKAKGFFDEKKSIYVGPRSRSISGVTENGYYLITPLMPIPDDPDSVQS 177

Query: 180 PVLVNRGWVPRSWRDKSSEVSRDSEQPLNLA-PSVQQSQQSSWWWFWLKKPNIVEDDVPS 238
           P+LVNRGWVPRSWRDK  +     EQ  N+A PS+Q+S++SSWW FW KKP  VED VP+
Sbjct: 178 PILVNRGWVPRSWRDKFLQDLPVDEQSKNIASPSIQESERSSWWRFWSKKPKTVEDQVPA 237

Query: 239 IASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNP 298
           +  VEVVGVVRGSEKPSIFVP ND  S QWFYVDVPAI+ A GL ENT+Y++D NENVNP
Sbjct: 238 VTPVEVVGVVRGSEKPSIFVPENDLCSRQWFYVDVPAISRASGLAENTIYVDDINENVNP 297

Query: 299 SNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
           SNPYP+PK+VSTL+RSSVMPQDHLNYTLTWYSLSAAVTFMAFKR+ PKKSRR
Sbjct: 298 SNPYPVPKEVSTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRITPKKSRR 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401683|ref|NP_566592.1| Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana] gi|75203836|sp|Q9SE51.1|SURF1_ARATH RecName: Full=Surfeit locus protein 1; Short=Surfeit 1; AltName: Full=Cytochrome c oxidase assembly protein SURF1; AltName: Full=Protein EMBRYO DEFECTIVE 3121; AltName: Full=Surfeit locus 1 cytochrome c oxidase biogenesis protein gi|6630873|gb|AAF19609.1|AF182953_1 Surfeit 1 [Arabidopsis thaliana] gi|89000977|gb|ABD59078.1| At3g17910 [Arabidopsis thaliana] gi|332642502|gb|AEE76023.1| Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/298 (63%), Positives = 238/298 (79%), Gaps = 8/298 (2%)

Query: 55  QDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL 114
             QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++L
Sbjct: 63  PPQENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKL 117

Query: 115 NITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNP 174
           NI  PL ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISG+TENG++VITPLMPIP + 
Sbjct: 118 NIDHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDL 177

Query: 175 QSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQ--QSQQSSWWWFWLKKPNIV 232
            S++SP+LVNRGWVPRSWR+KS E S ++E   N +   +   ++  SWW FW K P I 
Sbjct: 178 DSMQSPILVNRGWVPRSWREKSQE-SAEAEFIANQSTKAKSPSNEPKSWWKFWSKTPVIT 236

Query: 233 EDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDT 292
           ++ + ++  VEVVGV+RG E PSIFVP+NDPS+ QWFYVDVPA+A A GLPENT+Y+ED 
Sbjct: 237 KEHISAVKPVEVVGVIRGGENPSIFVPSNDPSTGQWFYVDVPAMARAVGLPENTIYVEDV 296

Query: 293 NENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
           +E+V+ S PYP+PKD++TL+RS VMPQDHLNY++TWYSLSAAVTFMA+KRL+ K  RR
Sbjct: 297 HEHVDRSRPYPVPKDINTLIRSKVMPQDHLNYSITWYSLSAAVTFMAYKRLKAKPVRR 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830428|ref|XP_002883096.1| hypothetical protein ARALYDRAFT_479277 [Arabidopsis lyrata subsp. lyrata] gi|297328936|gb|EFH59355.1| hypothetical protein ARALYDRAFT_479277 [Arabidopsis lyrata subsp. lyrata]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/299 (63%), Positives = 238/299 (79%), Gaps = 8/299 (2%)

Query: 54  SQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLR 113
           +  QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++
Sbjct: 62  APPQENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQRRLNMEPMK 116

Query: 114 LNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNN 173
           LNI  P  ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISGVTENG+Y+ITPLMPIP +
Sbjct: 117 LNIDHPPDKNLDALEFRRVSCKGVFDEQRSIYLGPRSRSISGVTENGFYLITPLMPIPGD 176

Query: 174 PQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQ--QSQQSSWWWFWLKKPNI 231
             S++SP+LVNRGWVPRSWR+KS E S +++   N +   +   ++  SWW FW K P I
Sbjct: 177 LDSMQSPILVNRGWVPRSWREKSPE-STEADFAANQSTKAESPSNEPKSWWKFWSKTPVI 235

Query: 232 VEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIED 291
            ++ V  +  VEVVGV+RG E PSIFVP+NDPSS QWFYVDVPA+A A GLPENT+Y+ED
Sbjct: 236 TKEHVSVVKPVEVVGVIRGGENPSIFVPSNDPSSGQWFYVDVPAMARAVGLPENTIYVED 295

Query: 292 TNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
            +E+V+ S PYP+PKD++TL+RS VMPQDHLNY++TWYSLSAAVTFMA+KRL+ K +RR
Sbjct: 296 VHEHVDRSRPYPVPKDINTLIRSKVMPQDHLNYSITWYSLSAAVTFMAYKRLKAKPTRR 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118614|ref|XP_002317864.1| predicted protein [Populus trichocarpa] gi|222858537|gb|EEE96084.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/243 (73%), Positives = 207/243 (85%), Gaps = 1/243 (0%)

