Citrus Sinensis ID: 018779

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNSFNG
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHcccccccccccccHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHccccccccEEEccccccccEEEEcccccccccEEEEcEEccccccEEcccccEEEEEccEEEEEEcccccEEEEEEEEccccEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHccccEEcHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccEEEcccEEEccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEccHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccEEEEccccccEEEEEcccccccccEEEEEcccccccHHHHHHHHHHccccccccccccEEEEEccEEEEEEcccccccHHHHHcccccEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHccccEcHHHHHHHHHHHHHHHcccEEEEEccccEEEEcEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MIWGIVRRKITSAQVIGqsvskigprchatAQKEAILTCRgfqrvqrssyhilsgnyvcstpRSEVIELIQkgsfigsrsrlfssdsgdlvDAVVpfmgesitdgTLAKFLkqpgdrvemdepiaqietdkvtidvaspqagVIQNLIakegetvepgAKIAVISKSGEGVAQAASAEkaaaqpppaeekpsaekqtpeseaapavkdktpseppptakkptsppskpmasepqlppkdrerrvpmTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALqhqpvvnavidgddiiyrdyIDISFAVgtkkvcdnsfng
Flexible Loop (DISEMBL)
miwgivrrkitsaqvigqsvskigprCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFmgesitdgtLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLiakegetvePGAKIAVISKSGEGVAQAASAEkaaaqpppaeekpsaekqtpeseaapavkdktpseppptakkptsppskpmasepqlppkdrerrvpmTRLRKRvatrlkdsqntfallttfnevdmtNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAvgtkkvcdnsfng
Low Complexity Region (SEG)
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVaqaasaekaaaqpppaeekpsaekqTPESEAAPAVKDktpseppptakkptsppskpMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVidgddiiyrdyidiSFAVGTKKVCDNSFNG
Disordered region (IsUnstruct)
*IWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQ**********IAQIETDKVTIDVASPQAGVIQNLIAKE*************************************************************************************************************QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVC******
Disordered Region (DISOPRED)
**************************************************************************FIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIA**************************************************************************************LRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDN****
Disordered Region (DISEMBL)
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK*************************************************************************RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNSFNG
Disordered Region (DISPRO)
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS****************************************************************************VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNSFNG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9FLQ4	464	Dihydrolipoyllysine-resid	yes	no	0.748	0.564	0.697	2e-96
Q8H107	464	Dihydrolipoyllysine-resid	no	no	0.8	0.603	0.632	4e-95
Q1RHI5	400	Dihydrolipoyllysine-resid	yes	no	0.691	0.605	0.435	8e-49
Q92J43	395	Dihydrolipoyllysine-resid	yes	no	0.72	0.637	0.422	1e-48
Q6FYD4	410	Dihydrolipoyllysine-resid	yes	no	0.694	0.592	0.402	2e-48
Q90512	409	Dihydrolipoyllysine-resid	N/A	no	0.688	0.589	0.439	8e-47
Q4UKI7	401	Dihydrolipoyllysine-resid	yes	no	0.711	0.620	0.397	3e-46
Q8GCY1	411	Dihydrolipoyllysine-resid	N/A	no	0.708	0.603	0.393	7e-46
Q869Y7	439	Dihydrolipoyllysine-resid	yes	no	0.688	0.548	0.441	8e-45
P19262	463	Dihydrolipoyllysine-resid	yes	no	0.7	0.529	0.427	3e-44

>sp|Q9FLQ4|ODO2A_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1

 Score =  352 bits (904), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/271 (69%), Positives = 208/271 (76%), Gaps = 9/271 (3%)

Query: 72  KGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131
           +G+ +    R FSSDSGD+V+AVVP MGESITDGTLA FLK+PGDRVE DE IAQIETDK
Sbjct: 75  QGTALQRWVRPFSSDSGDVVEAVVPHMGESITDGTLAAFLKKPGDRVEADEAIAQIETDK 134

Query: 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKP 191
           VTID+ASP +GVIQ  + KEG+TVEPG K+A IS S + V+  A +EKA           
Sbjct: 135 VTIDIASPASGVIQEFLVKEGDTVEPGNKVARISTSADAVSHVAPSEKAPE--------- 185

Query: 192 SAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRK 251
               +       P V+    +E P     P  PPSK  A EPQLPPKDRERRVPMTRLRK
Sbjct: 186 KPAPKPSPPAEKPKVESTKVAEKPKAPSPPPPPPSKQSAKEPQLPPKDRERRVPMTRLRK 245

Query: 252 RVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSAL 311
           RVATRLKDSQNTFALLTTFNEVDMTNLMKLRS YKDAFLEKHGVKLGLMSGF+KAAVSAL
Sbjct: 246 RVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKLGLMSGFIKAAVSAL 305

Query: 312 QHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           QHQPVVNAVIDGDDIIYRDY+DIS AVGT K
Sbjct: 306 QHQPVVNAVIDGDDIIYRDYVDISIAVGTSK 336

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 6EC: 1

>sp|Q8H107|ODO2B_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana GN=At4g26910 PE=1 SV=2

 Score =  348 bits (893), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 188/297 (63%), Positives = 217/297 (73%), Gaps = 17/297 (5%)

Query: 49  SYHILS---GNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDG 105
           S+H L+   GN   S   S V   +Q+        R FS+++GD V+AVVP MGESITDG
Sbjct: 54  SFHNLALPAGNSGISRSASLVSSTLQRWV------RPFSAETGDTVEAVVPHMGESITDG 107

Query: 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165
           TLA FLK+PG+RV+ DE IAQIETDKVTID+ASP +GVIQ  +  EG+TVEPG K+A+IS
Sbjct: 108 TLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVNEGDTVEPGTKVAIIS 167

Query: 166 KSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPP 225
           KS +  +Q   ++K           P+ +KQ P  E+AP  +              + PP
Sbjct: 168 KSEDTASQVTPSQKIPETTDTKPSPPAEDKQKPRVESAPVAEK--------PKAPSSPPP 219

Query: 226 SKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDY 285
            K  A EPQLPPK+RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS Y
Sbjct: 220 PKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQY 279

Query: 286 KDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           KDAF EKHGVKLGLMSGF+KAAVSALQHQPVVNAVIDGDDIIYRDY+DIS AVGT K
Sbjct: 280 KDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSK 336

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q1RHI5|ODO2_RICBR Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/280 (43%), Positives = 167/280 (59%), Gaps = 38/280 (13%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           V  +VP +GES+T+ T+AK+ K+ GD V+ DE + +IET+KVT++V SP  G I  +I  
Sbjct: 3   VKIIVPSLGESVTEATIAKWYKKEGDAVKTDELLLEIETEKVTLEVNSPCNGTIGKIIKA 62

Query: 151 EGETVEPGAKIAVISKSGEGVA---QAASAEKAAAQPPPAEE-----------KPSAEKQ 196
           +G  V  G +I  I++ GE VA     A+  + A+QP P +             PS +K 
Sbjct: 63  DGANVAVGEEIGDINE-GEAVATNSNEAAKPQTASQPVPEKVPKKPAVANNTLAPSVQKL 121

Query: 197 TPESEAAP-----AVKD---------KTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRER 242
             E++  P       KD         +T + P P A   TS  S   ASE      +R  
Sbjct: 122 VTENKLDPNNIKGTGKDGRITKGDVLETMNAPTPAA---TSTTSSAKASE------ERVE 172

Query: 243 RVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSG 302
           RV M+RLRK +A RLKDSQNT A+LTTFNE+DM+ ++ LR  YKD F +KHGVKLG MS 
Sbjct: 173 RVRMSRLRKTIAQRLKDSQNTAAILTTFNEIDMSKVIALRGKYKDEFEKKHGVKLGFMSF 232

Query: 303 FVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           FV+A + AL+  P VNA IDGDD++Y++Y DI  AVGT++
Sbjct: 233 FVRATIEALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQ 272

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q92J43|ODO2_RICCN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sucB PE=3 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/265 (42%), Positives = 156/265 (58%), Gaps = 13/265 (4%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           V  +VP +GESIT+ T+AK+ K+ GD V+ DE + +IET+KVT++V +P  G I  +   
Sbjct: 3   VKIIVPSLGESITEATIAKWYKKQGDSVKTDELLLEIETEKVTLEVNAPCNGTIGKISKT 62

Query: 151 EGETVEPGAKIAVISKSGEGVAQAASAEKAAAQP--PPAEEKP---------SAEKQTPE 199
           EG  V  G +I  I++         + E A AQ    P  EKP         S +K   E
Sbjct: 63  EGANVAVGEEIGEINEGASANTAGTNNESAKAQAVTQPTSEKPAVANNTLAPSVQKLVTE 122

Query: 200 SEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRER--RVPMTRLRKRVATRL 257
           ++  P     T  +   T     +  +    S P +   + ER  RV M+RLRK +A RL
Sbjct: 123 NKLDPNNIKGTGRDGRITKGDVLATINTTTTSAPAISKSNEERVQRVRMSRLRKTIAQRL 182

Query: 258 KDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV 317
           KDSQNT A+LTTFNE+DM+ ++ LR+ YK+ F +KH VKLG MS FVKA + AL+  P V
Sbjct: 183 KDSQNTAAILTTFNEIDMSKVIALRNQYKEEFEKKHAVKLGFMSFFVKATIEALKLIPSV 242

Query: 318 NAVIDGDDIIYRDYIDISFAVGTKK 342
           NA IDGDD++Y++Y DI  AVGT++
Sbjct: 243 NAEIDGDDLVYKNYYDIGVAVGTEQ 267

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q6FYD4|ODO2_BARQU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana (strain Toulouse) GN=sucB PE=3 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/281 (40%), Positives = 158/281 (56%), Gaps = 38/281 (13%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           VP +GES+T+ T+ K+ K+ G+ V +DEP+ ++ETDKVT++V SP  G +  +IAKEG+ 
Sbjct: 7   VPTLGESVTEATIGKWFKKLGEAVAVDEPLVELETDKVTVEVPSPVMGKLTEIIAKEGDI 66

Query: 155 VEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPA--------- 205
           VE  A +  +     G++Q+ S   +A   P   E PS  +Q+P S A P+         
Sbjct: 67  VEVNAVLGFVESGAAGISQSFS--PSATSIP---EAPSELEQSPSSSATPSGTMPPAPSA 121

Query: 206 -----------------------VKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKD-RE 241
                                  +K+          K  TS  +   +S    P ++ RE
Sbjct: 122 AKLMAENNIAKSDISGSGKRGQILKEDVLGALAQGTKASTSVATLTASSSSAAPIQEMRE 181

Query: 242 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 301
            RV MT+LR+ +A RLKD+QNT A+LTTFNEVDM+ +M LR  YKD F +KHGVKLG M 
Sbjct: 182 ERVRMTKLRQTIARRLKDAQNTAAMLTTFNEVDMSAVMDLRKRYKDLFEKKHGVKLGFMG 241

Query: 302 GFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
            F KA   AL+  P VNA IDG DI+Y++Y++   AVGT K
Sbjct: 242 FFTKAVCHALKEFPTVNAEIDGTDIVYKNYVNAGIAVGTDK 282

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bartonella quintana (strain Toulouse) (taxid: 283165)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q90512|ODO2_TAKRU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Fragment) OS=Takifugu rubripes GN=dlst PE=3 SV=1

 Score =  187 bits (476), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 148/257 (57%), Gaps = 16/257 (6%)

Query: 89  DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148
           DLV    P   ES+T+G + ++ K  GD V  DE + +IETDK ++ V SP AGVI+ L+
Sbjct: 38  DLVTVKTPAFAESVTEGDV-RWEKAVGDSVTEDEVVCEIETDKTSVQVPSPAAGVIEELL 96

Query: 149 AKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKD 208
             +G  VE G  +  + K             AAA+  P+          P      +   
Sbjct: 97  VPDGGKVEGGTPLFKLRKG------------AAAEAAPSSVTEPVTAAPPPPPPPVSAPT 144

Query: 209 KTPSEPP-PTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALL 267
             PS PP PT      P   P   EP       E RV M+R+R R+A RLK++QNT A+L
Sbjct: 145 AMPSVPPVPTQALQAKPVPAPTLPEPSTLGGRGESRVKMSRMRLRIAQRLKEAQNTCAML 204

Query: 268 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DD 325
           TTFNEVDM+N+ ++R+ +KDAFL+KH +KLG MS FVKAA  AL  QP VNAVIDG  ++
Sbjct: 205 TTFNEVDMSNIQEMRTLHKDAFLKKHSIKLGFMSAFVKAAAHALTDQPAVNAVIDGATNE 264

Query: 326 IIYRDYIDISFAVGTKK 342
           I+YRDY+DIS AV T K
Sbjct: 265 IVYRDYVDISVAVATPK 281

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Takifugu rubripes (taxid: 31033)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q4UKI7|ODO2_RICFE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucB PE=3 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/274 (39%), Positives = 159/274 (58%), Gaps = 25/274 (9%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           V  +VP +GES+T+ T+AK+ K+ GD V+ DE + +IET+KVT++V +P  G I  +   
Sbjct: 3   VKIIVPSLGESVTEATIAKWYKKEGDPVKTDELLLEIETEKVTLEVNAPCDGTIGKISKT 62

Query: 151 EGETVEPGAKIAVISKSGEGVAQAASAEKAAAQP--PPAEEKPSAEKQTPESEAAPAVKD 208
           +G  V  G +I  I++         + E A AQ    P  EKP  +     +  AP+V+ 
Sbjct: 63  DGANVAVGEEIGEINEGAAANTAGTNNESAKAQAVTQPTSEKPVEKPAVVNNILAPSVQK 122

Query: 209 K--------------------TPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTR 248
                                T  +   T   P++  S P  ++     ++R +RV M+R
Sbjct: 123 LVTENKLDPNNIKGTGRDGRITKGDVLETINTPSAATSTPTVNKTN---EERVQRVRMSR 179

Query: 249 LRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV 308
           LRK +A RLKDSQNT A+LTTFNE+DM+ ++ LR+ YK+ F +KH VKLG MS FVKA +
Sbjct: 180 LRKTIAQRLKDSQNTAAILTTFNEIDMSKVIALRNQYKEEFEKKHLVKLGFMSFFVKATI 239

Query: 309 SALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
            AL+  P VNA IDGDD++Y++Y DI  AVGT++
Sbjct: 240 EALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQ 273

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q8GCY1|ODO2_BARVB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1

 Score =  184 bits (468), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 29/277 (10%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           VP +GES+T+ T+ K+ K+ G+ V +DEP+ ++ETDKVT++V SP AG +  +IAKEG+T
Sbjct: 7   VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDT 66

Query: 155 VEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQT----PESEAAPAVKDKT 210
           VE  A +  +      VA++ S+ + +    P+E + S+   T    P +    A  +  
Sbjct: 67  VEVNALLGAVEAGAASVAKSPSSSETSVSAAPSELEQSSSSNTMPPAPSAAKLMAENNIA 126

Query: 211 PSEPPPTAKKPTSPPSKPMASEPQ-------------------------LPPKDRERRVP 245
            S+   + K+        +    Q                            + RE RV 
Sbjct: 127 KSDILGSGKRGQILKEDVLNVLAQGVKTSPPAVSASSSTPVSVSSSAVAPVQEMREERVR 186

Query: 246 MTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVK 305
           MT+LR+ +A RLKD+QNT A+LTTFNEVDM+ +M LR  YKD F +KHGVKLG M  F K
Sbjct: 187 MTKLRQTIARRLKDAQNTAAMLTTFNEVDMSAVMGLRKRYKDLFEKKHGVKLGFMGFFTK 246

Query: 306 AAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           A   AL+  P VNA IDG DIIY++Y++   AVGT K
Sbjct: 247 AVCHALKELPAVNAEIDGTDIIYKNYVNAGIAVGTDK 283

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bartonella vinsonii subsp. berkhofii (taxid: 40933)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q869Y7|ODO2_DICDI Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1

 Score =  181 bits (459), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/256 (44%), Positives = 151/256 (58%), Gaps = 15/256 (5%)

Query: 83  FSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAG 142
           F S + D+V  V P MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G
Sbjct: 67  FYSSANDVVIKV-PSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSG 125

Query: 143 VIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEA 202
            I  L AKEGE V  G  +  I+K           E AAA  P  E   +AE     +  
Sbjct: 126 TIVELFAKEGENVTVGNDLYKIAK----------GEVAAA--PKVEAPKAAEAPKAAAPT 173

Query: 203 APAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQN 262
                 +TP   P  A K  +P   P ++         E RV MTR+R+R A RLKDSQN
Sbjct: 174 PAPKAAETPKAAP--APKSEAPTPAPKSTTTTTSTGPSETRVKMTRIRQRTAQRLKDSQN 231

Query: 263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID 322
           T A+LTTFNE+DM+ LM +R  YKD F +KHGVK G MS FVKA+  AL+ QP+VNA ++
Sbjct: 232 TAAMLTTFNELDMSALMNMRKTYKDEFEKKHGVKFGFMSAFVKASTIALKEQPIVNASVE 291

Query: 323 GDDIIYRDYIDISFAV 338
            +DI+Y + ++I+ AV
Sbjct: 292 ENDIVYHNNVNINVAV 307

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|P19262|ODO2_YEAST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KGD2 PE=1 SV=2

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/262 (42%), Positives = 149/262 (56%), Gaps = 17/262 (6%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           VP M ES+T+G+L ++ K  GD ++ DE +A IETDK+ I+V SP +G +  L  K  +T
Sbjct: 78  VPPMAESLTEGSLKEYTKNVGDFIKEDELLATIETDKIDIEVNSPVSGTVTKLNFKPEDT 137

Query: 155 VEPGAKIAVIS-------KSGEG----VAQAASAEKAAAQPPPAEEKPSAEKQTPESEAA 203
           V  G ++A +         SGE       QA  ++  AA+   +EE  S ++  P+ EAA
Sbjct: 138 VTVGEELAQVEPGEAPAEGSGESKPEPTEQAEPSQGVAARENSSEETASKKEAAPKKEAA 197

Query: 204 P---AVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDS 260
           P     + K   +P  T  K   PP   +AS    P    E RV M R+R R+A RLK+S
Sbjct: 198 PKKEVTEPKKADQPKKTVSKAQEPP---VASNSFTPFPRTETRVKMNRMRLRIAERLKES 254

Query: 261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320
           QNT A LTTFNEVDM+ LM++R  YKD  ++K G K G M  F KA   A +  P VN  
Sbjct: 255 QNTAASLTTFNEVDMSALMEMRKLYKDEIIKKTGTKFGFMGLFSKACTLAAKDIPAVNGA 314

Query: 321 IDGDDIIYRDYIDISFAVGTKK 342
           I+GD I+YRDY DIS AV T K
Sbjct: 315 IEGDQIVYRDYTDISVAVATPK 336

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
118489496	474	unknown [Populus trichocarpa x Populus d	0.957	0.706	0.682	1e-117
359483352	473	PREDICTED: dihydrolipoyllysine-residue s	0.948	0.701	0.641	1e-113
302144114	562	unnamed protein product [Vitis vinifera]	0.948	0.590	0.641	1e-113
224116582	467	predicted protein [Populus trichocarpa]	0.942	0.706	0.628	1e-108
356501546	464	PREDICTED: dihydrolipoyllysine-residue s	0.922	0.696	0.624	1e-107
356552986	461	PREDICTED: dihydrolipoyllysine-residue s	0.925	0.702	0.622	1e-107
255578100	469	dihydrolipoamide succinyltransferase com	0.934	0.697	0.592	1e-106
449444056	469	PREDICTED: dihydrolipoyllysine-residue s	0.934	0.697	0.587	1e-103
357445475	453	Dihydrolipoyllysine-residue succinyltran	0.928	0.717	0.583	1e-101
357494607	455	Dihydrolipoyllysine-residue succinyltran	0.925	0.712	0.569	3e-99

>gi|118489496|gb|ABK96550.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/353 (68%), Positives = 269/353 (76%), Gaps = 18/353 (5%)

Query: 1   MIWGIVRRKITSAQVIGQSVSKI---GPRCHATAQKEAILTCRGFQR-VQRSSYHILSGN 56
           MIWGI+RR + S+Q    SVS+I     R     Q E +   +G +  V   SY    G+
Sbjct: 1   MIWGIIRRNLASSQ----SVSRIKHPAIRPRGYGQNELLSNGKGCRHAVGSFSYCTSLGS 56

Query: 57  YVC----STPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLK 112
             C    + PR E+  +++   FI  RSR FSSD+GDLVDAVVPFMGESITDGTLAKFLK
Sbjct: 57  QCCRAYSNKPRREITAMLRPEYFIPLRSRSFSSDTGDLVDAVVPFMGESITDGTLAKFLK 116

Query: 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVA 172
            PGDRVE+DEPIAQIETDKVTIDVASP+AG IQ L+AKEGETVEPG KIAVISKSGEGV 
Sbjct: 117 NPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQQLVAKEGETVEPGTKIAVISKSGEGVP 176

Query: 173 QAA--SAEKAAAQPPPAEEKPSAEKQTPESEAAPAV-KDKTPSEPPPTAKKPTSPPSKPM 229
           QAA  S EK A+QPPP  EK S  K T ++E +    K+KT   P P A+   +P S P 
Sbjct: 177 QAAPPSQEKTASQPPPPAEKESIGKGTTKTETSSLKGKEKTLFPPQPAAR---APSSPPK 233

Query: 230 ASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAF 289
            SEPQLPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSDYKDAF
Sbjct: 234 PSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAF 293

Query: 290 LEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           +EKHGVK G MSGFVKAAVSALQ+QPVVNAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 294 VEKHGVKFGFMSGFVKAAVSALQYQPVVNAVIDGDDIIYRDYIDISIAVGTPK 346

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483352|ref|XP_002266593.2| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/354 (64%), Positives = 261/354 (73%), Gaps = 22/354 (6%)

Query: 2   IWGIVRRKITS----AQVIGQSVSKIGP------RCHATAQKEAILTCRGFQRVQRSSYH 51
           +W IVRRK+ S    A V+GQS+SKI P      R + T  KEA+L   G + ++   ++
Sbjct: 1   MWAIVRRKVASGSSAASVLGQSLSKIRPAAASVPRGYTTTAKEALLLGGGSKIIRNVGHY 60

Query: 52  ILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFL 111
              G+ V S P  EV   +Q  S I  + R FSSD GDLVDAVVPFMGESI+DGTLAKFL
Sbjct: 61  KYLGSLVSSKPVREVTSFLQIDSPIQVQHRPFSSDKGDLVDAVVPFMGESISDGTLAKFL 120

Query: 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGV 171
           K+PGD VE+DEPIAQIETDKVTIDVASP+AGV+Q  +AKEG+ VEPG KIAVISKSGEGV
Sbjct: 121 KKPGDHVEVDEPIAQIETDKVTIDVASPEAGVVQKFVAKEGDVVEPGTKIAVISKSGEGV 180

Query: 172 AQAASAEK--AAAQPPPA-EEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKP 228
              A +EK  + A P P+  EK + +K  P+SE  P  +      PPP     T      
Sbjct: 181 THVAPSEKTPSKASPEPSPTEKEAVDKPKPKSETPPPKEKPKAPAPPPPRPSAT------ 234

Query: 229 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDA 288
              EP LPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSDYKDA
Sbjct: 235 ---EPVLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDA 291

Query: 289 FLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           FLEKHGVKLGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 292 FLEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPK 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144114|emb|CBI23219.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/354 (64%), Positives = 261/354 (73%), Gaps = 22/354 (6%)

Query: 2   IWGIVRRKITS----AQVIGQSVSKIGP------RCHATAQKEAILTCRGFQRVQRSSYH 51
           +W IVRRK+ S    A V+GQS+SKI P      R + T  KEA+L   G + ++   ++
Sbjct: 90  MWAIVRRKVASGSSAASVLGQSLSKIRPAAASVPRGYTTTAKEALLLGGGSKIIRNVGHY 149

Query: 52  ILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFL 111
              G+ V S P  EV   +Q  S I  + R FSSD GDLVDAVVPFMGESI+DGTLAKFL
Sbjct: 150 KYLGSLVSSKPVREVTSFLQIDSPIQVQHRPFSSDKGDLVDAVVPFMGESISDGTLAKFL 209

Query: 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGV 171
           K+PGD VE+DEPIAQIETDKVTIDVASP+AGV+Q  +AKEG+ VEPG KIAVISKSGEGV
Sbjct: 210 KKPGDHVEVDEPIAQIETDKVTIDVASPEAGVVQKFVAKEGDVVEPGTKIAVISKSGEGV 269

Query: 172 AQAASAEK--AAAQPPPA-EEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKP 228
              A +EK  + A P P+  EK + +K  P+SE  P  +      PPP     T      
Sbjct: 270 THVAPSEKTPSKASPEPSPTEKEAVDKPKPKSETPPPKEKPKAPAPPPPRPSAT------ 323

Query: 229 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDA 288
              EP LPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSDYKDA
Sbjct: 324 ---EPVLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDA 380

Query: 289 FLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           FLEKHGVKLGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 381 FLEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPK 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116582|ref|XP_002317337.1| predicted protein [Populus trichocarpa] gi|222860402|gb|EEE97949.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/350 (62%), Positives = 259/350 (74%), Gaps = 20/350 (5%)

Query: 2   IWGIVRRKITSAQ------VIGQSVSKIGPRCHATAQ--KEAILTCRGFQRVQR-SSYHI 52
           + G++RR++ S        ++ QS+  I P   +T++  +E ++  RGF  V++ S    
Sbjct: 1   MLGVIRRRVASGGSSSSSSILKQSLQTIRPVSSSTSRVSEEILIHPRGFGHVRKFSCLAP 60

Query: 53  LSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLK 112
           L G  + S    E +  ++  +     SR FSSDSGDLVDAVVPFMGESITDGTLAKFLK
Sbjct: 61  LRGRAISSRTMREGVSNMELTASKLILSRPFSSDSGDLVDAVVPFMGESITDGTLAKFLK 120

Query: 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVA 172
            PGDRVE+DEPIAQIETDKVTIDVASP+AGVI+ LIAKEG+TVEPG KIAVISKSGEGVA
Sbjct: 121 NPGDRVEVDEPIAQIETDKVTIDVASPEAGVIKELIAKEGDTVEPGTKIAVISKSGEGVA 180

Query: 173 QAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASE 232
            AA +E  + Q  P  E    EK  P+ EA+P         PPP  +          A+E
Sbjct: 181 HAAPSENTSKQSAP--EMKDEEKIKPKVEASPVPVKPKTPAPPPPKRS---------ATE 229

Query: 233 PQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEK 292
           PQLPPK++ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS+YKDAF+EK
Sbjct: 230 PQLPPKEKERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSEYKDAFVEK 289

Query: 293 HGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           HGVKLGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 290 HGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPK 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501546|ref|XP_003519585.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/354 (62%), Positives = 260/354 (73%), Gaps = 31/354 (8%)

Query: 2   IWGIVRRKITSAQ----VIGQSVSKI--GP----RCHATAQKEAILTCRGFQRVQRSSYH 51
           ++G+VRR++ S      ++GQS  KI  GP    R  +  +KE +    G   VQ  S H
Sbjct: 1   MFGVVRRRVASGSPSPWLLGQSAQKIRSGPSVSARASSIVEKEIVFRSGGCGFVQNFS-H 59

Query: 52  ILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFL 111
           I  G+++ S P   VI      + + +  RLFSS+SGD VD VVP + ESI+DGTLA+FL
Sbjct: 60  ITPGSWINSKPMRVVI---HPEATVRTWGRLFSSESGDTVDVVVPPLAESISDGTLAQFL 116

Query: 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGV 171
           K+PGDRV  DEPIAQIETDKVTIDV+SP++GVI  L+A EG+TVEPG KIA+IS+S +  
Sbjct: 117 KRPGDRVNADEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGNKIAIISRSADAT 176

Query: 172 AQAAS---AEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKP 228
             A S   +EKAA QP    +K S EK+ P+ E APA K+K P  PP T K PT      
Sbjct: 177 HVAPSETISEKAAPQP---TQKVSEEKKAPKVETAPA-KEK-PKTPPATLKSPT------ 225

Query: 229 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDA 288
              EPQLPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSDYKDA
Sbjct: 226 ---EPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDA 282

Query: 289 FLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           F+EKHGVKLGLMSGFVKAAV+ALQHQP+VNAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 283 FVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPK 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552986|ref|XP_003544840.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/350 (62%), Positives = 255/350 (72%), Gaps = 26/350 (7%)

Query: 2   IWGIVRRKITSAQ----VIGQSVSKI--GPRCHATAQKEAILTCRGFQRVQRSSYHILSG 55
           ++G+VRR++ S      ++GQSV  I  GP   A A   AI    G     R+  HI  G
Sbjct: 1   MFGVVRRRVASGSPSPWLLGQSVQNIRSGPSVSARASSIAIAFPSGGCGFVRNFSHITLG 60

Query: 56  NYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPG 115
           +++ S P   VI      + + +  RLFSS+SGD VD VVP + ESI+DGTLA+FLK+PG
Sbjct: 61  SWINSKPMRVVI---HPEATVQTLGRLFSSESGDTVDVVVPPLAESISDGTLAQFLKRPG 117

Query: 116 DRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAA 175
           DRV  DEPIAQIETDKVTIDV+SP++GVI  L+A EG+TVEPG KIA+IS+S +    A 
Sbjct: 118 DRVNADEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGNKIAIISRSADATHVAP 177

Query: 176 S---AEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASE 232
           S   +EK A QP    +K S EK+ P+ E APA K+K P  PP   K PT         E
Sbjct: 178 SETTSEKGAPQP---TQKVSEEKKAPKVETAPA-KEK-PKAPPAILKSPT---------E 223

Query: 233 PQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEK 292
           PQLPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSDYKDAF+EK
Sbjct: 224 PQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEK 283

Query: 293 HGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           HGVKLGLMSGFVKAAV+ALQHQP+VNAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 284 HGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTSK 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578100|ref|XP_002529920.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis] gi|223530597|gb|EEF32474.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 250/356 (70%), Gaps = 29/356 (8%)

Query: 1   MIWGIVRRKITSAQVIGQSVSKI---------GPRCHATAQKEAILTCRGFQRVQRSSYH 51
           M+ G++RR++T+       + +           PR  +  +KE +L  RG       S  
Sbjct: 1   MMLGVLRRRVTTGASSSSVLRRSLQTTKPAASAPRVSSLPEKEILLNLRGLGSAGNFS-- 58

Query: 52  ILSGNYVCSTPRSEVIELIQKGSFIGSRS---RLFSSDSGDLVDAVVPFMGESITDGTLA 108
                ++ S        +    S + ++    R FSSDSGDLVDAVVPFMGESITDGTLA
Sbjct: 59  ----TFISSGCSVSSRSIRDASSMMATKQVWIRPFSSDSGDLVDAVVPFMGESITDGTLA 114

Query: 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168
           KFLK PGDRVE+DEPIAQIETDKVTIDVASP+AGVI+  +AKEGETVEPG K+A+ISKSG
Sbjct: 115 KFLKNPGDRVEVDEPIAQIETDKVTIDVASPEAGVIKEFVAKEGETVEPGTKVAIISKSG 174

Query: 169 EGVAQAASAEKAAAQPPPAEEKP--SAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPS 226
           EGVA  A +EK   +  P    P  + EKQ P+ + AP  +      PPP  +       
Sbjct: 175 EGVAHVAPSEKVPEKVSPKASAPEKTEEKQKPKVDTAPVTEKPKTPAPPPPKRS------ 228

Query: 227 KPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYK 286
              A+EPQLPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRS+YK
Sbjct: 229 ---ATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYK 285

Query: 287 DAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           DAF+EKHGVKLGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 286 DAFVEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPK 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444056|ref|XP_004139791.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus] gi|449517675|ref|XP_004165870.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/356 (58%), Positives = 239/356 (67%), Gaps = 29/356 (8%)

Query: 1   MIWGIVRRKITSA---QVIGQSVSKIGP-----RCHATAQKEAILTCRGFQRVQRSSYHI 52
           M +G+VRR+I S        Q +  I P     R  + A+KE +  CR F  V+  S+  
Sbjct: 1   MSFGVVRRRIASGGSNLFSAQYLRGIRPSISAGRVRSVAEKEILHQCRSFGHVRNISHLF 60

Query: 53  LSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLK 112
             G    S         +Q+   I    R FSSD+GDL+D VVP + ESITDGTLAKFLK
Sbjct: 61  SPGGLASSQSLRVAFSSMQQRPMIQMNGRNFSSDNGDLLDVVVPPLAESITDGTLAKFLK 120

Query: 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVA 172
            PGDRVE+DE IAQIETDKVTIDV SP AG+IQ  +AKEG+TVEPG K+A+ISK+GEGV 
Sbjct: 121 NPGDRVELDEAIAQIETDKVTIDVTSPGAGIIQKFVAKEGDTVEPGTKVAIISKTGEGVT 180

Query: 173 QAASAEKAAAQPPPAE------EKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPS 226
             A +EK + Q  P        EKP AE    E     A     P               
Sbjct: 181 HVAPSEKTSEQAAPQAAPAEKIEKPKAETTVSEKPKPKAPSPPPPKRS------------ 228

Query: 227 KPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYK 286
              A+EPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSDYK
Sbjct: 229 ---ATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYK 285

Query: 287 DAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           DAF+EKHGVKLGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 286 DAFVEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPK 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445475|ref|XP_003593015.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|355482063|gb|AES63266.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|388493976|gb|AFK35054.1| unknown [Medicago truncatula]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/341 (58%), Positives = 248/341 (72%), Gaps = 16/341 (4%)

Query: 2   IWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCST 61
           ++G+VRR++ S+ ++   +     R     +KE  L+  G   + R+  HI  G ++ S 
Sbjct: 1   MFGVVRRRVASSSLL--KIRSGTTRVSPVLEKEIALSSGGCGNI-RNFCHITPGRWISSK 57

Query: 62  PRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMD 121
           P   + ++  + + + +  R FSSD+GD VD VVP + ESI DGTLAKFLK+PGDRV +D
Sbjct: 58  P---IRDIFHQEASVQTWKRSFSSDNGDNVDVVVPPLAESIEDGTLAKFLKRPGDRVNVD 114

Query: 122 EPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAA 181
           EPIAQIETDKVTIDV SP++GVI  L+A EG+TV PG KIA+IS+S +     A +E A 
Sbjct: 115 EPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSADATTHVAPSETAP 174

Query: 182 AQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRE 241
            +P P   KP+ +   PE +  P V+  T  +P    K PT P S P  +EPQLPPK+RE
Sbjct: 175 EKPAP---KPTPKASEPEEKKTPKVETTTTEKP----KAPT-PQSSP--TEPQLPPKERE 224

Query: 242 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 301
           RRVPMTRLRKRVA RLKDSQNTFA+LTTFNEVDMTNLMKLR+DYKDAF+EKHGVKLGLMS
Sbjct: 225 RRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMS 284

Query: 302 GFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           GF+KAAV+ALQ+QP+VNAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 285 GFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTPK 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494607|ref|XP_003617592.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|355518927|gb|AET00551.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/344 (56%), Positives = 247/344 (71%), Gaps = 20/344 (5%)

Query: 2   IWGIVRRKITSAQVIGQSVSKI---GPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYV 58
           ++G+VRR++        S+ KI     R  +  +KE  L+  G   + R+  HI  G ++
Sbjct: 1   MFGVVRRRVAYGST--SSLLKIRSGTTRVSSVLEKEVALSSGGCGNI-RNFCHITPGRWI 57

