Citrus Sinensis ID: 018780

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Secondary Structure (PSIPRED)
cccccccHHHHccccccccccccccccccHHHHHHHHHHHcccEEEEEEccccccEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEccccHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccEEEcccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEccccccccccc
Coil and Loop (DISEMBL)
MMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIIllmfsptgkpslcngkRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRywtnpdkinsvEHLGQMENSLRDSLNHLRMHKenlgkqelmslecttqfqngicipfrmgseeqlqtlswipnndnrhmvlpedpnllshrdvecsgsssfgsysgyfgpgksseisnsgqdssllselsgTQSLrlqlggqcsyipynvsllndkfqpvsemniqenpvdyhvsgslevprpgfdttpgswastsgpcevtlfdERLYSQQLN
Flexible Loop (DISEMBL)
mmgrvklkikklentngrqatyakrkhgimkKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKfaqltpqeraKRKLESLEALKKTfkkldhdvnvQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDttpgswastsgpcevtLFDERLYSQQLN
Low Complexity Region (SEG)
MMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANElsilcdidiillMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECsgsssfgsysgyfgpgkssEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Disordered region (IsUnstruct)
*************************KHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQ*******************TFKKLDHDVNVQEFLG***********************HRRLRYWTNP*********************************ELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPN*************************************************************LRLQLGGQCSYIPYNVSLLNDKFQPVSEMNI****VDYHV************************CEVTLFD*********
Disordered Region (DISOPRED)
MMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQER*************************************************************PDKINSVEHLGQMENSLRDSLNHLRMHKENL**************************************************************************************************SLRLQLGGQCSYIPYNVSL*******************YHV*********************SGPCEVTLFD**L******
Disordered Region (DISEMBL)
MMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPG*****************LSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Disordered Region (DISPRO)
******LKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQL*********************L*SHRDVECSGSSSFGSYSGYFG***SS********SSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPxxxxxxxxxxxxxxxxxxxxxDHDVNVQEFLGTSSQTxxxxxxxxxxxxxxxxxxxxxLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.5	0.675	0.270	1e-13
Q9M2K8	256	Agamous-like MADS-box pro	no	no	0.225	0.308	0.420	2e-13
Q944S9	224	MADS-box transcription fa	no	no	0.205	0.321	0.465	4e-13
Q9ATE5	268	MADS-box protein FBP24 OS	N/A	no	0.48	0.626	0.274	4e-13
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.44	0.649	0.323	8e-13
P29383	258	Agamous-like MADS-box pro	no	no	0.368	0.5	0.345	9e-13
Q6H711	260	MADS-box transcription fa	no	no	0.425	0.573	0.283	1e-12
O82794	220	MADS-box protein AGL24 OS	no	no	0.151	0.240	0.566	1e-12
Q84NC5	227	MADS-box transcription fa	no	no	0.342	0.528	0.364	1e-12
Q9SBK9	254	Transcription factor CAUL	N/A	no	0.445	0.614	0.283	3e-12

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 109/207 (52%), Gaps = 32/207 (15%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP-SLCNG 60
           MGR K++IK++EN+  RQ T++KR+ G++KKANEL++LCD  + +++FS TGK    C+ 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  KRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
             S+ E+I ++   T                  F++++HD           Q + ++T  
Sbjct: 61  ACSLRELIEQYQHAT---------------NSHFEEINHD----------QQILLEMTR- 94

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKIN-SVEHLGQMENSLRDSLNHLRMHKENLGKQELMSL 179
              +++++ ++   +R +T  D  + +++ +  +E  L  S++ +R  K  L  Q+L +L
Sbjct: 95  ---MKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNL 151

Query: 180 ECTTQ-FQNGICIPFRMGSEEQLQTLS 205
               Q  ++     +RM +E Q   L+
Sbjct: 152 RRKEQILEDQNTFLYRMINENQQAALT 178

Probable transcription factor.
Zea mays (taxid: 4577)

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 61/88 (69%), Gaps = 9/88 (10%)

Query: 2  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK----PSL 57
          MGR +++IKK+EN N RQ T++KR++G++KKA ELSILCD ++ L++FS TGK     S+
Sbjct: 1  MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSV 60

Query: 58 CNGKRSIEEVIAKFAQLTPQERAKRKLE 85
          C     +E++++++   T     K++ E
Sbjct: 61 C-----MEQILSRYGYTTASTEHKQQRE 83

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 2  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK-PSLCNG 60
          MGR K++IK++EN   RQ TY+KR+ GIMKKA EL++LCD  + ++MFS TGK    C+ 
Sbjct: 1  MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61 KRSIEEVIAKFAQ 73
             I+ +  ++ Q
Sbjct: 61 STDIKGIFDRYQQ 73

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ATE5|FBP24_PETHY MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 47/215 (21%)

Query: 1   MMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP-SLCN 59
           +MGR K+++K++EN   RQ T++KR+ G++KK +ELS+LCD  I L++FS  GK    C+
Sbjct: 3   IMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCS 62

Query: 60  GKRSIEEVIAKFAQLT----PQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIE 115
              S+ ++I+++ Q T    P E  + +L   E  K     L+  +++Q + G      +
Sbjct: 63  QPHSMSQIISRYLQTTGASLPVEDNRVQLYD-EVAKMRRDTLNLQLSLQRYKG------D 115

Query: 116 DLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQE 175
           DL+                         +   E L ++E  L  +LN +R  K  L +Q+
Sbjct: 116 DLS-------------------------LAQYEELNELEKQLEHALNKIRARKLELMQQQ 150

Query: 176 LMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNN 210
           + +L+ T           +M  +E      W+ NN
Sbjct: 151 MENLKKTE----------KMLEKENHDMYQWLMNN 175

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 96/173 (55%), Gaps = 19/173 (10%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP-SLCNG 60
           MGR K++IK++ENT  RQ T++KR+ G++KKA+ELS+LCD ++ L++FS +GK     + 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  KRSIEEVIAKF-----AQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIE 115
             S++++I ++     A++T  +      E +  +K   +KL    N++  +G      E
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCE-MTRMKNENEKL--QTNIRRMMG------E 111

Query: 116 DLTN----QARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHL 164
           DLT+    +   L  QL     R+R   N   +  +E+L + E  L D  +HL
Sbjct: 112 DLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHL 164

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|P29383|AGL3_ARATH Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 36/165 (21%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK-PSLCNG 60
           MGR K+++K++EN   RQ T+AKR++G++KKA ELS+LCD +I LL+FS  GK    C+ 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  KRSIEEVIAK-----FAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIE 115
              +   + K     +A + P + AK                D     Q++L   S+ +E
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAK----------------DLQDKYQDYLKLKSR-VE 103

Query: 116 DLTNQAR-LLQSQLSEMHRRLRYWTNPDKINSVEHL-GQMENSLR 158
            L +  R LL  +LSEM            +N +EHL  Q++ SLR
Sbjct: 104 ILQHSQRHLLGEELSEM-----------DVNELEHLERQVDASLR 137