Query: 109 MDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLM 168
           M+P++ N  SP +E L  LEFRRV C+GVF ++ SIYVGPRSR+ISG+TENGYY+ITPLM
Sbjct: 1   MEPMKFNDISPSSEQLDDLEFRRVACKGVFYDKMSIYVGPRSRNISGITENGYYIITPLM 60

Query: 169 PIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLA-PSVQQSQQSSWWWFWLK 227
           P+  NP+ V+SP+LVNRGWVPRSW+D S EVS+D EQP ++A  S Q S++SSWW FW +
Sbjct: 61  PVSKNPECVQSPILVNRGWVPRSWKDNSLEVSQDDEQPSDIAMASAQGSEKSSWWRFWSR 120

Query: 228 KPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTV 287
           KP  +E+ +PSIA VEVVGVVRGSEKPSIFVPANDPSS QWFYVDVPAIA  CGLPENT+
Sbjct: 121 KPKTIEEKIPSIAPVEVVGVVRGSEKPSIFVPANDPSSFQWFYVDVPAIARVCGLPENTI 180

Query: 288 YIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKK 347
           Y+ED NEN N   PYP+PKDV+ L+RSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKK
Sbjct: 181 YVEDINENFNSGCPYPVPKDVNALIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKK 240

Query: 348 SRR 350
           SRR
Sbjct: 241 SRR 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2088510	354	SURF1 "AT3G17910" [Arabidopsis	0.822	0.813	0.587	2.5e-90
TAIR|locus:2198030	384	AT1G48510 "AT1G48510" [Arabido	0.774	0.705	0.404	1.5e-49
RGD|620527	306	Surf1 "surfeit 1" [Rattus norv	0.334	0.382	0.364	2.6e-22
UNIPROTKB|F1M9B1	337	Surf4 "Protein Surf4" [Rattus	0.334	0.347	0.364	7.2e-22
UNIPROTKB|Q15526	300	SURF1 "Surfeit locus protein 1	0.337	0.393	0.343	4.5e-21
MGI|MGI:98443	306	Surf1 "surfeit gene 1" [Mus mu	0.337	0.385	0.345	5e-21
DICTYBASE|DDB_G0274001	270	surf1-2 "surf1 family protein"	0.297	0.385	0.366	5.5e-21
DICTYBASE|DDB_G0272889	270	surf1-1 "surf1 family protein"	0.297	0.385	0.366	5.5e-21
UNIPROTKB|F1PFN9	301	SURF1 "Uncharacterized protein	0.337	0.392	0.335	2.6e-20
RGD|1561980	733	Surf4 "surfeit 4" [Rattus norv	0.334	0.159	0.364	2.6e-20

TAIR|locus:2088510 SURF1 "AT3G17910" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 174/296 (58%), Positives = 220/296 (74%)

Query:    57 QENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNI 116
             QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++LNI
Sbjct:    65 QENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKLNI 119

Query:   117 TSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQS 176
               PL ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISG+TENG++VITPLMPIP +  S
Sbjct:   120 DHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDLDS 179

Query:   177 VKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPXXXXXXXXXXXXXXL--KKPNIVED 234
             ++SP+LVNRGWVPRSWR+KS E S ++E   N +                  K P I ++
Sbjct:   180 MQSPILVNRGWVPRSWREKSQE-SAEAEFIANQSTKAKSPSNEPKSWWKFWSKTPVITKE 238

Query:   235 DVPSIAXXXXXXXXXXXXKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNE 294
              + ++              PSIFVP+NDPS+ QWFYVDVPA+A A GLPENT+Y+ED +E
Sbjct:   239 HISAVKPVEVVGVIRGGENPSIFVPSNDPSTGQWFYVDVPAMARAVGLPENTIYVEDVHE 298

Query:   295 NVNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR 350
             +V+ S PYP+PKD++TL+RS VMPQDHLNY++TWYSLSAAVTFMA+KRL+ K  RR
Sbjct:   299 HVDRSRPYPVPKDINTLIRSKVMPQDHLNYSITWYSLSAAVTFMAYKRLKAKPVRR 354

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2198030 AT1G48510 "AT1G48510" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 117/289 (40%), Positives = 162/289 (56%)

Query:    71 SKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFR 130
             S  L +L G  ++GLG    F  Q +++ L+ R+  L+M P++LN T    +DL  L FR
Sbjct:    54 SALLWYLVGFTTYGLGETYKFL-QTQVEHLDSRKQCLEMKPMKLNTT----KDLDGLGFR 108

Query:   131 RVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPR 190
             RV+C+G+FDEQRSIYVGP+ RS+S  +E G+YVITPL+PIPN P S+KSP+LVNRGWVP 
Sbjct:   109 RVVCKGIFDEQRSIYVGPKPRSMSKSSEIGFYVITPLLPIPNEPNSMKSPILVNRGWVPS 168