Query: 59  CSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRV 118
            S P   + ++  + + I +  R FSSD+GD VD VVP + ESI DGTLAKFLK+PGD+V
Sbjct: 58  NSKP---IRDIFHQEASIQTWKRSFSSDNGDNVDVVVPPLAESIEDGTLAKFLKRPGDKV 114

Query: 119 EMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAE 178
            +DEPIAQIETDKVTIDV SP++GVI  L+A EG+TV PG KIA+IS+S +     A +E
Sbjct: 115 NVDEPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSADATTHVAPSE 174

Query: 179 KAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPK 238
            +  +P P +   ++E   PE + AP V+         T +KP +P  +   +EPQLPPK
Sbjct: 175 TSPQKPAPKQTPKASE---PEEKKAPKVET--------TTEKPKTPAPQSSPTEPQLPPK 223

Query: 239 DRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLG 298
           +RERRVPMTRLRKRVA RLKDSQNTFA+LTTFNEVDMTNLMKLR+DYKDAF+EKHGVKLG
Sbjct: 224 ERERRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLG 283

Query: 299 LMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           LMSGF+KAAV+ALQ+QP+VNAVIDGDDIIYRDYIDIS AVGT K
Sbjct: 284 LMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTPK 327

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2161670	464	AT5G55070 [Arabidopsis thalian	0.908	0.685	0.542	2.5e-74
TAIR|locus:2116432	464	AT4G26910 [Arabidopsis thalian	0.725	0.547	0.603	2e-72
DICTYBASE|DDB_G0275029	439	odhB "dihydrolipoamide S-succi	0.634	0.505	0.421	4.3e-38
TIGR_CMR|SPO_0343	398	SPO_0343 "2-oxoglutarate dehyd	0.645	0.567	0.388	8e-37
MGI|MGI:1926170	454	Dlst "dihydrolipoamide S-succi	0.228	0.176	0.637	3e-36
UNIPROTKB|F1NQH8	411	DLST "Uncharacterized protein"	0.228	0.194	0.612	5.8e-36
WB|WBGene00020950	463	dlst-1 [Caenorhabditis elegans	0.291	0.220	0.529	6.8e-36
RGD|1359615	454	Dlst "dihydrolipoamide S-succi	0.228	0.176	0.637	8e-36
UNIPROTKB|G3V6P2	454	Dlst "Dihydrolipoyllysine-resi	0.228	0.176	0.637	8e-36
UNIPROTKB|P11179	455	DLST "Dihydrolipoyllysine-resi	0.228	0.175	0.625	1.1e-35

TAIR|locus:2161670 AT5G55070 [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 185/341 (54%), Positives = 213/341 (62%)

Query:     8 RKITSAQVIGQSVSK----IGPRCHATAQKEAILTCRGFQRVQRSSYHILS--GNYVCST 61
             R  +SA  +G+S+      +  + H+ +  E ++  RG       S+H  S  G   CS 
Sbjct:    13 RGSSSASGLGKSLQSSRVAVSAQFHSVSATETLVP-RGNHA---HSFHHRSCPGCPDCS- 67

Query:    62 PRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMD 121
              R+ +I   Q G+ +    R FSSDSGD+V+AVVP MGESITDGTLA FLK+PGDRVE D
Sbjct:    68 -RT-IINGYQ-GTALQRWVRPFSSDSGDVVEAVVPHMGESITDGTLAAFLKKPGDRVEAD 124

Query:   122 EPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVXXXXXXXXXX 181
             E IAQIETDKVTID+ASP +GVIQ  + KEG+TVEPG K+A IS S + V          
Sbjct:   125 EAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGNKVARISTSADAVSHVAPSEKAP 184

Query:   182 XXXXXXXXXXXXXXXTPESEAAPAVKDXXXXXXXXXXXXXXXXXXXXMASEPQLPPKDRE 241
                            +P +E  P V+                      A EPQLPPKDRE
Sbjct:   185 EKPAPKP--------SPPAEK-PKVESTKVAEKPKAPSPPPPPPSKQSAKEPQLPPKDRE 235

Query:   242 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 301
             RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS YKDAFLEKHGVKLGLMS
Sbjct:   236 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKLGLMS 295

Query:   302 GFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKK 342
             GF+KAAVSALQHQPVVNAV              S AVGT K
Sbjct:   296 GFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSK 336

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA;ISS

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2116432 AT4G26910 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 158/262 (60%), Positives = 176/262 (67%)

Query:    81 RLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQ 140
             R FS+++GD V+AVVP MGESITDGTLA FLK+PG+RV+ DE IAQIETDKVTID+ASP 
Sbjct:    83 RPFSAETGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPA 142

Query:   141 AGVIQNLIAKEGETVEPGAKIAVISKSGEGVXXXXXXXXXXXXXXXXXXXXXXXXXTPES 200
             +GVIQ  +  EG+TVEPG K+A+ISKS +                            P  
Sbjct:   143 SGVIQEFLVNEGDTVEPGTKVAIISKSEDTASQVTPSQKIPETTDTKPSPPAEDKQKPRV 202

Query:   201 EAAPAVKDXXXXXXXXXXXXXXXXXXXXMASEPQLPPKDRERRVPMTRLRKRVATRLKDS 260
             E+AP  +                      A EPQLPPK+RERRVPMTRLRKRVATRLKDS
Sbjct:   203 ESAPVAEKPKAPSSPPPPKQS--------AKEPQLPPKERERRVPMTRLRKRVATRLKDS 254

Query:   261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320
             QNTFALLTTFNEVDMTNLMKLRS YKDAF EKHGVKLGLMSGF+KAAVSALQHQPVVNAV
Sbjct:   255 QNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAV 314

Query:   321 XXXXXXXXXXXXXXSFAVGTKK 342
                           S AVGT K
Sbjct:   315 IDGDDIIYRDYVDISIAVGTSK 336

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA;ISS

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

DICTYBASE|DDB_G0275029 odhB "dihydrolipoamide S-succinyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 100/237 (42%), Positives = 127/237 (53%)

Query:    83 FSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAG 142
             F S + D+V   VP MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G
Sbjct:    67 FYSSANDVV-IKVPSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSG 125

Query:   143 VIQNLIAKEGETVEPGAKIAVISKSGEGVXXXXXXXXXXXXXXXXXXXXXXXXXTPESEA 202
              I  L AKEGE V  G  +  I+K GE                               +A
Sbjct:   126 TIVELFAKEGENVTVGNDLYKIAK-GEVAAAPKVEAPKAAEAPKAAAPTPAPKAAETPKA 184

Query:   203 APAVKDXXXXXXXXXXXXXXXXXXXXMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQN 262
             APA K                      ++ P       E RV MTR+R+R A RLKDSQN
Sbjct:   185 APAPKSEAPTPAPKSTTTTT-------STGPS------ETRVKMTRIRQRTAQRLKDSQN 231

Query:   263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319
             T A+LTTFNE+DM+ LM +R  YKD F +KHGVK G MS FVKA+  AL+ QP+VNA
Sbjct:   232 TAAMLTTFNELDMSALMNMRKTYKDEFEKKHGVKFGFMSAFVKASTIALKEQPIVNA 288

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|SPO_0343 SPO_0343 "2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 96/247 (38%), Positives = 133/247 (53%)

Query:    94 VVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153
             +VP +GES+T+ T++ + K+ GD V  DE + ++ETDKV+++V +P +GV+  ++A EG 
Sbjct:     1 MVPTLGESVTEATVSTWFKKVGDSVAQDEMLCELETDKVSVEVPAPASGVLTEIVAAEGA 60

Query:   154 TVEPGAKIAVISKSGEGVXXXXXXXXXXXXXXXXXXXXXXXXXTPE---SEAA--PAV-- 206
             TV   AK+AVIS S  G                          + E   +EA   PA   
Sbjct:    61 TVNASAKLAVISGSASGASPAPAAPAAAVTPAVATGKDIANAPSAEKAMAEAGITPAQVT 120

Query:   207 ----------KDXXXXXXXXXXXXXXXXXXXXMASEPQLPP--KD--RERRVPMTRLRKR 252
                       +D                     A+ P+ P   +D  RE RV MTRLR+ 
Sbjct:   121 GTGRDGRIMKEDVTAAVAAAAAAPAPAAAAPAPAAAPRAPALAEDAAREERVRMTRLRQT 180

Query:   253 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQ 312
             +A RLKD+QNT A+LTT+NEVDMT +M LR+ YKDAF +KHGV++G MS F KA   AL+
Sbjct:   181 IARRLKDAQNTAAILTTYNEVDMTEVMALRNTYKDAFEKKHGVRMGFMSFFTKACCHALK 240

Query:   313 HQPVVNA 319
               P VNA
Sbjct:   241 EVPEVNA 247

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=ISS

MGI|MGI:1926170 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
 Identities = 51/80 (63%), Positives = 66/80 (82%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT A+LTTFNEVDM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   223 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHKDAFLKKHNLKLGFM 282

Query:   301 SGFVKAAVSALQHQPVVNAV 320
             S FVKA+  ALQ QPVVNAV
Sbjct:   283 SAFVKASAFALQEQPVVNAV 302

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

UNIPROTKB|F1NQH8 DLST "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 5.8e-36, Sum P(2) = 5.8e-36
 Identities = 49/80 (61%), Positives = 66/80 (82%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
             E RV M R+R+R+A RLK++QNT A+LTTFNE+DM+N+ ++R+ +KD FL+KH +KLG M
Sbjct:   230 EHRVKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIREMRAVHKDPFLKKHNLKLGFM 289

Query:   301 SGFVKAAVSALQHQPVVNAV 320
             S FVKA+  ALQ QP+VNAV
Sbjct:   290 SAFVKASAFALQDQPIVNAV 309

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00020950 dlst-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 260 (96.6 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
 Identities = 54/102 (52%), Positives = 69/102 (67%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
             E RV   R+R R+A RLKD+QNT+A+LTTFNE+DM++L+++R  Y+  F+ KHGVKLG+M
Sbjct:   234 EVRVKANRMRMRIAQRLKDAQNTYAMLTTFNEIDMSSLIEMRKTYQKDFVAKHGVKLGMM 293

Query:   301 SGFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKK 342
             S FV+AA  ALQ  PVVNAV              S AV T K
Sbjct:   294 SPFVRAAAYALQESPVVNAVLDENEIVYRHFVDISVAVATPK 335

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

RGD|1359615 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
 Identities = 51/80 (63%), Positives = 66/80 (82%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT A+LTTFNEVDM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   223 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHKDAFLKKHNLKLGFM 282

Query:   301 SGFVKAAVSALQHQPVVNAV 320
             S FVKA+  ALQ QPVVNAV
Sbjct:   283 SAFVKASAFALQEQPVVNAV 302

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IC

GO:0006103 "2-oxoglutarate metabolic process" evidence=IDA

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO;IDA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

UNIPROTKB|G3V6P2 Dlst "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
 Identities = 51/80 (63%), Positives = 66/80 (82%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT A+LTTFNEVDM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   223 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHKDAFLKKHNLKLGFM 282

Query:   301 SGFVKAAVSALQHQPVVNAV 320
             S FVKA+  ALQ QPVVNAV
Sbjct:   283 SAFVKASAFALQEQPVVNAV 302

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

UNIPROTKB|P11179 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 50/80 (62%), Positives = 66/80 (82%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT A+LTTFNE+DM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   224 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKDAFLKKHNLKLGFM 283

Query:   301 SGFVKAAVSALQHQPVVNAV 320
             S FVKA+  ALQ QPVVNAV
Sbjct:   284 SAFVKASAFALQEQPVVNAV 303

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.921
3rd Layer	2.3.1.61	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	1e-123
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-100
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	1e-99
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	2e-85
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-61
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	5e-56
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-43
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	4e-36
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-30
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	8e-28
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	3e-26
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-24
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	2e-21
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	2e-21
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	6e-21
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	9e-19
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	5e-16
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-15
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	1e-14
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	1e-14
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	1e-14
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	3e-14
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	5e-13
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	9e-10
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	1e-09
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	2e-09
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	9e-09
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	1e-06
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	4e-05
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	6e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	0.001
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
cd06848	96	cd06848, GCS_H, Glycine cleavage H-protein	0.003
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.004

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  361 bits (928), Expect = e-123
 Identities = 189/263 (71%), Positives = 211/263 (80%), Gaps = 10/263 (3%)

Query: 81  RLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQ 140
           R FSS+SGD V+AVVP MGESITDGTLA FLK+PG+RV+ DE IAQIETDKVTID+ASP 
Sbjct: 82  RPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPA 141

Query: 141 AGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPES 200
           +GVIQ  + KEG+TVEPG K+A+ISKS +  +Q   ++K      P    P+ +KQ P+ 
Sbjct: 142 SGVIQEFLVKEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKV 201

Query: 201 EAAP-AVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKD 259
           E+AP A K K PS PPP          K  A EPQLPPK+RERRVPMTRLRKRVATRLKD
Sbjct: 202 ESAPVAEKPKAPSSPPP---------PKQSAKEPQLPPKERERRVPMTRLRKRVATRLKD 252

Query: 260 SQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319
           SQNTFALLTTFNEVDMTNLMKLRS YKDAF EKHGVKLGLMSGF+KAAVSALQHQPVVNA
Sbjct: 253 SQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNA 312

Query: 320 VIDGDDIIYRDYIDISFAVGTKK 342
           VIDGDDIIYRDY+DIS AVGT K
Sbjct: 313 VIDGDDIIYRDYVDISIAVGTSK 335

Length = 463

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  301 bits (773), Expect = e-100
 Identities = 127/262 (48%), Positives = 164/262 (62%), Gaps = 6/262 (2%)

Query: 79  RSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVAS 138
            S  FS     +    VP MG+SI++GT+ ++ K+ GD V+ DE I  IETDKV++D+ +
Sbjct: 33  CSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRA 92

Query: 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTP 198
           P +GVI  + A+EG+TVE GA ++ I   G   A A +A  AA       EKP A   TP
Sbjct: 93  PASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTP 152

Query: 199 ESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLK 258
           E  AA          PP  AK P   P+      P      RE RVPM+R+R+R+A RLK
Sbjct: 153 EPPAASK------PTPPAAAKPPEPAPAAKPPPTPVARADPRETRVPMSRMRQRIAERLK 206

Query: 259 DSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 318
            SQNT A+LTTFNE DM+ LM+LR +YKD F +KHGVKLG MS FVKA+  AL+  P+VN
Sbjct: 207 ASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVN 266

Query: 319 AVIDGDDIIYRDYIDISFAVGT 340
           A IDGD+I+YR+Y+DIS AV T
Sbjct: 267 AYIDGDEIVYRNYVDISVAVAT 288

Length = 418

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  300 bits (770), Expect = 1e-99
 Identities = 121/277 (43%), Positives = 160/277 (57%), Gaps = 25/277 (9%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           V+  VP + ES+T+ T+A + K+PGD V+ DE + +IETDKV ++V +P AGV+  ++A+
Sbjct: 3   VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAE 62

Query: 151 EGETVEPGAKIAVISKSGEGVA-QAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAV--- 206
           EG+TV  G  +  I +     A  AA+A  AAA   PA+ + +A  +      +PA    
Sbjct: 63  EGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKL 122

Query: 207 ---KDKTPSEPPPT------------------AKKPTSPPSKPMASEPQLPPKDRERRVP 245
                   S    T                  A  P +P +   A+ P       E RVP
Sbjct: 123 AAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVP 182

Query: 246 MTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVK 305
           MTRLRK +A RL ++QNT A+LTTFNEVDMT +M LR  YKDAF +KHGVKLG MS FVK
Sbjct: 183 MTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVK 242

Query: 306 AAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           A V AL+  P VNA IDGDDI+Y +Y DI  AVGT +
Sbjct: 243 AVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPR 279

Length = 407

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  263 bits (673), Expect = 2e-85
 Identities = 115/281 (40%), Positives = 160/281 (56%), Gaps = 35/281 (12%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           ++  VP + ESIT+GT+A++ K+ GD V+ DE I +IETDKV ++V SP  GV+Q ++ K
Sbjct: 1   IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60

Query: 151 EGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT 210
           EG+TVE G  +A++ +  +      +     A+    +E+  A        AA      +
Sbjct: 61  EGDTVESGQVLAILEEGND------ATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLS 114

Query: 211 P-------------SEPPPT--------------AKKPTSPPSKPMASEPQLPPKD--RE 241
           P             S  P T               + P S      A+  + P      E
Sbjct: 115 PAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRPE 174

Query: 242 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 301
            RV MTRLR+R+A RLK++QN+ A+LTTFNEVDM+ +M+LR  YK+ F +KHGVKLG MS
Sbjct: 175 ERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMS 234

Query: 302 GFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
            FVKA V+AL+  P VNA IDGDDI+Y+DY DIS AV T +
Sbjct: 235 FFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDR 275

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  202 bits (515), Expect = 1e-61
 Identities = 100/274 (36%), Positives = 143/274 (52%), Gaps = 33/274 (12%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           +P +GE++T+GT+ ++LK+ GD+V+  + + ++ETDK T++V +P AGV+  ++ +EG+T
Sbjct: 7   MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT 66

Query: 155 VEPGAKIAVISKSGEGVAQAASAEKA-AAQPPPAEEKPSAEKQTPESEAAPAV------- 206
           V  GA IA I + G     AA A    AA  P +    +A        A+PAV       
Sbjct: 67  VPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREA 126

Query: 207 ------------------KDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTR 248
                             KD   +     A      P+    +         E RVPM+R
Sbjct: 127 GIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGE----EERVPMSR 182

Query: 249 LRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV 308
           +RK +A R+ +S+ T   LT FNEVDMT LM LR   K+ F +K GVKL  +S  VKA V
Sbjct: 183 IRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKAVV 241

Query: 309 SALQHQPVVNAVIDGDD--IIYRDYIDISFAVGT 340
            AL+  P VNA IDGD   I+Y  Y++I  AV T
Sbjct: 242 KALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDT 275

Length = 404

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  187 bits (478), Expect = 5e-56
 Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 40/281 (14%)

Query: 96  PFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV 155
           P +GE +T+G + ++L + GD V+  +P+A++ETDK T+++ SP AG +  L+ +EG+ V
Sbjct: 8   PDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVV 67

Query: 156 EPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEP- 214
             G+ IAVI + GE  A AA+     A  P      +A      + AA        +   
Sbjct: 68  PVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKA 127

Query: 215 PPTAKK----------------------------------PTSPPSKPMASEPQLPPKDR 240
            P  +K                                  P +  +   A+ P     + 
Sbjct: 128 SPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEG 187

Query: 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
           E RVP++ +RK +A R+ +S+      T  +EVD+T L+ LR   K       GVKL + 
Sbjct: 188 EERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI-----GVKLTVT 242

Query: 301 SGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK 341
              +KA   AL+  P +NA  D D I+ + Y++I  AV T 
Sbjct: 243 DFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATD 283

Length = 411

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  157 bits (399), Expect = 1e-43
 Identities = 88/311 (28%), Positives = 138/311 (44%), Gaps = 56/311 (18%)

Query: 84  SSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGV 143
           ++  G +V+  VP +GE IT+  + ++L + GD VE D+ +  +ETDK T+++ SP AGV
Sbjct: 113 AAAGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGV 171

Query: 144 IQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAA 203
           ++ +  K G+ V  G+ + VI +       AA+A  AAA    A   P+       + AA
Sbjct: 172 VKEIKVKVGDKVSVGSLLVVI-EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAA 230

Query: 204 ----------------PAV------------------------KD---------KTPSEP 214
                           PAV                        K+          + +  
Sbjct: 231 AAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAA 290

Query: 215 PPTAKKPTSPPSKPMASEPQLPPKDRE--RRVPMTRLRKRVATRLKDSQNTFALLTTFNE 272
              A          +   P++           P++R++K  A  L  S  T   +T F+E
Sbjct: 291 AAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDE 350

Query: 273 VDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRD 330
            D+T+L  LR   K    EK GVKL ++  F+KA V+AL+  PV NA +D  GD++ Y+ 
Sbjct: 351 ADITDLEALRKQLKKEA-EKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKK 409

Query: 331 YIDISFAVGTK 341
           Y +I FAV T 
Sbjct: 410 YFNIGFAVDTP 420

Length = 547

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  137 bits (346), Expect = 4e-36
 Identities = 90/324 (27%), Positives = 135/324 (41%), Gaps = 67/324 (20%)

Query: 84  SSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGV 143
           +  SG+  +  +P +GES+T+GT+  +LK  GD VE+DEP+ ++ TDKV  ++ SP AG 
Sbjct: 120 AGGSGEATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGT 179

Query: 144 IQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAE-------------------KAAAQP 184
           +  + A E +TVE G  +A+I  +    A+ A  E                     AA  
Sbjct: 180 LLEIRAPEDDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPD 239

Query: 185 PPAEEKPSAEKQTPESEA------------------------------------------ 202
           PPA     A+   P + A                                          
Sbjct: 240 PPAPAPAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQD 299

Query: 203 --APAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKD--RERRVPMTRLRKRVATRLK 258
             A A   +             +P +   A++P  P     R     M R+R+  A +  
Sbjct: 300 VLAAAKAAEEARAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTI 359

Query: 259 DSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 318
           +S  T A LT  +EVDMT +  LR+  K+ FLEK+GV L  +  FV+A   AL+  P VN
Sbjct: 360 ESLQTSAQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVN 419

Query: 319 AVI--DGDDIIYRDYIDISFAVGT 340
           A    +  ++ Y D   +  AV T
Sbjct: 420 ASYNAETKEVTYHDVEHVGIAVDT 443

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  122 bits (308), Expect = 1e-30
 Identities = 65/307 (21%), Positives = 117/307 (38%), Gaps = 57/307 (18%)

Query: 87  SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146
           +  + D  VP +G    +  + + + + GD+VE ++ +  +E DK +++V +P AG ++ 
Sbjct: 203 AAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKE 260

Query: 147 LIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAV 206
           +    G+ V+ G+ I       EG A AA+  K  A  P      +       +  A   
Sbjct: 261 IKVNVGDKVKTGSLIMRFEV--EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGK 318

Query: 207 KDKTPSEPPPTA----------------------------------------KKPTSPPS 226
            +   ++    A                                        K+  + P+
Sbjct: 319 SEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPA 378

Query: 227 KPMA--SEPQLPP-------KDRERR-VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMT 276
              A    P L P       K  E   V + R++K     L  +      +T F++ D+T
Sbjct: 379 AAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADIT 438

Query: 277 NLMKLR-SDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI--DGDDIIYRDYID 333
            L   R     +A   K GVK+  +   +KA  +AL+  P  N+ +  DG  +  + Y++
Sbjct: 439 ELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVN 498

Query: 334 ISFAVGT 340
           I  AV T
Sbjct: 499 IGIAVDT 505

Length = 633

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  112 bits (282), Expect = 8e-28
 Identities = 76/303 (25%), Positives = 119/303 (39%), Gaps = 60/303 (19%)

Query: 96  PFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ET 154
           P +  ++T G LAK+LK+ GD+V   + IA+IETDK T++  + + G +  ++  EG + 
Sbjct: 5   PALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKD 64

Query: 155 VEPGAKIAVISKSGEGVAQAAS----AEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT 210
           V     IAV+ +  E VA A         A+  P P+E  P+A    P+   AP  +   
Sbjct: 65  VPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPE 124

Query: 211 PSEPPPTAKK-------------------------------------------------- 220
           PS P P + K                                                  
Sbjct: 125 PSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPAS 184

Query: 221 -PTSPPSKPMASEPQLPPKDRE--RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 277
                 +   A+ P   P        VP++ +RK +A RL +S+ T        E ++  
Sbjct: 185 ANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNVDK 244

Query: 278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFA 337
           L+ LR +      E    KL +    +KA+  AL+  P  N+    + I     +DIS A
Sbjct: 245 LLALRKELNAMASEV--YKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVA 302

Query: 338 VGT 340
           V T
Sbjct: 303 VAT 305

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 99.4 bits (249), Expect = 3e-26
 Identities = 32/71 (45%), Positives = 52/71 (73%)

Query: 94  VVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153
            +P +GES+T+GT+ ++L + GD VE  + +A++ETDK T++V +P AGV+  ++ +EG+
Sbjct: 4   KMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD 63

Query: 154 TVEPGAKIAVI 164
           TV  G  IAVI
Sbjct: 64  TVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  102 bits (258), Expect = 4e-24
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           ++  VP +GE + +  + ++L + GD VE D+P+  +ETDK T+++ SP AGV++ +  K
Sbjct: 3   IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVK 61

Query: 151 EGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPA 205
            G+TV  G  +AVI  +G   A AA A  AA     A     A      + AA  
Sbjct: 62  VGDTVSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAG 116

Length = 547

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score = 90.7 bits (226), Expect = 2e-21
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 257 LKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPV 316
           + +S+ T    T  +EVD+T L+ LR   K+   ++ G+KL  +   VKA   AL+  P 
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKE-GLKLTFLDFLVKAVALALKEFPE 59

Query: 317 VNAVIDGDD-IIYRDYIDISFAVGTKK 342
           +NA  DGD  I+Y+ Y++I  AV T  
Sbjct: 60  LNASWDGDAEIVYKKYVNIGIAVATPD 86

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 73/311 (23%), Positives = 126/311 (40%), Gaps = 62/311 (19%)

Query: 87  SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146
           S  + +  VP +G  I   T+ + L + GD V  D+ +  +E+DK +++V +P +GV+++
Sbjct: 113 SSGVQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKS 171

Query: 147 LIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPP---PAEEKPSAEKQTPESEAA 203
           +  K G++V  G  I  +S    G   A +   A+AQP    PA  +P        ++A 
Sbjct: 172 VKVKVGDSVPTGDLILTLS--VAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQ 229

Query: 204 PAVKDKTPSEPPPTAKKPTSPPSKPMASE------------------------------- 232
                +  ++ P       +P  + +A E                               
Sbjct: 230 APAPQQAGTQNPAKVD-HAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSV 288

Query: 233 ----------------PQLPPKDRE-----RRVPMTRLRKRVATRLKDSQNTFALLTTFN 271
                              P  D         V M+R+RK     L  +      +T F+
Sbjct: 289 RAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFD 348

Query: 272 EVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYR 329
           + D+T +   R     A +EK GVKL ++   +KA  +AL+  P  NA +D  G+ +I +
Sbjct: 349 KADITEMEAFRKQQN-AAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILK 407

Query: 330 DYIDISFAVGT 340
            Y++I  AV T
Sbjct: 408 KYVNIGVAVDT 418

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 93.5 bits (232), Expect = 6e-21
 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 3/114 (2%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           +P +GES+T+GT+  +LK  GD VE DEP+ ++ TDKV  ++ SP AGV+  + A E +T
Sbjct: 7   MPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPEDDT 66

Query: 155 VEPGAKIAVISKSGEGVAQ---AASAEKAAAQPPPAEEKPSAEKQTPESEAAPA 205
           VE G  +A+I + GE  ++   AA   +AA +P      P+   + P   A  A
Sbjct: 67  VEVGGVLAIIGEPGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQA 120

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 86.5 bits (215), Expect = 9e-19
 Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 90  LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149
           L+ A+ P M E    GTLAK+LK+ GD+V+  + IA+IETDK T++V +   G +  ++ 
Sbjct: 6   LMPALSPTMEE----GTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILV 61

Query: 150 KEG-ETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKD 208
            EG E V+    IAV+ + GE  + A +A  AAA+   A    +A     ++  APA   
Sbjct: 62  PEGTEGVKVNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAA-- 119

Query: 209 KTPSEPPPTAKKPTSPPSKPMAS 231
              +     A  P  P    M +
Sbjct: 120 -PAAPAAEVAADPDIPAGTEMVT 141

Length = 464

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 78.7 bits (194), Expect = 5e-16
 Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 66/348 (18%)

Query: 53  LSGNYVCSTPRSEVIELIQK---GSFIGSR---SRLFSSDSG--DLVDAVVPFMGESITD 104
           L G+ +  T R     +       S   S+   +R FSS S      +  +P +  ++T+
Sbjct: 67  LFGSNISRTARKNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQEIGMPSLSPTMTE 126

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKIAV 163
           G +A++LK+ GD+V   E + ++ETDK T+++   + G +  ++  +G + ++ G  IA+
Sbjct: 127 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAI 186

Query: 164 ISKSGEGVAQ--------AASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPP 215
             +  E + +        +A+     A+P P   K   E++  +  ++P  K   PS PP
Sbjct: 187 TVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPK---EEEVEKPASSPEPKASKPSAPP 243

Query: 216 PTAKKP-TSPPSKPMASEPQLP--------PKDRERR----------------------- 243
            +  +   SP ++ +A +  +P        P  R  +                       
Sbjct: 244 SSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSK 303

Query: 244 --------VPMTRLRKRVATRLKDSQNTFA--LLTTFNEVDMTNLMKLRSDYKDAFLEKH 293
                   +P T++RK  A+RL  S+ T     LT    VD   LM LRS   ++  E  
Sbjct: 304 APALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVD--KLMALRSQL-NSLQEAS 360

Query: 294 GVKLGLMSGFV-KAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGT 340
           G K   ++  V KAA  AL+  P  N+    D I     ++I+ AV T
Sbjct: 361 GGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQT 408

Length = 539

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 13/114 (11%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           VP +G    +  + + L + GD+VE ++ +  +E DK +++V SPQAGV++ +  K G+ 
Sbjct: 7   VPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK 64

Query: 155 VEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKD 208
           VE GA I +        A  A+    A      E  P+A      + AA A KD
Sbjct: 65  VETGALIMIF-----ESADGAADAAPAQAEEKKEAAPAA------APAAAAAKD 107

Length = 633

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 189 EKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTR 248
           E      ++  + A  A      S         T+ P+         PPK   +R  +  
Sbjct: 37  ENFIKSLKSAPTPAEAA------SVSSAQQAAKTAAPAAA-------PPKLEGKREKVAP 83

Query: 249 LRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV 308
           +RK +A  + +S +  A +   NE+DMT L  LR   KD  L+  GVKL  +    KA +
Sbjct: 84  IRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAIL 143

Query: 309 SALQHQPVVNAVID--GDDIIYRDYIDISFAVGT 340
            AL+  P+  A  D    +++Y D +++  AV T
Sbjct: 144 IALKEFPIFAAKYDEATSELVYPDTLNLGIAVDT 177

Length = 306

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 94  VVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153
            +P  G S+T+G +A +L Q GD VE  + +  +ETDK+T +V +P AG ++  +A+EGE
Sbjct: 6   TMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE 65

Query: 154 TVEPGAKIAVISKSGEGVAQA-ASAEKAAAQPPPAEEKPSAEKQTPESEAA 203
           T+  GA +AV+  +   V+ A   A  A      A E    E   P    A
Sbjct: 66  TLPVGALLAVV--ADAEVSDAEIDAFIAPFARRFAPEGIDEEDAGPAPRKA 114

Length = 371

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 26/70 (37%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
            P +GES+ +GT A++L + GD+V+  + + ++E  K+ +++ +P AGV++ ++ KEG+T
Sbjct: 5   SPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63

Query: 155 VEPGAKIAVI 164
           VE G  +A I
Sbjct: 64  VEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 87  SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146
           +    D  VP +G    +  + + L + GD VE ++ +  +E DK +++V +P AG ++ 
Sbjct: 102 AAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKE 159

Query: 147 LIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAV 206
           +    G+ V  G+ I V   +G      A+A  AA    PA              AA  V
Sbjct: 160 IKVNVGDKVSTGSLIMVFEVAG---EAPAAAPAAAEAAAPA----------AAPAAAAGV 206

Query: 207 KD 208
           KD
Sbjct: 207 KD 208

Length = 633

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           VP +G++  +G + + L +PGD+VE  + +  +E+DK +++V S  AG+I+ +  K G+T
Sbjct: 5   VPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT 63

Query: 155 VEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPA 205
           +  G  IA +       AQA + ++AA  P      P+A+ Q   +    +
Sbjct: 64  LPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSS 114

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 215 PPTAKKPTSPPSKPMASEPQLP----PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTF 270
           P   +  +      +    ++P    P     R+PMT +RK +A R+ +S  T    T  
Sbjct: 88  PENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMRKVIAQRMVESYLTAPTFTLN 147

Query: 271 NEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI--DGDDIIY 328
            EVDMT ++ LR    +  +E  G K  +      A V  L   P +NA +  DG  II 
Sbjct: 148 YEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIIT 207

Query: 329 RDYIDISFAVG 339
            +Y++++ AVG
Sbjct: 208 HNYVNLAMAVG 218

Length = 347

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 25/60 (41%), Positives = 40/60 (66%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           GT+ K L + GD+VE  +P+A +E  K+  +V +P AGV++ ++ KEG+ VE G  + VI
Sbjct: 8   GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           GT+ K   + GD V+  + +A IE  K+  ++ +P  GV++ ++ K G+ VE G  +AVI
Sbjct: 79  GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138

Query: 165 SK 166
             
Sbjct: 139 EP 140

Length = 140

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 24/62 (38%), Positives = 43/62 (69%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           +P + + + DGT+ K+LK+ GD+V+  + +A+IE  K T DV +P++G ++ ++ KEG  
Sbjct: 4   IPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK 63

Query: 155 VE 156
           VE
Sbjct: 64  VE 65

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 71   QKGSFIGSRSRLFSSDSGDLV---------DAVVP---FMGESITDGTLAKFLKQPGDRV 118
            Q+G+F   R+R  +S + DL          +A +P      ES   G   K L + GDRV
Sbjct: 1095 QQGAFEAERARWIASGNADLAEEVTEAPEEEADLPEGAEQVESEYAGNFWKVLVEVGDRV 1154

Query: 119  EMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
            E  +P+  +E  K+ + V++P AG +  ++ + G+ V+ G  +AV+
Sbjct: 1155 EAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVL 1200

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 3/98 (3%)

Query: 166 KSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPP 225
             G   A  A+A  AAA        P+A+     + A PA         P  A    + P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 226 SKPMASEPQLPPKDRERRVPMTRLR---KRVATRLKDS 260
           + P A+     P        +T LR     VA  +  S
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAKNMDAS 134

Length = 1228

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 46/285 (16%), Positives = 111/285 (38%), Gaps = 50/285 (17%)

Query: 99  GESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV--- 155
           GE I +  L ++  + GD+VE  +P+ ++++DK TI++ S   G +  +    G+ V   
Sbjct: 7   GEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVG 66

Query: 156 EPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPES-EAAPAVK------- 207
           E   KI V  +  + +   +      +    +  +            + PAV+       
Sbjct: 67  ETLLKIMV--EDSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYG 124

Query: 208 -------------------------DKTPSEPPPTAKKPTSPPSKPMASEPQLPPK--DR 240
                                     K   +   +A++ T    +  ++    P +    
Sbjct: 125 IDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYE 184

Query: 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN---LMKLRSDYKDAFLEKHGVKL 297
           ++ +P+   ++ +   +  +    A +  F+ V+  N   L++L++ +++   +   VK 
Sbjct: 185 DKTIPLRGFQRAMVKTMTAA----AKVPHFHYVEEINVDALVELKASFQENNTD-PTVKH 239

Query: 298 GLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGT 340
             +   +K+   AL   P++N+  + +  +I  +   +I  A+ T
Sbjct: 240 TFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMAT 284

Length = 416

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           GT+ K   + GD+V+  + +  +E  K+  ++ +P  G ++ ++ KEG+ V PG  +  I
Sbjct: 531 GTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEI 590

Query: 165 SK 166
             
Sbjct: 591 EP 592

Length = 592

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 18/87 (20%), Positives = 33/87 (37%)

Query: 152 GETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTP 211
           G+TV+      V   +      A      AA+P  A+ + +A  +TP +    A K+   
Sbjct: 217 GDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKA 276