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 31/180 (17%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP-SLCNG 60
           MGR K++IK++EN   RQ T++KR+ G++KKANEL++LCD  + +++FS TGK    C+ 
Sbjct: 1   MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  KRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
             S+ E+I  +  +T                  F++++HD           Q   ++T  
Sbjct: 61  TCSLRELIEHYQTVT---------------NTHFEEINHD----------QQIFVEMTR- 94

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKIN-SVEHLGQMENSLRDSLNHLRMHKENLGKQELMSL 179
              +++++ ++   +R +T  D  N ++  +  +E  L  S+  +R  K  L  Q+L +L
Sbjct: 95  ---MRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNL 151

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 2  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 54
          M R K++IKK++N   RQ T++KR+ GI KKA+ELS+LCD D+ L++FS TGK
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGK 53

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 17/137 (12%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGR K+ IK+++NT  RQ T++KR+ G+MKKA EL+ILCD D+ L++FS TG+    +  
Sbjct: 1   MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSS 60

Query: 62  RSIEEVIAKFAQ--------LTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLG--TSS 111
            S++ +I ++ +        L P   AK     +  L++  + L H  N ++ LG   S+
Sbjct: 61  -SMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHH--NNRQLLGEEISN 117

Query: 112 QTIEDLTNQARLLQSQL 128
            T+ DL    +LLQ+Q+
Sbjct: 118 FTVRDL----QLLQNQV 130

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SBK9|CAL_BRARP Transcription factor CAULIFLOWER OS=Brassica rapa subsp. pekinensis GN=CAL PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 24/180 (13%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGR ++++K++EN   RQ T++KR+ G++KKA+E+SILCD ++ L++FS  GK    + +
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSSE 60

Query: 62  RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA 121
             +E+V+ ++ + +  E             K  K  D  VN Q           + + + 
Sbjct: 61  SCMEKVLERYERYSYAE-------------KQLKAPDSHVNAQ----------TNWSMEY 97

Query: 122 RLLQSQLSEMHRRLRYWTNPD-KINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
             L++++  + R  R++   D +  S++ L  +E  L  SL H+R  K  L  + L  L+
Sbjct: 98  SRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQ 157

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1.

Brassica rapa subsp. pekinensis (taxid: 51351)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224098892	363	predicted protein [Populus trichocarpa]	0.991	0.955	0.734	1e-152
255562902	360	mads box protein, putative [Ricinus comm	0.988	0.961	0.777	1e-152
224112247	336	predicted protein [Populus trichocarpa]	0.94	0.979	0.706	1e-141
356519846	360	PREDICTED: MADS-box transcription factor	0.985	0.958	0.68	1e-134
359491700	375	PREDICTED: myocyte-specific enhancer fac	0.988	0.922	0.628	1e-128
388513361	360	unknown [Lotus japonicus]	0.985	0.958	0.654	1e-124
449435336	339	PREDICTED: agamous-like MADS-box protein	0.954	0.985	0.643	1e-124
449478658	339	PREDICTED: LOW QUALITY PROTEIN: agamous-	0.954	0.985	0.643	1e-124
343160577	349	MADS1 protein [Aristolochia fimbriata] g	0.985	0.988	0.617	1e-119
343160541	361	MADS1 protein [Eschscholzia californica]	0.968	0.939	0.641	1e-119

>gi|224098892|ref|XP_002311308.1| predicted protein [Populus trichocarpa] gi|222851128|gb|EEE88675.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/354 (73%), Positives = 308/354 (87%), Gaps = 7/354 (1%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLC G 
Sbjct: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCKGA 60

Query: 62  RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            S IEEVI KFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+ EFLGTSSQTIEDLT+Q
Sbjct: 61  SSSIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEDLTSQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
           +RLLQ+QLS++H++L YWTNPD+I+S+EHLGQ+E+SLR+SLN +R HKE+LGKQ LMSLE
Sbjct: 121 SRLLQNQLSDVHKKLSYWTNPDEISSLEHLGQLESSLRESLNRIRSHKEHLGKQHLMSLE 180

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
           C +QFQN + +PFRMG E+QL  +SWIPN D++H++LPEDPNLL HRD ECS ++SFGSY
Sbjct: 181 CHSQFQNAMHVPFRMGVEQQLPPISWIPNTDSQHIMLPEDPNLLPHRDAECSATTSFGSY 240

Query: 241 SGYFGPGKSSEISNSGQDSSL---LSELSGTQSLRLQLGGQCSYIP--YNVSLLND-KFQ 294
           SGYFG GK+SE+S+SGQ+S +   L E +GT SLRLQ+ GQ  Y+P  YN++LLND KFQ
Sbjct: 241 SGYFGAGKNSELSSSGQESGMNGILDEFNGTASLRLQMAGQYPYLPGSYNLNLLNDSKFQ 300

Query: 295 PVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQ 348
           P +EM  Q++P D+HV+GS E P+PG+D+TP  WAST G C VT+FD+ LYSQ+
Sbjct: 301 PAAEMKTQKSPEDFHVNGSFEAPKPGYDSTPCGWASTPGSCAVTMFDDHLYSQE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562902|ref|XP_002522456.1| mads box protein, putative [Ricinus communis] gi|223538341|gb|EEF39948.1| mads box protein, putative [Ricinus communis]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/350 (77%), Positives = 315/350 (90%), Gaps = 4/350 (1%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIKKLENTNGRQATY KRKHGI+KKA ELSILCDIDIILLMFSPTGKPS+C GK
Sbjct: 1   MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGKPSICKGK 60

Query: 62  RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA 121
           RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+ EFLGTSSQTIE+LTNQ 
Sbjct: 61  RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEELTNQL 120

Query: 122 RLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLEC 181
           RLLQS LSE H+RL YWT PDKINS++HLGQ+ENSLR+SLN ++ HKE + KQ+LMSLEC
Sbjct: 121 RLLQSHLSEAHKRLSYWTCPDKINSIDHLGQLENSLRESLNQIQAHKEYIEKQQLMSLEC 180

Query: 182 TTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYS 241
            +QFQNG+ +PFRMG+E+QL  + WIPNND++ +VLPEDPNLL HRDVECS SSSFGSYS
Sbjct: 181 NSQFQNGMHLPFRMGAEQQLPPMQWIPNNDSQQIVLPEDPNLLPHRDVECSASSSFGSYS 240

Query: 242 GYFGPGKSSEISNSGQDSSL---LSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPVS 297
           GYFG GKSSE+SNS Q++ L   L+EL+GT SLRLQL GQ  ++PYN+++LND KFQP +
Sbjct: 241 GYFGTGKSSELSNSSQENGLNGILNELNGTASLRLQLAGQYPHLPYNLNMLNDTKFQPAA 300

Query: 298 EMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQ 347
           +MNIQE+PVD+HV+GS EVP+PG+DTTPGSWAS+SGPC VT+FDE+LYS+
Sbjct: 301 DMNIQESPVDFHVNGSFEVPKPGYDTTPGSWASSSGPCAVTMFDEQLYSR 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112247|ref|XP_002316130.1| predicted protein [Populus trichocarpa] gi|222865170|gb|EEF02301.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/351 (70%), Positives = 293/351 (83%), Gaps = 22/351 (6%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIKKLENTNGRQAT+AKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLC G 
Sbjct: 1   MGRVKLKIKKLENTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCKGA 60