Query:   191 SWRDKSSE---------VSRDSEQPLNLAPXXXXXXXXXXXXXXLKKPNIVEDDVPSIAX 241
              W++ S E          +++S +   L                L  P IVED V     
Sbjct:   169 DWKENSLESLGTGGLVAAAKESRKANKLL--SSQQSLLSKFWYKLNNPMIVEDQVSRAMH 226

Query:   242 XXXXXXXXXXXKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNP 301
                         P I+   N PSS  WFY+DVP +A A G  E+T+YIE T  +++ S  
Sbjct:   227 VEVVGVVRKSETPGIYTLVNYPSSLAWFYLDVPKLALAMGFGEDTMYIESTYTDMDESRT 286

Query:   302 YPLPKDVSTLLRSSVMPQDHLNYTLTWY--SLSAAVTFMAFKRLRPKKS 348
             YP+P+DV  L RS  +P D+  YT+ W+  SL+  +   +    R  KS
Sbjct:   287 YPVPRDVENLTRSKDIPLDYHLYTVLWHWSSLTCFIKASSILMRRLTKS 335

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

RGD|620527 Surf1 "surfeit 1" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
 Identities = 50/137 (36%), Positives = 81/137 (59%)

Query:    65 APSSTWSKW-LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
             A   ++ +W LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +
Sbjct:    63 AEDDSFLQWFLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--E 118

Query:   124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNN 173
             LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +
Sbjct:   119 LKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----H 173

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   174 CSDLGVTILVNRGFVPR 190

GO:0003674 "molecular_function" evidence=ND

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=ISO

GO:0015992 "proton transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|F1M9B1 Surf4 "Protein Surf4" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
 Identities = 50/137 (36%), Positives = 81/137 (59%)

Query:    65 APSSTWSKW-LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
             A   ++ +W LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +
Sbjct:    94 AEDDSFLQWFLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--E 149

Query:   124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNN 173
             LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +
Sbjct:   150 LKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----H 204

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   205 CSDLGVTILVNRGFVPR 221

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q15526 SURF1 "Surfeit locus protein 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
 Identities = 47/137 (34%), Positives = 78/137 (56%)

Query:    65 APSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDL 124
             A   ++ +W+L L    +FGLGTWQ+ RR+ K+ ++   ++R+  +P+ L    P+  +L
Sbjct:    56 AEDDSFLQWVLLLIPVTAFGLGTWQVQRRKWKLNLIAELESRVLAEPVPLP-ADPM--EL 112

Query:   125 KSLEFRRVICQGVFDEQRSIYVGPRS-----RS------ISGVTENGYYVITPLMPIPNN 173
             K+LE+R V  +G FD  + +Y+ PR+     R       IS  T++G YV+TP      +
Sbjct:   113 KNLEYRPVKVRGCFDHSKELYMMPRTMVDPVREAREGGLISSSTQSGAYVVTPF-----H 167

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   168 CTDLGVTILVNRGFVPR 184

GO:0016021 "integral to membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0008535 "respiratory chain complex IV assembly" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0006754 "ATP biosynthetic process" evidence=IMP

GO:0006119 "oxidative phosphorylation" evidence=IMP

MGI|MGI:98443 Surf1 "surfeit gene 1" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
 Identities = 47/136 (34%), Positives = 78/136 (57%)

Query:    65 APSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDL 124
             A   ++ +W L L  A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +L
Sbjct:    63 AEDDSFLQWFLLLIPATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--EL 119

Query:   125 KSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNNP 174
             K+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G +V+TP      + 
Sbjct:   120 KNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAHVVTPF-----HC 174

Query:   175 QSVKSPVLVNRGWVPR 190
               +   +LVNRG+VPR
Sbjct:   175 SDLGVTILVNRGFVPR 190

GO:0004129 "cytochrome-c oxidase activity" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=ISO

GO:0015992 "proton transport" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IMP

DICTYBASE|DDB_G0274001 surf1-2 "surf1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 171 (65.3 bits), Expect = 5.5e-21, Sum P(2) = 5.5e-21
 Identities = 44/120 (36%), Positives = 65/120 (54%)

Query:    74 LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL------NITSPLTEDLKSL 127
             L F+   I+FGLGTWQ++R   K ++++  ++R++ DP+ L      N       DL   
Sbjct:    10 LFFIFPVIAFGLGTWQVYRYDWKKRLIQRAKDRMEEDPIELSNSFIKNFKGSSFGDLNKY 69

Query:   128 EFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGW 187
             EFRRV   G   + + + +GPRS  I G    GYYVI+PL        S  + +L+NRGW
Sbjct:    70 EFRRVYLNGKVIDNQYVLLGPRS--IDGTL--GYYVISPLQ------LSDGTRILLNRGW 119