Query: 212 SEPPPTAKKPTSPPSKPMASEPQLPPK 238
            E  P +    + P+   A++      
Sbjct: 277 PEAQPVSGTAAAEPAPKEAAKAAAAAA 303

Length = 400

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%)

Query: 172  AQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMAS 231
            A A+ +E   + P P +           + A P         PPPT+ +PT+PP  P   
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP 2846

Query: 232  EPQLPP 237
             P LP 
Sbjct: 2847 PPSLPL 2852

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 17/82 (20%), Positives = 21/82 (25%)

Query: 156 EPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPP 215
              A  A  + +     Q A A   A  PP       A        AA       P+   
Sbjct: 413 AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

Query: 216 PTAKKPTSPPSKPMASEPQLPP 237
                    P+ P A  P   P
Sbjct: 473 APEPTAAPAPAPPAAPAPAAAP 494

Length = 824

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score = 41.3 bits (98), Expect = 6e-04
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 105  GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
            G++   L + GD V+  +P+A IE  K+   + +P  G ++ ++ K G+ VE G  +  +
Sbjct: 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVEL 1144

Query: 165  SK 166
              
Sbjct: 1145 EP 1146

Length = 1146

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 26/81 (32%)

Query: 153 ETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPS 212
            +       A  + +      AA A KA A P PA    +A    P+  AA A      +
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 213 EPPPTAKKPTSPPSKPMASEP 233
            P   A    +  +      P
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 166 KSGEGVAQAASAEKAAAQPPPAEE---KPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPT 222
           K       AA AEK     P A      P A+     + AA      +    PP A  P 
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 223 SPPSKPMASEPQLPPK 238
              +   A+    P  
Sbjct: 425 PVAAPAAAAPAAAPAA 440

Length = 618

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPG 158
           G + K + + GD VE  + +  +E+ K+ I + + +AG ++ +  +EG+ V  G
Sbjct: 10  GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEG 63

Length = 70

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 86  DSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145
            S   + A +P        GT+     + G  V   + +  +E  K+   + +P+ GV+ 
Sbjct: 573 ASSGELLAPMP--------GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVA 624

Query: 146 NLIAKEGETVEPGAKIAVI 164
            L   EG+ V  G  +   
Sbjct: 625 KLAVAEGDQVAVGTVLVEF 643

Length = 645

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 16/68 (23%), Positives = 22/68 (32%)

Query: 172 AQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMAS 231
           A  +    A+A   P      +    P   +AP  K    +  PP AK     P     +
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 232 EPQLPPKD 239
           EP   P  
Sbjct: 423 EPSPTPPA 430

Length = 620

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI-SKSGEGVAQ 173
            D V       + E  +VT +VA+     + +   +    VE  ++  +   + G+   Q
Sbjct: 326 PDDVAEA---VKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQ 382

Query: 174 AA-----SAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKP 228
           A       AE A+A P       S        E  P V +K  + P P   KP       
Sbjct: 383 APAAHQVDAEAASAAPEEPAALASEAH----DETEPEVPEK--AAPIPDPAKPDELAVAG 436

Query: 229 MASEPQLP 236
              +P  P
Sbjct: 437 PGDDPAEP 444

Length = 460

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 18/91 (19%), Positives = 25/91 (27%)

Query: 145 QNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAP 204
           +   A  G         A  + +    A AA+    A   P      +A    P   AA 
Sbjct: 30  REFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA 89

Query: 205 AVKDKTPSEPPPTAKKPTSPPSKPMASEPQL 235
           A     P+ PP  A       +        L
Sbjct: 90  AAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 170 GVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPM 229
             A A +A  AAA P P    P+A        AAPA     P+ P   A +  + P +  
Sbjct: 409 AAASAPAAPPAAAPPAPVAA-PAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVR-- 465

Query: 230 ASEPQLPPKDRERRVP 245
              P+           
Sbjct: 466 -VAPEPAVASAAPAPA 480

Length = 618

>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVI 144
           L + G  V+  +P   +E+ K   D+ SP +G +
Sbjct: 36  LPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEV 69

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. Length = 96

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 13/86 (15%)

Query: 171 VAQAASAEKAAAQPPPAEEKPSAE--KQTPESEAAPAVKDKTPSEPPPTAKKPTS----- 223
           V++A+S E   +  P   E+      + +PE+++       +P  P  T   P S     
Sbjct: 19  VSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPSPLPPNTTLDAPVSDSQGD 78

Query: 224 ------PPSKPMASEPQLPPKDRERR 243
                  P  P ++EP  PPK R RR
Sbjct: 79  ESSSEQQPQNPNSTEPAPPPKKRRRR 104

Length = 808

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 165 SKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSP 224
              G   +  A    AAA+PPPA    S++ +   +      K+      PP  +     
Sbjct: 826 PDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGA 885

Query: 225 PSKPMASEPQLP---PKDRERRVPMTRL 249
            + P A+    P   P  R R  P  +L
Sbjct: 886 AAPPKAAAAAPPAGAPAPRPRPAPRVKL 913

Length = 1352

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 14/140 (10%)

Query: 119  EMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGEGVAQAAS 176
             ++     +E   V  +    +  V++       E +      +  VI++S   VAQ  +
Sbjct: 887  VVEAVAEVVEEPVVVAEPQPEEVVVVE---TTHPEVIAAPVTEQPQVITESDVAVAQEVA 943

Query: 177  AEKAAAQPPPAEEKPSAEKQT--------PESEAAPAVKDKTPSEPPPTAKKPTSPPSKP 228
                    P  E     E           PE  A PA                   P   
Sbjct: 944  EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAP-VVAEVAAEVETVTAVEPEVA 1002

Query: 229  MASEPQLPPKDRERRVPMTR 248
             A  P+   +      PMTR
Sbjct: 1003 PAQVPEATVEHNHATAPMTR 1022

Length = 1068

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	99.95
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	99.94
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	99.94
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.87
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.81
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.78
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.75
PRK06748	83	hypothetical protein; Validated	99.75
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.63
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.6
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.6
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.59
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.54
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.48
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.47
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.44
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.43
PRK07051	80	hypothetical protein; Validated	99.42
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.38
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.37
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.33
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.31
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.27
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.24
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.23
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.14
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.09
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.07
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.05
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.95
PRK12999	1146	pyruvate carboxylase; Reviewed	98.84
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.78
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.5
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.47
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.23
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	98.14
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.1
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.1
PRK09783	409	copper/silver efflux system membrane fusion protei	98.01
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.01
PRK00624	114	glycine cleavage system protein H; Provisional	98.0
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.97
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.9
PRK13380	144	glycine cleavage system protein H; Provisional	97.87
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.84
PRK01202	127	glycine cleavage system protein H; Provisional	97.75
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.7
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.7
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.67
PRK12784	84	hypothetical protein; Provisional	97.64
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.6
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.57
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.56
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.5
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.5
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.44
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.41
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.37
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	97.23
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.22
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.11
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	97.01
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.9
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.77
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.56
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	96.47
PRK13757	219	chloramphenicol acetyltransferase; Provisional	96.42
PRK06748	83	hypothetical protein; Validated	96.31
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	96.05
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	96.04
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.03
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	95.98
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.86
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	95.84
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	95.67
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	95.54
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	95.46
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	95.44
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	95.41
PRK07051	80	hypothetical protein; Validated	95.41
PF13437	105	HlyD_3: HlyD family secretion protein	94.98
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	94.86
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	94.75
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	94.73
PRK10476	346	multidrug resistance protein MdtN; Provisional	94.31
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	94.28
PF00529	305	HlyD: HlyD family secretion protein the correspond	94.2
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	94.16
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	93.92
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	93.9
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	93.88
COG3608	331	Predicted deacylase [General function prediction o	93.49
PF00529	305	HlyD: HlyD family secretion protein the correspond	93.38
PRK11578	370	macrolide transporter subunit MacA; Provisional	93.15
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	93.14
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	93.1
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	93.1
PRK09859	385	multidrug efflux system protein MdtE; Provisional	93.06
PRK14042	596	pyruvate carboxylase subunit B; Provisional	93.02
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	92.9
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	92.9
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	92.81
PF13437	105	HlyD_3: HlyD family secretion protein	92.8
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	92.71
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.51
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	92.31
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	92.27
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.14
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	92.12
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.08
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	92.08
PRK15136	390	multidrug efflux system protein EmrA; Provisional	91.64
PRK03598	331	putative efflux pump membrane fusion protein; Prov	91.63
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	91.51
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	91.42
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	91.13
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	91.08
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	90.52
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	90.38
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	90.16
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	89.95
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	89.93
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	89.52
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	89.48
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	89.15
PRK09783	409	copper/silver efflux system membrane fusion protei	89.05
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	88.3
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	88.18
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	88.05
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	88.0
PRK05035	695	electron transport complex protein RnfC; Provision	87.93
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	87.28
PRK09282	592	pyruvate carboxylase subunit B; Validated	86.85
PRK14040	593	oxaloacetate decarboxylase; Provisional	86.34
COG4072	161	Uncharacterized protein conserved in archaea [Func	86.28
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	86.14
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	86.13
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	84.31
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	84.18
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	84.06
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	83.89
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	83.59
COG2190	156	NagE Phosphotransferase system IIA components [Car	83.5
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	83.2
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	83.2
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	83.09
PRK12999	1146	pyruvate carboxylase; Reviewed	83.03
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	82.66
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	82.57
PRK05305	206	phosphatidylserine decarboxylase; Provisional	82.33
PRK12784	84	hypothetical protein; Provisional	82.28
PRK09439	169	PTS system glucose-specific transporter subunit; P	81.95
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	81.77

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=6.4e-57  Score=452.65  Aligned_cols=329  Identities=62%  Similarity=0.902  Sum_probs=236.4

Q ss_pred             Ccc-ceeeeccc---chhhhccccccccCccccchhh---hh--hhhcccceeeeccceee--cCCcccccCCCchhhhh
Q 018779            1 MIW-GIVRRKIT---SAQVIGQSVSKIGPRCHATAQK---EA--ILTCRGFQRVQRSSYHI--LSGNYVCSTPRSEVIEL   69 (350)
Q Consensus         1 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~   69 (350)
                      ||+ +++||.-+   |+++.+.+++.-+-..++.|..   +.  ++|.+...|    |||-  +.++-.|..+.+...  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--   74 (463)
T PLN02226          1 MMLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLSGSETGALLHRGNHAH----SFHNLALPGNSGISRSASLVS--   74 (463)
T ss_pred             CcHHHHHHhhccCCCChhhhhhhhhhchhhccCcccccccccchhhhcccccc----chhhcccCCccccCCchhhhh--
Confidence            554 55665544   8999998888776554333332   22  444443332    3443  344445555543222  


Q ss_pred             hhcCCccccccccccCCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779           70 IQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA  149 (350)
Q Consensus        70 ~~~~~~~~~~~r~~~~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~  149 (350)
                          .+.++|.|.|....+.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+||++|+|.+|++
T Consensus        75 ----~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv  150 (463)
T PLN02226         75 ----STLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV  150 (463)
T ss_pred             ----hhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence                2345788999888777799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEeCCCCEEEEEEeCCCccccccccccccCCCCCCCCCCCCcCCCCCcccCcccccCC-CCCCCCCCCCCCCCCCCC
Q 018779          150 KEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-PSEPPPTAKKPTSPPSKP  228 (350)
Q Consensus       150 ~eG~~v~vG~~la~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~~~-~s~~~~~~~~~~~~~~~~  228 (350)
                      ++||.|++|++|++|+.+++..+...+..+.+....+.+..+........+.++|++|+.. ++++.+    ..     .
T Consensus       151 ~eGd~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~~----~~-----~  221 (463)
T PLN02226        151 KEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPP----PK-----Q  221 (463)
T ss_pred             CCCCEecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCCC----Cc-----c
Confidence            9999999999999997543221100000000000000000000001112345677776532 111100    00     0


Q ss_pred             CCCCCCCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 018779          229 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV  308 (350)
Q Consensus       229 ~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva  308 (350)
                      ....+..+....++.+||++|||.||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||++
T Consensus       222 ~~~~~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva  301 (463)
T PLN02226        222 SAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAV  301 (463)
T ss_pred             cccCcccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHH
Confidence            00000000111245689999999999999999999999999999999999999999998776667999999999999999


Q ss_pred             HHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779          309 SALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       309 ~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      +||++||++|++|+++.|+++++||||||||+++||++|-
T Consensus       302 ~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPV  341 (463)
T PLN02226        302 SALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPV  341 (463)
T ss_pred             HHHHhCCHhheEEcCCEEEEeCcccEEEEEECCCCEEecc
Confidence            9999999999999999999999999999999999999983

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=5.9e-52  Score=414.22  Aligned_cols=259  Identities=38%  Similarity=0.593  Sum_probs=199.9

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |+++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++||+|+||++|++|++++
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~   80 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG   80 (404)
T ss_pred             CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CccccccccccccCCCCCCCCCC-CCcCCCCCcccCcccccCC-----------CCCCCCCCCCCCC--------CCCC-
Q 018779          169 EGVAQAASAEKAAAQPPPAEEKP-SAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPTS--------PPSK-  227 (350)
Q Consensus       169 ~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~~~--------~~~~-  227 (350)
                      ++..........+....+..++. ..........++|++|+++           ++++.+...+.+.        .... 
T Consensus        81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~  160 (404)
T COG0508          81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA  160 (404)
T ss_pred             CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence            64211111000000000100000 0011114567889998863           2344332221110        0000 


Q ss_pred             CCCCCCCC-CCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 018779          228 PMASEPQL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA  306 (350)
Q Consensus       228 ~~~~~~~~-~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKA  306 (350)
                      ..+..+.. ......+++||+++||.|+++|.+|++++||+|++.++|++.|+++|+++++.+.++ |+|+||++||+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA  239 (404)
T COG0508         161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA  239 (404)
T ss_pred             cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence            00000000 123456889999999999999999999999999999999999999999999987755 9999999999999


Q ss_pred             HHHHHhhCCcceeEEeCC--eEEEcCCccEEEEeecCCceeecC
Q 018779          307 AVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       307 va~AL~~~P~lNa~~d~~--~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      ++.||++||.+|++||++  .|++++++||||||+|++||++|-
T Consensus       240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpV  283 (404)
T COG0508         240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPV  283 (404)
T ss_pred             HHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecc
Confidence            999999999999999975  799999999999999999999983

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=3.6e-51  Score=408.93  Aligned_cols=259  Identities=45%  Similarity=0.658  Sum_probs=197.7

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|++|+.++
T Consensus         1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704          1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             Cccccc-cccccccCCCCCCCCCCCCcCCCCCcccCcccccCC-----------CCCCCCCCCCCC----------CCCC
Q 018779          169 EGVAQA-ASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT----------SPPS  226 (350)
Q Consensus       169 ~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~~----------~~~~  226 (350)
                      +..... .+....+..+.+.+.............++|++|+++           ++|+.+...+.+          .+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  160 (407)
T PRK05704         81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA  160 (407)
T ss_pred             cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence            321110 000000000000000000001112346899999863           455554432110          0000


Q ss_pred             CCCCC-CC-CC-CCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 018779          227 KPMAS-EP-QL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF  303 (350)
Q Consensus       227 ~~~~~-~~-~~-~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fl  303 (350)
                      .+... .+ .. ......+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.++.|+|+||++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l  240 (407)
T PRK05704        161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF  240 (407)
T ss_pred             CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence            00000 00 00 00112456899999999999999999999999999999999999999999987766678999999999


Q ss_pred             HHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779          304 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       304 iKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +||+++||++||.||++|++++|++++++||||||++++||++|
T Consensus       241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivP  284 (407)
T PRK05704        241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVP  284 (407)
T ss_pred             HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeC
Confidence            99999999999999999999999999999999999999999998

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=7.3e-51  Score=405.91  Aligned_cols=251  Identities=48%  Similarity=0.720  Sum_probs=189.6

Q ss_pred             cCCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779           84 SSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV  163 (350)
Q Consensus        84 ~~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~  163 (350)
                      +...+.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|++
T Consensus        38 ~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~  117 (418)
T PTZ00144         38 SKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSE  117 (418)
T ss_pred             ccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEE
Confidence            33345678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCccccccccccccCCCC-CCCCCC-C--CcC---CCCCcccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018779          164 ISKSGEGVAQAASAEKAAAQPP-PAEEKP-S--AEK---QTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLP  236 (350)
Q Consensus       164 i~~~~~~~~~~~p~~~~~~~~~-~~~~~~-~--~~~---~~~~~~asP~vr~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  236 (350)
                      |+..++..... ........++ +.+... .  +..   ......++|.+|+...           .+.+.+.+ .+...
T Consensus       118 I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~-----------~~~~~~~~-~~~~~  184 (418)
T PTZ00144        118 IDTGGAPPAAA-PAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP-----------APAAKPPP-TPVAR  184 (418)
T ss_pred             EcCCCcccccc-ccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhcccc-----------CCCCCCCC-CCccc
Confidence            97654321100 0000000000 000000 0  000   0001223444433110           00000000 00000


Q ss_pred             CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCc
Q 018779          237 PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPV  316 (350)
Q Consensus       237 ~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~  316 (350)
                      ....++.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||++.||++||.
T Consensus       185 ~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~  264 (418)
T PTZ00144        185 ADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPI  264 (418)
T ss_pred             cCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChH
Confidence            01123568999999999999999999999999999999999999999999877666799999999999999999999999


Q ss_pred             ceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779          317 VNAVIDGDDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       317 lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +|++|++++|+++++|||||||++++||++|
T Consensus       265 ~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vP  295 (418)
T PTZ00144        265 VNAYIDGDEIVYRNYVDISVAVATPTGLVVP  295 (418)
T ss_pred             hheEEcCCEEEEecCCCEEEEEECCCCEEEc
Confidence            9999999899999999999999999999998

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=1.7e-50  Score=403.45  Aligned_cols=256  Identities=44%  Similarity=0.667  Sum_probs=195.6

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCCc
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG  170 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~~  170 (350)
                      ++|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+||++|+|.+|++++|+.|++|++|++|+.+++.
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~   80 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA   80 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999865422


Q ss_pred             cccccccccccCCCCC--CCCCCCCcCCCCCcccCcccccCC-----------CCCCCCCCCCCC------CC--CCCC-
Q 018779          171 VAQAASAEKAAAQPPP--AEEKPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT------SP--PSKP-  228 (350)
Q Consensus       171 ~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~~------~~--~~~~-  228 (350)
                      .. ..+....+.+..+  .+++.........+.++|++|+++           ++|+.+...+.+      ..  .+.+ 
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~  159 (403)
T TIGR01347        81 TA-APPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPA  159 (403)
T ss_pred             cc-cccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCC
Confidence            11 0000000000000  000000011112345899999863           455554332110      00  0000 


Q ss_pred             CCCCCCCC--CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 018779          229 MASEPQLP--PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA  306 (350)
Q Consensus       229 ~~~~~~~~--~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKA  306 (350)
                      .+.....+  .....+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||
T Consensus       160 ~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA  239 (403)
T TIGR01347       160 PAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKA  239 (403)
T ss_pred             CCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHH
Confidence            00000000  0112456899999999999999999999999999999999999999999987766679999999999999


Q ss_pred             HHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779          307 AVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       307 va~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      ++.||++||.||++|+++.|++++++||||||++++||++|
T Consensus       240 ~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vP  280 (403)
T TIGR01347       240 VVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVP  280 (403)
T ss_pred             HHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEEC
Confidence            99999999999999999999999999999999999999998

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=1e-50  Score=415.01  Aligned_cols=269  Identities=25%  Similarity=0.325  Sum_probs=202.8

Q ss_pred             ccccccCCCCc--eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-Ee
Q 018779           79 RSRLFSSDSGD--LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TV  155 (350)
Q Consensus        79 ~~r~~~~~~~~--~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v  155 (350)
                      +.|.|+++.++  .++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++|++|+++|+|.+|++++|+ .|
T Consensus        99 ~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v  178 (539)
T PLN02744         99 SARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEI  178 (539)
T ss_pred             ccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCccc
Confidence            46889887655  5899999999999999999999999999999999999999999999999999999999999996 79


Q ss_pred             CCCCEEEEEEeCCCcccc-----c----ccccc----ccC--CCC----CCCCCC---CCc-C---CCCCcccCcccccC
Q 018779          156 EPGAKIAVISKSGEGVAQ-----A----ASAEK----AAA--QPP----PAEEKP---SAE-K---QTPESEAAPAVKDK  209 (350)
Q Consensus       156 ~vG~~la~i~~~~~~~~~-----~----~p~~~----~~~--~~~----~~~~~~---~~~-~---~~~~~~asP~vr~~  209 (350)
                      ++|++|++|.+++++...     .    .+...    .+.  ...    +.+.+.   ... .   ....+.++|++|++
T Consensus       179 ~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrL  258 (539)
T PLN02744        179 KVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKL  258 (539)
T ss_pred             CCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHH
Confidence            999999999543322100     0    00000    000  000    000000   000 0   11124579999886


Q ss_pred             C-----------CCCCCCCCCCCCC----C--CCCCCCCCC--CCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEE
Q 018779          210 T-----------PSEPPPTAKKPTS----P--PSKPMASEP--QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTF  270 (350)
Q Consensus       210 ~-----------~s~~~~~~~~~~~----~--~~~~~~~~~--~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~  270 (350)
                      +           ++|+.+...+.+.    .  ...+..+.+  ...+...++.+||++|||.||++|++||+++||||++
T Consensus       259 Are~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~  338 (539)
T PLN02744        259 AEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLT  338 (539)
T ss_pred             HHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEEE
Confidence            3           4566554332110    0  000000000  0011112356899999999999999999999999999


Q ss_pred             eEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779          271 NEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       271 ~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      .|+|+|+|+++|+++|+.+.+..|+|+||++||+||++.||++||.||++|+++.|+++++|||||||+|++||++|
T Consensus       339 ~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vP  415 (539)
T PLN02744        339 VDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVP  415 (539)
T ss_pred             EEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEEC
Confidence            99999999999999998765556899999999999999999999999999999999999999999999999999998

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=1.4e-51  Score=392.98  Aligned_cols=254  Identities=54%  Similarity=0.823  Sum_probs=192.6

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      .+++.+|.++|+++||+|.+|++++||+|+++|.||+|||||.+++|+||.+|+|.++++++||+|..|+.|+.|....+
T Consensus        72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaA  151 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAA  151 (457)
T ss_pred             eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999987533


Q ss_pred             cccc--ccccccccCCCCCCCCCCCC-cCCCCCcccCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCC------CCC
Q 018779          170 GVAQ--AASAEKAAAQPPPAEEKPSA-EKQTPESEAAPAVKDK-TPSEPPPTAKKPTSPPSKPMASEPQLP------PKD  239 (350)
Q Consensus       170 ~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~~~~~asP~vr~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~  239 (350)
                      ....  .+|+.+.+.++ ++..++++ ..+.......|..+.. +++.+.  +..  +++..++..++..+      +..
T Consensus       152 pa~~~~~apa~~~pk~~-~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~--P~~--~~a~k~~v~~~~~~p~~~~~~~R  226 (457)
T KOG0559|consen  152 PAKGGASAPAKAEPKTA-PAAAAPPKPSSKPPPKEAAPVAESPPAPSSPE--PVP--ASAKKPSVAQPKPPPSEGATPSR  226 (457)
T ss_pred             CccccccCCCccCCCCC-CCCCCCCCccCCCCccccCCCCCCCCCCCCCC--CCC--ccccCccccCCCCCcccccCCCc
Confidence            2211  12222211110 00000000 1111111222221110 000000  000  00000000111111      134


Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      .+++++|++||+.||+||.+|+++.+.+|+|+||||++|+++|++||+.|.+++|+|+.||.+|+|||+.||++.|.+|+
T Consensus       227 ~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNa  306 (457)
T KOG0559|consen  227 SERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNA  306 (457)
T ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceee
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779          320 VIDGDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       320 ~~d~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      .+|+++|+|++|+||+|||+||+||++|-
T Consensus       307 vIdg~~iVYRDyvDISvAVaTpkGLVvPV  335 (457)
T KOG0559|consen  307 VIDGDDIVYRDYVDISVAVATPKGLVVPV  335 (457)
T ss_pred             eecCCeeEEeecceeEEEeecCCceeeee
Confidence            99999999999999999999999999983

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=7.7e-50  Score=415.68  Aligned_cols=261  Identities=33%  Similarity=0.510  Sum_probs=196.0

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ++.++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++++||.|++|++|++|+.+
T Consensus       133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~  212 (590)
T TIGR02927       133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA  212 (590)
T ss_pred             CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             CCcccc-----ccc-c------ccccC-CCC----CCC---C----CC---C-C-c--C-CCCCcccCcccccCC-----
Q 018779          168 GEGVAQ-----AAS-A------EKAAA-QPP----PAE---E----KP---S-A-E--K-QTPESEAAPAVKDKT-----  210 (350)
Q Consensus       168 ~~~~~~-----~~p-~------~~~~~-~~~----~~~---~----~~---~-~-~--~-~~~~~~asP~vr~~~-----  210 (350)
                      ++....     ... .      ...+. ...    ..+   .    ..   . . .  . ....+.++|++|+++     
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv  292 (590)
T TIGR02927       213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI  292 (590)
T ss_pred             CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence            432110     000 0      00000 000    000   0    00   0 0 0  0 112356799999863     


Q ss_pred             ------CCCCCCCCCCC-------C-----CCCCC----CCCCC---C-CCC-C---CCCcceeeCchHHHHHHHHHHhc
Q 018779          211 ------PSEPPPTAKKP-------T-----SPPSK----PMASE---P-QLP-P---KDRERRVPMTRLRKRVATRLKDS  260 (350)
Q Consensus       211 ------~s~~~~~~~~~-------~-----~~~~~----~~~~~---~-~~~-~---~~~~~~vpls~~Rk~IA~~m~~S  260 (350)
                            ++|+.++..+.       .     ..+..    ..+..   + ..+ +   ...++.+||++|||.||++|++|
T Consensus       293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S  372 (590)
T TIGR02927       293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA  372 (590)
T ss_pred             CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence                  45555432210       0     00000    00000   0 000 0   01245789999999999999999


Q ss_pred             cccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEe
Q 018779          261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAV  338 (350)
Q Consensus       261 ~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~vnIGIAV  338 (350)
                      |+++||||+++|||||+|+++|+++|+.+.+++|+|||||+||+||+++||++||.||++|++  ++|+++++|||||||
T Consensus       373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv  452 (590)
T TIGR02927       373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV  452 (590)
T ss_pred             hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence            999999999999999999999999998766566899999999999999999999999999985  479999999999999


Q ss_pred             ecCCceeecC
Q 018779          339 GTKKVCDNSF  348 (350)
Q Consensus       339 dT~~GLi~~~  348 (350)
                      ||++||++|-
T Consensus       453 ~t~~GL~vPv  462 (590)
T TIGR02927       453 DTDAGLLSPV  462 (590)
T ss_pred             ECCCCcEecc
Confidence            9999999983

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=1.9e-49  Score=376.84  Aligned_cols=291  Identities=21%  Similarity=0.324  Sum_probs=216.6

Q ss_pred             eccceeecCCcccccCCCchhhhhhhcCCccccccccccCCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEE
Q 018779           46 QRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIA  125 (350)
Q Consensus        46 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~  125 (350)
                      .+++.|..+++|.|+..+..+..--.     ........+.+| .++|++.++||+|.|++|.+|+|||||+|++.|+||
T Consensus        26 ~~~~~h~skp~~v~l~~~~~~~~s~~-----~~~~~~t~s~~g-vv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lC   99 (474)
T KOG0558|consen   26 LSSSLHVSKPFFVTLMKWGGGSRSWF-----SNEAMATDSNSG-VVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLC   99 (474)
T ss_pred             hccCccccCcceEEEeccCCcccccc-----chhhhhcccccc-eEEEEhhhccccceeeeeeeehhhcCCcHHHhcchh
Confidence            34556778889999888765542000     000111112234 899999999999999999999999999999999999


Q ss_pred             EEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCCccccccccccccCCCCCCC-CCCCCcCCCCCcccCc
Q 018779          126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAE-EKPSAEKQTPESEAAP  204 (350)
Q Consensus       126 evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~asP  204 (350)
                      ||++|||+++|.+.|+|+|.+|+.+.||...||++|..++.++..+...    +..+.++... .....+....+.+++|
T Consensus       100 EVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~~ds~e----~s~es~~vs~~~~~~~~~~~~~tlaTP  175 (474)
T KOG0558|consen  100 EVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDSQDSPE----DSDESPAVSLGESKQGEESLLKTLATP  175 (474)
T ss_pred             hcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccCcCCcc----cCCccccccCCCCchhhhhccccccCH
Confidence            9999999999999999999999999999999999999999776432211    1111111111 1111233445678999


Q ss_pred             ccccCC-----------CCCCCCCCCC----------CC-C-CCC--------CCCCCCCCCCCCCCcceeeCchHHHHH
Q 018779          205 AVKDKT-----------PSEPPPTAKK----------PT-S-PPS--------KPMASEPQLPPKDRERRVPMTRLRKRV  253 (350)
Q Consensus       205 ~vr~~~-----------~s~~~~~~~~----------~~-~-~~~--------~~~~~~~~~~~~~~~~~vpls~~Rk~I  253 (350)
                      +||+++           +++-.++.-+          +. . ++.        .+++.......-..+..+|+.+++|+|
T Consensus       176 aVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAM  255 (474)
T KOG0558|consen  176 AVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAM  255 (474)
T ss_pred             HHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHH
Confidence            999864           2232222111          00 0 000        000111111112346789999999999


Q ss_pred             HHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCC
Q 018779          254 ATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDY  331 (350)
Q Consensus       254 A~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~  331 (350)
                      -+.|+++. .||||.+.+|+|+|.|+++|++||..+. +.|+|+|||+||+||++.||.+||.+|+++|+  +.|+++.+
T Consensus       256 vKtMt~al-kiPHF~y~dEIn~~sLvklr~elk~~a~-e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~s  333 (474)
T KOG0558|consen  256 VKTMTEAL-KIPHFGYVDEINCDSLVKLRQELKENAK-ERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGS  333 (474)
T ss_pred             HHHHHHHh-cCCccccccccChHHHHHHHHHHhhhhh-hcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcc
Confidence            99999995 7999999999999999999999998654 56999999999999999999999999999998  57999999


Q ss_pred             ccEEEEeecCCceeecC
Q 018779          332 IDISFAVGTKKVCDNSF  348 (350)
Q Consensus       332 vnIGIAVdT~~GLi~~~  348 (350)
                      ||||||+||++||++|.
T Consensus       334 HNIgvAmdT~~GLvVPN  350 (474)
T KOG0558|consen  334 HNIGVAMDTEQGLVVPN  350 (474)
T ss_pred             cceeEEecCCCceeccC
Confidence            99999999999999984

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=3.4e-47  Score=393.02  Aligned_cols=256  Identities=27%  Similarity=0.403  Sum_probs=191.4

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      .++|+||+||+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  194 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS  194 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            57999999999 99999999999999999999999999999999999999999999999999999999999999976443


Q ss_pred             ccccc-cccc-----cccCCCCC----CCC-CC--CCc-----C-CCCCc-ccCcccccCC-----------CCCCCCCC
Q 018779          170 GVAQA-ASAE-----KAAAQPPP----AEE-KP--SAE-----K-QTPES-EAAPAVKDKT-----------PSEPPPTA  218 (350)
Q Consensus       170 ~~~~~-~p~~-----~~~~~~~~----~~~-~~--~~~-----~-~~~~~-~asP~vr~~~-----------~s~~~~~~  218 (350)
                      ..... .+..     +.+....+    .+. ..  ...     . ..... .++|++|+++           ++++.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI  274 (546)
T TIGR01348       195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI  274 (546)
T ss_pred             CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence            21100 0000     00000000    000 00  000     0 01123 5799998753           45554432


Q ss_pred             CCC-------C----CCCCCCC-C-C---CCCCC-----CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechH
Q 018779          219 KKP-------T----SPPSKPM-A-S---EPQLP-----PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN  277 (350)
Q Consensus       219 ~~~-------~----~~~~~~~-~-~---~~~~~-----~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~  277 (350)
                      .+.       .    .+..... . .   .+..+     ....++.+||++|||.||++|++||+++||||++.|+|||+
T Consensus       275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~  354 (546)
T TIGR01348       275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE  354 (546)
T ss_pred             eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence            210       0    0000000 0 0   00000     00123568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEeecCCceeec
Q 018779          278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       278 L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      |+++|+++|+.+.+ .|+|+|||+||+||+++||++||.||++|++  +.|+++++|||||||+|++||++|
T Consensus       355 l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vP  425 (546)
T TIGR01348       355 MEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVP  425 (546)
T ss_pred             HHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEEC
Confidence            99999999976653 5899999999999999999999999999985  469999999999999999999998

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=3.1e-46  Score=374.45  Aligned_cols=253  Identities=16%  Similarity=0.283  Sum_probs=188.0

Q ss_pred             EEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCCccc
Q 018779           93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVA  172 (350)
Q Consensus        93 i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~~~~  172 (350)
                      |+||+||++|+||+|++|+|++||.|++||+|+++||||+.++++|+++|+|.++++++|+.+++|++|+.|+.+++...
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~   80 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL   80 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999975443211


Q ss_pred             c-ccccccccCCCCCCCCC-CCCcCCCCCcccCcccccCC-----------CCCCCCCCCCC---------C---CCCCC
Q 018779          173 Q-AASAEKAAAQPPPAEEK-PSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKP---------T---SPPSK  227 (350)
Q Consensus       173 ~-~~p~~~~~~~~~~~~~~-~~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~---------~---~~~~~  227 (350)
                      . ..+..+....+.+.+.+ ...........++|++|+++           ++++.+...+.         .   .+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~  160 (416)
T PLN02528         81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA  160 (416)
T ss_pred             cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence            0 00000000000000000 00001111246889998752           45554432110         0   00000


Q ss_pred             C---CCCC------CCCCCCC--CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCc
Q 018779          228 P---MASE------PQLPPKD--RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK  296 (350)
Q Consensus       228 ~---~~~~------~~~~~~~--~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvk  296 (350)
                      +   .+..      +..+...  .++.+||++|||+||++|++|| ++||||++.|+|+++|+++|+++|+... +.|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~~-~~g~k  238 (416)
T PLN02528        161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENNT-DPTVK  238 (416)
T ss_pred             ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhhh-hcCCc
Confidence            0   0000      0000001  2456899999999999999997 9999999999999999999999986543 45899


Q ss_pred             ccHHHHHHHHHHHHHhhCCcceeEEeCC--eEEEcCCccEEEEeecCCceeec
Q 018779          297 LGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       297 ls~~~fliKAva~AL~~~P~lNa~~d~~--~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +||++||+||+++||++||.||++|+++  .|++++++||||||++++||++|
T Consensus       239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vP  291 (416)
T PLN02528        239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVP  291 (416)
T ss_pred             ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEec
Confidence            9999999999999999999999999875  79999999999999999999998

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=6.4e-47  Score=372.66  Aligned_cols=258  Identities=25%  Similarity=0.345  Sum_probs=197.9

Q ss_pred             CCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCC-CEeCCCCEEEEEE
Q 018779           87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKIAVIS  165 (350)
Q Consensus        87 ~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG-~~v~vG~~la~i~  165 (350)
                      .+.+.+|.||.|+.+|+||.|++|.+||||.+++||+||||||||++|++|++++|+|.+|+++|| ..|+||.+||+|.
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            578899999999999999999999999999999999999999999999999999999999999999 7999999999998