Query: 62  RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA 121
            SIEEVI KFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+ EFLGTSSQTIEDLT+Q+
Sbjct: 61  SSIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEDLTSQS 120

Query: 122 RLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLEC 181
           RLLQ+QLS++H+RL YWTNPDKINS+EHLGQ+ENSLR+SLN +R                
Sbjct: 121 RLLQNQLSDVHKRLSYWTNPDKINSIEHLGQLENSLRESLNQIR---------------- 164

Query: 182 TTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYS 241
           + +FQN + +PFRMG+E+QL  L WIPNND++H++LPE+ NLL HRD EC+ S+SFGSYS
Sbjct: 165 SCKFQNEMHVPFRMGAEQQLSPLLWIPNNDSQHIMLPEEQNLLPHRDAECTASTSFGSYS 224

Query: 242 GYFGPGKSSEISNSGQDSSL---LSELSGTQSLRLQLGGQCSYI--PYNVSLLND-KFQP 295
           GYFG GK+SE+S+SGQ+S +   L EL+GT SLRL+L GQ  Y+  PYN++LLND KFQP
Sbjct: 225 GYFGAGKNSELSSSGQESGMNGILDELNGTASLRLRLAGQYPYLPGPYNLNLLNDTKFQP 284

Query: 296 VSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYS 346
            +EMNIQ+ P D++VSGS E P+P +D+ P  WASTSG C VT+FD+ LY+
Sbjct: 285 AAEMNIQKGPGDFNVSGSFEAPKPEYDSGPHGWASTSGSCAVTMFDDHLYA 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519846|ref|XP_003528580.1| PREDICTED: MADS-box transcription factor 3-like [Glycine max]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/350 (68%), Positives = 286/350 (81%), Gaps = 5/350 (1%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIK+LENTNGRQATYAKRK+GIMKKA E+SILCDIDIILLMF+P GKPSLC G+
Sbjct: 1   MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAEISILCDIDIILLMFAPNGKPSLCRGR 60

Query: 62  RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            S  EEVIAKF QLTPQERAKRKLE+LEALKKTFKKLDHDVNVQEF+GTSSQTIEDL+NQ
Sbjct: 61  HSNFEEVIAKFGQLTPQERAKRKLETLEALKKTFKKLDHDVNVQEFMGTSSQTIEDLSNQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK-QELMSL 179
           ARLLQ+Q+SE H+RL +WT  DKI++V+ LGQMENSLR+SLN +R  KEN+ K Q+LMSL
Sbjct: 121 ARLLQTQISETHKRLSHWTEFDKISNVDQLGQMENSLRESLNQIRTRKENIKKQQQLMSL 180

Query: 180 ECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGS 239
           +C  QF N + IPFRM  E+QLQ LSWI N+DN ++VLPED N+  H+DVE S SSSFGS
Sbjct: 181 QCNNQF-NEMNIPFRMSVEQQLQPLSWIANDDNHNIVLPEDSNMFLHKDVEGSTSSSFGS 239

Query: 240 YSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPVSE 298
           +  Y G    +++SNS Q++ +LS++S T  +RLQL G   Y+PYN +L N+ KFQP +E
Sbjct: 240 HVSYLGSSIKNDMSNSAQENGVLSDMSNTAPMRLQLNGHFPYLPYNFNLPNNLKFQPTAE 299

Query: 299 MNIQENPVDYHVSGSLEVPRPGFDT-TPGSWASTSGPCEVTLFDERLYSQ 347
           +N  ENPVDYHV+G  E PR G+D+     WASTSGPC VT+FDE+LY+Q
Sbjct: 300 INPYENPVDYHVNGGFEAPRSGYDSNNHHDWASTSGPCGVTMFDEQLYAQ 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491700|ref|XP_002281961.2| PREDICTED: myocyte-specific enhancer factor 2A homolog [Vitis vinifera] gi|297733964|emb|CBI15211.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/355 (62%), Positives = 285/355 (80%), Gaps = 9/355 (2%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIK+LE+T+ RQ TY+KR++GI+KKA ELSILCDI+IILLMFSPTG+P+L +G 
Sbjct: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIEIILLMFSPTGRPTLFHGA 60

Query: 62  RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           RS IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+Q+FLG S+QTIE+LTNQ
Sbjct: 61  RSDIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNLQDFLGASTQTIEELTNQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
           ARLLQ+QL+E+H+RL YW+NPDK++S EHL QME+SLR+SLN +R+HKEN GK +LMSLE
Sbjct: 121 ARLLQAQLTEVHKRLSYWSNPDKVDSTEHLRQMEDSLRESLNRIRVHKENFGKHQLMSLE 180

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
           C +QFQNG+ +P  M   ++ Q LSW+PNN+N+H++LPE+P+ L  RD+ECS  +S   Y
Sbjct: 181 CASQFQNGMHLPLIMDGVQEAQPLSWLPNNENQHLILPEEPSYLPQRDMECSADASIPGY 240

Query: 241 SGYFGPGKSSEISNS------GQDSSLLSELSGTQSLRLQLGGQCSYIPY-NVSLLND-K 292
           SGY+  GK +EI NS      GQ+ S L++LSG  +LRLQL  Q  Y P+ N++L ++ K
Sbjct: 241 SGYYSTGKQTEIGNSGQVDEQGQEGSALNQLSGNSNLRLQLSEQYLYSPFGNLNLPDEKK 300

Query: 293 FQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQ 347
            +P  EMN+Q NPVDY V+G+ E+P P +D    +W S SGPC + +FDE  +SQ
Sbjct: 301 LKPEMEMNLQGNPVDYQVNGNFEIPAPIYDNRQHTWVSASGPCSIAMFDENSFSQ 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513361|gb|AFK44742.1| unknown [Lotus japonicus]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/350 (65%), Positives = 279/350 (79%), Gaps = 5/350 (1%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIK+LENTNGRQATYAKRK+GI+KKA+ELSILCDIDIILLMFSP+GKPS+C G+
Sbjct: 1   MGRVKLKIKRLENTNGRQATYAKRKNGIIKKASELSILCDIDIILLMFSPSGKPSICRGR 60

Query: 62  RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            S +EEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+QEF+GTSSQ IED++N 
Sbjct: 61  HSNLEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFMGTSSQRIEDVSNH 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK-QELMSL 179
           A LLQ+Q+SE+ +RL  WT  DKI+SV  LGQMENS+R+SL  ++ HKEN+ K Q+L++L
Sbjct: 121 AGLLQNQISEIQKRLSNWTEIDKISSVYQLGQMENSVRESLKQIQTHKENIKKQQQLVTL 180

Query: 180 ECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGS 239
           +C +QF N +  PFRM  ++ LQ LSWI N D++++VLPED NL  ++DVE S SSSFGS
Sbjct: 181 QCNSQF-NEMSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGS 239

Query: 240 YSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPY-NVSLLNDKFQP-VS 297
           Y+ Y G     EIS SGQ++ +L ++S T  LRLQL GQ  Y+PY    L N K QP  +
Sbjct: 240 YASYLGSSSKLEISTSGQENCVLIDMSSTAPLRLQLSGQIPYLPYNFNLLNNLKLQPTAA 299