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0272889 surf1-1 "surf1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 171 (65.3 bits), Expect = 5.5e-21, Sum P(2) = 5.5e-21
 Identities = 44/120 (36%), Positives = 65/120 (54%)

Query:    74 LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL------NITSPLTEDLKSL 127
             L F+   I+FGLGTWQ++R   K ++++  ++R++ DP+ L      N       DL   
Sbjct:    10 LFFIFPVIAFGLGTWQVYRYDWKKRLIQRAKDRMEEDPIELSNSFIKNFKGSSFGDLNKY 69

Query:   128 EFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGW 187
             EFRRV   G   + + + +GPRS  I G    GYYVI+PL        S  + +L+NRGW
Sbjct:    70 EFRRVYLNGKVIDNQYVLLGPRS--IDGTL--GYYVISPLQ------LSDGTRILLNRGW 119

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1PFN9 SURF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 46/137 (33%), Positives = 76/137 (55%)

Query:    65 APSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDL 124
             A   ++ +W L L    +FGLGTWQ+ RR+ K++++   ++R+  +P+ L    P+  +L
Sbjct:    57 AQEDSFLQWFLLLIPVTAFGLGTWQVQRRKWKLQLIAELESRVMAEPIPLP-ADPM--EL 113

Query:   125 KSLEFRRVICQGVFDEQRSIYVGPRSR-----------SISGVTENGYYVITPLMPIPNN 173
             K+LE+R V  +G FD  + +Y+ PR+             +S   E+G YVITP      +
Sbjct:   114 KNLEYRPVKVRGHFDHSKELYMMPRTMVDPAREAREAGRLSSSPESGAYVITPF-----H 168

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   169 CTDLGVTILVNRGFVPR 185

GO:0016020 "membrane" evidence=IEA

RGD|1561980 Surf4 "surfeit 4" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 50/137 (36%), Positives = 81/137 (59%)

Query:    65 APSSTWSKW-LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
             A   ++ +W LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +
Sbjct:   490 AEDDSFLQWFLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--E 545

Query:   124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNN 173
             LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +
Sbjct:   546 LKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----H 600

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   601 CSDLGVTILVNRGFVPR 617

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0032527 "protein exit from endoplasmic reticulum" evidence=ISO

GO:0034498 "early endosome to Golgi transport" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE51	SURF1_ARATH	No assigned EC number	0.6308	0.8285	0.8192	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
pfam02104	206	pfam02104, SURF1, SURF1 family	7e-46
cd06662	202	cd06662, SURF1, SURF1 superfamily	4e-41
COG3346	252	COG3346, COG3346, Uncharacterized conserved protei	2e-33

>gnl|CDD|216876 pfam02104, SURF1, SURF1 family

 Score =  155 bits (393), Expect = 7e-46
 Identities = 75/264 (28%), Positives = 103/264 (39%), Gaps = 62/264 (23%)

Query: 75  LFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVIC 134
                A+  GLG WQ+ R   K  ++   + RL   P+ L       +D   LE+RRV  
Sbjct: 1   TLALFAVLVGLGFWQLQRLAWKEALIARIEARLAAPPVPL---PEALDDPADLEYRRVTV 57

Query: 135 QGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRD 194
            G F   + + V  R+R        GY V+TP              VLVNRGWVP    D
Sbjct: 58  TGTFLPDQEVLVDNRTRDG----RAGYRVLTPFRLDDG------RTVLVNRGWVPADKAD 107

Query: 195 KSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKP 254
           +S                                       VP    V V G++R  E  
Sbjct: 108 RS-----------------------------------PLPAVPPPGEVTVTGLLRAPEPD 132

Query: 255 ----SIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVST 310
                +F P NDP+  +W+ +DV A+A A GLP    Y++      +     PLP  +  
Sbjct: 133 PRSGGLFTPDNDPAPNRWYSLDVAAMAAALGLPLAPFYLQAD----SDGPLGPLPLPLVD 188

Query: 311 LLRSSVMPQDHLNYTLTWYSLSAA 334
           L      P +HL Y LTW+ L+AA
Sbjct: 189 L------PNNHLGYALTWFGLAAA 206

Length = 206

>gnl|CDD|119401 cd06662, SURF1, SURF1 superfamily

 Score =  142 bits (360), Expect = 4e-41
 Identities = 67/256 (26%), Positives = 101/256 (39%), Gaps = 55/256 (21%)

Query: 83  FGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQR 142
            GLG WQ+ R + K  ++   + RL   P+ L     L   L+ LE+RRV   G F  ++
Sbjct: 2   VGLGFWQLQRAEWKEALIARIEARLAAPPVPLP--ELLAPPLEDLEYRRVTVTGTFLPEK 59

Query: 143 SIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRD 202
            + +  R+R        GY V+TP              VLVNRGWVP             
Sbjct: 60  EVLLDNRTRD----GRPGYEVLTPFRLDDG------RTVLVNRGWVPADA--------DR 101