Q ss_pred             eCCCcccccc-ccc----c-c-cC-C--CCCCC------C-CC-C----C--cCC-CCCcccCcccccC-----------
Q 018779          166 KSGEGVAQAA-SAE----K-A-AA-Q--PPPAE------E-KP-S----A--EKQ-TPESEAAPAVKDK-----------  209 (350)
Q Consensus       166 ~~~~~~~~~~-p~~----~-~-~~-~--~~~~~------~-~~-~----~--~~~-~~~~~asP~vr~~-----------  209 (350)
                      +.+++..+.+ +..    . . +. +  ++++.      + +. .    +  ... ..++.++|+++.+           
T Consensus       115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i  194 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI  194 (470)
T ss_pred             cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence            7666543321 000    0 0 00 0  00000      0 00 0    0  000 1244567777653           


Q ss_pred             CCCCCCCCCCCC-----------CC-CCCCCCCC--CC--CCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEE
Q 018779          210 TPSEPPPTAKKP-----------TS-PPSKPMAS--EP--QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEV  273 (350)
Q Consensus       210 ~~s~~~~~~~~~-----------~~-~~~~~~~~--~~--~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~ev  273 (350)
                      .++||.++..+.           ++ ..++++.+  .+  .......++.+|++.||+.|++||.+|+++|||+|+..++
T Consensus       195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~  274 (470)
T KOG0557|consen  195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDV  274 (470)
T ss_pred             cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeee
Confidence            356666542210           10 00010000  01  0011233789999999999999999999999999999999


Q ss_pred             echHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC-CeEEEcCCccEEEEeecCCceeec
Q 018779          274 DMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG-DDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       274 D~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~-~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +++.|+++|+++|  + ++.+.++|++|||+||++.||+++|++|++|.+ +.|+++++|||.+||+|++|||+|
T Consensus       275 ~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitP  346 (470)
T KOG0557|consen  275 NLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITP  346 (470)
T ss_pred             ehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccch
Confidence            9999999999999  2 356889999999999999999999999999988 689999999999999999999997

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=4.5e-46  Score=375.20  Aligned_cols=253  Identities=27%  Similarity=0.356  Sum_probs=189.9

Q ss_pred             EEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCE-eCCCCEEEEEEeCCCcc
Q 018779           93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET-VEPGAKIAVISKSGEGV  171 (350)
Q Consensus        93 i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~-v~vG~~la~i~~~~~~~  171 (350)
                      |+||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|+++++..
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~   81 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV   81 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence            67999999999999999999999999999999999999999999999999999999999999 99999999997543321


Q ss_pred             c-c--------c--cccc--cccC-C---CCC--CCC-CC-CCc---C-----CCCCcccCcccccCC-----------C
Q 018779          172 A-Q--------A--ASAE--KAAA-Q---PPP--AEE-KP-SAE---K-----QTPESEAAPAVKDKT-----------P  211 (350)
Q Consensus       172 ~-~--------~--~p~~--~~~~-~---~~~--~~~-~~-~~~---~-----~~~~~~asP~vr~~~-----------~  211 (350)
                      . .        .  ++..  ..+. .   +.+  .+. .. ...   .     ....+.++|++|+++           +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g  161 (435)
T TIGR01349        82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG  161 (435)
T ss_pred             ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence            1 0        0  0000  0000 0   000  000 00 000   0     001245789998753           4


Q ss_pred             CCCCCCCCCC-------C----CCCCCCCCCCC----CCC-CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEec
Q 018779          212 SEPPPTAKKP-------T----SPPSKPMASEP----QLP-PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDM  275 (350)
Q Consensus       212 s~~~~~~~~~-------~----~~~~~~~~~~~----~~~-~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~  275 (350)
                      +++.+...+.       .    .+.+...+..+    ..+ .....+.+||++|||.||++|++||+++||||++.|+||
T Consensus       162 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~  241 (435)
T TIGR01349       162 SGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNV  241 (435)
T ss_pred             CCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEh
Confidence            5555433211       0    00000000000    000 011235689999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779          276 TNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       276 t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      |+|+++|+++|+.+. + |.|+||++||+||+++||++||.||++|++++|+++++|||||||++++||++|
T Consensus       242 t~l~~~r~~~~~~~~-~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vP  311 (435)
T TIGR01349       242 DKLLALRKELNAMAS-E-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITP  311 (435)
T ss_pred             HHHHHHHHHHHhhhh-c-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEEC
Confidence            999999999997643 2 889999999999999999999999999999899999999999999999999998

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=9.1e-45  Score=380.92  Aligned_cols=258  Identities=23%  Similarity=0.346  Sum_probs=191.1

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ++.++|+||+||  |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++||.|++|++|+.|+.+
T Consensus       204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~  281 (633)
T PRK11854        204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE  281 (633)
T ss_pred             CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence            456899999999  999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCcccccc-c---cccccC--C-CCCCCCCC-CC------cCCCCCcccCcccccCC-----------CCCCCCCCCCC-
Q 018779          168 GEGVAQAA-S---AEKAAA--Q-PPPAEEKP-SA------EKQTPESEAAPAVKDKT-----------PSEPPPTAKKP-  221 (350)
Q Consensus       168 ~~~~~~~~-p---~~~~~~--~-~~~~~~~~-~~------~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~-  221 (350)
                      ++...... +   ..+.+.  . +.+...+. ..      ........++|++|+++           ++++.++..+. 
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D  361 (633)
T PRK11854        282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED  361 (633)
T ss_pred             CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence            43211000 0   000000  0 00000000 00      00111346799998753           45554432210 


Q ss_pred             ------C----CC-CCC--CCC-CC------CCCCC--CCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHH
Q 018779          222 ------T----SP-PSK--PMA-SE------PQLPP--KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM  279 (350)
Q Consensus       222 ------~----~~-~~~--~~~-~~------~~~~~--~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~  279 (350)
                            .    .. .+.  +.. ..      +..+.  ...++.+||++|||.||++|++||+++||||++.|+|+|+|+
T Consensus       362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~  441 (633)
T PRK11854        362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE  441 (633)
T ss_pred             HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence                  0    00 000  000 00      00000  012356899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-hCCCcccHHHHHHHHHHHHHhhCCcceeEEe--CCeEEEcCCccEEEEeecCCceeec
Q 018779          280 KLRSDYKDAFLE-KHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       280 ~lR~~lk~~~~~-~~gvkls~~~fliKAva~AL~~~P~lNa~~d--~~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      ++|+++|+.... +.|+|+||++||+||+++||++||.||++|+  +++|+++++|||||||++++||++|
T Consensus       442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vP  512 (633)
T PRK11854        442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVP  512 (633)
T ss_pred             HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEe
Confidence            999999854322 3589999999999999999999999999997  3579999999999999999999986

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=9.1e-44  Score=368.14  Aligned_cols=259  Identities=34%  Similarity=0.502  Sum_probs=193.0

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +++++|+||+||+ |+||+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...
T Consensus       117 ~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~  195 (547)
T PRK11855        117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA  195 (547)
T ss_pred             CCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence            4468999999999 999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCccccc---ccccc--c--c-CCCCCCCC---CCCC-c--CCCCCc-ccCcccccC-----------CCCCCCCCCCCC
Q 018779          168 GEGVAQA---ASAEK--A--A-AQPPPAEE---KPSA-E--KQTPES-EAAPAVKDK-----------TPSEPPPTAKKP  221 (350)
Q Consensus       168 ~~~~~~~---~p~~~--~--~-~~~~~~~~---~~~~-~--~~~~~~-~asP~vr~~-----------~~s~~~~~~~~~  221 (350)
                      ++.....   .+..+  .  . ....+...   .... .  ...... .++|++|++           .++++.+...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~  275 (547)
T PRK11855        196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE  275 (547)
T ss_pred             CCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHH
Confidence            3221000   00000  0  0 00000000   0000 0  001122 678999875           345555432210


Q ss_pred             -------C----CCCCC--CCCC---CC---CCCC-----CCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechH
Q 018779          222 -------T----SPPSK--PMAS---EP---QLPP-----KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN  277 (350)
Q Consensus       222 -------~----~~~~~--~~~~---~~---~~~~-----~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~  277 (350)
                             .    .+.+.  +...   ..   ..+.     ...++.+||++|||.||++|++||+++||||++.|+|+|+
T Consensus       276 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~  355 (547)
T PRK11855        276 DVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD  355 (547)
T ss_pred             HHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChH
Confidence                   0    00000  0000   00   0000     0124568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEe--CCeEEEcCCccEEEEeecCCceeecC
Q 018779          278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       278 L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d--~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      |+++|+++++.+.+ .|+|+||++||+||+++||++||.||++|+  ++.|+++++|||||||++++||++|+
T Consensus       356 l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpv  427 (547)
T PRK11855        356 LEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPV  427 (547)
T ss_pred             HHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCC
Confidence            99999999976543 489999999999999999999999999998  45899999999999999999999986

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=9.2e-42  Score=342.19  Aligned_cols=255  Identities=33%  Similarity=0.528  Sum_probs=191.4

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |+++++||+||++|+||+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...+
T Consensus         1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~   80 (411)
T PRK11856          1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG   80 (411)
T ss_pred             CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998655


Q ss_pred             C-ccccccc-ccc-ccCCCC--CCC--CCCC-C---c-CCC-CCcccCcccccCC-----------CCCCCCCCCCCC--
Q 018779          169 E-GVAQAAS-AEK-AAAQPP--PAE--EKPS-A---E-KQT-PESEAAPAVKDKT-----------PSEPPPTAKKPT--  222 (350)
Q Consensus       169 ~-~~~~~~p-~~~-~~~~~~--~~~--~~~~-~---~-~~~-~~~~asP~vr~~~-----------~s~~~~~~~~~~--  222 (350)
                      + ....... ... ...++.  ..+  ...+ .   . ... ....++|++|+++           ++++.+...+.+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~  160 (411)
T PRK11856         81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVE  160 (411)
T ss_pred             CCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHH
Confidence            4 2111100 000 000000  000  0000 0   0 001 1225789988753           455554332110  


Q ss_pred             -----C---CCCCCCCC-CCCCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhC
Q 018779          223 -----S---PPSKPMAS-EPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKH  293 (350)
Q Consensus       223 -----~---~~~~~~~~-~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~  293 (350)
                           .   +.+..... .+.......++.+||++|||.||++|++||+++|||+++.++|+|+|+++|+++++.     
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~-----  235 (411)
T PRK11856        161 AAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI-----  235 (411)
T ss_pred             HHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----
Confidence                 0   00000000 000001123567899999999999999999999999999999999999999999742     


Q ss_pred             CCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779          294 GVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       294 gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      +.++||++||+||+++||++||.||++|+++.|+++++||||+||++++||++|.
T Consensus       236 ~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pv  290 (411)
T PRK11856        236 GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPV  290 (411)
T ss_pred             ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCc
Confidence            4799999999999999999999999999999999999999999999999999874

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=99.95  E-value=1.7e-27  Score=233.93  Aligned_cols=108  Identities=31%  Similarity=0.439  Sum_probs=101.4

Q ss_pred             cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779          241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV  320 (350)
Q Consensus       241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~  320 (350)
                      .+.+||++|||.||++|++||+++||||++.|||+++|+++|+++|+.+.++.|+|+||++||+||++.||++||.||++
T Consensus       118 ~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~  197 (347)
T PRK14843        118 IERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINAS  197 (347)
T ss_pred             ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEE
Confidence            45689999999999999999999999999999999999999999998776666899999999999999999999999999


Q ss_pred             EeC--CeEEEcCCccEEEEeecCCceeecC
Q 018779          321 IDG--DDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       321 ~d~--~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      |++  +.|+++++|||||||+|++||++|-
T Consensus       198 ~~~~~~~i~~~~~vnigvAV~~~~GL~vPV  227 (347)
T PRK14843        198 LTEDGKTIITHNYVNLAMAVGMDNGLMTPV  227 (347)
T ss_pred             EecCCCeEEEecccceEEEEecCCCeEeCc
Confidence            985  4699999999999999999999983

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.94  E-value=4e-27  Score=227.70  Aligned_cols=107  Identities=31%  Similarity=0.462  Sum_probs=101.3

Q ss_pred             cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779          241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV  320 (350)
Q Consensus       241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~  320 (350)
                      ++.+||++||+.||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||+++||++||.+|++
T Consensus        76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~  155 (306)
T PRK11857         76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK  155 (306)
T ss_pred             ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence            45689999999999999999999999999999999999999999998776667999999999999999999999999999


Q ss_pred             EeC--CeEEEcCCccEEEEeecCCceeec
Q 018779          321 IDG--DDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       321 ~d~--~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      |++  +.|+++++|||||||||++||++|
T Consensus       156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vP  184 (306)
T PRK11857        156 YDEATSELVYPDTLNLGIAVDTEAGLMVP  184 (306)
T ss_pred             EeCCCCEEEEcCCccEEEEEECCCCEEeC
Confidence            985  479999999999999999999998

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=99.94  E-value=1.1e-26  Score=216.86  Aligned_cols=107  Identities=36%  Similarity=0.487  Sum_probs=96.0

Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      .++++|++++||+||++|++||+++||+|++.|||+|+|+++|+++|+...+ .+.|+|+++|++||++.||++||.||+
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~-~~~kis~~~~likAva~AL~~~P~lNa   81 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEE-PGGKISITDFLIKAVALALKEHPELNA   81 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHh-hccCCChhHeeeehHhhhhHHHHHhcc
Confidence            4678999999999999999999999999999999999999999999987653 356999999999999999999999999


Q ss_pred             EEeCCe-EEEcCCccEEEEeecCCceeec
Q 018779          320 VIDGDD-IIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       320 ~~d~~~-I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +|+++. |+++++|||||||++++||++|
T Consensus        82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vP  110 (231)
T PF00198_consen   82 SWDGDGEIVLYERVNIGVAVDTPDGLVVP  110 (231)
T ss_dssp             EEETTSEEEEESS--EEEEEEETTEEEEE
T ss_pred             ccccccceeeeeeEEEEEEEEcCCCEEEE
Confidence            999987 9999999999999999999997

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.87  E-value=2.6e-21  Score=204.90  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      ..+.+||++++++||++|..|+. +|++|.+.+||++.|+++|..+|+++.+.+|.|+|||+||+||+++||++||.+|+
T Consensus       114 ~~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNa  192 (1228)
T PRK12270        114 EDEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNR  192 (1228)
T ss_pred             CcceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhc
Confidence            34678999999999999999975 89999999999999999999999999888999999999999999999999999999


Q ss_pred             EEeC--C--eEEEcCCccEEEEeecC-----CceeecC
Q 018779          320 VIDG--D--DIIYRDYIDISFAVGTK-----KVCDNSF  348 (350)
Q Consensus       320 ~~d~--~--~I~~~~~vnIGIAVdT~-----~GLi~~~  348 (350)
                      +|++  +  .|+++++||||||||++     +||+||-
T Consensus       193 sy~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPv  230 (1228)
T PRK12270        193 HYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPA  230 (1228)
T ss_pred             eeeccCCCceeeccCCcceEEEEecCCCCCCcceeecc
Confidence            9984  3  49999999999999999     7999983

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.81  E-value=5.1e-20  Score=142.64  Aligned_cols=74  Identities=38%  Similarity=0.780  Sum_probs=72.3

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      .+|++|.+|..+++++|.+|++++||.|++||+||+|||||+.++|+||++|+|.++++++||.|.+|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.78  E-value=7.3e-19  Score=170.95  Aligned_cols=79  Identities=38%  Similarity=0.632  Sum_probs=76.2

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..+|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999999998644

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.75  E-value=4e-17  Score=166.16  Aligned_cols=81  Identities=36%  Similarity=0.646  Sum_probs=76.7

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEEEEeCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISKSG  168 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~i~~~~  168 (350)
                      .++|+||+||++|+||+|.+|+|++||.|++||+|++|||||++++++||.+|+|.+|++++|+ .|++|++|++|++++
T Consensus         2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~   81 (464)
T PRK11892          2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG   81 (464)
T ss_pred             CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence            4689999999999999999999999999999999999999999999999999999999999995 799999999998765


Q ss_pred             Cc
Q 018779          169 EG  170 (350)
Q Consensus       169 ~~  170 (350)
                      ++
T Consensus        82 ~~   83 (464)
T PRK11892         82 ES   83 (464)
T ss_pred             Cc
Confidence            44

>PRK06748 hypothetical protein; Validated

Probab=99.75  E-value=5.4e-18  Score=133.89  Aligned_cols=63  Identities=24%  Similarity=0.328  Sum_probs=61.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEc-CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIET-DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evet-dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      .|+|.+|+|++||.|++||+|++||| ||+.++|+||.+|+|.+|++++||.|++|++|+.|++
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            49999999999999999999999999 9999999999999999999999999999999999964

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.63  E-value=1.9e-15  Score=115.93  Aligned_cols=63  Identities=24%  Similarity=0.418  Sum_probs=60.9

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      -.|+|.+|++++||+|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|+
T Consensus         9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889          9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            459999999999999999999999999999999999999999999999999999999999984

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.60  E-value=5.4e-15  Score=113.32  Aligned_cols=72  Identities=35%  Similarity=0.637  Sum_probs=69.7

Q ss_pred             EEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779           93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus        93 i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      |.+|++|..+.+|++.+|++++||.|++||+|+++|++|+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            568999999999999999999999999999999999999999999999999999999999999999999875

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.60  E-value=2.8e-15  Score=156.94  Aligned_cols=79  Identities=43%  Similarity=0.752  Sum_probs=75.8

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      |.++|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++++|+.+|+|.++++++||.|++|++|+.|+..
T Consensus         1 M~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~   79 (590)
T TIGR02927         1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA   79 (590)
T ss_pred             CCeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence            3468999999999999999999999999999999999999999999999999999999999999999999999999764

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.59  E-value=3.9e-15  Score=157.19  Aligned_cols=77  Identities=32%  Similarity=0.588  Sum_probs=74.0

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      |..+|+||+||  |+||+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++||.|++|++|+.|+.+
T Consensus         1 m~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             CCceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            34689999999  999999999999999999999999999999999999999999999999999999999999999865

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.54  E-value=3.2e-14  Score=108.69  Aligned_cols=62  Identities=26%  Similarity=0.457  Sum_probs=60.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|.+|++++||+|++||+|+++|+||+.+++.++.+|+|.++++++||.|..|++|+.|+
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            59999999999999999999999999999999999999999999999999999999999884

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.48  E-value=1.1e-13  Score=144.10  Aligned_cols=79  Identities=38%  Similarity=0.667  Sum_probs=75.0

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |.++|+||++|+ |++|+|.+|+|++||.|++||+||+|||||+.++|+|+.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus         1 M~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~   79 (547)
T PRK11855          1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG   79 (547)
T ss_pred             CCceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence            346899999999 9999999999999999999999999999999999999999999999999999999999999997543

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.47  E-value=1.3e-13  Score=119.59  Aligned_cols=63  Identities=33%  Similarity=0.547  Sum_probs=61.0

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      --|++.+.+|++||.|++||+||.||.||+.++|+||.+|+|.+|++++||.|..|++|+.|.
T Consensus        77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            349999999999999999999999999999999999999999999999999999999999985

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.44  E-value=4.3e-13  Score=114.67  Aligned_cols=62  Identities=27%  Similarity=0.513  Sum_probs=60.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      ..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus        68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            46999999999999999999999999999999999999999999999999999999999987

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.43  E-value=3.5e-13  Score=140.18  Aligned_cols=75  Identities=32%  Similarity=0.626  Sum_probs=72.4

Q ss_pred             EEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        92 ~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +|+||+||+. ++|+|++|+|++||.|++||+|++|||||+.++|+|+.+|+|.++++++||.|.+|++|++|+..
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~   76 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG   76 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence            6899999987 99999999999999999999999999999999999999999999999999999999999999753

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK07051 hypothetical protein; Validated

Probab=99.42  E-value=1.2e-12  Score=102.93  Aligned_cols=70  Identities=29%  Similarity=0.414  Sum_probs=64.8

Q ss_pred             eEEEEccCCCCCCCeEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEE
Q 018779           90 LVDAVVPFMGESITDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIA  162 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la  162 (350)
                      ..+|..|      ..|++.+       |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+
T Consensus         3 ~~~~~ap------~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~   76 (80)
T PRK07051          3 QHEIVSP------LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLA   76 (80)
T ss_pred             ccEEeCC------CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEE
Confidence            3567777      5577888       99999999999999999999999999999999999999999999999999999


Q ss_pred             EEE
Q 018779          163 VIS  165 (350)
Q Consensus       163 ~i~  165 (350)
                      .|+
T Consensus        77 ~i~   79 (80)
T PRK07051         77 RIE   79 (80)
T ss_pred             EEe
Confidence            985

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.38  E-value=1.3e-12  Score=114.79  Aligned_cols=68  Identities=24%  Similarity=0.532  Sum_probs=63.6

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      ..|.-|      ..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus        85 ~~v~ap------~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         85 NVVTAP------MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CEEECC------CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            345555      56999999999999999999999999999999999999999999999999999999999987

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.37  E-value=3.4e-12  Score=94.99  Aligned_cols=62  Identities=40%  Similarity=0.705  Sum_probs=59.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      .+|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.33  E-value=3.5e-12  Score=119.72  Aligned_cols=62  Identities=26%  Similarity=0.450  Sum_probs=59.1

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|++.+       |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++||.|.+|++|+.|+
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            377777       99999999999999999999999999999999999999999999999999999984

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.31  E-value=2.6e-11  Score=89.73  Aligned_cols=73  Identities=44%  Similarity=0.763  Sum_probs=70.4

Q ss_pred             EEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779           92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus        92 ~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      ++.+|++|....+|+|.+|+++.|+.|..||+|+.++++|...++.++.+|++.+..+.+|+.+..|++|+.|
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999875

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.27  E-value=1.2e-11  Score=109.16  Aligned_cols=62  Identities=24%  Similarity=0.427  Sum_probs=59.0

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      -|++.+       |+|++||.|++||+||.||+||+.++|+|+++|+|.+|+++.|+.|..|++|+.|+
T Consensus        88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            477775       99999999999999999999999999999999999999999999999999999874

The gene name is accB or fabE.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.24  E-value=2e-11  Score=127.75  Aligned_cols=64  Identities=22%  Similarity=0.503  Sum_probs=61.6

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      -.|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus       532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            3599999999999999999999999999999999999999999999999999999999999963

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.23  E-value=2.6e-11  Score=106.88  Aligned_cols=62  Identities=27%  Similarity=0.467  Sum_probs=58.4

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      -|++-.       |+|++||.|++||+||.||+||+.++|+|+++|+|.+++++.|+.|..|++|+.|+
T Consensus        87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            366665       99999999999999999999999999999999999999999999999999999873

>TIGR02712 urea_carbox urea carboxylase

Probab=99.14  E-value=8.7e-11  Score=131.83  Aligned_cols=62  Identities=32%  Similarity=0.619  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|.+|+|++||+|++||+|++|||||++++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus      1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            59999999999999999999999999999999999999999999999999999999999884

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.09  E-value=2.3e-10  Score=119.83  Aligned_cols=58  Identities=22%  Similarity=0.436  Sum_probs=56.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI  161 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~l  161 (350)
                      .|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++||.|.+|++|
T Consensus       525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            5999999999999999999999999999999999999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.07  E-value=3.4e-10  Score=118.75  Aligned_cols=62  Identities=23%  Similarity=0.454  Sum_probs=60.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|++|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++||.|..|++|+.|.
T Consensus       532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  593 (593)
T PRK14040        532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA  593 (593)
T ss_pred             cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            58999999999999999999999999999999999999999999999999999999999873

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.05  E-value=3.7e-10  Score=125.93  Aligned_cols=63  Identities=21%  Similarity=0.473  Sum_probs=60.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      ..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus      1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            359999999999999999999999999999999999999999999999999999999999884

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.95  E-value=2.8e-09  Score=112.05  Aligned_cols=63  Identities=27%  Similarity=0.553  Sum_probs=61.0

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      ..|+|.+|+|++||.|++||+|++||++|+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus       529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            459999999999999999999999999999999999999999999999999999999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.84  E-value=7.1e-09  Score=116.12  Aligned_cols=62  Identities=27%  Similarity=0.574  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|++|+|++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            49999999999999999999999999999999999999999999999999999999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.78  E-value=1.5e-08  Score=103.71  Aligned_cols=62  Identities=23%  Similarity=0.416  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|+.+.|++|++|.+||+|+.+|.|||...|.||.+|+|.++.+.+||.|..|++|+.++
T Consensus       583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            49999999999999999999999999999999999999999999999999999999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.50  E-value=1.3e-07  Score=99.84  Aligned_cols=62  Identities=23%  Similarity=0.524  Sum_probs=60.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|++++|++||.|++||+|+.+|.+|+...|.||.||+|.+++|+.||.|..|+.|..++
T Consensus      1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            39999999999999999999999999999999999999999999999999999999999875

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.47  E-value=2.3e-07  Score=75.25  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=52.3

Q ss_pred             eEEEEccCCCCCCCeEEEEE-EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCE
Q 018779           90 LVDAVVPFMGESITDGTLAK-FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET  154 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~-w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~  154 (350)
                      ...+-|-+.+..+ =|+|.. |++++||.|++||+|++||++|+..+|.||.+|+|.++..+.++.
T Consensus        15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            4555555555443 467777 777889999999999999999999999999999999988877664

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.23  E-value=1.7e-06  Score=90.06  Aligned_cols=62  Identities=26%  Similarity=0.483  Sum_probs=60.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|+++.|++|+.|++||+||.+..+|+.|-|.||.+|+|+++++..|+.+..|+.++.|+
T Consensus      1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence            49999999999999999999999999999999999999999999999999999999999886

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=98.14  E-value=3.6e-06  Score=93.47  Aligned_cols=66  Identities=30%  Similarity=0.584  Sum_probs=62.6

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      +.|++++|+|+.||.|..||+-+|||.+||.|++.|+.+|+| +...+||+.+..|++||.+..++.
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp  757 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP  757 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence            789999999999999999999999999999999999999987 778999999999999999987654

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.10  E-value=2.9e-06  Score=70.78  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779          106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE  153 (350)
Q Consensus       106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~  153 (350)
                      .-+++ .++||.|++||+|++||++|+..+|.||.+|+|.++.-+..+
T Consensus        33 ~~v~l-p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~   79 (110)
T TIGR03077        33 LHIDL-PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED   79 (110)
T ss_pred             EEEEC-CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence            33344 366999999999999999999999999999999998655544

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.10  E-value=3e-06  Score=86.04  Aligned_cols=62  Identities=26%  Similarity=0.478  Sum_probs=59.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|.|.+++||+||.|++||.|+.++.+|+..-+.||.+|++..+.++.|++|.-|.+|..++
T Consensus       609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            38999999999999999999999999999999999999999999999999999999998763

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.01  E-value=2.4e-05  Score=79.07  Aligned_cols=67  Identities=21%  Similarity=0.359  Sum_probs=58.5

Q ss_pred             CeEEEEEEE-cCCCCeecCCCeEEEEEcC----------------------------------------------C--ee
Q 018779          103 TDGTLAKFL-KQPGDRVEMDEPIAQIETD----------------------------------------------K--VT  133 (350)
Q Consensus       103 ~eg~I~~w~-v~~Gd~V~~gd~l~evetd----------------------------------------------K--a~  133 (350)
                      ..|.|.+++ +++||.|++||+|++|++.                                              |  ..
T Consensus       130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            359999999 9999999999999999841                                              0  13


Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      ..|.||++|+|.+..+.+|+.|..|++|+.|.+.+.
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~  245 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP  245 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence            469999999999999999999999999999986554

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.01  E-value=1.7e-05  Score=77.13  Aligned_cols=36  Identities=17%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      ..|.||++|+|..+.+++|+.|..|++|+.|...+.
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~  240 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ  240 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence            468999999999999999999999999999986543

>PRK00624 glycine cleavage system protein H; Provisional

Probab=98.00  E-value=1.1e-05  Score=67.68  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=34.6

Q ss_pred             CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779          113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA  149 (350)
Q Consensus       113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~  149 (350)
                      ++|+.|++||+|++||++|+..+|.||.+|+|.++.-
T Consensus        41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~   77 (114)
T PRK00624         41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNT   77 (114)
T ss_pred             CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence            6699999999999999999999999999999999843

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.97  E-value=1.7e-05  Score=76.08  Aligned_cols=66  Identities=21%  Similarity=0.409  Sum_probs=58.3

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--------------------------------------------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------------------------------------------------  132 (350)
                      .+|+|.++++++||.|++||+|+.+++.-.                                                  
T Consensus        33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~  112 (322)
T TIGR01730        33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE  112 (322)
T ss_pred             ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            569999999999999999999999976311                                                  


Q ss_pred             ---------------------eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                                           ...|.||.+|+|..+.+++|+.+..|++|+.|...+
T Consensus       113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  169 (322)
T TIGR01730       113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD  169 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence                                 246999999999999999999999999999998654

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.90  E-value=3.9e-05  Score=74.72  Aligned_cols=67  Identities=16%  Similarity=0.292  Sum_probs=58.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC-----------------------------------e---------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----------------------------------V---------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK-----------------------------------a---------------  132 (350)
                      ..|.|.+++|++||.|++||+|+++++..                                   +               
T Consensus        54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~  133 (310)
T PRK10559         54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT  133 (310)
T ss_pred             CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999999999731                                   0               


Q ss_pred             --------------------eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          133 --------------------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       133 --------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                                          ...|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus       134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~  190 (310)
T PRK10559        134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS  190 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence                                2468999999999999999999999999998876443

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.87  E-value=1.8e-05  Score=69.03  Aligned_cols=62  Identities=19%  Similarity=0.280  Sum_probs=49.3

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcC-CCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQ-PGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE  153 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~-~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~  153 (350)
                      ..|-|-++... .=|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++....-+
T Consensus        31 ~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~   93 (144)
T PRK13380         31 VTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED   93 (144)
T ss_pred             EEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence            44444444432 23667777776 8999999999999999999999999999999998876554

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.84  E-value=4.2e-05  Score=75.24  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      ..|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~~  244 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTDH  244 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCCC
Confidence            358999999999999999999999999999986553

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.75  E-value=6.4e-05  Score=64.24  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=48.1

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEE---eeCCCCEeC---CCC-EEEEEEeCC
Q 018779          106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---IAKEGETVE---PGA-KIAVISKSG  168 (350)
Q Consensus       106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i---~~~eG~~v~---vG~-~la~i~~~~  168 (350)
                      .-++| .++|+.|++||+++.||++|+..+|.||.+|+|.++   +....+.+.   -|+ -|+.|...+
T Consensus        40 ~~v~l-p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~  108 (127)
T PRK01202         40 VFVEL-PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD  108 (127)
T ss_pred             eEEEc-CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence            33443 367999999999999999999999999999999999   444444554   444 788887543

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.70  E-value=0.00011  Score=73.74  Aligned_cols=36  Identities=14%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      ..|.||++|+|..+.+++|+.|..|++|+.|...+.
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~  251 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPATN  251 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCCc
Confidence            369999999999999999999999999999976544

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.70  E-value=9.3e-05  Score=73.93  Aligned_cols=67  Identities=15%  Similarity=0.271  Sum_probs=57.0

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--------------------------------------------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------------------------------------------------  132 (350)
                      ..|+|.++++++||.|++||+|+++++.-.                                                  
T Consensus        70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~  149 (385)
T PRK09578         70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER  149 (385)
T ss_pred             CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            469999999999999999999999987310                                                  


Q ss_pred             ---------------------eceecCCCCeEEEEEeeCCCCEeCCC--CEEEEEEeCCC
Q 018779          133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGE  169 (350)
Q Consensus       133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG--~~la~i~~~~~  169 (350)
                                           ...|.||++|+|.+.++++|+.|..|  ++|+.|...+.
T Consensus       150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~  209 (385)
T PRK09578        150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP  209 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence                                 24699999999999999999999985  58988875443

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.67  E-value=8.5e-05  Score=72.59  Aligned_cols=36  Identities=17%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      ..|.||++|+|..+.+.+|+.|..|++|+.|...+.
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~~  239 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTRP  239 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCCc
Confidence            479999999999999999999999999999975543

>PRK12784 hypothetical protein; Provisional

Probab=97.64  E-value=0.00024  Score=55.09  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC-CeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      -.|+|.+.++.++++|-+.++|+-|+++ +.-..|.--.+|.|.-+.+.+||.+..++.|+.++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence            4699999999999999999999999995 4556688899999999999999999999999999863

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.60  E-value=0.00017  Score=72.45  Aligned_cols=66  Identities=24%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--------------------------------------------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------------------------------------------------  132 (350)
                      -.|.|.++++++||.|++||+|++|+....                                                  
T Consensus        72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~  151 (397)
T PRK15030         72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  151 (397)
T ss_pred             CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            359999999999999999999999985210                                                  


Q ss_pred             ---------------------eceecCCCCeEEEEEeeCCCCEeCCCCE--EEEEEeCC
Q 018779          133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGAK--IAVISKSG  168 (350)
Q Consensus       133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~~--la~i~~~~  168 (350)
                                           ...|.||++|+|.+..+++|+.|..|++  |+.|...+
T Consensus       152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~  210 (397)
T PRK15030        152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD  210 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecC
Confidence                                 2468999999999999999999999985  67775544

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.57  E-value=0.00013  Score=52.21  Aligned_cols=30  Identities=10%  Similarity=0.336  Sum_probs=26.3

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa  132 (350)
                      ..|+|.+|+|++||.|++||+|++++++..
T Consensus         9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~   38 (50)
T PF13533_consen    9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL   38 (50)
T ss_pred             CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence            469999999999999999999999987643

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.56  E-value=0.00021  Score=71.37  Aligned_cols=66  Identities=21%  Similarity=0.295  Sum_probs=56.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------------------------------------------  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  131 (350)
                      ..|.|.++++++||.|++||+|++|+..-                                                   
T Consensus        68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~  147 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN  147 (385)
T ss_pred             CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            35999999999999999999999998630                                                   


Q ss_pred             --------------------eeceecCCCCeEEEEEeeCCCCEeCCCC--EEEEEEeCC
Q 018779          132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKSG  168 (350)
Q Consensus       132 --------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG~--~la~i~~~~  168 (350)
                                          ....|.||++|+|.+..+.+|+.|..|+  +|+.|...+
T Consensus       148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~  206 (385)
T PRK09859        148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLD  206 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecC
Confidence                                0247999999999999999999999985  688876544

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.50  E-value=0.00015  Score=51.85  Aligned_cols=36  Identities=25%  Similarity=0.565  Sum_probs=32.7

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ++.|.+|.+|+|.++++++|+.|+.|++|+.|+...
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            367899999999999999999999999999998643

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.50  E-value=0.00012  Score=62.56  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=37.5

Q ss_pred             cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779          112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE  153 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~  153 (350)
                      .++|+.|++||+++.||++|+..+|.||.+|+|.++.-..-+
T Consensus        44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~   85 (127)
T TIGR00527        44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED   85 (127)
T ss_pred             CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence            467999999999999999999999999999999997755444

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.44  E-value=0.00029  Score=71.34  Aligned_cols=65  Identities=23%  Similarity=0.401  Sum_probs=55.0

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--------------------------------------------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------------------------------------------------  132 (350)
                      ..|.|.++++++||.|++||+|++|.+...                                                  
T Consensus        94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~  173 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS  173 (415)
T ss_pred             ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            469999999999999999999999975210                                                  


Q ss_pred             ---------------------eceecCCCCeEEEEEeeCCCCEeCCCC--EEEEEEeC
Q 018779          133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKS  167 (350)
Q Consensus       133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~--~la~i~~~  167 (350)
                                           ...|.||++|+|....+++|+.|..|+  +|+.|...
T Consensus       174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~  231 (415)
T PRK11556        174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQT  231 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecC
Confidence                                 236899999999999999999999984  67777543

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.41  E-value=0.00039  Score=69.00  Aligned_cols=66  Identities=21%  Similarity=0.397  Sum_probs=55.3

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------------------------------------------  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  131 (350)
                      ..|.|.+|++++||.|++||+|+++++.-                                                   
T Consensus        68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~  147 (370)
T PRK11578         68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD  147 (370)
T ss_pred             cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            45999999999999999999999998731                                                   


Q ss_pred             ----------------------------------eeceecCCCCeEEEEEeeCCCCEeCCC---CEEEEEEeCC
Q 018779          132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPG---AKIAVISKSG  168 (350)
Q Consensus       132 ----------------------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG---~~la~i~~~~  168 (350)
                                                        ....|.||++|+|..+.+..|+.|..|   ++|+.|...+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~  221 (370)
T PRK11578        148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS  221 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecCC
Confidence                                              012699999999999999999999765   4788886544

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.37  E-value=0.00019  Score=69.04  Aligned_cols=65  Identities=18%  Similarity=0.443  Sum_probs=48.3

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--------------------------------------------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------------------------------------------------  132 (350)
                      .+|.| +|++++||.|++||+|++++++..                                                  
T Consensus        28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  106 (328)
T PF12700_consen   28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI  106 (328)
T ss_dssp             S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred             CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence            46999 999999999999999999997311                                                  


Q ss_pred             -----------------ec----------eecCCCCeEEE-------------------------EEeeCCCCEeCCCCE
Q 018779          133 -----------------TI----------DVASPQAGVIQ-------------------------NLIAKEGETVEPGAK  160 (350)
Q Consensus       133 -----------------~~----------ei~ap~~G~l~-------------------------~i~~~eG~~v~vG~~  160 (350)
                                       ..          .|.||++|+|.                         ++.+++|+.+..|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~  186 (328)
T PF12700_consen  107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP  186 (328)
T ss_dssp             STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred             HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence                             11          39999999999                         999999999999999


Q ss_pred             EEEEEeCC
Q 018779          161 IAVISKSG  168 (350)
Q Consensus       161 la~i~~~~  168 (350)
                      |+.|...+
T Consensus       187 l~~i~~~~  194 (328)
T PF12700_consen  187 LFTIADLS  194 (328)
T ss_dssp             SEEEEEES
T ss_pred             eeeeccCC
Confidence            99997654

...