Query: 298 EMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQ 347
           E+N  +NPVDYHV GS E PRPG+D+    WASTSGP  VT+FDE LY+Q
Sbjct: 300 EINPHKNPVDYHVDGSFEDPRPGYDSNQHGWASTSGPRAVTMFDEHLYAQ 349

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435336|ref|XP_004135451.1| PREDICTED: agamous-like MADS-box protein AGL9 homolog [Cucumis sativus]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/348 (64%), Positives = 281/348 (80%), Gaps = 14/348 (4%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIK+LENTNGRQ+TY+KRK+GIMKKA ELSILCD+DIILLMFSPTGKP+L   K
Sbjct: 1   MGRVKLKIKRLENTNGRQSTYSKRKNGIMKKAKELSILCDVDIILLMFSPTGKPNLSCEK 60

Query: 62  RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA 121
           RS EEVIA+FAQ TPQER KRK+ES+++L+KTFKKLDHDVN+ + LGTSSQTIEDLT QA
Sbjct: 61  RSFEEVIARFAQQTPQERTKRKMESIDSLRKTFKKLDHDVNIDDLLGTSSQTIEDLTGQA 120

Query: 122 RLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLEC 181
           +LL++QLSE+H+RL  W NPDKIN+V+HL QME+S+R++LN +R+HK+NL K   + LE 
Sbjct: 121 KLLRTQLSEVHQRLSCWRNPDKINNVDHLSQMEDSMRETLNQVRLHKDNLQKHPPVPLEF 180

Query: 182 TTQFQNGICIPFRMGSEEQLQTL---SWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFG 238
           T   Q+G+ + F M  E+Q+Q L   SWIP ND++++VL +DPN + HRD ECS SSSF 
Sbjct: 181 TN--QDGMHLTFDMSVEQQIQQLQHFSWIP-NDSQNIVLHDDPNFVLHRDAECSASSSFT 237

Query: 239 SYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPVS 297
           SY GYFG G+S EISNSGQ++ +L ELS T++LR QLGGQ SY+ YNV+  ND  FQP +
Sbjct: 238 SYPGYFGTGRSPEISNSGQENGVLPELSRTEALRPQLGGQNSYMSYNVNFFNDPTFQPAA 297

Query: 298 EMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLY 345
           EMN+  NPVDYHV+G+L       DTT  +WAS+SGPC V+L D+RL+
Sbjct: 298 EMNLPINPVDYHVNGNL-------DTTQHNWASSSGPCAVSLLDDRLF 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478658|ref|XP_004155383.1| PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL9 homolog [Cucumis sativus]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/348 (64%), Positives = 281/348 (80%), Gaps = 14/348 (4%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIK+LENTNGRQ+TY+KRK+GIMKKA ELSILCD+DIILLMFSPTGKP+L   K
Sbjct: 1   MGRVKLKIKRLENTNGRQSTYSKRKNGIMKKAKELSILCDVDIILLMFSPTGKPNLSCEK 60

Query: 62  RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA 121
           RS EEVIA+FAQ TPQER KRK+ES+++L+KTFKKLDHDVN+ + LGTSSQTIEDLT QA
Sbjct: 61  RSFEEVIARFAQQTPQERTKRKMESIDSLRKTFKKLDHDVNIDDLLGTSSQTIEDLTGQA 120

Query: 122 RLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLEC 181
           +LL++QLSE+H+RL  W NPDKIN+V+HL QME+S+R++LN +R+HK+NL K   + LE 
Sbjct: 121 KLLRTQLSEVHQRLSCWRNPDKINNVDHLSQMEDSMRETLNQVRLHKDNLQKHPPVPLEF 180

Query: 182 TTQFQNGICIPFRMGSEEQLQTL---SWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFG 238
           T   Q+G+ + F M  E+Q+Q L   SWIP ND++++VL +DPN + HRD ECS SSSF 
Sbjct: 181 TN--QDGMHLTFDMSVEQQIQQLQHFSWIP-NDSQNIVLHDDPNFVLHRDAECSASSSFT 237

Query: 239 SYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPVS 297
           SY GYFG G+S EISNSGQ++ +L ELS T++LR QLGGQ SY+ YNV+  ND  FQP +
Sbjct: 238 SYPGYFGTGRSPEISNSGQENGVLPELSRTEALRPQLGGQNSYMSYNVNXFNDPTFQPAA 297

Query: 298 EMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLY 345
           EMN+  NPVDYHV+G+L       DTT  +WAS+SGPC V+L D+RL+
Sbjct: 298 EMNLPINPVDYHVNGNL-------DTTQHNWASSSGPCAVSLLDDRLF 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160577|emb|CAY39417.1| MADS1 protein [Aristolochia fimbriata] gi|343160579|emb|CAY39418.1| MADS1 protein [Aristolochia fimbriata]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/353 (61%), Positives = 277/353 (78%), Gaps = 8/353 (2%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIKKLE++N R  TY+KRK GIMKKA ELSILCDIDI LLMFSP GKPSLC G+
Sbjct: 1   MGRVKLKIKKLESSNNRCVTYSKRKTGIMKKAKELSILCDIDIALLMFSPNGKPSLCLGE 60

Query: 62  RS---IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLT 118
           RS   IE+VI++FAQLTPQERAKRKLESLE LKKTFKKLDHDVNVQ+FLGT +QT+E+LT
Sbjct: 61  RSSSNIEDVISRFAQLTPQERAKRKLESLETLKKTFKKLDHDVNVQDFLGTGTQTVEELT 120

Query: 119 NQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMS 178
           NQ+RLLQ+Q++EMH++L Y++NP+KIN+++ +  ME +LRDS+N ++ HK N  KQ+LMS
Sbjct: 121 NQSRLLQAQVAEMHKKLSYYSNPEKINNLDQIRLMEETLRDSINRVQTHKVNFEKQQLMS 180

Query: 179 LECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFG 238
           LEC  QFQNG+ +P  MG E+Q QTLSW+ NND R +++ E+PNL+SHRD+ECS S+   
Sbjct: 181 LEC-GQFQNGMHLPLAMGGEQQAQTLSWLANNDGRAILMTENPNLVSHRDIECSSSAPVP 239

Query: 239 SYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPVS 297
           S+S YF  GK +E+  SGQ+   L+EL+  + LRLQLGGQ  Y PYN++L+++ KF+P  
Sbjct: 240 SFSSYFNNGK-TEMDTSGQEGGTLNELNPNECLRLQLGGQFPYEPYNLNLIDEKKFKPEG 298

Query: 298 EMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN 350
           +M + E  VDYHVSG  E  RP +D    SWASTSG C V +F+E  + QQ N
Sbjct: 299 DM-LHEQSVDYHVSG-FEQSRPEYDANHHSWASTSGHCGVPMFEEHTFQQQPN 349