Query: 203 SEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIASVEVVGVVRGSEKPSIFVPAND 262
              P    P+ +                           V V G +R  E   +F+P ND
Sbjct: 102 PALPAVAPPTGE---------------------------VTVTGRLRPPEPRGLFLPPND 134

Query: 263 PSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDHL 322
           P++  W   D+ A+A A GLP   + ++          P  LP+         ++P  HL
Sbjct: 135 PAANPWQNRDLEAMAQALGLPLVPLVLQLA-----SGAPPGLPRPWPP---PVMIPNKHL 186

Query: 323 NYTLTWYSLSAAVTFM 338
            Y + W++L+AA   +
Sbjct: 187 GYAVQWFALAAAALVL 202

Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder. Length = 202

>gnl|CDD|225883 COG3346, COG3346, Uncharacterized conserved protein [Function unknown]

 Score =  123 bits (311), Expect = 2e-33
 Identities = 76/302 (25%), Positives = 110/302 (36%), Gaps = 65/302 (21%)

Query: 61  RKGSAPSSTWSKWLLFLPG---AISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNIT 117
            + S     W   LL L     AI  GLGTWQ+ R   K+ ++   + RL   P+ L   
Sbjct: 3   LEASTRRRRWLALLLLLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKL 62

Query: 118 SPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSV 177
               +    LE+RRV   G F   + + +  R          GY V+TP           
Sbjct: 63  LDWADSGADLEYRRVTLTGTFLHDKEVLLYARVT----EGGPGYEVLTPFALDDGR---- 114

Query: 178 KSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVP 237
              VLVNRG+VPR  ++ S         P                               
Sbjct: 115 --TVLVNRGFVPRERKEASPRAEGQPAGP------------------------------- 141

Query: 238 SIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTV--YIEDTNEN 295
               V + G++R  E     +P NDP    W+ +D+ A A A GLP+     +++     
Sbjct: 142 ----VTITGLLRPPEPGGSLLPDNDPGKNLWYSIDLAAFAQATGLPDLLAPYFVDAE--- 194

Query: 296 VNPSNPYPLPKDVSTLLRSSVMPQDHLNYTLTWYSLSAAVTFMAF--------KRLRPKK 347
               NP  LP    T++     P +HL+Y LTW+ L+AA+             K  R   
Sbjct: 195 -GQDNPGGLPVGGVTVID---FPNNHLSYALTWFGLAAALLAGLGYYLRREIRKSRRSAA 250

Query: 348 SR 349
             
Sbjct: 251 ES 252

Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
COG3346	252	Uncharacterized conserved protein [Function unknow	100.0
PF02104	212	SURF1: SURF1 family; InterPro: IPR002994 The surfe	100.0
cd06662	202	SURF1 SURF1 superfamily. Surf1/Shy1 has been impli	100.0
KOG1563	288	consensus Mitochondrial protein Surfeit 1/SURF1/SH	100.0
COG4578	128	GutM Glucitol operon activator [Transcription]	88.13

>COG3346 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.2e-49  Score=364.96  Aligned_cols=215  Identities=33%  Similarity=0.568  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEcccccc
Q 018777           73 WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRS  152 (350)
Q Consensus        73 ll~~l~~~i~~~LG~WQl~R~~~K~~li~~~~~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~v~G~fd~~~~ilv~nR~~~  152 (350)
                      +++++.++++++||+||++|++||.++|++++++..++|+++++........++.+||+|+++|+|++++++++++|.. 
T Consensus        18 ~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~ltG~fl~~~e~l~~~r~~-   96 (252)
T COG3346          18 LLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVTLTGTFLHDKEVLLYARVT-   96 (252)
T ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEEEEEEEcCCceEEEeeeee-
Confidence            3445666778899999999999999999999999999999999987643333458999999999999999999999987 


Q ss_pred             CCCCCcccEEEEeeeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCCCCcccccccccchhhhhccCCCcc
Q 018777          153 ISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIV  232 (350)
Q Consensus       153 ~~G~~~~GY~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~p~~~  232 (350)
                       +|  +.||+|+|||++++|      ..|||||||||.+.++...          ..                       
T Consensus        97 -~g--~~Gy~VlTPf~~~dG------~~VLVnRG~vp~e~~~~~~----------r~-----------------------  134 (252)
T COG3346          97 -EG--GPGYEVLTPFALDDG------RTVLVNRGFVPRERKEASP----------RA-----------------------  134 (252)
T ss_pred             -cC--CccEEEecccEecCC------cEEEEeCCcccCcccCCCC----------CC-----------------------
Confidence             57  899999999999886      6999999999998654331          11                       