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=97.23  E-value=0.0018  Score=59.76  Aligned_cols=73  Identities=25%  Similarity=0.330  Sum_probs=59.8

Q ss_pred             cccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCC-eEEEcCCccEEEEeecC
Q 018779          263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD-DIIYRDYIDISFAVGTK  341 (350)
Q Consensus       263 ~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~-~I~~~~~vnIGIAVdT~  341 (350)
                      .-|+++++.++|+|+|.+..++        .  ++++...++.++.+|+.++|+|.-+++++ ++.+++.+|.+.+|-.+
T Consensus        24 ~~p~~svT~~lDvT~l~~~~K~--------~--~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~   93 (206)
T PF00302_consen   24 DNPYFSVTVNLDVTNLYKYAKE--------K--GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHK   93 (206)
T ss_dssp             SBEEEEEEEEEE-HHHHHHHHH--------T--T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEET
T ss_pred             CCceEecceeEEhHHHHHHHHH--------c--CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeC
Confidence            4589999999999999977543        1  57899999999999999999999999987 99999999999999754


Q ss_pred             -Ccee
Q 018779          342 -KVCD  345 (350)
Q Consensus       342 -~GLi  345 (350)
                       ++..
T Consensus        94 ~~~tF   98 (206)
T PF00302_consen   94 DDETF   98 (206)
T ss_dssp             TTTEE
T ss_pred             CCCeE
Confidence             4554

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.22  E-value=0.0008  Score=65.43  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=28.4

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .|.||++|+|..+.+.+|+.|.. ++|+.|...+
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence            56799999999999999999986 7888887544

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.11  E-value=0.00081  Score=57.04  Aligned_cols=40  Identities=25%  Similarity=0.462  Sum_probs=32.5

Q ss_pred             cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCC
Q 018779          112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKE  151 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~e  151 (350)
                      .++|+.|++||+++.||++|...++.||.+|+|.++.-..
T Consensus        39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l   78 (122)
T PF01597_consen   39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL   78 (122)
T ss_dssp             B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred             ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence            4568899999999999999999999999999998875443

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=97.01  E-value=0.0019  Score=61.17  Aligned_cols=60  Identities=33%  Similarity=0.534  Sum_probs=52.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      +|.+ +..++-||.|++||+|+.|+.    .+|.||.+|+|.- ++++|-.|..|.-|+.|+.-.+
T Consensus       172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDPR~~  231 (256)
T TIGR03309       172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDPRGE  231 (256)
T ss_pred             CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECCCCC
Confidence            4555 449999999999999999975    7999999999865 7999999999999999987553

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0011  Score=56.73  Aligned_cols=60  Identities=20%  Similarity=0.269  Sum_probs=43.1

Q ss_pred             eEEEEccCCCCCCCeEEEEEE-EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC
Q 018779           90 LVDAVVPFMGESITDGTLAKF-LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK  150 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w-~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~  150 (350)
                      ...|-|-+.+.. .=|.|+-. +.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.-.
T Consensus        25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~   85 (131)
T COG0509          25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA   85 (131)
T ss_pred             EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence            344444443332 12444433 4567889999999999999999999999999999876543

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.77  E-value=0.0028  Score=48.25  Aligned_cols=35  Identities=14%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      -.|.||++|+|.++++++||.|..|++|+.++...
T Consensus         3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K   37 (71)
T PRK05889          3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK   37 (71)
T ss_pred             cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            35899999999999999999999999999998654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.56  E-value=0.0078  Score=60.00  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=29.4

Q ss_pred             eecCCCCeEEEEEee-CCCCEeCCCCEEEEEEeC
Q 018779          135 DVASPQAGVIQNLIA-KEGETVEPGAKIAVISKS  167 (350)
Q Consensus       135 ei~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~  167 (350)
                      .|.||++|+|..+.+ .+|+.|..|++|+.|...
T Consensus       273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~  306 (423)
T TIGR01843       273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE  306 (423)
T ss_pred             EEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence            489999999999876 799999999999999754

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=96.47  E-value=0.0051  Score=57.57  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      .|.||++|+|..+.+.+|+.|..|++|+.|.+.+.
T Consensus        90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~  124 (265)
T TIGR00999        90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVADLGA  124 (265)
T ss_pred             EEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCCc
Confidence            47999999999999999999999999999976543

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=96.42  E-value=0.011  Score=55.03  Aligned_cols=69  Identities=12%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             cEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCc
Q 018779          265 ALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKV  343 (350)
Q Consensus       265 Ph~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~G  343 (350)
                      |.+.++.++|+|+|.+.-++        .  ++++.+.++-|+.+|+.++|+|--+++++++++++.+|.+..+-.+++
T Consensus        31 ~~fsiT~~iDiT~l~~~~K~--------~--~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~   99 (219)
T PRK13757         31 CTYNQTVQLDITAFLKTVKK--------N--KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQT   99 (219)
T ss_pred             CceEEEEEEEHHHHHHHHHH--------c--CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCC
Confidence            45999999999999965432        2  578999999999999999999999999999999999999999986553

>PRK06748 hypothetical protein; Validated

Probab=96.31  E-value=0.0073  Score=47.94  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      -|.||..|.|.++++++||.|..|++|+.|++
T Consensus         6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            37899999999999999999999999999998

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=96.05  E-value=0.0099  Score=51.58  Aligned_cols=34  Identities=29%  Similarity=0.533  Sum_probs=32.2

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      ...|.||..|++.++++++||.|+.||+||+|+.
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA  103 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA  103 (140)
T ss_pred             CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence            5679999999999999999999999999999985

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.04  E-value=0.021  Score=55.52  Aligned_cols=58  Identities=26%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEc---CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIET---DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evet---dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      +=+...+++.||.|++||+|++|=.   +....++.||.+|+|.-  ....-.|..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence            4466778999999999999999854   55678899999999854  5566789999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.03  E-value=0.013  Score=42.90  Aligned_cols=33  Identities=33%  Similarity=0.682  Sum_probs=30.2

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .+.||++|+|.++++++|+.|..|++|+.++..
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~   33 (67)
T cd06850           1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM   33 (67)
T ss_pred             CccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence            368999999999999999999999999999753

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=95.98  E-value=0.011  Score=48.55  Aligned_cols=47  Identities=19%  Similarity=0.298  Sum_probs=39.5

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK  150 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~  150 (350)
                      .-|.-.+-.|++||+|++||.|++.+ +-....|-|+.+|+|..|.-.
T Consensus        37 h~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~   83 (101)
T PF13375_consen   37 HIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKR   83 (101)
T ss_pred             cCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeee
Confidence            34566678999999999999999997 456889999999999987543

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.86  E-value=0.019  Score=43.40  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=31.4

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .|.||..|.|.++++++||.|..|++|+.++...
T Consensus         3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k   36 (70)
T PRK08225          3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK   36 (70)
T ss_pred             eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            5789999999999999999999999999998644

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=95.84  E-value=0.025  Score=56.42  Aligned_cols=59  Identities=24%  Similarity=0.434  Sum_probs=47.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      .+=+..++++.||.|++||+|++|=.    +....+|.||.+|+|.  .....-.|..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence            34567889999999999999999854    3344557999999984  46677789999999876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.67  E-value=0.038  Score=53.31  Aligned_cols=56  Identities=23%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEc--CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          107 LAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       107 I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      +.++.++.||.|++||+|++|-.  .....+|.||.+|+|.  .....-.|..|+.|+.|
T Consensus       229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i  286 (287)
T cd06251         229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI  286 (287)
T ss_pred             EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence            45679999999999999999964  2234789999999984  35566678888888876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=95.54  E-value=0.046  Score=54.45  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .+|.||.+|+|.+..+.+|+.|..|.+|+.+-..+
T Consensus       209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~  243 (352)
T COG1566         209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD  243 (352)
T ss_pred             CEEECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence            45899999999999999999999999999886543

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.46  E-value=0.053  Score=53.08  Aligned_cols=59  Identities=22%  Similarity=0.361  Sum_probs=46.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      +=+....++.||.|++||+|++|-.    .....+|.||.+|+|.-  ....-.|..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence            4466788999999999999999864    34567899999999854  33445688888888775

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=95.44  E-value=0.023  Score=54.09  Aligned_cols=43  Identities=30%  Similarity=0.550  Sum_probs=36.0

Q ss_pred             EEEEcCCCCeecCCCeEEEEEcCCe--eceecCCCCeEEEEEeeCCCC
Q 018779          108 AKFLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKEGE  153 (350)
Q Consensus       108 ~~w~v~~Gd~V~~gd~l~evetdKa--~~ei~ap~~G~l~~i~~~eG~  153 (350)
                      -+.+|+|||+|++||+|++   ||-  .+-+.||.+|+|.+|.-.+--
T Consensus        41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~rR   85 (257)
T PF05896_consen   41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGERR   85 (257)
T ss_pred             ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCCCc
Confidence            5889999999999999997   665  466899999999998775443

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=95.41  E-value=0.041  Score=54.22  Aligned_cols=57  Identities=21%  Similarity=0.352  Sum_probs=46.3

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          106 TLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       106 ~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      =+....++.||.|++||+|++|=.    .....+|.||.+|+|.-  ....-.|..|+.|+.|
T Consensus       264 Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       264 GLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL  324 (325)
T ss_pred             eEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence            345688999999999999999964    33567899999999965  5556788999999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PRK07051 hypothetical protein; Validated

Probab=95.41  E-value=0.035  Score=43.35  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=24.9

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIE  128 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~eve  128 (350)
                      .+|+|.+|++++||.|+.||+|++++
T Consensus        54 ~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         54 AAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            68999999999999999999999986

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.98  E-value=0.043  Score=44.20  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=25.8

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            367888888888888888888888888887764

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=94.86  E-value=0.05  Score=46.77  Aligned_cols=35  Identities=17%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ...|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus        61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam   95 (130)
T PRK06549         61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM   95 (130)
T ss_pred             CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            56799999999999999999999999999999864

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=94.75  E-value=0.055  Score=41.52  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=29.2

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEE
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI  127 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~ev  127 (350)
                      .+.++|.-|      .+|+|.++++++||.|..||+|+.|
T Consensus        41 K~~~~v~a~------~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen   41 KMEMEVEAP------VSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             SEEEEEEBS------SSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             ccceEEECC------CCEEEEEEEECCCCEECCCCEEEEC
Confidence            345667777      6899999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=94.73  E-value=0.11  Score=59.08  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=60.2

Q ss_pred             CCceEEEEccCCCCCCCe----------EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeC
Q 018779           87 SGDLVDAVVPFMGESITD----------GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVE  156 (350)
Q Consensus        87 ~~~~~~i~~P~lG~~m~e----------g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~  156 (350)
                      .|....|++-.+|+.-.+          |...++.+++++.+..++.....+.+ -..+|.||..|.|.++++++||.|+
T Consensus      1019 ~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~ 1097 (1143)
T TIGR01235      1019 KGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVN 1097 (1143)
T ss_pred             CCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeC
Confidence            455666777677765333          45666778888877777665544322 2357999999999999999999999


Q ss_pred             CCCEEEEEEeCC
Q 018779          157 PGAKIAVISKSG  168 (350)
Q Consensus       157 vG~~la~i~~~~  168 (350)
                      .|++|++|+...
T Consensus      1098 ~Gd~L~~iEamK 1109 (1143)
T TIGR01235      1098 KGDPLVVLEAMK 1109 (1143)
T ss_pred             CCCEEEEEEecc
Confidence            999999998643

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=94.31  E-value=0.068  Score=52.56  Aligned_cols=41  Identities=32%  Similarity=0.414  Sum_probs=35.5

Q ss_pred             EEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          125 AQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       125 ~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +.||.+  .+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   82 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR   82 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence            344554  68899999999999999999999999999999864

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.28  E-value=0.095  Score=50.55  Aligned_cols=55  Identities=20%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEc--CCeeceecCCCCeEEEEEeeCCCCEeCCCCEE
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKI  161 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~l  161 (350)
                      +=+.+.+++.||.|++||+|++|=.  .....+|.||++|+|.-+..  .-.|..|+.|
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l  287 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPL  287 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCcc
Confidence            3455667777888877888877732  23355677788887754322  2344445443

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=94.20  E-value=0.041  Score=52.20  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=24.7

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .+|.++..|+|.+|++++||.|+.|++|+.|+...
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~   36 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD   36 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred             EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence            46889999999999999999999999999998643

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=94.16  E-value=0.083  Score=46.64  Aligned_cols=36  Identities=22%  Similarity=0.436  Sum_probs=32.5

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ...|.||..|+|.++++++||.|..|++|+.++...
T Consensus        84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK  119 (153)
T PRK05641         84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK  119 (153)
T ss_pred             CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence            356999999999999999999999999999997543

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=93.92  E-value=0.074  Score=46.78  Aligned_cols=46  Identities=26%  Similarity=0.382  Sum_probs=35.0

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeec-eecCCCCeEEEEEe
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLI  148 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-ei~ap~~G~l~~i~  148 (350)
                      -||..+-..+.+||+|.+||.|+-+.|-|-.+ -+.||++|+|.-+.
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            57888889999999999999999999999875 49999999986554

; PDB: 3D4R_D.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=93.90  E-value=0.086  Score=51.22  Aligned_cols=43  Identities=26%  Similarity=0.504  Sum_probs=36.5

Q ss_pred             EEEcCCeeceecCCCC---eEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          126 QIETDKVTIDVASPQA---GVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       126 evetdKa~~ei~ap~~---G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .|+...-...|.++.+   |+|.+|++++||.|+.|++|+.|+...
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~   51 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP   51 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence            4555545667889999   999999999999999999999998653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=93.88  E-value=0.067  Score=51.97  Aligned_cols=36  Identities=14%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .+.|.|+.+|+|.++++++||.|..|++|+.|+...
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~   77 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTN   77 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchH
Confidence            678999999999999999999999999999998643

>COG3608 Predicted deacylase [General function prediction only]

Probab=93.49  E-value=0.17  Score=49.98  Aligned_cols=61  Identities=28%  Similarity=0.501  Sum_probs=47.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEc---CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIET---DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evet---dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      ++=+++.+++.||.|++||.|+.|=+   -+...||.|+.+|+|....-  --.++.|+.+..+..
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~~  326 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVGR  326 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeecc
Confidence            56688999999999999999998865   47899999999999976532  234555666666543

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=93.38  E-value=0.057  Score=51.22  Aligned_cols=28  Identities=21%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ..|.|.+++|++||.|++||+|++++.-
T Consensus         8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~   35 (305)
T PF00529_consen    8 VGGIVTEILVKEGQRVKKGQVLARLDPT   35 (305)
T ss_dssp             S-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred             CCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence            4599999999999999999999999964

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=93.15  E-value=0.18  Score=49.99  Aligned_cols=61  Identities=20%  Similarity=0.366  Sum_probs=45.1

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .+.-+.++.|+....=..-..|+..+ ...|.++.+|.|.++++++||.|+.|++|+.|+..
T Consensus        35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   95 (370)
T PRK11578         35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   95 (370)
T ss_pred             ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            44445555555443333445666553 55899999999999999999999999999999753

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=93.14  E-value=0.16  Score=51.56  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .|.-..++.|+.-..-+....|+.. -.++|.++.+|.|.++++++||.|+.|++|+.|+...
T Consensus        61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~  122 (415)
T PRK11556         61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP  122 (415)
T ss_pred             ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence            3445555666655555567788864 5688999999999999999999999999999998643

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=93.10  E-value=0.25  Score=45.45  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             cccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 018779          263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK  342 (350)
Q Consensus       263 ~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~  342 (350)
                      ..||+....+.|+|.+-..   +|+    .   +++|.++++.|+.+++.++++|.-++.+|...+++.++..+.|..++
T Consensus        27 ~~p~y~i~~~LDvtn~~~~---vk~----~---~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~   96 (219)
T COG4845          27 QYPHYDINLQLDVTNFYGY---VKE----N---GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGE   96 (219)
T ss_pred             ccceEeeeeeeehhHHHHH---HHH----c---CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCC
Confidence            4799999999998766543   442    1   78999999999999999999999999999999999999999999954


Q ss_pred             -ceee
Q 018779          343 -VCDN  346 (350)
Q Consensus       343 -GLi~  346 (350)
                       ++++
T Consensus        97 ~e~Fs  101 (219)
T COG4845          97 TETFS  101 (219)
T ss_pred             CcEEE
Confidence             4544

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=93.10  E-value=0.09  Score=54.04  Aligned_cols=45  Identities=22%  Similarity=0.421  Sum_probs=38.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA  149 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~  149 (350)
                      .|.-.+-+|++||+|+.||+|++-... ..+.+-||.+|+|..|.-
T Consensus        37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            466667899999999999999987643 678899999999999953

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=93.06  E-value=0.17  Score=50.57  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .++.|+....-+....|+..+ ..+|.++.+|+|.++.+++||.|+.|++|+.|+..
T Consensus        40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence            445555444555667777664 67899999999999999999999999999999854

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=93.02  E-value=0.39  Score=51.18  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=32.3

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      -+|.||..|.|.++++++||.|..|++|+.|+...
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK  560 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK  560 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence            36999999999999999999999999999998644

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=92.90  E-value=0.094  Score=50.28  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=28.7

Q ss_pred             EEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          124 IAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       124 l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      -..|+.  -...|.++.+|.| ++++++||.|..|++|+.|+...
T Consensus        14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~   55 (328)
T PF12700_consen   14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD   55 (328)
T ss_dssp             EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred             EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence            345554  4567899999999 99999999999999999998643

...

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=92.90  E-value=0.16  Score=44.74  Aligned_cols=26  Identities=31%  Similarity=0.592  Sum_probs=24.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIE  128 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~eve  128 (350)
                      .+|+|.+|+++.||.|..||+|++|+
T Consensus       130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        130 KSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            68999999999999999999999985

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=92.81  E-value=0.16  Score=48.62  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ...|.+|.+|+|.++++++||.|..|++|+.++..
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~   60 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD   60 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence            56899999999999999999999999999999754

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=92.80  E-value=0.26  Score=39.63  Aligned_cols=28  Identities=32%  Similarity=0.552  Sum_probs=25.9

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      .+|.|..|.+++|+.|.+|++|++|...
T Consensus         6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    6 FDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            5899999999999999999999999853

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=92.71  E-value=0.17  Score=44.75  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=24.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIE  128 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~eve  128 (350)
                      .+|+|.+|+++.||.|+.||+|++|+
T Consensus       131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       131 VAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            68999999999999999999999985

The gene name is accB or fabE.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.51  E-value=0.2  Score=49.88  Aligned_cols=43  Identities=14%  Similarity=0.383  Sum_probs=36.7

Q ss_pred             EEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       126 evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .|..+.....|.++.+|+|.++++++||.|..|++|+.++...
T Consensus        36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~   78 (423)
T TIGR01843        36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD   78 (423)
T ss_pred             EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence            4456666777889999999999999999999999999998654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=92.31  E-value=0.15  Score=49.69  Aligned_cols=35  Identities=17%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      +.|.++.+|.|.++++++||.|+.|++|+.|+..+
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~   82 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPR   82 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence            45999999999999999999999999999998643

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=92.27  E-value=0.13  Score=40.01  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=21.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      +-+.=+.++++.||.|++||+||+|=++.
T Consensus        29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   29 DPAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            33444688999999999999999987654

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.14  E-value=0.24  Score=50.81  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=34.9

Q ss_pred             EEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          127 IETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       127 vetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |..+.-...|.++..|+|.+|+|+|||.|..|++|+.|+...
T Consensus        53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~   94 (457)
T TIGR01000        53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN   94 (457)
T ss_pred             EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence            333334567889999999999999999999999999998643

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=92.12  E-value=0.28  Score=49.01  Aligned_cols=56  Identities=20%  Similarity=0.238  Sum_probs=43.5

Q ss_pred             EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .++.|+.-..-.....|+.+ -..+|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus        42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence            44444433334455677765 367999999999999999999999999999999754

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.08  E-value=0.23  Score=50.23  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             eeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       132 a~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      -...|.++.+|+|.++++++||.|+.|++|+.|+...
T Consensus        57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~   93 (421)
T TIGR03794        57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPE   93 (421)
T ss_pred             ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence            3458999999999999999999999999999998654

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=92.08  E-value=0.14  Score=52.74  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=37.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA  149 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~  149 (350)
                      -|.-.+-+|++||+|++||+|++-... ....+-||.+|+|..|..
T Consensus        38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            355667899999999999999966544 578899999999999954

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=91.64  E-value=0.22  Score=50.06  Aligned_cols=36  Identities=14%  Similarity=0.340  Sum_probs=33.1

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .+.|.++.+|.|.++++++||.|+.|++|+.|+..+
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~   96 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTD   96 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHH
Confidence            788999999999999999999999999999998643

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=91.63  E-value=0.22  Score=48.57  Aligned_cols=35  Identities=20%  Similarity=0.437  Sum_probs=32.6

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .+.|.++..|+|.++++++||.|+.|++|+.|+..
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            56899999999999999999999999999999753

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=91.51  E-value=0.28  Score=50.63  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=26.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      .+|+|.+|++++||.|..||+|++|+.+
T Consensus       141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        141 ASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            6899999999999999999999999864

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=91.42  E-value=0.31  Score=46.66  Aligned_cols=26  Identities=35%  Similarity=0.635  Sum_probs=24.9

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIE  128 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~eve  128 (350)
                      .+|+|.+|++++||.|..||+|++||
T Consensus       248 ~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        248 QSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CCeEEEEEecCCCCEeCCCCEEEEec
Confidence            68999999999999999999999986

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=91.13  E-value=0.38  Score=46.63  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      .++|..|      .+|+|.++++++||.|..|++|++++.+.
T Consensus        45 ~~~~~a~------~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         45 TNEVEAP------AAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             eEEEecC------CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            3456666      78999999999999999999999999765

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=91.08  E-value=0.23  Score=49.32  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             EEEcCCCCeecCCCeEEEEEcCCe--eceecCCCCeEEEEEeeCCCCEe
Q 018779          109 KFLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKEGETV  155 (350)
Q Consensus       109 ~w~v~~Gd~V~~gd~l~evetdKa--~~ei~ap~~G~l~~i~~~eG~~v  155 (350)
                      ..+|++||.|++||+|+|   ||-  -+-+.||.+|+|..|+-.+--.+
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~KRvL   87 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEKRVL   87 (447)
T ss_pred             cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccceee
Confidence            458999999999999998   554  47799999999999876655443

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=90.52  E-value=0.26  Score=50.46  Aligned_cols=43  Identities=23%  Similarity=0.389  Sum_probs=36.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI  148 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~  148 (350)
                      |.-.+-.|++||+|+.||+|++.+ +.....|-||.+|+|.+|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            444567999999999999999984 3468999999999998864

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=90.38  E-value=0.79  Score=44.40  Aligned_cols=40  Identities=15%  Similarity=0.408  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEc--CCeeceecCCCCeEEEE
Q 018779          107 LAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQN  146 (350)
Q Consensus       107 I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~  146 (350)
                      |.+..++.||.|++||+|++|-.  .....++.||.+|+|.-
T Consensus       241 i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~  282 (293)
T cd06255         241 LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIG  282 (293)
T ss_pred             EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEE
Confidence            33445555555555555555532  11123455555555543

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=90.16  E-value=0.35  Score=48.64  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=37.2

Q ss_pred             eEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          123 PIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       123 ~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ....|+.. -.++|.++.+|+|.++.+++||.|+.|++|+.|+..
T Consensus        56 ~~G~v~a~-~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~   99 (397)
T PRK15030         56 LPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   99 (397)
T ss_pred             EEEEEEEE-EEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence            33456543 377899999999999999999999999999999864

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=89.95  E-value=0.29  Score=38.85  Aligned_cols=24  Identities=38%  Similarity=0.508  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEc
Q 018779          106 TLAKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus       106 ~I~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      .=++|++++||.|++||+|++++-
T Consensus        45 ~~v~~~~~dG~~v~~g~~i~~i~G   68 (88)
T PF02749_consen   45 LEVEWLVKDGDRVEPGDVILEIEG   68 (88)
T ss_dssp             EEEEESS-TT-EEETTCEEEEEEE
T ss_pred             EEEEEEeCCCCCccCCcEEEEEEe
Confidence            345699999999999999999984

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=89.93  E-value=0.26  Score=43.67  Aligned_cols=58  Identities=21%  Similarity=0.345  Sum_probs=43.9

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE  153 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~  153 (350)
                      +++.-+.||+    +..++ +-++|-.|.+||.++-||+=|+.-||.+|.+|.|.+|.-+-.|
T Consensus        72 t~~A~~~LGd----vv~ve-LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E  129 (172)
T KOG3373|consen   72 TDFAQEHLGD----VVYVE-LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE  129 (172)
T ss_pred             hhhhhhhcCc----eEEEE-cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence            3444555654    22222 3467888999999999999999999999999999998765544

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=89.52  E-value=0.34  Score=49.03  Aligned_cols=28  Identities=18%  Similarity=0.298  Sum_probs=26.3

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ..|.|.+.+|++||.|++||+|+++++.
T Consensus        65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~   92 (421)
T TIGR03794        65 GSGVVIDLDVEVGDQVKKGQVVARLFQP   92 (421)
T ss_pred             CCeEEEEEECCCcCEECCCCEEEEECcH
Confidence            5699999999999999999999999974

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=89.48  E-value=1.1  Score=42.86  Aligned_cols=60  Identities=32%  Similarity=0.467  Sum_probs=48.4

Q ss_pred             EEEEEEEcCCCCeecCCCeE--EEEEc--CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          105 GTLAKFLKQPGDRVEMDEPI--AQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l--~evet--dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      +=+..+.++.||.|++||+|  .++-.  +-...++.||.+|+|  +...+.-.|..|+.|+.+..
T Consensus       228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~  291 (292)
T PF04952_consen  228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK  291 (292)
T ss_dssp             SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred             cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence            44568999999999999999  54432  233468999999998  56888999999999998863

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=89.15  E-value=0.79  Score=34.41  Aligned_cols=33  Identities=36%  Similarity=0.597  Sum_probs=28.0

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEE
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI  127 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~ev  127 (350)
                      +..++.-|      .+|+|++|+++.|+.|..|+.|++|
T Consensus        41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence            34556666      6899999999999999999999875

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=89.05  E-value=0.75  Score=46.62  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=37.9

Q ss_pred             CeEEEEEcCC-eeceecCCCCeEEEEEe-eCCCCEeCCCCEEEEEEeC
Q 018779          122 EPIAQIETDK-VTIDVASPQAGVIQNLI-AKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       122 d~l~evetdK-a~~ei~ap~~G~l~~i~-~~eG~~v~vG~~la~i~~~  167 (350)
                      +....|+-|. -...|.++++|+|.+++ +.+||.|+.|++|+.|+..
T Consensus       111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp  158 (409)
T PRK09783        111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP  158 (409)
T ss_pred             EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence            3455666543 35689999999999998 9999999999999999854

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=88.30  E-value=1.1  Score=42.49  Aligned_cols=44  Identities=23%  Similarity=0.496  Sum_probs=35.6

Q ss_pred             CeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          122 EPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       122 d~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      .....++. .-..++.++..|.|.++++++||.|+.|++|+.++.
T Consensus        56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            33444444 333478888999999999999999999999999987

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=88.18  E-value=0.46  Score=48.76  Aligned_cols=30  Identities=3%  Similarity=0.096  Sum_probs=26.6

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa  132 (350)
                      ..|.|.+++|++||.|++||+|++++..-.
T Consensus        66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~   95 (457)
T TIGR01000        66 SNNAIKENYLKENKFVKKGDLLVVYDNGNE   95 (457)
T ss_pred             CCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence            459999999999999999999999987533

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=88.05  E-value=0.71  Score=49.12  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..|.||..|.|.++++++||.|..|++|+.|+...
T Consensus       518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK  552 (582)
T TIGR01108       518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK  552 (582)
T ss_pred             CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            47999999999999999999999999999998644

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=88.00  E-value=0.8  Score=46.78  Aligned_cols=29  Identities=31%  Similarity=0.682  Sum_probs=26.9

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      .+|+|.++++++||.|..||+|++|+++.
T Consensus        94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~~  122 (418)
T PTZ00144         94 ASGVITKIFAEEGDTVEVGAPLSEIDTGG  122 (418)
T ss_pred             CCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence            78999999999999999999999998653

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=87.93  E-value=0.45  Score=51.58  Aligned_cols=43  Identities=23%  Similarity=0.481  Sum_probs=35.6

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI  148 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~  148 (350)
                      |.-.+-+|++||+|.+||+|++-+ .-..+.|-||.+|+|..|.
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            555567999999999999999764 2357899999999998864

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=87.28  E-value=1.3  Score=31.55  Aligned_cols=31  Identities=42%  Similarity=0.619  Sum_probs=26.0

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI  127 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~ev  127 (350)
                      ..+..|      ..|++.++++++|+.|..|++|+++
T Consensus        44 ~~i~a~------~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          44 VEVEAP------AAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEEECC------CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            455555      5688999999999999999999875

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=86.85  E-value=1.9  Score=46.06  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ..+|.||..|+|.++.+++||.|..|++|+.|+..
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam  556 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM  556 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            36799999999999999999999999999999854

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=86.34  E-value=0.96  Score=48.22  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=32.6

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..+|.||..|.|.++++++||.|..|++|+.|+...
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK  559 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK  559 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence            457999999999999999999999999999997543

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.28  E-value=1.4  Score=38.15  Aligned_cols=44  Identities=25%  Similarity=0.463  Sum_probs=38.6

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeece-ecCCCCeEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQN  146 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~e-i~ap~~G~l~~  146 (350)
                      -||-++--....|++|.+||+++-|.|-|..+- +.+|.+|++.=
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvy  142 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVY  142 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEE
Confidence            689999999999999999999999999998765 79999998754

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=86.14  E-value=1.3  Score=45.18  Aligned_cols=29  Identities=24%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      .+|+|.++++++||.|..|++|++||++.
T Consensus        52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704         52 AAGVLSEILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             CCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            78999999999999999999999999764

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=86.13  E-value=0.71  Score=43.89  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=26.0

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      ..|.|.+++|++||.|++||+|+++++
T Consensus        73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          73 VAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             cccEEEEEEccCCCeecCCCEEEEECC
Confidence            679999999999999999999999998

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=84.31  E-value=1.1  Score=44.75  Aligned_cols=28  Identities=25%  Similarity=0.497  Sum_probs=26.5

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ..|+|.+.+|++||+|+.|+.|+.|++.
T Consensus       122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen  122 ASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             CcceeeEEecCCCCcccCCceeEEecCC
Confidence            5799999999999999999999999986

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=84.18  E-value=0.82  Score=47.58  Aligned_cols=39  Identities=23%  Similarity=0.466  Sum_probs=35.5

Q ss_pred             EEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe
Q 018779          108 AKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI  148 (350)
Q Consensus       108 ~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~  148 (350)
                      ...+|++||+|.+||+|.+=+-  ...-+-||.+|+|.+|.
T Consensus        45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            5669999999999999998875  78899999999999987

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=84.06  E-value=1.3  Score=44.97  Aligned_cols=28  Identities=36%  Similarity=0.548  Sum_probs=26.6

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      .+|+|.+|++++||.|..|++|++|+.+
T Consensus        50 ~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        50 ADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            7899999999999999999999999865

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=83.89  E-value=1.9  Score=39.12  Aligned_cols=52  Identities=21%  Similarity=0.383  Sum_probs=40.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEE
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI  161 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~l  161 (350)
                      ..|..| +++|+.+++||.+.-++-. .++++--|.+   .++.+++|+.|..|+.|
T Consensus       130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tl  181 (189)
T TIGR00164       130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETV  181 (189)
T ss_pred             cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEE
Confidence            455444 5899999999999999977 5566555554   27789999999999955

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=83.59  E-value=1  Score=38.46  Aligned_cols=28  Identities=14%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      +|+=-++++++||+|++||+|+++.-+.
T Consensus        78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~  105 (124)
T cd00210          78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA  105 (124)
T ss_pred             CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence            4666899999999999999999987543

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=83.50  E-value=2  Score=38.12  Aligned_cols=61  Identities=18%  Similarity=0.353  Sum_probs=37.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeece--------ecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTID--------VASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~e--------i~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      +|+--+-++++||+|++||+|+++.-|+..--        |-+-.+-+-.-+....+-.+..|+.+..+
T Consensus        85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~  153 (156)
T COG2190          85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV  153 (156)
T ss_pred             CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence            47777889999999999999999987643211        22222222122223333367777777654

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=83.20  E-value=1.5  Score=46.08  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=30.8

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      -.+.||..|+|..+.+++|++|..|++|++++.
T Consensus       576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA  608 (645)
T COG4770         576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA  608 (645)
T ss_pred             CceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence            348999999999999999999999999999985

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=83.20  E-value=1.5  Score=44.49  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=27.7