Source: Aristolochia fimbriata

Species: Aristolochia fimbriata

Genus: Aristolochia

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160541|emb|CAX16990.1| MADS1 protein [Eschscholzia californica] gi|343160543|emb|CAX16991.1| MADS1 protein [Eschscholzia californica]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 268/346 (77%), Gaps = 7/346 (2%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           MGRVKLKIK+LENT+GRQ TY+KR+ GI+KKA ELSILCDIDI LLMFSPTGKP+LC G 
Sbjct: 1   MGRVKLKIKRLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPTLCLGD 60

Query: 62  RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           RS IE+VIAKFAQLTPQERAKRKLESLEALKKTFKKL+HDVN+Q+FLGTS+QT+EDLTNQ
Sbjct: 61  RSNIEDVIAKFAQLTPQERAKRKLESLEALKKTFKKLEHDVNIQDFLGTSTQTVEDLTNQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
             LLQ QLSEM  RLR WT+P+KIN+V+HL  ME S+++SLN +  HKENLGKQ+LMSLE
Sbjct: 121 RNLLQRQLSEMVERLRCWTDPEKINNVDHLNAMEQSIKESLNRIHTHKENLGKQQLMSLE 180

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
           C  QFQNG+ IP  MG E+Q Q+LSWIPN+D++H++L ED +LL  RD+ECS   S  +Y
Sbjct: 181 C-AQFQNGMQIPLGMGGEQQPQSLSWIPNHDSQHLMLSEDTSLLPQRDIECSTDPSLQNY 239

Query: 241 SGYFGPGKSSEISNSGQD--SSLLSELSGTQSLRLQLGGQCSYIPYNVSLL-NDKFQPVS 297
           S Y G GK  EI NSGQD   S L + S    L LQ+GGQ  Y PY+  L+ N+K++  S
Sbjct: 240 SSYLGMGKQVEIDNSGQDGIGSSLPDFSANACLSLQIGGQFPYQPYDFDLVNNNKYKNDS 299

Query: 298 EMNIQENPVDYHVS--GSLEVPRPGFDTTPGSWASTSGPCEVTLFD 341
           EM++QE  +DY V    S   PR  +D +  +WASTSG C V +FD
Sbjct: 300 EMSLQEPRLDYQVGNINSFGPPRHRYDASDQAWASTSGQCSVPMFD 345

Source: Eschscholzia californica

Species: Eschscholzia californica

Genus: Eschscholzia

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2056760	386	AGL30 "AGAMOUS-like 30" [Arabi	0.814	0.738	0.504	8.5e-77
TAIR|locus:2034949	389	AGL65 "AGAMOUS-like 65" [Arabi	0.814	0.732	0.493	2.8e-66
TAIR|locus:2007186	344	AGL94 "AGAMOUS-like 94" [Arabi	0.942	0.959	0.437	3e-62
TAIR|locus:2029386	332	AGL66 "AGAMOUS-like 66" [Arabi	0.548	0.578	0.331	7.1e-25
TAIR|locus:2030621	335	AGL104 "AGAMOUS-like 104" [Ara	0.58	0.605	0.322	2.4e-24
TAIR|locus:2029411	252	AGL67 "AGAMOUS-like 67" [Arabi	0.54	0.75	0.296	2e-17
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.52	0.805	0.303	1.9e-12
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.294	0.522	0.307	5.4e-10
TAIR|locus:2057741	109	AGL33 "AGAMOUS-like 33" [Arabi	0.231	0.743	0.378	9e-10
TAIR|locus:2177125	268	AGL15 "AGAMOUS-like 15" [Arabi	0.465	0.608	0.260	3.9e-09

TAIR|locus:2056760 AGL30 "AGAMOUS-like 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 154/305 (50%), Positives = 203/305 (66%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGRVKLKIKKLENTNGRQ+T+AKRK+GI+KKANE            MFSPTGK ++C G 
Sbjct:     1 MGRVKLKIKKLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAAICCGT 60

Query:    62 RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
             RS +EEVIAKF+Q+TPQER KRK ESLE LKKTF+KLDHDVN++EF+ +S+ T+EDL+ Q
Sbjct:    61 RSSMEEVIAKFSQVTPQERTKRKFESLENLKKTFQKLDHDVNIREFIASSNSTVEDLSTQ 120

Query:   121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQE-LMSL 179
             AR+LQ+++SE+H RL YWT PDKIN+VEHLGQ+E S+R SL+ LR HKE+ G+Q+  M +
Sbjct:   121 ARILQARISEIHGRLSYWTEPDKINNVEHLGQLEISIRQSLDQLRAHKEHFGQQQQAMQI 180

Query:   180 E--------CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVEC 231
             E         T   Q+GI IP     E+QLQ++SWI N++  ++V  E+ N +  R+VEC
Sbjct:   181 ENANFVKDWSTCSMQDGIQIPL----EQQLQSMSWILNSNTTNIVT-EEHNSIPQREVEC 235

Query:   232 XXXXXXXXXXXXXXXXXXXEISNSGQDSSLLSELSGTQ-----SLRLQLGGQCSYIPYNV 286
                                E++  GQ++S L EL+  Q     S + Q     +   YN 
Sbjct:   236 SASSSFGSYPGYFGTGKSPEMTIPGQETSFLDELNTGQLKQDTSSQQQFTNNNNITAYNP 295

Query:   287 SLLND 291
             +L ND
Sbjct:   296 NLHND 300

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2034949 AGL65 "AGAMOUS-like 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 145/294 (49%), Positives = 189/294 (64%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGRVKLKIK+LE+T+ RQ TY KRK+GI+KKA E            MFSPTG+ +  +G+
Sbjct:     1 MGRVKLKIKRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRATAFHGE 60

Query:    62 RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
              S IEEVI+KFAQLTPQER KRKLESLEALKKTFKKLDHDVN+ +FLG  +QTIE L+NQ
Sbjct:    61 HSCIEEVISKFAQLTPQERTKRKLESLEALKKTFKKLDHDVNIHDFLGARNQTIEGLSNQ 120

Query:   121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
               + Q+QL E HRRL  WTN D+I + EHL  +E SLR S+  +++HKE+  K +L+ +E
Sbjct:   121 VAIYQAQLMECHRRLSCWTNIDRIENTEHLDLLEESLRKSIERIQIHKEHYRKNQLLPIE 180

Query:   181 C-TTQFQNGICIPFRMGSEEQLQ---TLSWIPNNDNRHMVLPEDPNLLSHRDVECXXXXX 236
             C TTQF +GI +P  MG    +Q   ++SW+P+ND++  +LP D + L HR+++      
Sbjct:   181 CATTQFHSGIQLPMAMGGNSSMQEAHSMSWLPDNDHQQTILPGDSSFLPHREMDGSIPVY 240

Query:   237 XXXXXXXXXXXXXXEISNSGQDSSLLSELSGTQSLRLQ-LGGQCSY-IPYNVSL 288
                             SN GQ    L E  G   L LQ LG + SY  P+  +L
Sbjct:   241 SSCFFESTKPEDQI-CSNPGQQFEQL-EQQGNGCLGLQQLGEEYSYPTPFGTTL 292

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

TAIR|locus:2007186 AGL94 "AGAMOUS-like 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 155/354 (43%), Positives = 210/354 (59%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGRVKLKIKKL+N NGRQ TY KR+HGIMKKA E            MFSP GK S+C GK
Sbjct:     1 MGRVKLKIKKLQNMNGRQCTYTKRRHGIMKKAKELSILCDIDVVLLMFSPMGKASICIGK 60