Q ss_pred             cCCCCCcceEEEEEEEEcCCCCCCCCCCCCCCCCceeeeCHHHHHHHcCCC--CcceEEEecCCCCCCCCCCCCCCCccc
Q 018777          233 EDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLP--ENTVYIEDTNENVNPSNPYPLPKDVST  310 (350)
Q Consensus       233 ~~~~~p~g~v~v~G~lr~~e~~~~~~~~n~~~~~~w~~iD~~~la~~~g~~--~~~~~v~~~~~~~~~~~~~p~p~~~~~  310 (350)
                        ...+.|+|+|+|++|++|+.+.+.+.|++..+.||++|+++||+..|++  +.++|+.....+    +|-.+|....+
T Consensus       135 --~~~~~g~v~I~Gl~r~~e~~~~~l~~nd~~~~~~y~~d~~~~A~~~gl~~~~~~~~v~ae~~~----~pgglp~~~~~  208 (252)
T COG3346         135 --EGQPAGPVTITGLLRPPEPGGSLLPDNDPGKNLWYSIDLAAFAQATGLPDLLAPYFVDAEGQD----NPGGLPVGGVT  208 (252)
T ss_pred             --CCCCCCcEEEEEEEecCCCccccCcccCcccCeeeeccHHHHHhhcCCCcccceeEEecCCCC----CCCCCCCCCCc
Confidence              0234589999999999998888899999999999999999999999999  345444443321    12233333333


Q ss_pred             cccccCCCCCchHHHHHHHHHHHHHHHHH
Q 018777          311 LLRSSVMPQDHLNYTLTWYSLSAAVTFMA  339 (350)
Q Consensus       311 ~~~~~~~p~~Hl~YAlQWf~LA~~~l~~~  339 (350)
                      .+   ..+|+|++||+|||+||+++++++
T Consensus       209 ~~---~~~n~HL~YaitWf~La~~l~~~~  234 (252)
T COG3346         209 VI---DFPNNHLSYALTWFGLAAALLAGL  234 (252)
T ss_pred             ee---ccCCCcceehhHHHHHHHHHHHHH
Confidence            22   358999999999999999987554

>PF02104 SURF1: SURF1 family; InterPro: IPR002994 The surfeit locus 1 gene (SURF1 or surf-1) encodes a conserved protein of about 300 amino-acid residues that seems to be involved in the biogenesis of cytochrome c oxidase []

Probab=100.00  E-value=2.3e-47  Score=350.64  Aligned_cols=210  Identities=35%  Similarity=0.583  Sum_probs=169.1

Q ss_pred             HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEccccccCCC
Q 018777           76 FLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISG  155 (350)
Q Consensus        76 ~l~~~i~~~LG~WQl~R~~~K~~li~~~~~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~v~G~fd~~~~ilv~nR~~~~~G  155 (350)
                      ++++++|++||+||++|++||++++++++++.+++|+++++....+...++.+||+|+++|+|++++++||+||.+  +|
T Consensus         2 l~~~~~~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~~~~~~~~~r~V~~~G~~~~~~~~ll~~r~~--~g   79 (212)
T PF02104_consen    2 LLAIALLVGLGFWQLDRAQWKQALIARIEARLSAPPVPLPDLLDPDALPEDLEYRRVTVSGRFDPEKQILLDNRSR--DG   79 (212)
T ss_pred             ChHHHHHHHHCHHHhCHHHHHHHHHHHHHHHhhCCCcCCccccccccCccccCceEEEEEEEECCCceEEEecccc--CC
Confidence            4567889999999999999999999999999999999998886322235689999999999999999999999998  57


Q ss_pred             CCcccEEEEeeeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCCCCcccccccccchhhhhccCCCcccCC
Q 018777          156 VTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDD  235 (350)
Q Consensus       156 ~~~~GY~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~p~~~~~~  235 (350)
                        +.||+|+|||+++||      ..|||||||||.+..++..        +|. .                     +  .
T Consensus        80 --~~Gy~Vltp~~~~dg------~~vlVnRGWvp~~~~~~~~--------~p~-~---------------------~--p  119 (212)
T PF02104_consen   80 --RPGYHVLTPFRLDDG------RAVLVNRGWVPAEAADRAA--------LPE-Q---------------------V--P  119 (212)
T ss_pred             --CceEEEEEEEEecCC------cEEEEEecccccccCCccc--------ccc-c---------------------c--c
Confidence              899999999999865      6999999999987555431        111 0                     0  0


Q ss_pred             CCCcceEEEEEEEEcCCCC-CCCCCCCCCCCCceeeeCHHHHHHHcCCCCcceEEEecCCCCCCCCCCCCCCCccccccc
Q 018777          236 VPSIASVEVVGVVRGSEKP-SIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRS  314 (350)
Q Consensus       236 ~~p~g~v~v~G~lr~~e~~-~~~~~~n~~~~~~w~~iD~~~la~~~g~~~~~~~v~~~~~~~~~~~~~p~p~~~~~~~~~  314 (350)
                      +++.|+++|+|++++++.+ +.|.++|++..++|+++|+++|++.+|.+..+.|+.+..+..... ..+..   .+   .
T Consensus       120 ~~~~g~~~v~G~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~g~~~~p~~l~~~~~~~~~g-~~~~~---~~---~  192 (212)
T PF02104_consen  120 APPSGEVTVTGRLRPPEPRGGIFTPENDPEPNRWQSIDLEAMAQALGLPLAPFYLQQDADPAAAG-PPPPW---PP---V  192 (212)
T ss_pred             CCCCceEEEEEEEECCCCcCCcCccCCCCCCceEEecCHHHHHHHhCCCCCCeEEEeccCccccc-ccCcC---CC---c
Confidence            2357999999999988877 568888999999999999999999999988888887765421111 11111   11   0