Q ss_pred             CCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       139 p~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      -.+|.|.++++++||.|..|++|+.|+++-.
T Consensus        14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa   44 (404)
T COG0508          14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKA   44 (404)
T ss_pred             cceEEEEEEecCCCCeecCCCeeEEEEcCce
Confidence            4589999999999999999999999997543

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=83.09  E-value=1.5  Score=44.64  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             CCCeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779          101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDKV  132 (350)
Q Consensus       101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa  132 (350)
                      ...+|+|.+|++++||.|..|++|++|+++..
T Consensus        46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~   77 (416)
T PLN02528         46 SRYKGKVAQINFSPGDIVKVGETLLKIMVEDS   77 (416)
T ss_pred             cCCCEEEEEEEeCCCCEeCCCCEEEEEeccCC
Confidence            34789999999999999999999999987653

>PRK12999 pyruvate carboxylase; Reviewed

Probab=83.03  E-value=2.9  Score=47.97  Aligned_cols=34  Identities=32%  Similarity=0.567  Sum_probs=31.8

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .+|.||..|+|.++++++||.|+.|++|+.++..
T Consensus      1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leam 1110 (1146)
T PRK12999       1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAM 1110 (1146)
T ss_pred             ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence            5699999999999999999999999999999863

>TIGR02712 urea_carbox urea carboxylase

Probab=82.66  E-value=1.7  Score=50.16  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.3

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ...|.||..|.|.++++++||.|+.|++|+.|+...
T Consensus      1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712      1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred             CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence            345899999999999999999999999999997643

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=82.57  E-value=1.1  Score=38.01  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=23.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      +|+=-++++++||+|++||+|+++.-+.
T Consensus        78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~  105 (121)
T TIGR00830        78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA  105 (121)
T ss_pred             CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence            4556789999999999999999987553

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=82.33  E-value=2.4  Score=39.01  Aligned_cols=55  Identities=24%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCC-EEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGA-KIAV  163 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~-~la~  163 (350)
                      .+.|..| +++||.+++||.+..++-. .++++--|.+   .++.+++||.|..|+ +|+.
T Consensus       149 ~r~I~~~-~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~  204 (206)
T PRK05305        149 ARRIVCY-VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR  204 (206)
T ss_pred             ccEEEEe-CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence            3455554 6899999999999999977 4555555544   278999999999998 5554

>PRK12784 hypothetical protein; Provisional

Probab=82.28  E-value=2.2  Score=33.40  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      +|.||+-|+|.++++++++.|..=++|+.|..-+.
T Consensus         7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg   41 (84)
T PRK12784          7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG   41 (84)
T ss_pred             hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence            58999999999999999999999999999987544

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=81.95  E-value=2.2  Score=38.31  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=23.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      +|+=-+++|++||+|++||+|+++.-+.
T Consensus       100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~  127 (169)
T PRK09439        100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL  127 (169)
T ss_pred             CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence            4666789999999999999999998654

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=81.77  E-value=0.94  Score=39.02  Aligned_cols=29  Identities=24%  Similarity=0.538  Sum_probs=22.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV  132 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa  132 (350)
                      +|+--+|++++||+|++||+|+++.-++.
T Consensus        82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i  110 (132)
T PF00358_consen   82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI  110 (132)
T ss_dssp             TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred             CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence            46668999999999999999999986543

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		1e-21
1ghj_A	79	Solution Structure Of The Lipoyl Domain Of The 2- O		8e-10
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		1e-08
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		2e-06
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		4e-06
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		4e-06
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		7e-06
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		3e-05
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		8e-05
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		9e-05
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		9e-05
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		1e-04
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		3e-04
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		3e-04

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 62/79 (78%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
           E+RVPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG M
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63
Query: 301 SGFVKAAVSALQHQPVVNA 319
           S +VKA V AL+  P VNA
Sbjct: 64  SFYVKAVVEALKRYPEVNA 82

>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           +D   P   ESI DGT+A + K+PG+ V+ DE I  IETDKV ++V +   GVI  ++  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 151 EGETVEPGAKIAVISKSG 168
           EG+TV  G  +  +++ G
Sbjct: 62  EGDTVLSGELLGKLTEGG 79

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           VD +VP + ES+ D T+A + K+PGD V  DE + +IETDKV ++V +   G++  ++  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62
Query: 151 EGETV 155
           EG TV
Sbjct: 63  EGTTV 67

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           +P +GE +T+G + ++  + GD VE D+ + ++ TDKVT+ + SP  G I  ++ +EG+ 
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 155 VEPGAKIAVIS 165
           V  G+ +  I 
Sbjct: 66  VPVGSTLLQID 76

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 237 PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK 296
           P+ RE+   M+ +R+ +A  +  S++T   +T  +E D+T L+  R  +K    EK G+K
Sbjct: 13  PETREK---MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIK 68
Query: 297 LGLMSGFVKAAVSALQHQPVVN 318
           L  +   VKA VSAL+  PV+N
Sbjct: 69  LTFLPYVVKALVSALREYPVLN 90

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 237 PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK 296
           P+ RE+   M+ +R+ +A  +  S++T   +T  +E D+T L+  R  +K    EK G+K
Sbjct: 197 PETREK---MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIK 252
Query: 297 LGLMSGFVKAAVSALQHQPVVN 318
           L  +   VKA VSAL+  PV+N
Sbjct: 253 LTFLPYVVKALVSALREYPVLN 274

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           +P +GE I +G + K+  +PGD V  D+ + +++ DK  +++ SP  G +  ++  EG  
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 155 VEPGAKIAVISKSG 168
              G  +  +   G
Sbjct: 66  ATVGQTLITLDAPG 79

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
           ++ +P+  +RK +A  +  S+          EVD T L++ R+  KD+F ++ G  L   
Sbjct: 18  DKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYF 77
Query: 301 SGFVKAAVSALQHQPVVNA 319
           + F+KA   AL+  P +N+
Sbjct: 78  AFFIKAVAQALKEFPQLNS 96

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 233 PQLPPKDRER-----RVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKD 287
           P +PP D  +      VPMTRL +  AT L  S      +T F   D+T L   R   K 
Sbjct: 2   PPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK- 60
Query: 288 AFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319
           A  EK GVKL ++   +KA    L+  P  N+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNS 92

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 233 PQLPPKDRER-----RVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKD 287
           P +PP D  +      VPMTRL +  AT L  S      +T F   D+T L   R   K 
Sbjct: 2   PPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK- 60
Query: 288 AFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319
           A  EK GVKL ++   +KA    L+  P  N+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNS 92

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 233 PQLPPKDRER-----RVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKD 287
           P +PP D  +      VPMTRL +  AT L  S      +T F   D+T L   R   K 
Sbjct: 2   PPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK- 60
Query: 288 AFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319
           A  EK GVKL ++   +KA    L+  P  N+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNS 92

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 94  VVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG- 152
           ++P +  ++ +G + K+LK+ G+ V   + + +IETDK  + + +   G++  ++ +EG 
Sbjct: 11  LMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS 70
Query: 153 ETVEPGAKIAVISKSGE 169
           + +  G+ I +I + GE
Sbjct: 71  KNIRLGSLIGLIVEEGE 87

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 233 PQLPPKDRER-----RVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKD 287
           P +PP D  +      VPMTRL +  AT L  S      +T F   D+T L   R   K 
Sbjct: 2   PPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK- 60
Query: 288 AFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319
           A  +K GVKL ++   +KA    L+  P  N+
Sbjct: 61  AVAKKAGVKLTVLPLLLKACAYLLKELPDFNS 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	7e-80
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	3e-63
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	4e-58
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	9e-46
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	2e-38
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	9e-34
2ii3_A	262	Lipoamide acyltransferase component of branched-C	2e-32
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	7e-30
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	4e-29
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	3e-28
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	7e-26
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	1e-22
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	5e-22
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	5e-16
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	1e-14
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	3e-14
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	2e-13
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	8e-13
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	3e-12
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	3e-12
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	8e-11
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	1e-10
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	2e-10
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	3e-09
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	1e-08
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	3e-07
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	2e-06
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	2e-06
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	2e-06
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	2e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-05
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	4e-06
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	7e-06
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	2e-05
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	3e-05
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	3e-05
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	4e-05
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  249 bits (638), Expect = 7e-80
 Identities = 64/299 (21%), Positives = 113/299 (37%), Gaps = 48/299 (16%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
            +  +P +GE I +G + K+  +PGD V  D+ + +++ DK  +++ SP  G +  ++  
Sbjct: 3   FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 62

Query: 151 EGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDK- 209
           EG     G  +  +   G         E+  A+     E  S E++           +  
Sbjct: 63  EGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAE 122

Query: 210 ---------TPS-----------------------------------EPPPTAKKPTSPP 225
                     PS                                      P         
Sbjct: 123 AGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKA 182

Query: 226 SKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDY 285
           +   A       +  E R  M+ +R+ +A  +  S++T   +T  +E D+T L+  R  +
Sbjct: 183 APAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKF 242

Query: 286 KDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKK 342
           K     + G+KL  +   VKA VSAL+  PV+N  ID +  +II + Y +I  A  T +
Sbjct: 243 KAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDR 300

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  200 bits (511), Expect = 3e-63
 Identities = 59/103 (57%), Positives = 79/103 (76%)

Query: 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGL 299
            E+RVPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG 
Sbjct: 3   SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62

Query: 300 MSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           MS +VKA V AL+  P VNA IDGDD++Y +Y D+S AV T +
Sbjct: 63  MSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPR 105

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  187 bits (478), Expect = 4e-58
 Identities = 33/117 (28%), Positives = 55/117 (47%)

Query: 226 SKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDY 285
            K     P +     ++ +P+  +RK +A  +  S+          EVD T L++ R+  
Sbjct: 3   LKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAV 62

Query: 286 KDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           KD+F ++ G  L   + F+KA   AL+  P +N+   GD II    I+IS A+    
Sbjct: 63  KDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGD 119

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  154 bits (392), Expect = 9e-46
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGL 299
           RE  + M  LR+ +  ++  ++      T   EVD+T+++ +    K         K+ +
Sbjct: 5   REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-----ARNRKVTV 59

Query: 300 MSGFVKAAVSALQHQPVVNAVIDGDD--IIYRDYIDISFAVGTKK 342
                +   S L+  P +NA+ D      I + Y +I  AV T  
Sbjct: 60  TGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPD 104

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  136 bits (345), Expect = 2e-38
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 230 ASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAF 289
            +  +          P+  +  R+A ++  S           EV    L++LR  +    
Sbjct: 3   LAAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-- 60

Query: 290 LEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID----GDDIIYRDYIDISFAVGTKK 342
                 ++   +  ++  V AL+H  ++N+       G  +     + + F   T++
Sbjct: 61  ---AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATER 114

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  123 bits (312), Expect = 9e-34
 Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 233 PQLPPKD-----RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKD 287
           P +PP D         VPMTRL +  AT L  S      +T F   D+T L   R   K 
Sbjct: 2   PPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKA 61

Query: 288 AFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKK 342
              EK GVKL ++   +KA    L+  P  N+ +   G  +I + Y+ I FAV T  
Sbjct: 62  VA-EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPD 117

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  120 bits (304), Expect = 2e-32
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 210 TPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTT 269
            P  P P  +    P SKP           ++R  P+    K +   +  +         
Sbjct: 6   MPPPPKPKDRTIPIPISKPPVFI------GKDRTEPVKGFHKAMVKTMSAALKI-PHFGY 58

Query: 270 FNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDII 327
            +EVD+T L+KLR + K       G+KL  M  F+KAA   L   P++NA +D    +I 
Sbjct: 59  CDEVDLTELVKLREELKPIA-FARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNIT 117

Query: 328 YRDYIDISFAVGTKK 342
           Y+   +I  A+ T++
Sbjct: 118 YKASHNIGIAMDTEQ 132

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score =  108 bits (272), Expect = 7e-30
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           +D   P   ESI DGT+A + K+PG+ V+ DE I  IETDKV ++V +   GVI  ++  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 151 EGETVEPGAKIAVISKSG 168
           EG+TV  G  +  +++ G
Sbjct: 62  EGDTVLSGELLGKLTEGG 79

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score =  106 bits (267), Expect = 4e-29
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           VD +VP + ES+ D T+A + K+PGD V  DE + +IETDKV ++V +   G++  ++  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62

Query: 151 EGETVEPGAKIAVIS 165
           EG TV     +  + 
Sbjct: 63  EGTTVTSRQILGRLR 77

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  102 bits (257), Expect = 7e-26
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 230 ASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAF 289
                  P      +P++ +R+ +A RL  S+ T        +V+M  ++ +R +     
Sbjct: 1   GPGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKIL 60

Query: 290 LEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGT 340
             +   K+ +    +KA+  A    P  N+      I     +D+S AV T
Sbjct: 61  --EGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVST 109

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 89.2 bits (222), Expect = 1e-22
 Identities = 24/70 (34%), Positives = 44/70 (62%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           +P +GE +T+G + ++  + GD VE D+ + ++ TDKVT+ + SP  G I  ++ +EG+ 
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65

Query: 155 VEPGAKIAVI 164
           V  G+ +  I
Sbjct: 66  VPVGSTLLQI 75

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 88.1 bits (219), Expect = 5e-22
 Identities = 19/91 (20%), Positives = 39/91 (42%)

Query: 88  GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL 147
           G +V   +  +GE I + T+ ++  + GD V   + I ++++DK ++ + S   GVI+ L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 148 IAKEGETVEPGAKIAVISKSGEGVAQAASAE 178
                +    G  +  I        +     
Sbjct: 62  YYNLDDIAYVGKPLVDIETEALKDLEHHHHH 92

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 72.9 bits (179), Expect = 5e-16
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 78  SRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVA 137
                  S     +  ++P +  ++T GT+ ++ K+ G+++   + +A+IETDK TI   
Sbjct: 15  ENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFE 74

Query: 138 SPQAGVIQNLIAKEG-ETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEE 189
             + G +  ++  EG   V  G  + +I +    ++  A            + 
Sbjct: 75  VQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQV 127

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKI 161
             GT+A++ K+ GD++   + IA++ETDK T+   S +   +  ++  EG   V  GA I
Sbjct: 20  QAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAII 79

Query: 162 AVISKSGEGVAQAASAEKAAAQPPPAEEKPSA 193
            +     E +    + +        A    S 
Sbjct: 80  CITVGKPEDI---EAFKNYTLDSSAASGPSSG 108

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKI 161
            +G + K+LK+ G+ V   + + +IETDK  + + +   G++  ++ +EG + +  G+ I
Sbjct: 20  EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLI 79

Query: 162 AVISKSGEGVAQAASAEKA 180
            +I + GE     +     
Sbjct: 80  GLIVEEGEDWKHVSGPSSG 98

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           G L ++  + G  VE     A++E  K+ + +   + G ++  I + G  +E G  +A +
Sbjct: 14  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARL 72

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 62.8 bits (153), Expect = 8e-13
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 73  GSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132
           GS   S + +F  ++        P +  S + G L ++  + G  VE     A++E  K+
Sbjct: 1   GSSGSSGTCVFEKEN-------DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKM 53

Query: 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
            + +   + G ++  I + G  +E G  +A +
Sbjct: 54  IMTLNVQERGRVK-YIKRPGAVLEAGCVVARL 84

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKI 161
           T GT+ ++ K+ G+++   + +A+IETD  TI     + G +  ++  EG   V  G  +
Sbjct: 18  TMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPL 77

Query: 162 AVISKSGEGV 171
            +I +    +
Sbjct: 78  CIIVEKEADI 87

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 19/69 (27%), Positives = 39/69 (56%)

Query: 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170
           + + GD+V  ++ +  +E DK +++V +P AGV++ L    G+ V+ G+ I +    G  
Sbjct: 17  MVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAA 76

Query: 171 VAQAASAEK 179
            A A + ++
Sbjct: 77  PAAAPAKQE 85

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170
             GD + +D+ +  +ETDK T+DV +  AGV++ +  K G+ +  G  I V+   G  
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTA 81

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170
           + + GD+V  ++ +  +E DK +++V +P AGV++ L    G+ V+ G+ I +    G  
Sbjct: 21  MVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAA 80

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 15/58 (25%), Positives = 36/58 (62%)

Query: 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170
           + GD +E+++ +  +E+ K +++V SP+AGV++++  K G+ ++ G  I  +  +   
Sbjct: 21  KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 71   QKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITD------------GTLAKFLKQPGDRV 118
            Q G      +RL    + +L  +      +                G   K +   GD V
Sbjct: 1130 QGGEKADEFARLIQVANAELKKSGDDKPQDVEEYPDDAELLYSEYTGRFWKPVAAVGDHV 1189

Query: 119  EMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
            E  + +  IE  K  + V + ++G +  ++ K G+ VE G  +AVI
Sbjct: 1190 EAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 18/65 (27%), Positives = 38/65 (58%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           G L K   + GD++E  + +A +E+ K+ I + + ++G+++ +  KEG+ V  G  +  +
Sbjct: 8   GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67

Query: 165 SKSGE 169
           S S +
Sbjct: 68  SNSTQ 72

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 13/77 (16%), Positives = 32/77 (41%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           GT+ K   + GD+V+  + +  +   K+   + SP+ G ++ +  +EG        +   
Sbjct: 23  GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEF 82

Query: 165 SKSGEGVAQAASAEKAA 181
            +      ++ S   + 
Sbjct: 83  EEEESDKRESESGPSSG 99

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 36/60 (60%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           G + + L + GDRV + + +  +E  K+  ++ SP+ GV++ ++ KEGE V+ G  +  +
Sbjct: 14  GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 33/65 (50%)

Query: 105  GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
            G++ +     G+ V+ ++P+   E  K+   + +P  GVI+ +    G+T+  G  +  I
Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEI 1145

Query: 165  SKSGE 169
             K+ +
Sbjct: 1146 EKATD 1150

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           G +       G +V   +P+  +   K+   V SP  G ++ +   +  T+E    I  I
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           GT++K L + GD V+  + +  +E  K+  ++ +P  G ++ ++ KE + V+ G  +  I
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 4/98 (4%)

Query: 144 IQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAA 203
           ++NL  +  ET  P         + E V+  +      A      E     K       A
Sbjct: 14  LENLYFQGEETAVPENS----GANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVA 69

Query: 204 PAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRE 241
            A +  +P+       +     S     E         
Sbjct: 70  TASETASPASNEAATTETAEAASAAKPEEKASEVVAET 107

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 8/77 (10%), Positives = 17/77 (22%)

Query: 169 EGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKP 228
           E +                 E  S E +   +EA    + +   E      +  +  S+ 
Sbjct: 15  ENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASET 74

Query: 229 MASEPQLPPKDRERRVP 245
            +               
Sbjct: 75  ASPASNEAATTETAEAA 91

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 268 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDII 327
           +  +++D+T L K   D    F              +     A+     +   I  D++I
Sbjct: 29  SLTSKIDITTLKKSLDDSAYKFY----------PVMIYLIAQAVNQFDELRMAIKDDELI 78

Query: 328 YRDYIDISFAVGTK 341
             D +D  F V  +
Sbjct: 79  VWDSVDPQFTVFHQ 92

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 10/74 (13%)

Query: 268 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDII 327
               ++D+T  +K         ++K+  K      F+      +   P     +   +++
Sbjct: 34  NQTVQLDITAFLK--------TVKKNKHKFYPA--FIHILARLMNAHPEFRMAMKDGELV 83

Query: 328 YRDYIDISFAVGTK 341
             D +   + V  +
Sbjct: 84  IWDSVHPCYTVFHE 97

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           G +     +PGD V   + I  IE  K+   + + + G ++++  + G+TV  G  +  +
Sbjct: 34  GVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 105  GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
            G +++     G  V   + +  IE  K+   + + + G I  ++ K G+ ++    +AV 
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVY 1163

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           G + K   + G  V+  + +  IE  K+   + + + GV+  + A  G ++     I   
Sbjct: 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 13/80 (16%)

Query: 272 EVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDD-IIYRD 330
           EV+     +          +  G    L   ++ A + A    P     ID D  ++  D
Sbjct: 35  EVECGGARQ--------RAKAAGQSFFLH--YLYAVLRAANEIPEFRYRIDPDGRVVLYD 84

Query: 331 YIDISFAVGTKKVCDNSFNG 350
            ID+   +  K+  +  F  
Sbjct: 85  TIDMLSPIKIKE--NGKFFT 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 24/214 (11%), Positives = 54/214 (25%), Gaps = 63/214 (29%)

Query: 189 EKPSAEKQT----------PESEAAPAVKD--------------KTPSEPPPTAKKPTSP 224
               A   T           E      V++                  +P    +     
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 225 PSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQN--------------------TF 264
             +           +  R  P  +LR+     L+ ++N                    ++
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 265 ALLTTFN--------------EVDMTNLMKL--RSDYKDAFLEKHGVKLGLMSGFVKAAV 308
            +    +              E  +  L KL  + D        H   + L    ++A +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 309 SAL-QHQPVVNAVIDGDDIIYRDYIDISFAVGTK 341
             L + +P  N ++   ++      + +F +  K
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCK 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	99.96
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	99.95
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	99.94
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	99.94
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	99.94
2ii3_A	262	Lipoamide acyltransferase component of branched-C	99.93
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	99.93
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.84
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.83
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.83
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.83
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.82
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.78
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	99.78
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.78
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	99.77
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.76
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.75
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	99.75
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.74
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.72
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.7
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.67
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.58
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.47
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.45
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.43
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.41
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.38
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.35
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.34
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.33
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.25
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.19
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.17
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.16
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.98
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.92
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.87
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.84
1hpc_A	131	H protein of the glycine cleavage system; transit	98.43
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.42
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.42
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.16
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.1
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.09
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	98.05
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.84
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.8
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.69
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.62
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.49
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.42
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.86
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	96.79
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.78
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	96.58
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.45
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.35
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.31
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	96.1
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	95.84
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.69
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	95.35
2qj8_A	332	MLR6093 protein; structural genomics, joint center	95.35
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	95.28
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	95.09
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	95.02
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	94.86
2xha_A	193	NUSG, transcription antitermination protein NUSG;	94.82
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	94.71
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	94.65
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	94.16
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	94.1
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	93.87
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	93.85
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	93.55
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	93.05
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	92.99
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	92.93
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	92.85
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	92.79
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	92.72
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	92.39
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	92.38
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	92.19
2xha_A	193	NUSG, transcription antitermination protein NUSG;	92.11
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	92.07
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	91.42
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	90.49
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	90.27
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	88.6
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	88.53
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	85.27
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	85.1
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	84.96
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	84.44
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	83.9
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	82.06

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=2.4e-52  Score=418.89  Aligned_cols=259  Identities=24%  Similarity=0.365  Sum_probs=15.1

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|.+|++|+.|+.++
T Consensus         1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (428)
T 3dva_I            1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   80 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998755


Q ss_pred             Ccccccc--c--cc---cccC-CCCCC----CCCC--C--C-cCCCCCcccCcccccC-----------CCCCCCCCCCC
Q 018779          169 EGVAQAA--S--AE---KAAA-QPPPA----EEKP--S--A-EKQTPESEAAPAVKDK-----------TPSEPPPTAKK  220 (350)
Q Consensus       169 ~~~~~~~--p--~~---~~~~-~~~~~----~~~~--~--~-~~~~~~~~asP~vr~~-----------~~s~~~~~~~~  220 (350)
                      +......  +  ..   +.+. .+++.    ..+.  .  . ......+.++|++|++           .++|+.+...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k  160 (428)
T 3dva_I           81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK  160 (428)
T ss_dssp             -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred             ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence            4321110  0  00   0000 00000    0000  0  0 0111235789999875           35676665433


Q ss_pred             CCCC---------CCCCC----CCCCCC----CCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHH
Q 018779          221 PTSP---------PSKPM----ASEPQL----PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS  283 (350)
Q Consensus       221 ~~~~---------~~~~~----~~~~~~----~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~  283 (350)
                      .+..         .+...    ...+..    ......+++||++|||+||++|++||+++||||++.|||||+|+++|+
T Consensus       161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk  240 (428)
T 3dva_I          161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK  240 (428)
T ss_dssp             TTTTTTSCC-----------------------------------------------------------------------
T ss_pred             HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence            2210         00000    000000    011235789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEeecCCceeecC
Q 018779          284 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       284 ~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      ++|+.+ ++.|+|+||++||+||+++||++||.||++|++  ++|+++++|||||||+|++||++|.
T Consensus       241 ~~~~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPv  306 (428)
T 3dva_I          241 KFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPV  306 (428)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HhhhhH-hhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEee
Confidence            999764 356999999999999999999999999999998  7899999999999999999999874

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=99.96  E-value=4.8e-29  Score=234.43  Aligned_cols=111  Identities=28%  Similarity=0.430  Sum_probs=105.3

Q ss_pred             CCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcc
Q 018779          238 KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV  317 (350)
Q Consensus       238 ~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~l  317 (350)
                      ...++++||++|||+||++|++||+++||||++.|||+|+|+++|+++|+.+.++.|.|+||++||+||+++||++||+|
T Consensus        15 ~~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~   94 (256)
T 3mae_A           15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL   94 (256)
T ss_dssp             CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTT
T ss_pred             CCCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHh
Confidence            34568899999999999999999999999999999999999999999998776667999999999999999999999999


Q ss_pred             eeEEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779          318 NAVIDGDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       318 Na~~d~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      |++|++++|+++++|||||||+|++||++|.
T Consensus        95 Na~~~~~~i~~~~~vnigiAV~t~~GL~vPv  125 (256)
T 3mae_A           95 NSTWAGDKIIEHANINISIAIAAGDLLYVPV  125 (256)
T ss_dssp             SEEEETTEEEECSSCCEEECCCCTTSCCCCE
T ss_pred             hhEEecCEEEEcCcEEEEeEEEcCCceEEEE
Confidence            9999999999999999999999999999873

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=99.95  E-value=4.9e-28  Score=224.77  Aligned_cols=108  Identities=55%  Similarity=0.873  Sum_probs=102.9

Q ss_pred             cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779          241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV  320 (350)
Q Consensus       241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~  320 (350)
                      ++++||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.++.|.|+||++|++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            45689999999999999999999999999999999999999999998776667999999999999999999999999999


Q ss_pred             EeCCeEEEcCCccEEEEeecCCceeecC
Q 018779          321 IDGDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       321 ~d~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      |++++|++++++||||||+|++||++|.
T Consensus        84 ~~~~~i~~~~~v~igiAV~~~~GL~vPv  111 (233)
T 1scz_A           84 IDGDDVVYHNYFDVSMAVSTPRGLVTPV  111 (233)
T ss_dssp             EETTEEECCSSCCEEECEEETTEEECCE
T ss_pred             EeCCEEEEeCceeEEEEEEcCCcEEEEE
Confidence            9999999999999999999999999973

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=99.94  E-value=6.9e-27  Score=219.06  Aligned_cols=100  Identities=17%  Similarity=0.237  Sum_probs=94.9

Q ss_pred             ceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEE
Q 018779          242 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI  321 (350)
Q Consensus       242 ~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~  321 (350)
                      ++ ||++|||+||++|++||+++||||++.|||+|+|+++|+++|+     .|.|+||++||+||+++||++||+||++|
T Consensus        16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~~   89 (250)
T 3l60_A           16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNSTW   89 (250)
T ss_dssp             CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEEE
T ss_pred             CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEEE
Confidence            44 9999999999999999999999999999999999999999873     47899999999999999999999999999


Q ss_pred             eC----CeEEEcCCccEEEEeecCCceeec
Q 018779          322 DG----DDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       322 d~----~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      ++    ++|++++++||||||+|++||++|
T Consensus        90 ~~~~~~~~i~~~~~vnigvAV~t~~GL~vP  119 (250)
T 3l60_A           90 VDSGEGPQVHVHRGVHLGFGAATERGLLVP  119 (250)
T ss_dssp             ECTTTSCEEEECSSCCEEECEEETTEEECC
T ss_pred             eccCCCCeEEEcCceeEEEEEEcCCCeEEe
Confidence            85    389999999999999999999987

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=99.94  E-value=2.9e-27  Score=218.37  Aligned_cols=104  Identities=23%  Similarity=0.346  Sum_probs=98.2

Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      .++++||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+     .|.|+||++|++||+++||++||+||+
T Consensus         5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~-----~g~kls~~~~~ikA~~~Al~~~P~~N~   79 (224)
T 3rqc_A            5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA-----RNRKVTVTGFLARIVPSILKQYPYLNA   79 (224)
T ss_dssp             -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT-----TTCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred             CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence            457899999999999999999999999999999999999999999984     288999999999999999999999999


Q ss_pred             EEeCC--eEEEcCCccEEEEeecCCceeecC
Q 018779          320 VIDGD--DIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       320 ~~d~~--~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      +|+++  +|++++++||||||+|++||++|.
T Consensus        80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPv  110 (224)
T 3rqc_A           80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFV  110 (224)
T ss_dssp             BCCSSTTCCCEECSCCEEEEEECSSCEEEEE
T ss_pred             EEeCCCCEEEEeCccceEeEEEcCCceEEeE
Confidence            99987  899999999999999999999884

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=99.94  E-value=1.2e-26  Score=216.59  Aligned_cols=106  Identities=32%  Similarity=0.375  Sum_probs=100.0

Q ss_pred             cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779          241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV  320 (350)
Q Consensus       241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~  320 (350)
                      .+++||++|||.||++|++||+++||||++.|+|+|+|+++|+++|+.+. +.|.|+||++|++||+++||++||+||++
T Consensus        15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikA~~~Al~~~P~~Na~   93 (243)
T 1dpb_A           15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPLLLKACAYLLKELPDFNSS   93 (243)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred             ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence            46789999999999999999999999999999999999999999997654 56899999999999999999999999999


Q ss_pred             EeCC--eEEEcCCccEEEEeecCCceeec
Q 018779          321 IDGD--DIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       321 ~d~~--~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      |+++  +|+++++|||||||+|++||++|
T Consensus        94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vP  122 (243)
T 1dpb_A           94 LAPSGQALIRKKYVHIGFAVDTPDGLLVP  122 (243)
T ss_dssp             ECTTSSCEEECSSCCEEECEEETTEEECC
T ss_pred             EecCCCeEEEeCceeEEEEEECCCcEEEE
Confidence            9964  89999999999999999999987

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=99.93  E-value=5.2e-26  Score=214.52  Aligned_cols=106  Identities=28%  Similarity=0.436  Sum_probs=98.7

Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      .++++||++|||+||++|++|+ ++||||++.|||||+|+++|+++|+.. ++.|.|+||++||+||+++||++||+||+
T Consensus        30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na  107 (262)
T 2ii3_A           30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIA-FARGIKLSFMPFFLKAASLGLLQFPILNA  107 (262)
T ss_dssp             CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHCGGGSE
T ss_pred             CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhh-hhccCCccHHHHHHHHHHHHHHhChHhhE
Confidence            4578999999999999999997 599999999999999999999998743 45689999999999999999999999999


Q ss_pred             EEeCC--eEEEcCCccEEEEeecCCceeec
Q 018779          320 VIDGD--DIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       320 ~~d~~--~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +|+++  +|++++++||||||+|++||++|
T Consensus       108 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vP  137 (262)
T 2ii3_A          108 SVDENCQNITYKASHNIGIAMDTEQGLIVP  137 (262)
T ss_dssp             EECTTSCEEEECSSCCEEECEEETTEEECC
T ss_pred             EEeCCCCEEEEecccceEEEEEcCCCEEEE
Confidence            99864  89999999999999999999987

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=99.93  E-value=1e-26  Score=216.58  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=99.8

Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      ..+++||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+..  +.|+||++|++||+++||++||+||+
T Consensus        11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~Na   88 (239)
T 3b8k_A           11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEANS   88 (239)
T ss_dssp             SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred             CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhhE
Confidence            3567899999999999999999999999999999999999999999976432  36999999999999999999999999


Q ss_pred             EEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779          320 VIDGDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       320 ~~d~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      +|++++|+++++|||||||+|++||++|.
T Consensus        89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPv  117 (239)
T 3b8k_A           89 SWMDTVIRQNHVVDVSVAVSTPAGLITPI  117 (239)
T ss_dssp             TSCCCSSSCSCCCCEEECEECSSCEECCE
T ss_pred             EEECCEEEEeCceeEEEEEEcCCcEEEEE
Confidence            99999999999999999999999999973

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.84  E-value=1.8e-20  Score=158.77  Aligned_cols=86  Identities=24%  Similarity=0.456  Sum_probs=80.0

Q ss_pred             CCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEE
Q 018779           85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAV  163 (350)
Q Consensus        85 ~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~  163 (350)
                      ++..+.++|+||+||++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|| .|.+|++|++
T Consensus        22 ~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~  101 (128)
T 1y8o_B           22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI  101 (128)
T ss_dssp             -CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred             ccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence            445677999999999999999999999999999999999999999999999999999999999999998 8999999999


Q ss_pred             EEeCCCc
Q 018779          164 ISKSGEG  170 (350)
Q Consensus       164 i~~~~~~  170 (350)
                      |...++.
T Consensus       102 i~~~~~~  108 (128)
T 1y8o_B          102 IVEKEAD  108 (128)
T ss_dssp             EESSGGG
T ss_pred             EecCccc
Confidence            9875543

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=155.46  Aligned_cols=83  Identities=27%  Similarity=0.435  Sum_probs=78.9

Q ss_pred             CCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEEEE
Q 018779           87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVIS  165 (350)
Q Consensus        87 ~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~i~  165 (350)
                      ..|.++|+||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++|.
T Consensus         4 ~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~   83 (108)
T 2dne_A            4 GSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV   83 (108)
T ss_dssp             CCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred             CccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence            4677899999999999999999999999999999999999999999999999999999999999999 899999999998


Q ss_pred             eCCC
Q 018779          166 KSGE  169 (350)
Q Consensus       166 ~~~~  169 (350)
                      ..++
T Consensus        84 ~~~~   87 (108)
T 2dne_A           84 GKPE   87 (108)
T ss_dssp             SCHH
T ss_pred             cCcc
Confidence            7543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.83  E-value=3.7e-20  Score=146.18  Aligned_cols=82  Identities=23%  Similarity=0.459  Sum_probs=77.7

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEEEEe
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISK  166 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~i~~  166 (350)
                      .+.++|+||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|..
T Consensus         3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~   82 (87)
T 3crk_C            3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (87)
T ss_dssp             CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred             CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence            456899999999999999999999999999999999999999999999999999999999999999 8999999999986


Q ss_pred             CCC
Q 018779          167 SGE  169 (350)
Q Consensus       167 ~~~  169 (350)
                      .++
T Consensus        83 ~~~   85 (87)
T 3crk_C           83 KEA   85 (87)
T ss_dssp             SST
T ss_pred             ccC
Confidence            543

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=151.44  Aligned_cols=83  Identities=24%  Similarity=0.563  Sum_probs=78.8

Q ss_pred             CCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEe-CCCCEEEEEE
Q 018779           87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV-EPGAKIAVIS  165 (350)
Q Consensus        87 ~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v-~vG~~la~i~  165 (350)
                      ..+.++|+||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| .+|++|+.|.
T Consensus         4 ~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~   83 (98)
T 2dnc_A            4 GSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV   83 (98)
T ss_dssp             CCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred             CcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence            457789999999999999999999999999999999999999999999999999999999999999998 9999999998


Q ss_pred             eCCC
Q 018779          166 KSGE  169 (350)
Q Consensus       166 ~~~~  169 (350)
                      ..++
T Consensus        84 ~~~~   87 (98)
T 2dnc_A           84 EEGE   87 (98)
T ss_dssp             CTTS
T ss_pred             cCCC
Confidence            7554