Query:    62 RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGT-SSQTIEDLTNQ 120
              SI EVIAKFAQL+PQERAKRKLE+LEAL+KTF K +HD+++ +FL   S+ T+E L+ +
Sbjct:    61 HSIGEVIAKFAQLSPQERAKRKLENLEALRKTFMKANHDIDISKFLDRISTPTVEVLSEK 120

Query:   121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK---QELM 177
              R LQ+QLS++H RL YWT+ D I+SV+ L Q+E+SLR SL  +   K ++ +   Q+LM
Sbjct:   121 IRFLQTQLSDIHTRLSYWTDVDNIDSVDVLQQLEHSLRQSLAQIYGRKASMPQRQQQQLM 180

Query:   178 SLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPE-DPNLLSH---RDVECXX 233
             S +C  Q Q  I I F M  E+QL+  SW+  ++N ++ + E DPNL  H   +D+ C  
Sbjct:   181 SSQCKNQLQTEIDIDFGMEMEQQLENFSWVRTDENMNVPIEEEDPNLQLHHMYKDITCSA 240

Query:   234 XXXXXXXXXXXXXXXXXEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-K 292
                              +I    +  S+     GT +   Q   Q S    N+S LND K
Sbjct:   241 SSALGNYSGLFSKSS--DILQKLETGSI----PGTSADPNQ---QFS----NLSFLNDQK 287

Query:   293 FQPVSEMNIQENPVDYHVSGSLEVP-RPGFDTTPGSWASTSGPCEVTLFDERLY 345
              + ++E N+  +P DY+VS  LE   +P         +S + P  V +FD+ LY
Sbjct:   288 LKQLAEWNLLGSPADYYVSQILEASYKPQIGGKNNGASSETLPY-VAVFDDPLY 340

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2029386 AGL66 "AGAMOUS-like 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
 Identities = 69/208 (33%), Positives = 114/208 (54%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGRVKL+IK++ENT  RQ T++KR++G++KKA E            MFSP+ + SL +GK
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSGK 60

Query:    62 RSIEEVIAKFAQLTPQER---------AKRK-LESLEALKKTFKKL--DHDVNVQEFLGT 109
               IE+V +++  L+ QER         ++R   +S E L +T ++L  ++D+ +Q    T
Sbjct:    61 TRIEDVFSRYINLSDQERENALVFPDQSRRPDFQSKEYLLRTLQQLKAENDIALQLTNPT 120

Query:   110 S-SQTIEDLTNQARLLQSQLSEMHRRLR-YWTNPDKINSVEHLGQMENSLRDSLNHLRMH 167
             + +  +E+L ++   LQ QL      LR Y  +P +  ++E     E  L D+L  +   
Sbjct:   121 AINSDVEELEHEVYKLQQQLLMAEEELRKYEPDPIRFTTMEEYETCEKQLMDTLTRVNQR 180

Query:   168 KEN-LGKQELMSLECTT-QFQNGICIPF 193
             +E+ L + +L S E +  Q Q  +  PF
Sbjct:   181 REHILSQDQLSSYEASALQQQQSMGGPF 208

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2030621 AGL104 "AGAMOUS-like 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 72/223 (32%), Positives = 115/223 (51%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGRVKL+IK++ENT  RQ T++KR++G++KKA E            MFSP+ + SL +GK
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGK 60

Query:    62 RSIEEVIAKFAQLTPQERAK--------RK--LESLEALKKTFKKL--DHDVNVQEFLGT 109
               IE+V ++F  L  QER          R+  +++ E L +  ++L  ++D+ +Q     
Sbjct:    61 TRIEDVFSRFINLPKQERESALYFPDQNRRPDIQNKECLLRILQQLKTENDIALQVTNPA 120

Query:   110 S-SQTIEDLTNQARLLQSQLSEMHRRLR-YWTNPDKINSVEHLGQMENSLRDSLNHLRMH 167
             + +  +E+L ++   LQ QL      LR Y  +P +  ++E     E  L D+L H+   
Sbjct:   121 AINSDVEELEHEVCRLQQQLQMAEEELRRYEPDPIRFTTMEEYEVSEKQLLDTLTHVVQR 180

Query:   168 KENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNN 210
             +++L    L S E +T  Q  I  PF     E      W+P N
Sbjct:   181 RDHLMSNHLSSYEASTM-QPNIGGPFVNDVVE-----GWLPEN 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009555 "pollen development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2029411 AGL67 "AGAMOUS-like 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 61/206 (29%), Positives = 111/206 (53%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGRVKL++K++E +  RQ T++KRK G++KKA E            MFSP+ +  L +G+
Sbjct:     1 MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query:    62 RSIEEVIAKFAQLTPQER---------AKRK-LESLEALKKTFKKL----DHDVNVQEFL 107
               IE+V+A++  L  QER         +KR+ +++ E L +T +KL    D  + + E  
Sbjct:    61 TRIEDVLARYINLPDQERENAIVFPDQSKRQGIQNKEYLLRTLEKLKIEDDMALQINEPR 120

Query:   108 GTSSQT-IEDLTNQARLLQSQLSEMHRRLR-YWTNPDKINSVEHLGQMENSLRDSLNHLR 165
               ++ + +E+L  +   LQ QL      LR +  +P ++ S+E +   E +L ++L  + 
Sbjct:   121 PEATNSNVEELEQEVCRLQQQLQISEEELRKFEPDPMRLTSMEEIEACEANLINTLTRVV 180

Query:   166 MHKENLGKQELMSLECTTQFQNGICI 191
               +E+L ++   + +   Q  +GI +
Sbjct:   181 QRREHLLRKSCEA-QSNQQSMDGILL 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 170 (64.9 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 62/204 (30%), Positives = 96/204 (47%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGK------P 55
             MGR K++IKK+EN   RQ TY+KR++GI KKA+E            MFS TGK      P
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    56 SLCNGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIE 115
             S    K+  ++  +           +R  E+++ LK T  KL  ++  Q  LG     ++
Sbjct:    61 STTT-KKMYDQYQSTVGFDLWSSHYERMKETMKKLKDTNNKLRREIR-QRVLGEDFDGLD 118

Query:   116 --DLTNQARLLQSQLSEMHRRLRYW---TNPDKINS-VEHLGQMENSLRDSLNHLRMH-- 167
               DLT+  + +Q  L+ +  R +Y    T  D     V +L Q   +LR  L++  +H  
Sbjct:   119 MNDLTSLEQHMQDSLTLVRER-KYHVIKTQTDTCRKRVRNLEQRNGNLR--LDYETIHQL 175

Query:   168 --KENLGKQELMSLECTTQFQNGI 189
               K + G+ E    E    + NG+
Sbjct:   176 DKKYDTGENE-GDYESVVAYSNGV 198

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 148 (57.2 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 32/104 (30%), Positives = 60/104 (57%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKP-SLCNG 60
             MGR K++IK++ENT+ RQ TY+KRK+GI+KKA E            ++  +GK    C+ 
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 KRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQ 104
             K ++ +++ ++ +L+  +    K E+L+      KK +  + ++
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIE 104