Q ss_pred             cCCCCCchHHHHHHHHHHHH
Q 018777          315 SVMPQDHLNYTLTWYSLSAA  334 (350)
Q Consensus       315 ~~~p~~Hl~YAlQWf~LA~~  334 (350)
                      ...+++|++||+|||+||++
T Consensus       193 ~~~~~~Hl~YA~qWf~lA~~  212 (212)
T PF02104_consen  193 VMPPNKHLGYALQWFGLALA  212 (212)
T ss_pred             CCCccchHHHHHHHHHHHcC
Confidence            25789999999999999974

Vertebrate SURF1 is evolutionary related to yeast protein SHY1. There seems to be two transmembrane regions in these proteins, one in the N-terminal, the other in the C-terminal. Rickettsia prowazekii protein RP733 is also a member of this protein family.; GO: 0016020 membrane

>cd06662 SURF1 SURF1 superfamily

Probab=100.00  E-value=1.2e-44  Score=329.30  Aligned_cols=202  Identities=32%  Similarity=0.570  Sum_probs=165.8

Q ss_pred             HhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEccccccCCCCCcccE
Q 018777           82 SFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGY  161 (350)
Q Consensus        82 ~~~LG~WQl~R~~~K~~li~~~~~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~v~G~fd~~~~ilv~nR~~~~~G~~~~GY  161 (350)
                      |++||+||++|++||++++++++++.+++|+++++.....  ..+.+||+|+++|+|+++++++++||.+  +|  +.||
T Consensus         1 ~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~--~~~~~~r~V~v~G~~~~~~~~ll~~r~~--~g--~~Gy   74 (202)
T cd06662           1 LVGLGFWQLQRAEWKEALIARIEARLAAPPVPLPELLAPP--LEDLEYRRVTVTGTFLPEKEVLLDNRTR--DG--RPGY   74 (202)
T ss_pred             CccccHHHHhHHHHHHHHHHHHHHHhcCCCCCCCcccccc--ccccceEEEEEEEEECCCCEEEEecccc--CC--CCce
Confidence            6799999999999999999999999999999998876422  4678999999999999999999999998  67  8999


Q ss_pred             EEEeeeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCCCCcccccccccchhhhhccCCCcccCCCCCcce
Q 018777          162 YVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEDDVPSIAS  241 (350)
Q Consensus       162 ~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~g~  241 (350)
                      +|++||++.+|      ..|||||||||.+..++.         +|.+                          .++.|+
T Consensus        75 ~vl~p~~~~~g------~~ilVnrGwv~~~~~~~~---------~~~~--------------------------~~p~g~  113 (202)
T cd06662          75 EVLTPFRLDDG------RTVLVNRGWVPADADRPA---------LPAV--------------------------APPTGE  113 (202)
T ss_pred             EEEeeeEECCC------CEEEEECCCCCCCccCcc---------cCCC--------------------------CCCCcc
Confidence            99999999865      589999999998743321         1111                          236799


Q ss_pred             EEEEEEEEcCCCCCCCCCCCCCCCCceeeeCHHHHHHHcCCCCcceEEEecCCCCCCCCCCCCCCCccccccccCCCCCc
Q 018777          242 VEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVSTLLRSSVMPQDH  321 (350)
Q Consensus       242 v~v~G~lr~~e~~~~~~~~n~~~~~~w~~iD~~~la~~~g~~~~~~~v~~~~~~~~~~~~~p~p~~~~~~~~~~~~p~~H  321 (350)
                      ++|+|+++.+|..+.+.+.++...+.|+.+|++.|++.+|.+..+.++.......   ...+.+.  ..   ..+.+++|
T Consensus       114 ~~v~G~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~---~~~~~~~H  185 (202)
T cd06662         114 VTVTGRLRPPEPRGLFLPPNDPAANPWQNRDLEAMAQALGLPLVPLVLQLASGAP---PGLPRPW--PP---PVMIPNKH  185 (202)
T ss_pred             EEEEEEEecCCCCCCcCCCCCcccccccccCHHHHHHHHCCCCCCeEEEecCCCC---CCCCCCC--CC---CCCCCcch
Confidence            9999999999988887777888888899999999999999988877776654321   1112222  11   13679999


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 018777          322 LNYTLTWYSLSAAVTFM  338 (350)
Q Consensus       322 l~YAlQWf~LA~~~l~~  338 (350)
                      ++||+|||+||+++++|
T Consensus       186 l~YA~qWf~lA~~~~~~  202 (202)
T cd06662         186 LGYAVQWFALAAAALVL  202 (202)
T ss_pred             hhhHHHHHHHHHHHHhC
Confidence            99999999999998864

Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.