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.82  E-value=7.8e-20  Score=146.42  Aligned_cols=80  Identities=23%  Similarity=0.373  Sum_probs=76.8

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      +.++|+||++|++|++|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.|..++
T Consensus         3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~   82 (93)
T 1k8m_A            3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (93)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999998644

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=99.78  E-value=4.4e-19  Score=163.03  Aligned_cols=77  Identities=12%  Similarity=0.200  Sum_probs=72.1

Q ss_pred             cccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEe-e
Q 018779          261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-G  339 (350)
Q Consensus       261 ~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAV-d  339 (350)
                      ..++||||++.|||||+|+++|++          .++|+++|++||+++||++||+||++|++++|+++++||||||| +
T Consensus        27 ~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~   96 (219)
T 1q23_A           27 SVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFH   96 (219)
T ss_dssp             TTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEecccCeEEEEEe
Confidence            368999999999999999999964          27899999999999999999999999999999999999999999 9


Q ss_pred             cCCceeec
Q 018779          340 TKKVCDNS  347 (350)
Q Consensus       340 T~~GLi~~  347 (350)
                      ||+||++|
T Consensus        97 t~~GL~~p  104 (219)
T 1q23_A           97 EQTETFSS  104 (219)
T ss_dssp             TTTTEEEE
T ss_pred             cCCcEEEE
Confidence            99999955

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.78  E-value=5e-19  Score=136.79  Aligned_cols=76  Identities=41%  Similarity=0.675  Sum_probs=74.0

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      ++|+||++|+++.+|+|.+|++++||.|++||+|+++|++|+.++|.||++|+|.++++++|+.|..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999865

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=99.77  E-value=5.9e-19  Score=161.52  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=71.8

Q ss_pred             ccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEe-ec
Q 018779          262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-GT  340 (350)
Q Consensus       262 ~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAV-dT  340 (350)
                      .++||+|++.|||||+|+++|++          .++|+++|++||+++||++||++|++|++++|+++++||||||| +|
T Consensus        23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t   92 (213)
T 3cla_A           23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ   92 (213)
T ss_dssp             TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred             CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence            47899999999999999999953          27899999999999999999999999999999999999999999 99


Q ss_pred             CCceeec
Q 018779          341 KKVCDNS  347 (350)
Q Consensus       341 ~~GLi~~  347 (350)
                      |+||++|
T Consensus        93 ~~GL~vp   99 (213)
T 3cla_A           93 ETETFSA   99 (213)
T ss_dssp             TTTEEEE
T ss_pred             CCceEEE
Confidence            9999976

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.76  E-value=5.6e-20  Score=142.76  Aligned_cols=77  Identities=36%  Similarity=0.605  Sum_probs=74.1

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      .++|+||++|+++.+|+|.+|++++||.|++||+|++||++|+.++|+||++|+|.++++++|+.+..|++|+.|..
T Consensus         2 ~~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A            2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             CcEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999998864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.75  E-value=2.8e-18  Score=131.86  Aligned_cols=75  Identities=32%  Similarity=0.588  Sum_probs=73.4

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      ++|+||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999986

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.1e-18  Score=158.32  Aligned_cols=76  Identities=14%  Similarity=0.089  Sum_probs=71.3

Q ss_pred             ccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEe-CCeEEEcCCccEEEEe-e
Q 018779          262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID-GDDIIYRDYIDISFAV-G  339 (350)
Q Consensus       262 ~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d-~~~I~~~~~vnIGIAV-d  339 (350)
                      .++||+|++.|||+|+|+++|++          .++|+++|++||+++||++||++|++|+ +++|++++++|||||| +
T Consensus        25 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~   94 (217)
T 2i9d_A           25 FQNPQLSITSEVECGGARQRAKA----------AGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI   94 (217)
T ss_dssp             CSBCEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred             CCCceEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence            57999999999999999999964          2789999999999999999999999999 8899999999999999 9


Q ss_pred             cCCceeec
Q 018779          340 TKKVCDNS  347 (350)
Q Consensus       340 T~~GLi~~  347 (350)
                      ||+||++|
T Consensus        95 t~~GL~~p  102 (217)
T 2i9d_A           95 KENGKFFT  102 (217)
T ss_dssp             STTSCEEE
T ss_pred             cCCceEeE
Confidence            99999954

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.74  E-value=4.3e-18  Score=131.62  Aligned_cols=78  Identities=26%  Similarity=0.520  Sum_probs=74.3

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |.++|+||++|++  +|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus         1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   78 (80)
T 1qjo_A            1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence            4578999999998  99999999999999999999999999999999999999999999999999999999999998643

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.72  E-value=8.4e-18  Score=184.95  Aligned_cols=91  Identities=13%  Similarity=0.101  Sum_probs=74.8

Q ss_pred             HHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCC----eEEEcCC
Q 018779          256 RLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD----DIIYRDY  331 (350)
Q Consensus       256 ~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~----~I~~~~~  331 (350)
                      +|++|+ ++||||++.|||||+|+++|+++|+.+.++.|.|+||++||+||+++||++||.||++|+++    .|+++++
T Consensus         1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~   79 (1113)
T 2xt6_A            1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH   79 (1113)
T ss_dssp             -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred             Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence            689996 79999999999999999999999987766779999999999999999999999999999854    6999999


Q ss_pred             ccEEEEeecC--Cc---eeec
Q 018779          332 IDISFAVGTK--KV---CDNS  347 (350)
Q Consensus       332 vnIGIAVdT~--~G---Li~~  347 (350)
                      |||||||+|+  +|   |++|
T Consensus        80 vnigiAV~t~~~~G~~gL~vP  100 (1113)
T 2xt6_A           80 TNLGLAIDLQGKDGNRSLVVA  100 (1113)
T ss_dssp             CCEEEEC-----------CEE
T ss_pred             ccEEEEEeccCCCCceeEEee
Confidence            9999999998  66   9998

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.70  E-value=6e-17  Score=125.04  Aligned_cols=75  Identities=25%  Similarity=0.492  Sum_probs=71.4

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ++|+||++|++  + +|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~   76 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence            57999999996  7 999999999999999999999999999999999999999999999999999999999998643

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.67  E-value=2.3e-17  Score=127.88  Aligned_cols=77  Identities=30%  Similarity=0.509  Sum_probs=73.3

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .++|+||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|...
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            4689999999 6899999999999999999999999999999999999999999999999999999999999999754

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.58  E-value=1.5e-16  Score=124.80  Aligned_cols=73  Identities=26%  Similarity=0.529  Sum_probs=69.1

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .++|++|.+      |+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus         2 ~~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            2 VKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   74 (85)
T ss_dssp             CSCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred             CcEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            357889988      8999999999999999999999999999999999999999999999999999999999998754

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.47  E-value=1.5e-13  Score=103.46  Aligned_cols=64  Identities=27%  Similarity=0.483  Sum_probs=61.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      .+|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|..
T Consensus         6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A            6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            4799999999999999999999999999999999999999999999999999999999999864

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.45  E-value=7e-14  Score=109.44  Aligned_cols=65  Identities=20%  Similarity=0.408  Sum_probs=62.1

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .+|+|.+|++++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+.|..|++|+.|...+
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~   76 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD   76 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence            5799999999999999999999999999999999999999999999 9999999999999998644

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.43  E-value=3.6e-14  Score=113.49  Aligned_cols=77  Identities=21%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             ceEEEEccCCCCCC----CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779           89 DLVDAVVPFMGESI----TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus        89 ~~~~i~~P~lG~~m----~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      ...+|.+|..++..    ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++.+++|+.|..|++|+.|
T Consensus        14 ~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i   93 (94)
T 2jku_A           14 GTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL   93 (94)
T ss_dssp             ----------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-----------------------------------
T ss_pred             cCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEE
Confidence            34578899988865    58999999999999999999999999999999999999999999999999999999999987


Q ss_pred             E
Q 018779          165 S  165 (350)
Q Consensus       165 ~  165 (350)
                      +
T Consensus        94 e   94 (94)
T 2jku_A           94 E   94 (94)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=4.9e-13  Score=107.90  Aligned_cols=65  Identities=22%  Similarity=0.430  Sum_probs=61.9

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|. +++++|+.|..|++|+.|...+
T Consensus        24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~~   88 (100)
T 2dn8_A           24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELDD   88 (100)
T ss_dssp             SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCSC
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcCC
Confidence            5799999999999999999999999999999999999999999 9999999999999999997543

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.38  E-value=1.6e-12  Score=98.10  Aligned_cols=63  Identities=29%  Similarity=0.577  Sum_probs=60.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      ..|+|.+|++++||.|++||+|++++++|...+|.||.+|+|.++.+++|+.+..|++|+.|+
T Consensus        12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            579999999999999999999999999999999999999999999999999999999999873

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.35  E-value=1.9e-12  Score=98.76  Aligned_cols=63  Identities=25%  Similarity=0.504  Sum_probs=60.8

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .+|+|.+|++++||.|++||+|++++++|+..+|.||++|+|.++.+++|+.+..|++|+.|+
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            579999999999999999999999999999999999999999999999999999999999874

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.34  E-value=2.7e-12  Score=98.86  Aligned_cols=63  Identities=19%  Similarity=0.415  Sum_probs=58.3

Q ss_pred             CeEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      ..|+|.+       |++++||.|++||+|+++|++|+.++|.||++|+|.++++++|+.|..|++|+.|+
T Consensus        11 ~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           11 MVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            3466665       69999999999999999999999999999999999999999999999999999874

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.33  E-value=2.7e-12  Score=103.41  Aligned_cols=67  Identities=18%  Similarity=0.395  Sum_probs=63.5

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      ..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus        21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~   87 (99)
T 2ejm_A           21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES   87 (99)
T ss_dssp             SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence            4699999999999999999999999999999999999999999999999999999999999986543

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.25  E-value=8.5e-12  Score=131.57  Aligned_cols=63  Identities=19%  Similarity=0.282  Sum_probs=60.8

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      -.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus       619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            359999999999999999999999999999999999999999999999999999999999884

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.19  E-value=2.3e-11  Score=135.35  Aligned_cols=61  Identities=31%  Similarity=0.482  Sum_probs=59.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      .|+|.+|+|++||.|++||+|++|||||+.++|+||++|+|.+|++++||.|.+|++|+.|
T Consensus      1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            4999999999999999999999999999999999999999999999999999999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.16  E-value=3.5e-11  Score=133.30  Aligned_cols=64  Identities=23%  Similarity=0.471  Sum_probs=61.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus      1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            5999999999999999999999999999999999999999999999999999999999999754

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.98  E-value=6.4e-10  Score=91.31  Aligned_cols=67  Identities=19%  Similarity=0.406  Sum_probs=61.6

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeec-----------------------------eecCCCCeEEEEEeeCCCC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-----------------------------DVASPQAGVIQNLIAKEGE  153 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-----------------------------ei~ap~~G~l~~i~~~eG~  153 (350)
                      ..|+|.+|++++||.|++||+|+++++.++..                             .|.||++|+|.++.+++|+
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~   87 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD   87 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence            47999999999999999999999999986654                             8999999999999999999


Q ss_pred             EeCCC-CEEEEEEeCCC
Q 018779          154 TVEPG-AKIAVISKSGE  169 (350)
Q Consensus       154 ~v~vG-~~la~i~~~~~  169 (350)
                      .|..| ++|+.|...+.
T Consensus        88 ~v~~g~~~l~~i~~~~~  104 (116)
T 2k32_A           88 YVSASTTELVRVTNLNP  104 (116)
T ss_dssp             EECTTTSCCEEEECSCT
T ss_pred             EEcCCCcEEEEEECCCe
Confidence            99999 99999987554

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.92  E-value=3.2e-10  Score=119.90  Aligned_cols=61  Identities=21%  Similarity=0.331  Sum_probs=59.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      +|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI  717 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence            6999999999999999999999999999999999999999999999999999999999876

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.87  E-value=1.1e-09  Score=121.66  Aligned_cols=62  Identities=19%  Similarity=0.434  Sum_probs=53.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            69999999999999999999999999999999999999999999999999999999999875

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.84  E-value=3.1e-09  Score=90.57  Aligned_cols=71  Identities=24%  Similarity=0.332  Sum_probs=60.5

Q ss_pred             EEEccCCCCCCCeEEEEEEE-cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEE---eeCCCCEeC---CCC-EEEE
Q 018779           92 DAVVPFMGESITDGTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---IAKEGETVE---PGA-KIAV  163 (350)
Q Consensus        92 ~i~~P~lG~~m~eg~I~~w~-v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i---~~~eG~~v~---vG~-~la~  163 (350)
                      .+.+|.+|+      |+.+. +++||.|++||+||+||++|+..+|.||++|+|.++   +++.|+.|.   -|+ .|+.
T Consensus        38 ~~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~  111 (136)
T 1zko_A           38 NHAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK  111 (136)
T ss_dssp             HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred             hhhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence            345677775      33333 499999999999999999999999999999999999   889999998   888 9999


Q ss_pred             EEeCC
Q 018779          164 ISKSG  168 (350)
Q Consensus       164 i~~~~  168 (350)
                      |...+
T Consensus       112 i~~~~  116 (136)
T 1zko_A          112 MEISD  116 (136)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            98654

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.43  E-value=8.9e-08  Score=81.01  Aligned_cols=72  Identities=21%  Similarity=0.233  Sum_probs=56.6

Q ss_pred             EEEEccCCCCCCCeEEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC---Ee---CCCC-EEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TV---EPGA-KIA  162 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~---~v---~vG~-~la  162 (350)
                      +++.+|.+|+      |+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+.++   .|   +-|+ -|+
T Consensus        28 td~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (131)
T 1hpc_A           28 TDHAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI  101 (131)
T ss_dssp             CHHHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             ehhhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence            3445666665      444444 99999999999999999999999999999999999866655   44   3455 788


Q ss_pred             EEEeCC
Q 018779          163 VISKSG  168 (350)
Q Consensus       163 ~i~~~~  168 (350)
                      .|...+
T Consensus       102 ~i~~~~  107 (131)
T 1hpc_A          102 KIKPTS  107 (131)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            888654

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.42  E-value=2.5e-07  Score=77.95  Aligned_cols=73  Identities=26%  Similarity=0.283  Sum_probs=56.9

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC---CCCEe---CCCC-EEEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK---EGETV---EPGA-KIAV  163 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~---eG~~v---~vG~-~la~  163 (350)
                      +++..|.+|+ +...++    +++||.|++||+||+||++|+..+|.||.+|+|.+++..   ..+.+   +-|+ -|+.
T Consensus        28 t~~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~  102 (128)
T 1onl_A           28 TDYAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFR  102 (128)
T ss_dssp             CHHHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEE
T ss_pred             ehHHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEE
Confidence            3445677775 333333    599999999999999999999999999999999999765   44445   5676 8888


Q ss_pred             EEeCC
Q 018779          164 ISKSG  168 (350)
Q Consensus       164 i~~~~  168 (350)
                      |...+
T Consensus       103 i~~~~  107 (128)
T 1onl_A          103 LKPRD  107 (128)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            88654

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.42  E-value=2.1e-07  Score=78.46  Aligned_cols=73  Identities=21%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC---EeC---CCC-EEEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TVE---PGA-KIAV  163 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~---~v~---vG~-~la~  163 (350)
                      +++.+|.+|+ +...++    +++||.|++||+||+||++|+..+|.||.+|+|.+++...++   .+.   -|+ -|+.
T Consensus        29 td~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~  103 (128)
T 3a7l_A           29 TEHAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFK  103 (128)
T ss_dssp             CHHHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred             ehHHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEE
Confidence            3455677775 333333    599999999999999999999999999999999999875554   344   565 7888


Q ss_pred             EEeCC
Q 018779          164 ISKSG  168 (350)
Q Consensus       164 i~~~~  168 (350)
                      |...+
T Consensus       104 i~~~~  108 (128)
T 3a7l_A          104 IKASD  108 (128)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            87644

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.16  E-value=1.1e-06  Score=81.78  Aligned_cols=67  Identities=24%  Similarity=0.331  Sum_probs=58.5

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------------------------------------------  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  131 (350)
                      ..|+|.+|+|++||.|++||+|+++++..                                                   
T Consensus        29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~  108 (277)
T 2f1m_A           29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  108 (277)
T ss_dssp             SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence            46999999999999999999999998741                                                   


Q ss_pred             --------------------eeceecCCCCeEEEEEeeCCCCEeCCC--CEEEEEEeCCC
Q 018779          132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGE  169 (350)
Q Consensus       132 --------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG--~~la~i~~~~~  169 (350)
                                          ....|.||++|+|..+.+.+|+.|..|  ++|+.|...+.
T Consensus       109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~  168 (277)
T 2f1m_A          109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP  168 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCCc
Confidence                                124799999999999999999999999  68999976543

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.10  E-value=4.7e-06  Score=82.55  Aligned_cols=66  Identities=20%  Similarity=0.366  Sum_probs=58.4

Q ss_pred             CeEEEEEEEc-CCCCeecCCCeEEEEEcC------------------------------------------------Cee
Q 018779          103 TDGTLAKFLK-QPGDRVEMDEPIAQIETD------------------------------------------------KVT  133 (350)
Q Consensus       103 ~eg~I~~w~v-~~Gd~V~~gd~l~evetd------------------------------------------------Ka~  133 (350)
                      ..|.|.+++| ++||.|++||+|+++++.                                                ...
T Consensus       128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  207 (413)
T 3ne5_B          128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR  207 (413)
T ss_dssp             SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred             cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence            4699999998 999999999999999952                                                124


Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..|.||++|+|.++.+.+|+.|..|++|+.|...+
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~~  242 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  242 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCCC
Confidence            57999999999999999999999999999997543

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.09  E-value=4.1e-06  Score=80.64  Aligned_cols=67  Identities=22%  Similarity=0.353  Sum_probs=59.3

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--------------------------------------------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------------------------------------------------  132 (350)
                      ..|.|.++++++||.|++||+|+++++...                                                  
T Consensus        64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a  143 (359)
T 3lnn_A           64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS  143 (359)
T ss_dssp             SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999997531                                                  


Q ss_pred             --------------------------eceecCCCCeEEEEEeeCCCCEeCC-CCEEEEEEeCCC
Q 018779          133 --------------------------TIDVASPQAGVIQNLIAKEGETVEP-GAKIAVISKSGE  169 (350)
Q Consensus       133 --------------------------~~ei~ap~~G~l~~i~~~eG~~v~v-G~~la~i~~~~~  169 (350)
                                                ...|.||++|+|..+.+.+|+.|.. |++|+.|...+.
T Consensus       144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~~  207 (359)
T 3lnn_A          144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLSH  207 (359)
T ss_dssp             HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCSE
T ss_pred             HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCCe
Confidence                                      2469999999999999999999999 999999986543

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=98.05  E-value=4.6e-06  Score=79.66  Aligned_cols=66  Identities=21%  Similarity=0.398  Sum_probs=57.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------------------------------------------  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  131 (350)
                      ..|.|.+|++++||.|++||+|+++++.-                                                   
T Consensus        38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  117 (341)
T 3fpp_A           38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD  117 (341)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence            46999999999999999999999999741                                                   


Q ss_pred             ----------------------------------eeceecCCCCeEEEEEeeCCCCEeCCCCE---EEEEEeCC
Q 018779          132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISKSG  168 (350)
Q Consensus       132 ----------------------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG~~---la~i~~~~  168 (350)
                                                        ....|.||++|+|.++.+.+|+.|..|++   |+.|.+.+
T Consensus       118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS  191 (341)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence                                              01459999999999999999999999987   88887544

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.84  E-value=6.9e-06  Score=79.89  Aligned_cols=66  Identities=26%  Similarity=0.360  Sum_probs=57.7

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------------------------------------------  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  131 (350)
                      ..|+|.++++++||.|++||+|++|++..                                                   
T Consensus        50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~  129 (369)
T 1vf7_A           50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  129 (369)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999998642                                                   


Q ss_pred             ------eeceecCCCCeEEEEEeeCCCCEeCCC--CEEEEEEeCC
Q 018779          132 ------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSG  168 (350)
Q Consensus       132 ------a~~ei~ap~~G~l~~i~~~eG~~v~vG--~~la~i~~~~  168 (350)
                            ....|.||++|+|.++.+.+|+.|..|  ++|+.|...+
T Consensus       130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~  174 (369)
T 1vf7_A          130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD  174 (369)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred             HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence                  125799999999999999999999995  8999997544

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.80  E-value=2.3e-05  Score=65.64  Aligned_cols=77  Identities=13%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCE------eCCCC-EE
Q 018779           90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET------VEPGA-KI  161 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~------v~vG~-~l  161 (350)
                      ...|-+-+.... .=|.|+.+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++.-...+.      -+-|+ =|
T Consensus        18 ~~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl   96 (125)
T 3klr_A           18 VGTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWL   96 (125)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCC
T ss_pred             EEEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceE
Confidence            344444443321 1255665544 789999999999999999999999999999999987665543      22343 36


Q ss_pred             EEEEeC
Q 018779          162 AVISKS  167 (350)
Q Consensus       162 a~i~~~  167 (350)
                      +.|...
T Consensus        97 ~ki~~~  102 (125)
T 3klr_A           97 IKMTFS  102 (125)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            666643

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.69  E-value=4.2e-05  Score=65.38  Aligned_cols=49  Identities=27%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779          105 GTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE  153 (350)
Q Consensus       105 g~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~  153 (350)
                      |.|+-+-. ++|+.|++||+++.||+.|+..+|.||.+|+|.++.-...+
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d  103 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE  103 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence            44554433 88999999999999999999999999999999998766554

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.62  E-value=4.6e-05  Score=64.70  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=44.0

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779           90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA  149 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~  149 (350)
                      ...|-+-+.... .=|.|+-+-. ++|++|++||.++.||+.|+..+|.||.+|+|.++.-
T Consensus        35 ~~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~   94 (137)
T 3tzu_A           35 PVRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT   94 (137)
T ss_dssp             CEEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred             EEEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence            444544443321 1244554433 8899999999999999999999999999999999854

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.49  E-value=7.1e-06  Score=79.12  Aligned_cols=64  Identities=22%  Similarity=0.406  Sum_probs=55.1

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------------------------------------------  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  131 (350)
                      ..|.|.++++++||.|++||+|+++++..                                                   
T Consensus        39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  118 (369)
T 4dk0_A           39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN  118 (369)
T ss_dssp             SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred             CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            46999999999999999999999998742                                                   


Q ss_pred             ----------------------------------eeceecCCCCeEEEEEeeCCCCEeCCCCE---EEEEEe
Q 018779          132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISK  166 (350)
Q Consensus       132 ----------------------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG~~---la~i~~  166 (350)
                                                        ....|.||++|+|.++.+.+|+.|..|++   |+.|..
T Consensus       119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~  190 (369)
T 4dk0_A          119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD  190 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence                                              01359999999999999999999999998   666544

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.42  E-value=0.00016  Score=62.44  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779          105 GTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA  149 (350)
Q Consensus       105 g~I~~w~-v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~  149 (350)
                      |.|+-+- .++|+.|++||+++.||+.|+..+|.||.+|.|.++.-
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~  104 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS  104 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            4444332 37899999999999999999999999999999988764

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.86  E-value=0.00068  Score=53.86  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             CCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          121 DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       121 gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      |+.+|.+|..+-...|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~   51 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM   51 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence            45567888888888999999999999999999999999999999854

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=96.79  E-value=0.0039  Score=60.44  Aligned_cols=62  Identities=19%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      .| +.+..++.||.|++||+|++|+.    .+...+|.||.+|+|...  .....|..|+.|+.|....
T Consensus       275 ~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~  340 (354)
T 3cdx_A          275 TG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDY  340 (354)
T ss_dssp             CE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEEC
T ss_pred             CE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeec
Confidence            35 77888999999999999999997    578899999999999754  5788999999999998643

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.78  E-value=0.0032  Score=60.55  Aligned_cols=59  Identities=17%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          107 LAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       107 I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +.+.+++.||.|++||+|++|..    .....+|.||++|+|...  ...-.|..|+.|+.|...
T Consensus       267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV  329 (331)
T ss_dssp             EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred             EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence            67779999999999999999997    356789999999999664  445788899999999754

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=96.58  E-value=0.0053  Score=59.98  Aligned_cols=59  Identities=14%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEc------CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779          106 TLAKFLKQPGDRVEMDEPIAQIET------DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       106 ~I~~w~v~~Gd~V~~gd~l~evet------dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      =|.+.+++.||.|++||+|++|-.      .....+|.||.+|+|.-  ....-.|..|+.|+.|..
T Consensus       299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~--~~~~p~V~~G~~l~~i~~  363 (368)
T 3fmc_A          299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL--HFASASVHQGTELYKVMT  363 (368)
T ss_dssp             EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE--ECSSSEECTTCEEEEEEE
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE--EeCCCccCCCCEEEEEee
Confidence            355689999999999999999997      55778999999999954  555689999999999875

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.45  E-value=0.0039  Score=45.75  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=31.0

Q ss_pred             eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      +|.||.+|+|.++++++||.|..|++|+.|+...
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   34 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMK   34 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECCc
Confidence            4779999999999999999999999999998643

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.35  E-value=0.0044  Score=46.14  Aligned_cols=36  Identities=28%  Similarity=0.582  Sum_probs=32.6

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..+|.||.+|+|.++++++|+.|..|++|+.|+...
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~   43 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccc
Confidence            467899999999999999999999999999998643

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.31  E-value=0.0055  Score=45.02  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..|.||.+|+|.++++++||.|..|++|+.|+...
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   40 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK   40 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence            46889999999999999999999999999998643

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=96.10  E-value=0.0064  Score=49.02  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=32.1

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +.|.|+.+|+|.++++++||.|..|++|+.|+..
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            5789999999999999999999999999999875

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=95.84  E-value=0.0069  Score=46.44  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..+|.||.+|+|.++++++||.|..|++|+.|+...
T Consensus         5 ~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   40 (84)
T 2kcc_A            5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK   40 (84)
T ss_dssp             TTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred             CceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence            357999999999999999999999999999998543

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.69  E-value=0.01  Score=51.55  Aligned_cols=65  Identities=25%  Similarity=0.375  Sum_probs=55.6

Q ss_pred             EEEccCCCCCCCeEEEEEEEcCCCCeecC----CCeEEEEEcCCeeceecCCCCeEEEEE--------------------
Q 018779           92 DAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL--------------------  147 (350)
Q Consensus        92 ~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~i--------------------  147 (350)
                      .+.-|      -+|+|+.+. +..|.+-.    |+-++...+|   ..+.||++|+|..+                    
T Consensus        14 ~i~aP------~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH   83 (161)
T 1f3z_A           14 EIIAP------LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVH   83 (161)
T ss_dssp             EEECS------SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEec------CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEE
Confidence            45666      689999975 78888766    8999988876   57899999999988                    


Q ss_pred             ---------------eeCCCCEeCCCCEEEEEEe
Q 018779          148 ---------------IAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       148 ---------------~~~eG~~v~vG~~la~i~~  166 (350)
                                     ++++||.|..|++|+.++.
T Consensus        84 iGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           84 FGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             CSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             ECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence                           8999999999999999974

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=95.35  E-value=0.012  Score=50.77  Aligned_cols=66  Identities=20%  Similarity=0.351  Sum_probs=55.7

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecC----CCeEEEEEcCCeeceecCCCCeEEEE--------------------
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQN--------------------  146 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~--------------------  146 (350)
                      ..+.-|      -+|+|+.. -++.|.|-.    |+-++...++   ..+.||++|+|..                    
T Consensus         8 ~~i~aP------~~G~vv~l-~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi   77 (154)
T 2gpr_A            8 LKVLAP------CDGTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL   77 (154)
T ss_dssp             EEEECS------SSEEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred             CEEEec------CCeEEEEe-eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence            456666      67999997 488888776    8999988876   5899999999987                    


Q ss_pred             ---------------EeeCCCCEeCCCCEEEEEEe
Q 018779          147 ---------------LIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       147 ---------------i~~~eG~~v~vG~~la~i~~  166 (350)
                                     +++++||.|..|++|+.++.
T Consensus        78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~  112 (154)
T 2gpr_A           78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence                           48999999999999999974

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=95.35  E-value=0.042  Score=52.52  Aligned_cols=61  Identities=11%  Similarity=0.219  Sum_probs=49.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +-+...+++.||.|++||+|+++-.    .....+|.||++|+|.-.  ...-.|..|+.|+.|...
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~~  329 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILARP  329 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEeeE
Confidence            3455678899999999999999964    567788999999998554  466788899999988643

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=95.28  E-value=0.018  Score=45.37  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             eeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       132 a~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      -...|.|+.+|+|.++++++||.|..|++|+.|+...
T Consensus        13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~   49 (99)
T 2ejm_A           13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK   49 (99)
T ss_dssp             CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred             CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence            3467899999999999999999999999999998643

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=95.09  E-value=0.02  Score=52.60  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=40.2

Q ss_pred             CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +.|+.-..=..-+.|+.+ -...|.++.+|+|.++++++||.|..|++|+.|+..
T Consensus         3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   56 (277)
T 2f1m_A            3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   56 (277)
T ss_dssp             -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred             eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence            344444444556677765 467899999999999999999999999999999864

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=95.02  E-value=0.013  Score=45.84  Aligned_cols=35  Identities=31%  Similarity=0.495  Sum_probs=31.8

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ...|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   59 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM   59 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence            46789999999999999999999999999999864

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=94.86  E-value=0.016  Score=50.33  Aligned_cols=60  Identities=28%  Similarity=0.415  Sum_probs=51.7

Q ss_pred             CeEEEEEEEcCCCCeecC----CCeEEEEEcCCeeceecCCCCeEEEEE-------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL-------------------------------  147 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~i-------------------------------  147 (350)
                      -+|+|+.+ .+..|.+-.    |+-++...++   ..+.||++|+|..+                               
T Consensus        19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~   94 (162)
T 1ax3_A           19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE   94 (162)
T ss_dssp             CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred             CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence            57999996 778888766    8889877764   47899999999988                               


Q ss_pred             ----eeCCCCEeCCCCEEEEEEe
Q 018779          148 ----IAKEGETVEPGAKIAVISK  166 (350)
Q Consensus       148 ----~~~eG~~v~vG~~la~i~~  166 (350)
                          ++++||.|..|++|+.++.
T Consensus        95 gF~~~V~~Gd~V~~G~~L~~~d~  117 (162)
T 1ax3_A           95 GFTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             TEEESCCCCSEECSEEEEEEECH
T ss_pred             ccEEEEeCCCEEcCCCEEEEECH
Confidence                8999999999999999974

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=94.82  E-value=0.026  Score=50.26  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=26.7

Q ss_pred             EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEE
Q 018779          109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN  146 (350)
Q Consensus       109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~  146 (350)
                      ..+|++||.|++||.||+-.      .|-+.++|+|.+
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d   53 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   53 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence            56999999999999999865      777778887754

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=94.71  E-value=0.026  Score=42.35  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             ceecCCCCeEEEEE-------eeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNL-------IAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i-------~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..|.||..|+|.++       ++++||.|..|++|+.|+...
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k   46 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK   46 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence            46899999999998       899999999999999998644

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=94.65  E-value=0.025  Score=53.95  Aligned_cols=57  Identities=25%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             cCCCCeecCCCeEEEEEcC-CeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          112 KQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ++.|+.-..-..-..|+.+ .-...|.++.+|+|.++++++||.|..|++|+.|+..+
T Consensus        35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~   92 (359)
T 3lnn_A           35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD   92 (359)
T ss_dssp             CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred             eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence            3344444444566778875 66789999999999999999999999999999999754

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=94.16  E-value=0.048  Score=51.52  Aligned_cols=56  Identities=20%  Similarity=0.344  Sum_probs=42.7

Q ss_pred             EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .++.|+.-..=..-..|+.. -...|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus        10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            34455544444455667765 467899999999999999999999999999999864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=94.10  E-value=0.047  Score=40.57  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      ..|+|.++++++||.|..|++|++|+|
T Consensus        51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (77)
T 2l5t_A           51 VRGKIVKILYREGQVVPVGSTLLQIDT   77 (77)
T ss_dssp             CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred             CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence            589999999999999999999999985

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=93.87  E-value=0.087  Score=39.33  Aligned_cols=35  Identities=23%  Similarity=0.490  Sum_probs=30.1

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ..+|.-|      ..|+|.++++++||.|..|++|++|+.+
T Consensus        44 ~~~i~Ap------~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (79)
T 1ghj_A           44 VMEVLAE------ADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEEECS------SCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             eEEEEcC------CCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence            4566666      6899999999999999999999999753

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=93.85  E-value=0.084  Score=40.37  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=30.5

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCC-eecCCCeEEEEEcCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGD-RVEMDEPIAQIETDK  131 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd-~V~~gd~l~evetdK  131 (350)
                      ..+|.-|      ..|+|.++++++|| .|..|++|++++...
T Consensus        48 ~~~i~Ap------~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~   84 (87)
T 3crk_C           48 TIGFEVQ------EEGYLAKILVPEGTRDVPLGTPLCIIVEKE   84 (87)
T ss_dssp             EEEEECC------SCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred             cceeecC------cCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence            4556655      68999999999999 899999999999653

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=93.55  E-value=0.079  Score=39.55  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ..+|.-|      ..|+|.++++++||.|..|++|++|+..
T Consensus        43 ~~~i~Ap------~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A           43 SMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             CEEEEBS------SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             eEEEeCC------CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            4567777      6899999999999999999999999864

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=93.05  E-value=0.066  Score=40.13  Aligned_cols=33  Identities=9%  Similarity=0.159  Sum_probs=29.2

Q ss_pred             ecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       136 i~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      +-++..|.|.++++++||.|..|++|+.|+...
T Consensus        10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k   42 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence            345789999999999999999999999998643

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=92.99  E-value=0.1  Score=50.65  Aligned_cols=48  Identities=23%  Similarity=0.371  Sum_probs=37.2

Q ss_pred             EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe-----------------------------eCCCCEeCCCC
Q 018779          109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI-----------------------------AKEGETVEPGA  159 (350)
Q Consensus       109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~-----------------------------~~eG~~v~vG~  159 (350)
                      ..+|++||.|++||.||+-.      .|-+.++|+|.+..                             +++|+.|.+|+
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~  135 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL  135 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTC
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCc
Confidence            67999999999999999965      56666666664322                             67788888888


Q ss_pred             EEE
Q 018779          160 KIA  162 (350)
Q Consensus       160 ~la  162 (350)
                      +||
T Consensus       136 vla  138 (352)
T 2xhc_A          136 PLS  138 (352)
T ss_dssp             BSB
T ss_pred             EEe
Confidence            887

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=92.93  E-value=0.1  Score=45.23  Aligned_cols=48  Identities=23%  Similarity=0.208  Sum_probs=41.1

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCeec-eecCCCCeEEEEEeeC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLIAK  150 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-ei~ap~~G~l~~i~~~  150 (350)
                      .||.-+-..+.+||+|.+||.|+-|.|.|-.+ -+.||++|+|.-+.--
T Consensus       107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~  155 (169)
T 3d4r_A          107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI  155 (169)
T ss_dssp             ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred             eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence            46777888999999999999999999999875 4899999998765433

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=92.85  E-value=0.14  Score=38.19  Aligned_cols=35  Identities=17%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ..+|.-|      ..|+|.++++++||.|..|++|++|+.+
T Consensus        41 ~~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           41 SMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             EEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            3566666      5799999999999999999999999853

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=92.79  E-value=0.097  Score=51.38  Aligned_cols=58  Identities=16%  Similarity=0.152  Sum_probs=44.7