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2057741 AGL33 "AGAMOUS-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.0e-10, P = 9.0e-10
 Identities = 31/82 (37%), Positives = 48/82 (58%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGR KLK+K++E+   R + ++KRK G+ KKA E            + SPT KP++ N +
Sbjct:    17 MGRKKLKLKRIESLKERSSKFSKRKKGLFKKAEEVALLCDSDIMLIVVSPTEKPTVFNTR 76

Query:    62 -RSIEEVIAKFAQLTPQERAKR 82
              RS   ++ +F  L+ QER +R
Sbjct:    77 SRSFHTILERFCMLSLQEREER 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2177125 AGL15 "AGAMOUS-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 44/169 (26%), Positives = 84/169 (49%)

Query:     2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 61
             MGR K++IK++EN N RQ T++KR+ G++KKA E            +FS +GK       
Sbjct:     1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGK-LFEYSS 59

Query:    62 RSIEEVIAKFA--QLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTN 119
               +++ ++++   Q +   +A+     ++ LK    KL       +  G +  T ++L +
Sbjct:    60 TGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQS 119

Query:   120 -QARLLQSQLSEMHRRLRYWTNP-DKINSVEHLGQMEN-SLRDSLNHLR 165
              + +L  + ++   R+ R  TN  ++    E   ++EN +LR  +  LR
Sbjct:   120 LEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELR 168

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0060862 "negative regulation of floral organ abscission" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0060867 "fruit abscission" evidence=IMP

GO:2000692 "negative regulation of seed maturation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IDA;TAS

GO:0045487 "gibberellin catabolic process" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-24
smart00432	59	smart00432, MADS, MADS domain	9e-24
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	4e-23
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	8e-22
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-14
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	6e-06

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 94.2 bits (235), Expect = 3e-24
 Identities = 33/80 (41%), Positives = 54/80 (67%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 62
          GR K+KIK++EN   R  T++KR+ G+ KKA+ELS LC  ++ ++++SP+GK  +     
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 63 SIEEVIAKFAQLTPQERAKR 82
           +E VI++F  L+  ER K+
Sbjct: 61 EVEGVISRFEVLSALERKKK 80

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 92.2 bits (230), Expect = 9e-24
 Identities = 29/53 (54%), Positives = 44/53 (83%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP 55
          GR K++IK++EN   RQ T++KR++G+ KKA+ELS+LCD ++ L++FSPTGK 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKL 53

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 90.7 bits (226), Expect = 4e-23
 Identities = 27/53 (50%), Positives = 44/53 (83%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP 55
          GR K++IK++EN   RQ T++KR++G+ KKA+ELS+LCD ++ +++FSP+GK 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKL 53

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 87.6 bits (218), Expect = 8e-22
 Identities = 30/74 (40%), Positives = 56/74 (75%), Gaps = 3/74 (4%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP-SLCNGK 61
          GR K++IK++EN+  RQ T++KR++G++KKA+ELS+LCD ++ L++FS +GK     +  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP- 59

Query: 62 RSIEEVIAKFAQLT 75
           S+E++I ++ + +
Sbjct: 60 -SMEKIIERYQKTS 72

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 24/45 (53%), Positives = 38/45 (84%)

Query: 10 KKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 54
          K++EN + RQ T++KR++GI KKA+ELS+LCD ++ +++FS TGK
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGK 45

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 2   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 54
           +   K+ I  + N   R  T++KRKHGI KKA ELS+L   +++LL+ S  G 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGL 133

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.96
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.94
smart00432	59	MADS MADS domain.	99.93
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.92
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.88
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.71
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.39
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.29
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.38

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=3.1e-34  Score=259.09  Aligned_cols=175  Identities=30%  Similarity=0.467  Sum_probs=124.7

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCC-CcHHHHHHHHhhcChHHHH
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK-RSIEEVIAKFAQLTPQERA   80 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~-ssme~ILeRY~~~s~~er~   80 (350)
                      |||+||+|+||||+++|||||+|||+||||||+||||||||+||||||||+|++|+|++. .+|.+|++||...+..++.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999998753 3399999999998877665


Q ss_pred             HhhHHHHHHHHHH-HHhhhhhhhhHHhhccCchhHHHHHHHHHHHHHHHHHHh---HhhccccCCC-CCCCH-HHHHHHH
Q 018780           81 KRKLESLEALKKT-FKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMH---RRLRYWTNPD-KINSV-EHLGQME  154 (350)
Q Consensus        81 k~~~~~~e~L~k~-~~kL~~e~~iqe~~~~~~~~vE~L~~e~~kLk~qle~lq---~rlr~~~ged-~~LSv-eEL~qLE  154 (350)
                      +........+... +.++........      .....+......+....+.+.   ...+.+.+++ ..+++ ++|..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~  154 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEE------LKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLE  154 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhh------ccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchh
Confidence            5443333333211 111110000000      000112222333333333333   3356666766 67788 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hhhhh
Q 018780          155 NSLRDSLNHLRMHKENLGKQELM-SLECT  182 (350)
Q Consensus       155 ~qLe~sLk~IR~RK~qL~~~ql~-~Lq~k  182 (350)
                      .+|+.++..+|.++...+.+++. .++.+
T Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (195)
T KOG0014|consen  155 SQLESSLHNSRSSKSKPLSDSNFQVLQEK  183 (195)
T ss_pred             hHHHHhhcCCCCCCCcCCcchhhhhhccc
Confidence            99999999999999888877765 44433

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=4e-30  Score=200.12  Aligned_cols=73  Identities=41%  Similarity=0.787  Sum_probs=70.1

Q ss_pred             CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcCh
Q 018780            3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTP   76 (350)
Q Consensus         3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~   76 (350)
                      ||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++ +++++||+||.+.+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999975 778999999998764

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.94  E-value=2.4e-28  Score=192.77  Aligned_cols=79  Identities=42%  Similarity=0.741  Sum_probs=73.5

Q ss_pred             CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcChHHHHH
Q 018780            3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAK   81 (350)
Q Consensus         3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~~er~k   81 (350)
                      ||+||+|++|+|+.+|+|||+|||.||+|||+||||||||+||+|||||+|++++|++.+++..||+||...+..++.+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence            8999999999999999999999999999999999999999999999999999999876444999999999998776654

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.93  E-value=9.1e-27  Score=171.75  Aligned_cols=58  Identities=50%  Similarity=0.883  Sum_probs=56.5

Q ss_pred             CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCC
Q 018780            3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG   60 (350)
Q Consensus         3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s   60 (350)
                      ||+||+|++|+|+..|++||+|||.||+|||+||||||||+||||||||+|+++.|++
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999999864

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.92  E-value=2.9e-26  Score=169.14  Aligned_cols=58  Identities=47%  Similarity=0.836  Sum_probs=56.6

Q ss_pred             CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCC
Q 018780            3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG   60 (350)
Q Consensus         3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s   60 (350)
                      ||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|++++|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999864

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.88  E-value=3.8e-25  Score=158.15  Aligned_cols=51  Identities=47%  Similarity=0.827  Sum_probs=46.7