>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]

Probab=100.00  E-value=1.1e-44  Score=334.29  Aligned_cols=227  Identities=37%  Similarity=0.686  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEcccc
Q 018777           71 SKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRS  150 (350)
Q Consensus        71 ~~ll~~l~~~i~~~LG~WQl~R~~~K~~li~~~~~~~~~~Pv~l~~~~~~~~~~~~~eyrrV~v~G~fd~~~~ilv~nR~  150 (350)
                      +.+|++++.+++|+||+||++|.+||.++|+.+++++.++|++|++..   ++.+++|||+|.++|.|+|+++++|+||.
T Consensus        59 l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~pi~LP~~~---~~l~~lEyrrV~~rG~F~H~kEm~vgPR~  135 (288)
T KOG1563|consen   59 LAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQEPIPLPKDL---DDLEGLEYRRVKLRGIFLHDKEMYVGPRT  135 (288)
T ss_pred             HHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCCCccCCCCh---hHhcccceEEEEEEEEEcccceEEecccc
Confidence            445666666889999999999999999999999999999999998876   35789999999999999999999999999


Q ss_pred             ccCCCCCcccEEEEeeeeecCCCCCCCCceEEEEeccccCCCCCCCcccccCCCCCCCCCcccccccccchhhhhccCCC
Q 018777          151 RSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPN  230 (350)
Q Consensus       151 ~~~~G~~~~GY~VltPf~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~p~  230 (350)
                      +...+....||+|||||.++|+     +..|||||||||....+..                       +|+      | 
T Consensus       136 r~~~~g~~~Gy~vvTPF~~~d~-----g~~ILVNRGWvp~~~v~pe-----------------------tR~------~-  180 (288)
T KOG1563|consen  136 RSGPKGSEIGYYVVTPFILDDN-----GSIILVNRGWVPRKKVEPE-----------------------TRY------P-  180 (288)
T ss_pred             ccCCCCcccceEEeeeeEECCC-----CCEEEEecCccchhhcCcc-----------------------ccc------c-
Confidence            8533323578999999999875     3799999999998643211                       111      1 


Q ss_pred             cccCCCCCcceEEEEEEEEcCCCCCCCCCCCCCCCCceeeeCHHHHHHHcCCCCcceEEEecCCCCCCCCCCCCCCCccc
Q 018777          231 IVEDDVPSIASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPENTVYIEDTNENVNPSNPYPLPKDVST  310 (350)
Q Consensus       231 ~~~~~~~p~g~v~v~G~lr~~e~~~~~~~~n~~~~~~w~~iD~~~la~~~g~~~~~~~v~~~~~~~~~~~~~p~p~~~~~  310 (350)
                          ..++.|+|+|+|+||.+|.+..|++.|.|+.+.||+.|+.+||++.|...  .|++.+-++..-....|++.+.. 
T Consensus       181 ----~~~~~~~v~l~gvVRk~e~r~~f~~~n~pe~~~w~y~Dl~~mA~~~G~~P--i~ida~y~~~~~~~g~PIG~q~~-  253 (288)
T KOG1563|consen  181 ----SGQPEGHVELVGVVRKTETRPQFTPVNKPESNVWYYRDLPKMARATGTEP--ILIDALYDDMDTKRGGPIGGQTR-  253 (288)
T ss_pred             ----cCCccceEEEEEEEecCCCCCCcccccCCcccceeecCHHHHHHHcCCCc--eEeecccCccccccCCCCCCCce-
Confidence                13467999999999999999999999999999999999999999999763  67777655322222345555444 


Q ss_pred             cccccCCCCCchHHHHHHHHHHHHHHHHHHHhhccc
Q 018777          311 LLRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPK  346 (350)
Q Consensus       311 ~~~~~~~p~~Hl~YAlQWf~LA~~~l~~~~~~~r~~  346 (350)
                          ....|+|+.|-+|||+|+++..+|++..+++.
T Consensus       254 ----v~lrN~Hl~YlvTWy~Ls~~t~~l~~~~~~k~  285 (288)
T KOG1563|consen  254 ----VTLRNEHLQYLVTWYSLSFVTSILWFVKFLKG  285 (288)
T ss_pred             ----eeeecCCcceEEEeehHHHHHHHHHHHHHhcc
Confidence                24579999999999999999999998877654

>COG4578 GutM Glucitol operon activator [Transcription]

Probab=88.13  E-value=0.49  Score=40.44  Aligned_cols=28  Identities=25%  Similarity=0.202  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 018777           69 TWSKWLLFLPGAISFGLGTWQIFRRQDK   96 (350)
Q Consensus        69 ~w~~ll~~l~~~i~~~LG~WQl~R~~~K   96 (350)
                      .|+.++++++.++++.||-||+.|.+.-
T Consensus         9 ~~lI~~~vi~w~~q~algwwQ~srfq~a   36 (128)
T COG4578           9 PALIALAVIAWCAQLALGWWQWSRFQSA   36 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777788899999999999863

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00