Q ss_pred             EcCCCCeecCCCeEEEEEcC-CeeceecCCCCeEEEEEee-CCCCEeCCCCEEEEEEeCC
Q 018779          111 LKQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       111 ~v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~~  168 (350)
                      .++.|+.-..=.....|+.| .-...|.++.+|+|.++++ ++||.|+.|++|+.|+..+
T Consensus        98 ~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~  157 (413)
T 3ne5_B           98 TVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD  157 (413)
T ss_dssp             ECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred             EEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence            34444444444556667653 4568899999999999998 9999999999999999544

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=92.72  E-value=0.098  Score=40.75  Aligned_cols=31  Identities=19%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             CCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          138 SPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       138 ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      +...|+|.++++++||.|..|++|+.|+...
T Consensus        15 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K   45 (93)
T 1k8m_A           15 GIREVTVKEWYVKEGDTVSQFDSICEVQSDK   45 (93)
T ss_dssp             TSCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred             CCCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence            3568999999999999999999999998644

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.39  E-value=0.14  Score=40.35  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCee-cCCCeEEEEEcCCe
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRV-EMDEPIAQIETDKV  132 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V-~~gd~l~evetdKa  132 (350)
                      ..+|.-|      .+|+|.++++++||.| ..|++|++|+.+..
T Consensus        50 ~~~i~Ap------~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~~   87 (98)
T 2dnc_A           50 VVTLDAS------DDGILAKIVVEEGSKNIRLGSLIGLIVEEGE   87 (98)
T ss_dssp             EEEEECS------SCEEEEECSSCTTCCCEESSCEEEEEECTTS
T ss_pred             eeEEeCC------CCEEEEEEEeCCCCEEcCCCCEEEEEecCCC
Confidence            4556655      6899999999999998 99999999997643

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=92.38  E-value=0.082  Score=50.90  Aligned_cols=55  Identities=18%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ++.|+.-..-.....|+.. -...|.++.+|+|.++++++||.|..|++|+.|+..
T Consensus        23 v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~   77 (369)
T 1vf7_A           23 LEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA   77 (369)
T ss_dssp             ------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred             EEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            3344433333445566654 356899999999999999999999999999999853

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=92.19  E-value=0.18  Score=41.95  Aligned_cols=29  Identities=31%  Similarity=0.509  Sum_probs=26.6

Q ss_pred             CeEEEEEEEcCCCC-eecCCCeEEEEEcCC
Q 018779          103 TDGTLAKFLKQPGD-RVEMDEPIAQIETDK  131 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd-~V~~gd~l~evetdK  131 (350)
                      .+|+|.++++++|| .|..||+|++|+...
T Consensus        77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~  106 (128)
T 1y8o_B           77 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE  106 (128)
T ss_dssp             SCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred             CCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence            58999999999998 899999999999754

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=92.11  E-value=0.1  Score=46.40  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=37.5

Q ss_pred             cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEE--------------------------EE--eeCCCCEeCCCCEEEE
Q 018779          112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ--------------------------NL--IAKEGETVEPGAKIAV  163 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~--------------------------~i--~~~eG~~v~vG~~la~  163 (350)
                      +++|+.|+.||+|+   -   ...|-|..+|+|.                          .+  ++++||.|..|++|+.
T Consensus        85 V~dG~~V~~GdvLA---K---d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D  158 (193)
T 2xha_A           85 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE  158 (193)
T ss_dssp             CCTTCEECTTSBSS---T---TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred             cCCCCEEcCCCEEe---c---CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence            89999999999999   3   3456788888874                          13  8899999999998875

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=92.07  E-value=0.12  Score=41.45  Aligned_cols=30  Identities=33%  Similarity=0.454  Sum_probs=27.2

Q ss_pred             CCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       139 p~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ...|+|.++++++||.|..|++|+.|+...
T Consensus        19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K   48 (108)
T 2dne_A           19 MQAGTIARWEKKEGDKINEGDLIAEVETDK   48 (108)
T ss_dssp             CCEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred             cccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence            468999999999999999999999998643

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=91.42  E-value=0.12  Score=39.20  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      +..+|.-|      ..|+|.++++++||.|..|++|++|+.+
T Consensus        38 ~~~~i~Ap------~~G~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A           38 ASMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             SEEEEECS------SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             cEEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            45677777      6799999999999999999999999965

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=90.49  E-value=0.074  Score=50.71  Aligned_cols=55  Identities=27%  Similarity=0.336  Sum_probs=43.8

Q ss_pred             cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      ++.|+.-..-..-..|+.. -.+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus        12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST   66 (369)
T ss_dssp             CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred             EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence            4444444455556677754 467899999999999999999999999999999864

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=90.27  E-value=0.26  Score=43.65  Aligned_cols=45  Identities=24%  Similarity=0.342  Sum_probs=37.8

Q ss_pred             EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEe
Q 018779          109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV  155 (350)
Q Consensus       109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v  155 (350)
                      ..+|++||.|++||.|||.  |..+..|-+.++|+|.=--+-+|.++
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~  107 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI  107 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence            5699999999999999977  79999999999999866555555443

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=88.60  E-value=0.38  Score=50.49  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ...|.||..|+|.++++++||.|..|++|++|+...
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK  647 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK  647 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence            456999999999999999999999999999998643

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=88.53  E-value=0.069  Score=40.09  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=27.0

Q ss_pred             CCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          138 SPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       138 ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +..+|+|.++++++||.|..|++|+.|+..
T Consensus        13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   42 (80)
T 1pmr_A           13 SVADATVATWHKKPGDAVVRDEVLVEIETD   42 (80)
T ss_dssp             CCSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred             CCccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence            357999999999999999999999999754

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=85.27  E-value=0.37  Score=46.69  Aligned_cols=46  Identities=22%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEE----------------------------EEeeCCCCEeCCCCEEEE
Q 018779          112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ----------------------------NLIAKEGETVEPGAKIAV  163 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~----------------------------~i~~~eG~~v~vG~~la~  163 (350)
                      +++||.|+.||+|+   -   ...|-|..||+|.                            .+++++||.|..|++|+.
T Consensus       125 v~~g~~v~~G~vla---k---~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~~G~~l~d  198 (352)
T 2xhc_A          125 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE  198 (352)
T ss_dssp             CCTTCEECTTCBSB---S---SSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred             cCCCCEEccCcEEe---c---CceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEeCCCCccc
Confidence            89999999999988   2   2334455555543                            223667777777777764

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=85.10  E-value=0.69  Score=51.42  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..|.||..|+|.++++++||.|..|++|+.|+...
T Consensus      1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp             SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred             ceeecCceEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            57999999999999999999999999999998643

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=84.96  E-value=0.73  Score=51.60  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=32.8

Q ss_pred             eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ...|.||..|+|.++++++||.|..|++|++|+...
T Consensus      1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A         1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp             CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred             CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence            456999999999999999999999999999998644

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=84.44  E-value=0.92  Score=50.79  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=28.0

Q ss_pred             EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEE
Q 018779          109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ  145 (350)
Q Consensus       109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~  145 (350)
                      ..+|++||.|++||.||+.  |--+..|-+.++|+|.
T Consensus      1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D         1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp             EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred             EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence            5789999999999999987  5566777777777653

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=83.90  E-value=0.55  Score=49.61  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..|.||..|+|.++.+++||.|..|++|+.|+...
T Consensus       650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamK  684 (718)
T 3bg3_A          650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMK  684 (718)
T ss_dssp             SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSS
T ss_pred             ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEeccc
Confidence            57999999999999999999999999999998643

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=82.06  E-value=1.2  Score=38.19  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCee---------ceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVT---------IDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~---------~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      +|+=-+.+|++||+|++||+|+++.-++..         +-+.-  +. ...+....+..+..|+.|..+
T Consensus        87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn--~~-~~~~~~~~~~~v~~g~~~~~~  153 (154)
T 2gpr_A           87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN--NG-GKTLEIVKMGEVKQGDVVAIL  153 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE--CS-SCCCSCBCCEEECTTCEEEEE
T ss_pred             CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC--CC-cceEEEccCceEcCCCEEEEe
Confidence            466677899999999999999999865331         11111  11 112333446677888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	2e-30
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	1e-21
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	7e-21
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-20
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	1e-19
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-19
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	5e-17
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-15
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-14
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	5e-14
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-13
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-12
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	1e-11
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	2e-11
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	1e-06

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (285), Expect = 2e-30
 Identities = 59/102 (57%), Positives = 79/102 (77%)

Query: 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 300
           E+RVPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG M
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63

Query: 301 SGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           S +VKA V AL+  P VNA IDGDD++Y +Y D+S AV T +
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPR 105

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.1 bits (213), Expect = 1e-21
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           +  ++P +  ++T GT+ ++ K+ G+++   + +A+IETDK TI     + G +  ++  
Sbjct: 6   MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVP 65

Query: 151 EG-ETVEPGAKIAVISKSGEGVAQAASAEKAAAQPP 185
           EG   V  G  + +I +    ++  A          
Sbjct: 66  EGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDL 101

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (207), Expect = 7e-21
 Identities = 19/82 (23%), Positives = 38/82 (46%)

Query: 88  GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL 147
           G +V   +  +GE I + T+ ++  + GD V   + I ++++DK ++ + S   GVI+ L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 148 IAKEGETVEPGAKIAVISKSGE 169
                +    G  +  I     
Sbjct: 62  YYNLDDIAYVGKPLVDIETEAL 83

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           VD +VP + ES+ D T+A + K+PGD V  DE + +IETDKV ++V +   G++  ++  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62

Query: 151 EGETVEPGAKIAVIS 165
           EG TV     +  + 
Sbjct: 63  EGTTVTSRQILGRLR 77

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 79.9 bits (197), Expect = 1e-19
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 91  VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150
           +D   P   ESI DGT+A + K+PG+ V+ DE I  IETDKV ++V +   GVI  ++  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 151 EGETVEPGAKIAVISKSG 168
           EG+TV  G  +  +++ G
Sbjct: 62  EGDTVLSGELLGKLTEGG 79

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 79.0 bits (195), Expect = 2e-19
 Identities = 20/74 (27%), Positives = 39/74 (52%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           +P +GE I +G + K+  +PGD V  D+ + +++ DK  +++ SP  G +  ++  EG  
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

Query: 155 VEPGAKIAVISKSG 168
              G  +  +   G
Sbjct: 66  ATVGQTLITLDAPG 79

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.2 bits (189), Expect = 5e-17
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 225 PSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSD 284
            +KP  +E + P    E R  M+ +R+ +A  +  S++T   +T  +E D+T L+  R  
Sbjct: 2   AAKPATTEGEFP----ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKK 57

Query: 285 YKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKK 342
           +K     + G+KL  +   VKA VSAL+  PV+N  ID +  +II + Y +I  A  T +
Sbjct: 58  FKA-IAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDR 116

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 69.0 bits (169), Expect = 1e-15
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 90  LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149
           LV+  VP +G    +  +       GD + +D+ +  +ETDK T+DV +  AGV++ +  
Sbjct: 2   LVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKV 60

Query: 150 KEGETVEPGAKIAVISKSGE 169
           K G+ +  G  I V+   G 
Sbjct: 61  KVGDKISEGGLIVVVEAEGT 80

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 90  LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149
           + +  VP +G    +  + + + + GD+V  ++ +  +E DK +++V +P AGV++ L  
Sbjct: 2   VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59

Query: 150 KEGETVEPGAKIAVISKSGE 169
             G+ V+ G+ I +    G 
Sbjct: 60  NVGDKVKTGSLIMIFEVEGA 79

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 68.7 bits (167), Expect = 5e-14
 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 233 PQLPPKD-----RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKD 287
           P +PP D         VPMTRL +  AT L  S      +T F   D+T L   R   K 
Sbjct: 2   PPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKA 61

Query: 288 AFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK 341
              EK GVKL ++   +KA    L+  P  N+ +            +       
Sbjct: 62  VA-EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVD 114

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 62.2 bits (151), Expect = 3e-13
 Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 95  VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154
           VP +G    DG + + L + GD +E+++ +  +E+ K +++V SP+AGV++++  K G+ 
Sbjct: 6   VPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK 62

Query: 155 VEPGAKIAVISKSG 168
           ++ G  I  +  + 
Sbjct: 63  LKEGDAIIELEPAA 76

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           GT++K L + GD V+  + +  +E  K+  ++ +P  G ++ ++ KE + V+ G  +  I
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 268 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDII 327
               ++D+T  +K          +K+  K      F+      +   P     +   +++
Sbjct: 30  NQTVQLDITAFLKTV--------KKNKHKF--YPAFIHILARLMNAHPEFRMAMKDGELV 79

Query: 328 YRDYIDISFAVGTKK 342
             D +   + V  ++
Sbjct: 80  IWDSVHPCYTVFHEQ 94

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 250 RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVS 309
           R+      +        LT+  ++D+T L K          +    K   +   +     
Sbjct: 13  RREHFEFYRHRLPCGFSLTS--KIDITTLKKSL--------DDSAYKFYPV--MIYLIAQ 60

Query: 310 ALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342
           A+     +   I  D++I  D +D  F V  ++
Sbjct: 61  AVNQFDELRMAIKDDELIVWDSVDPQFTVFHQE 93

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 12/57 (21%), Positives = 30/57 (52%)

Query: 108 AKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164
           AK   + G +V + + +  +E  K+   + + ++G ++ ++ + G+ VE    + VI
Sbjct: 23  AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	99.96
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	99.94
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	99.94
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.93
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.91
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.91
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.9
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.89
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.87
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.86
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.83
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.66
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	99.61
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	99.61
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.48
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.27
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.19
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	97.16
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.67
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	96.53
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	96.45
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.11
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	95.88
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.37
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	95.23
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	95.13
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	94.56
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	92.9
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	91.4
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	90.73
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	89.12
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	87.91
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	87.04
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	86.95
d1qapa2	122	Quinolinic acid phosphoribosyltransferase (Nicotin	86.37
d1o4ua2	103	Quinolinic acid phosphoribosyltransferase (Nicotin	85.94
d2tpta3	105	Thymidine phosphorylase {Escherichia coli [TaxId:	85.33
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	84.72

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.4e-30  Score=235.60  Aligned_cols=108  Identities=55%  Similarity=0.872  Sum_probs=104.5

Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      .++++||++|||+||++|++||+++||||++.|||+|+|+++|+++++.+.++.|.|+||++||+||++.||++||.+|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            45789999999999999999999999999999999999999999999888778899999999999999999999999999


Q ss_pred             EEeCCeEEEcCCccEEEEeecCCceeec
Q 018779          320 VIDGDDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       320 ~~d~~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +|++++|++++++||||||++++||++|
T Consensus        83 ~~~~~~i~~~~~vnIgiAv~~~~GL~vP  110 (233)
T d1scza_          83 SIDGDDVVYHNYFDVSMAVSTPRGLVTP  110 (233)
T ss_dssp             EEETTEEECCSSCCEEECEEETTEEECC
T ss_pred             EEcCCeEEEeccceEEEEEEcCCCeEEe
Confidence            9999999999999999999999999998

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=5.1e-28  Score=223.58  Aligned_cols=107  Identities=33%  Similarity=0.480  Sum_probs=100.2

Q ss_pred             CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      .++++||++|||+||++|++||+++||||++.|||+|+|+++|+++|+.. ++.|+|+|+++||+||+++||++||.+|+
T Consensus        13 ~~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~-~~~g~klT~~~~likA~a~AL~~~P~~Na   91 (242)
T d1b5sa_          13 PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNT   91 (242)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHH-HHTTCCCCSHHHHHHHHHHHHHHCGGGSC
T ss_pred             CceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHhhhhhe
Confidence            45678999999999999999999999999999999999999999998754 45799999999999999999999999999


Q ss_pred             EEeC--CeEEEcCCccEEEEeecCCceeec
Q 018779          320 VIDG--DDIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       320 ~~d~--~~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      +|++  +.+.++.+|||||||++++||++|
T Consensus        92 ~~~~~~~~i~~~~~v~igiAv~~~~gL~vP  121 (242)
T d1b5sa_          92 SIDDETEEIIQKHYYNIGIAADTDRGLLVP  121 (242)
T ss_dssp             CBCTTSSCBCCCSSCCEEECEECSSCEECC
T ss_pred             EEcCCCCEEEEeeeeEEEEEecCCCceEee
Confidence            9987  468899999999999999999998

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.94  E-value=8.8e-28  Score=222.09  Aligned_cols=108  Identities=32%  Similarity=0.389  Sum_probs=100.6

Q ss_pred             CCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcce
Q 018779          239 DRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN  318 (350)
Q Consensus       239 ~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lN  318 (350)
                      +..+++||++|||+||++|++||+++||||++.|+|+|+|+++|+.++... ++.|+|+||++||+||++.||++||.+|
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~-~~~~~k~t~~~~iikA~a~Al~~~P~~N   91 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVA-EKAGVKLTVLPLLLKACAYLLKELPDFN   91 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHH-HHTTCCCCSHHHHHHHHHHHHHHSGGGG
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhh-hhcCccccHHHHHHHHHHHHHHHhhhhh
Confidence            345679999999999999999999999999999999999999999988654 4679999999999999999999999999


Q ss_pred             eEEeCC--eEEEcCCccEEEEeecCCceeec
Q 018779          319 AVIDGD--DIIYRDYIDISFAVGTKKVCDNS  347 (350)
Q Consensus       319 a~~d~~--~I~~~~~vnIGIAVdT~~GLi~~  347 (350)
                      ++|+++  .+.+++++||||||++++||++|
T Consensus        92 s~~~~~~~~~~~~~~inigiAv~~~~GL~vP  122 (243)
T d1dpba_          92 SSLAPSGQALIRKKYVHIGFAVDTPDGLLVP  122 (243)
T ss_dssp             EEECTTSSCEEECSSCCEEECEEETTEEECC
T ss_pred             hccccccccceeecccceeeeeccCcceeee
Confidence            999865  78899999999999999999998

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.6e-26  Score=182.65  Aligned_cols=83  Identities=24%  Similarity=0.469  Sum_probs=78.4

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEEEEe
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISK  166 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~i~~  166 (350)
                      .++++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.++++++|| .|++|++||+|..
T Consensus         3 p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~   82 (102)
T d1y8ob1           3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (102)
T ss_dssp             CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred             CCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEec
Confidence            567999999999999999999999999999999999999999999999999999999999999997 6999999999976


Q ss_pred             CCCc
Q 018779          167 SGEG  170 (350)
Q Consensus       167 ~~~~  170 (350)
                      .++.
T Consensus        83 ~~~~   86 (102)
T d1y8ob1          83 KEAD   86 (102)
T ss_dssp             SGGG
T ss_pred             CCcc
Confidence            5543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.91  E-value=2.6e-25  Score=171.61  Aligned_cols=78  Identities=41%  Similarity=0.687  Sum_probs=75.7

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ++|+||+||++|++|+|.+|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|++++
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~G   79 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG   79 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCCC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999998653

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.7e-25  Score=171.86  Aligned_cols=82  Identities=23%  Similarity=0.379  Sum_probs=78.4

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      +..++|+||+||++|++|+|++|++++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|++|++|+.|+.+
T Consensus         2 ~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~   81 (87)
T d1k8ma_           2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (87)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             CccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q 018779          168 GE  169 (350)
Q Consensus       168 ~~  169 (350)
                      +.
T Consensus        82 ~~   83 (87)
T d1k8ma_          82 AL   83 (87)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=2.2e-25  Score=172.33  Aligned_cols=78  Identities=26%  Similarity=0.611  Sum_probs=75.3

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|+.++
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~G   79 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   79 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCSC
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999997654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.2e-25  Score=172.31  Aligned_cols=76  Identities=37%  Similarity=0.622  Sum_probs=74.4

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK  166 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~  166 (350)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|++
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999974

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.6e-22  Score=156.14  Aligned_cols=79  Identities=25%  Similarity=0.512  Sum_probs=75.1

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      |.++|+||+||+  ++++|++|++++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|+.++
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            678999999997  589999999999999999999999999999999999999999999999999999999999998655


Q ss_pred             C
Q 018779          169 E  169 (350)
Q Consensus       169 ~  169 (350)
                      +
T Consensus        79 ~   79 (80)
T d1qjoa_          79 A   79 (80)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.86  E-value=3.5e-23  Score=160.31  Aligned_cols=79  Identities=30%  Similarity=0.524  Sum_probs=75.2

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      +++|+||+|| ++++++|++|++++||.|++||+||+|||||++++++||.+|+|.++++++|+.|++|++|+.|+.+++
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g~   80 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGT   80 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSCC
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEecccC
Confidence            5789999999 489999999999999999999999999999999999999999999999999999999999999986553

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=6.5e-21  Score=146.70  Aligned_cols=75  Identities=28%  Similarity=0.540  Sum_probs=71.5

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      ..|+||+||+   +|+|++|++++||.|++||+||+|||||+.++|+||.+|+|.++++++||.|++|++|+.|+..+
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            4689999994   89999999999999999999999999999999999999999999999999999999999998654

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.66  E-value=1.5e-16  Score=121.30  Aligned_cols=68  Identities=25%  Similarity=0.487  Sum_probs=63.5

Q ss_pred             EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779           91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus        91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      ..|.-|      -.|+|.+|++++||+|++||+||.+|+||+.++|+||++|+|.++++++||.|..|++|+.|
T Consensus         9 ~~v~ap------~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_           9 GEIPAP------LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             SEEEBS------SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             CEEECC------CCcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            356666      34899999999999999999999999999999999999999999999999999999999987

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=4e-16  Score=140.30  Aligned_cols=87  Identities=17%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEc
Q 018779          250 RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYR  329 (350)
Q Consensus       250 Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~  329 (350)
                      ||...+..  ++.+.|||+++.|+|+|+|+++|++          -++|++++++||+++||++||+||++|++++|+++
T Consensus        13 Rk~~f~~f--~~~~~P~~~~t~~vDvT~l~~~~K~----------~~~sf~~~~~~a~~~Al~~~P~~n~~~~~~~i~~~   80 (213)
T d3claa_          13 RREHFEFY--RHRLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVW   80 (213)
T ss_dssp             THHHHHHH--HHTSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEE
T ss_pred             cHHHHHHH--hCCCCCEEEEEEEEeHHHHHHHHHH----------cCCCeeHHHHHHHHHHHHhChHhhhEeccCeEEEe
Confidence            56666664  3467899999999999999988753          26799999999999999999999999999999999


Q ss_pred             CCccEEEEeecCCceeecC
Q 018779          330 DYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       330 ~~vnIGIAVdT~~GLi~~~  348 (350)
                      +++|+|+||++++||++|+
T Consensus        81 ~~i~~~~aV~~~~gl~vp~   99 (213)
T d3claa_          81 DSVDPQFTVFHQETETFSA   99 (213)
T ss_dssp             SCCEEEEEEEETTTTEEEE
T ss_pred             cccceEEEEEcCCCeEEee
Confidence            9999999999999999874

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=6.7e-16  Score=139.06  Aligned_cols=96  Identities=13%  Similarity=0.178  Sum_probs=81.6

Q ss_pred             cceeeCchH-HHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779          241 ERRVPMTRL-RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  319 (350)
Q Consensus       241 ~~~vpls~~-Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa  319 (350)
                      .+.+.++.. ||..-+..  ++...|||+++.++|+|+|+++|++.          ++|++++++||+++||++||+||+
T Consensus         4 ~k~ID~~~W~R~~~f~~f--~~~~~P~f~it~~vDvT~l~~~~K~~----------~~sf~~~~~~av~~Al~~~P~~n~   71 (214)
T d1q23a_           4 YTTVDISQWHRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRM   71 (214)
T ss_dssp             EEECCGGGCTTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSE
T ss_pred             ceEeccccCcCHHHHHHH--hCCCCCeEEEEEEEcHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHhChHhhe
Confidence            345566665 55555443  34568999999999999999988642          579999999999999999999999


Q ss_pred             EEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779          320 VIDGDDIIYRDYIDISFAVGTKKVCDNSF  348 (350)
Q Consensus       320 ~~d~~~I~~~~~vnIGIAVdT~~GLi~~~  348 (350)
                      +|++++|++++++|||+||++++||++|+
T Consensus        72 ~~~~~~i~~~~~i~i~iav~~~~gl~v~~  100 (214)
T d1q23a_          72 AMKDGELVIWDSVHPCYTVFHEQTETFSS  100 (214)
T ss_dssp             EEETTEEEEESCCEEEEEEEETTTTEEEE
T ss_pred             EEcCCceeEcCccCeEEEEEcCCCeEEeE
Confidence            99999999999999999999999999874

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.3e-14  Score=109.84  Aligned_cols=58  Identities=21%  Similarity=0.437  Sum_probs=56.0

Q ss_pred             EEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779          108 AKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS  165 (350)
Q Consensus       108 ~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~  165 (350)
                      .+++|++||.|++||+||.||+||+.++|.||.+|+|.++++++||.|..|++|+.|+
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            4789999999999999999999999999999999999999999999999999999984

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.00015  Score=58.66  Aligned_cols=46  Identities=28%  Similarity=0.356  Sum_probs=38.5

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC
Q 018779          105 GTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK  150 (350)
Q Consensus       105 g~I~~w~-v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~  150 (350)
                      |.|+..- .++|+.|++||.++.||+.|+..+|.||.+|+|.++.-.
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~   81 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA   81 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhh
Confidence            3444433 488999999999999999999999999999999887643

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.19  E-value=0.00019  Score=58.45  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC
Q 018779          112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK  150 (350)
Q Consensus       112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~  150 (350)
                      .++|+.|++||.++.||+.|+..+|.||.+|.|.++.-.
T Consensus        44 p~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~   82 (131)
T d1hpca_          44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTG   82 (131)
T ss_dssp             CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTH
T ss_pred             CCCCccccCCCceEEEEeecccccccCCcchhheeehhh
Confidence            478999999999999999999999999999999887543

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.16  E-value=5.2e-05  Score=65.80  Aligned_cols=62  Identities=27%  Similarity=0.349  Sum_probs=53.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--------------------------------------------------  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------------------------------------------------  132 (350)
                      ..|.|.+|+|++||.|++||+|++++++..                                                  
T Consensus        22 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~  101 (237)
T d1vf7a_          22 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  101 (237)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHH
Confidence            459999999999999999999999987411                                                  


Q ss_pred             -------eceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          133 -------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       133 -------~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                             ...+.||++|+|.+..+.+|+.+..|.....+
T Consensus       102 ~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~~~  140 (237)
T d1vf7a_         102 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMA  140 (237)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSE
T ss_pred             HHhhhhcccccccchhceeeeEEeccCcEEcCCcceeeE
Confidence                   45699999999999999999999998765443

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.67  E-value=0.0009  Score=49.23  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=32.4

Q ss_pred             ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779          134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG  168 (350)
Q Consensus       134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~  168 (350)
                      -.|.||..|+|.++++++||.|..|++|+.++...
T Consensus         9 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K   43 (77)
T d1dcza_           9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred             CEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccC
Confidence            47999999999999999999999999999998754

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0014  Score=48.68  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=30.2

Q ss_pred             CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779           88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIE  128 (350)
Q Consensus        88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~eve  128 (350)
                      .+.++|+-|      .+|+|.+|++++||.|+.||+|++||
T Consensus        46 Km~~~i~a~------~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          46 KMMNQIEAD------KSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             TEEEEEECS------SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             cccEEEEcC------CCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            345566666      78999999999999999999999987

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.45  E-value=0.0019  Score=47.62  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      +.++|.-|      ..|+|.+|++++||.|+.||+|++||...
T Consensus        40 ~~~~i~a~------~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          40 ASMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             CEEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cEEEEEec------cccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            44566665      67999999999999999999999999764

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0026  Score=46.96  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779           90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus        90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      ..++.-|      .+|+|.++++++||.|+.||+|+.+|++-
T Consensus        43 ~~~v~a~------~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_          43 SMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEEBS------SCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             cceEeCC------eeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            3455555      68999999999999999999999999863

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0041  Score=46.67  Aligned_cols=30  Identities=27%  Similarity=0.463  Sum_probs=28.2

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV  132 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa  132 (350)
                      .+|+|.++++++||.|+.|++|+.|+++..
T Consensus        54 ~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~   83 (87)
T d1k8ma_          54 YDGVIKKLYYNLDDIAYVGKPLVDIETEAL   83 (87)
T ss_dssp             SCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence            689999999999999999999999999864

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.37  E-value=0.01  Score=43.49  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=29.8

Q ss_pred             ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus        89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      +.++|.-|      .+|+|.++++++||.|..|++|+.|+.
T Consensus        43 ~~~ei~a~------~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          43 VVMEVLAE------ADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             CEEEEECS------SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eEEEEEec------eeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            34555555      789999999999999999999999985

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.23  E-value=0.0059  Score=52.13  Aligned_cols=42  Identities=21%  Similarity=0.361  Sum_probs=35.7

Q ss_pred             EEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779          125 AQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS  167 (350)
Q Consensus       125 ~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~  167 (350)
                      .+|+..+ .++|.|+.+|+|.++++++|+.|+.|++|+.|+..
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   49 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA   49 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEehH
Confidence            3455543 46799999999999999999999999999999753

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.13  E-value=0.002  Score=47.76  Aligned_cols=28  Identities=11%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      .+|+|.++++++||.|+.||+|+.||++
T Consensus        51 ~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_          51 VKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             SCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            7899999999999999999999999875

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.56  E-value=0.0034  Score=46.38  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ..|+|.+|++++||.|+.||+|+++|++
T Consensus        51 ~~G~i~~i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_          51 VAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             eeEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            6799999999999999999999999975

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.053  Score=41.50  Aligned_cols=30  Identities=27%  Similarity=0.363  Sum_probs=27.3

Q ss_pred             CCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779          140 QAGVIQNLIAKEGETVEPGAKIAVISKSGE  169 (350)
Q Consensus       140 ~~G~l~~i~~~eG~~v~vG~~la~i~~~~~  169 (350)
                      ..|+|.++++++||.|..|++|+.|+.+..
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~   47 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIETDKA   47 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSSC
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEEcCcE
Confidence            579999999999999999999999997543

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=91.40  E-value=0.013  Score=43.08  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=25.3

Q ss_pred             CeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779          103 TDGTLAKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus       103 ~eg~I~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      .+|+|.++++++||.|+.||+|+.||.
T Consensus        52 ~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          52 ADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            689999999999999999999999873

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=90.73  E-value=0.099  Score=42.88  Aligned_cols=58  Identities=16%  Similarity=0.221  Sum_probs=38.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCe---------eceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV---------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVI  164 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa---------~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i  164 (350)
                      +|+--+++|++||+|++||+|+++.-++.         .+-+.-....   .+.......|..|++|+.+
T Consensus        87 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~Gd~i~~i  153 (154)
T d2gpra_          87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQGDVVAIL  153 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECTTCEEEEE
T ss_pred             CCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcCCCEEEEe
Confidence            57778999999999999999999975432         1112211111   2223334468899999876

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.12  E-value=0.14  Score=39.73  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEc
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      +.-+.|++++||.|++||.|++|+-
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~G   94 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLEA   94 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEec
Confidence            4557899999999999999999984

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=87.91  E-value=0.093  Score=43.24  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=24.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      +|+--+++|++||+|++||+|+++.-+
T Consensus        89 ~G~gF~~~v~~Gd~Vk~G~~L~~~D~~  115 (158)
T d1gpra_          89 KGEGFTSFVSEGDRVEPGQKLLEVDLD  115 (158)
T ss_dssp             TTTTEEECCCTTCEECTTCEEEEECHH
T ss_pred             CCcceEEEEcCCCEEcCCCEEEEeCHH
Confidence            566689999999999999999999864

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.04  E-value=0.21  Score=37.94  Aligned_cols=31  Identities=29%  Similarity=0.372  Sum_probs=24.5

Q ss_pred             CCCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779          101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDK  131 (350)
Q Consensus       101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK  131 (350)
                      .++-+.=..|+++.||.|++||+|++|=+++
T Consensus        41 ~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          41 VIDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             CCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             ccCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            3444444688999999999999999998765

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.95  E-value=0.19  Score=38.47  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             CCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          101 SITDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      .++-+.=..++++.||.|++||+||+|=++
T Consensus        39 ~ID~~vGi~l~~k~Gd~V~~G~~l~~ih~~   68 (105)
T d1uoua3          39 PLRLGVGAELLVDVGQRLRRGTPWLRVHRD   68 (105)
T ss_dssp             -CCSSCEEEECSCTTCEECTTCEEEEEEES
T ss_pred             ccCccccEEEeecCCCEEcCCCeEEEEECC
Confidence            344444468899999999999999999664

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.37  E-value=0.21  Score=39.00  Aligned_cols=25  Identities=8%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEc
Q 018779          105 GTLAKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus       105 g~I~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      +.-.+|++++||.|++|+.|++|+-
T Consensus        77 ~i~~~~~~~DG~~v~~G~~i~~i~G  101 (122)
T d1qapa2          77 DVRLTWHVDDGDAIHANQTVFELQG  101 (122)
T ss_dssp             SSEEEESCCTTCEECTTCEEEEEEE
T ss_pred             ceEEEecccCccEEecCceEEEEEE
Confidence            3446899999999999999999984

>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.94  E-value=0.2  Score=37.83  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=20.5

Q ss_pred             EEEEcCCCCeecCCCeEEEEEc
Q 018779          108 AKFLKQPGDRVEMDEPIAQIET  129 (350)
Q Consensus       108 ~~w~v~~Gd~V~~gd~l~evet  129 (350)
                      +.|++++||.|++||.|++++-
T Consensus        61 v~~~~~dG~~v~~g~~I~~i~G   82 (103)
T d1o4ua2          61 SKFNVEDGEYLEGTGVIGEIEG   82 (103)
T ss_dssp             EEESCCTTCEEESCEEEEEEEE
T ss_pred             eeeecCCCCEEEcCceEEEEec
Confidence            6899999999999999999974

>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=85.33  E-value=0.13  Score=39.28  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             CCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779          102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD  130 (350)
Q Consensus       102 m~eg~I~~w~v~~Gd~V~~gd~l~evetd  130 (350)
                      ++-+.=..++++.||.|++||+|++|=++
T Consensus        42 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~   70 (105)
T d2tpta3          42 IDYSVGFTDMARLGDQVDGQRPLAVIHAK   70 (105)
T ss_dssp             CCSSCEEESCCCTTCEEBTTBCSEEEEES
T ss_pred             CCCcccEEEEecCCCEEcCCCeEEEEECC
Confidence            34444468899999999999999999875

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=0.26  Score=40.02  Aligned_cols=60  Identities=25%  Similarity=0.337  Sum_probs=38.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEcCCe--------eceecCCCCeEEEEEeeCCCCEeCCCC-EEEEEE
Q 018779          104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV--------TIDVASPQAGVIQNLIAKEGETVEPGA-KIAVIS  165 (350)
Q Consensus       104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa--------~~ei~ap~~G~l~~i~~~eG~~v~vG~-~la~i~  165 (350)
                      +|+=-++++++||+|++||+|+++.-++.        ++-+-...+ .+..+....| .+..|+ +|..+.
T Consensus        81 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~-~~~~~~~~~g-~v~~g~~~i~~i~  149 (150)
T d2f3ga_          81 KGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMD-EIKELIKLSG-SVTVGETPVIRIK  149 (150)
T ss_dssp             TTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGG-GCSEEEECCS-EECTTTSEEEEEE
T ss_pred             CCcceEEEecCCCEECCCCEEEEEcHHHHHhcCCCCeeEEEEECcH-hcceeeecCC-cEeeCCcEEEEEE
Confidence            45567899999999999999999976432        211222222 1234445555 577775 677663