Q ss_pred             EEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCC
Q 018780           10 KKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG   60 (350)
Q Consensus        10 krIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s   60 (350)
                      |+|||+..|++||+|||.||+|||.|||+||||+||||||||+|+++.|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.71  E-value=1.4e-18  Score=162.71  Aligned_cols=67  Identities=43%  Similarity=0.593  Sum_probs=62.6

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHH
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIA   69 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILe   69 (350)
                      -||+||+|++|||+..|.|||||||.||||||+|||||+|.+|-|+|.|++|.+|.|+ .+.++-||.
T Consensus        62 ~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFa-TpKLep~i~  128 (338)
T KOG0015|consen   62 TGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TPKLEPMIT  128 (338)
T ss_pred             cceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEec-ccccccccc
Confidence            3799999999999999999999999999999999999999999999999999999996 477777764

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.39  E-value=8.9e-13  Score=107.54  Aligned_cols=84  Identities=20%  Similarity=0.262  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhccccCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhccc
Q 018780          113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPD-KINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICI  191 (350)
Q Consensus       113 ~vE~L~~e~~kLk~qle~lq~rlr~~~ged-~~LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~Lq~keq~~~~~~~  191 (350)
                      ..+.+..++.+|+.+++.++..+|++.|++ +.||++||.+||++|+.+|.+||+||++++.++|..|++|+..+.+.|.
T Consensus        13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~   92 (100)
T PF01486_consen   13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN   92 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999 8899999999999999999999999999999999999999888877776


Q ss_pred             ccccC
Q 018780          192 PFRMG  196 (350)
Q Consensus       192 ~l~~~  196 (350)
                      .|+.+
T Consensus        93 ~L~~~   97 (100)
T PF01486_consen   93 QLRQK   97 (100)
T ss_pred             HHHHH
Confidence            66544

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.29  E-value=5.8e-13  Score=130.41  Aligned_cols=66  Identities=36%  Similarity=0.530  Sum_probs=61.7

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHH
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVI   68 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~IL   68 (350)
                      |||+||.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|+. +..+.|+
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t-p~~e~v~  146 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT-PKLESVV  146 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC-Ccccccc
Confidence            89999999999999999999999999999999999999999999999999999999975 5555554

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.38  E-value=7.1  Score=34.42  Aligned_cols=59  Identities=19%  Similarity=0.247  Sum_probs=50.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018780          111 SQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKE  169 (350)
Q Consensus       111 ~~~vE~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~  169 (350)
                      ..+.+++...+..|..+++.++.++..+.+.....|.+|...++.......+..|.||.
T Consensus       108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr  166 (169)
T PF07106_consen  108 EPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR  166 (169)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888899999999988888777655668999999999999999999999985

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		5e-04

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 4  RVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTG 53
          R K++IK +EN   R  T++KRKHGIMKKA E            + S TG
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETG 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-23
1hbx_A	92	SRF, serum response factor; gene regulation, trans	9e-23
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	5e-22
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	7e-22
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 92.5 bits (230), Expect = 1e-23
 Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPS-LCNGK 61
          GR K++I ++ +   RQ T+ KRK G+MKKA ELS+LCD +I L++F+ + K     +  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 RSIEEVIAKFAQLTPQERAKRKLESLEALKK 92
            +++V+ K+ +      ++   + +EAL K
Sbjct: 60 -DMDKVLLKYTEYNEPHESRTNSDIVEALNK 89

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 89.9 bits (223), Expect = 9e-23
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 2  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           GRVK+K++ ++N   R  T++KRK GIMKKA ELS L    ++LL+ S TG        
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY-TFAT 68

Query: 62 RSIEEVIAKFAQLTPQERA 80
          R ++ +I         +  
Sbjct: 69 RKLQPMITSETGKALIQTC 87

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 88.4 bits (219), Expect = 5e-22
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 2  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
            R K++IK +EN   R  T++KRKHGIMKKA ELS+L    ++LL+ S TG        
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVY-TFST 74

Query: 62 RSIEEVIAKFAQLTPQER 79
             E ++ +       + 
Sbjct: 75 PKFEPIVTQQEGRNLIQA 92

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 88.0 bits (218), Expect = 7e-22
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 2  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           GRVK+K++ ++N   R  T++KRK GIMKKA ELS L    ++LL+ S TG        
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY-TFAT 67

Query: 62 RSIEEVIAKFAQLTPQERA 80
          R ++ +I         +  
Sbjct: 68 RKLQPMITSETGKALIQTC 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 84.0 bits (208), Expect = 1e-20
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPS-LCNGK 61
          GR K++I ++ +   RQ T+ KRK G+MKKA ELS+LCD +I L++F+ + K     +  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 RSIEEVIAKFAQLTPQERA 80
            +++V+ K+ +      +
Sbjct: 60 -DMDKVLLKYTEYNEPHES 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 57/241 (23%)

Query: 87  LEALKKTFKKLDHDVN-VQEFLGT--SSQTIEDLTNQA-RLLQSQLSEMHRRLRYWTNPD 142
           L   +  F   + D   VQ+   +  S + I+ +      +  +       RL +WT   
Sbjct: 22  LSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT------LRL-FWTLLS 73

Query: 143 K-INSVEHLGQMENSLRDSLNHL--RMHKENLGKQELMSL--ECTTQFQNG--ICIPFRM 195
           K    V+    +E  LR +   L   +  E      +  +  E   +  N   +   + +
Sbjct: 74  KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 196 GSEEQLQTL-SWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISN 254
              +    L   +         L    N+L                 G  G GK+    +
Sbjct: 132 SRLQPYLKLRQALLE-------LRPAKNVLID---------------GVLGSGKTWVALD 169

Query: 255 SGQDSSLLSELSG------------TQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQ 302
                 +  ++               +++   L      I  N +  +D    + ++ I 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIH 228

Query: 303 E 303
            
Sbjct: 229 S 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 78/281 (27%)

Query: 75  TPQERAKR---KLESLEALKKTFKKLDHD--VNVQEFLGTSSQTIEDLTNQARLLQSQLS 129
             Q  AK    +L+    L++   +L     V +   LG+       +     L      
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQC 178

Query: 130 EMHRRLRYWTNPDKINSVEHLGQMENSLR-----------DSLNHLRMHKENLGKQELMS 178
           +M  ++ +W N    NS E + +M   L            D  +++++   ++ + EL  
Sbjct: 179 KMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRR 236

Query: 179 LECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSG--SSS 236
           L  +  ++N + +         L          N   V  ++    +  ++ C    ++ 
Sbjct: 237 LLKSKPYENCLLV---------L---------LN---V--QNAKAWNAFNLSCKILLTTR 273

Query: 237 FGSYSGYFGPGKSSEIS--------NSGQDSSLLSELSGT--QSLRLQLGGQCSYIPYNV 286
           F   + +     ++ IS           +  SLL +      Q L  ++    +  P  +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---LTTNPRRL 330

Query: 287 SLL------------------NDKFQPVSEMNIQE-NPVDY 308
           S++                   DK   + E ++    P +Y
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 41/275 (14%), Positives = 77/275 (28%), Gaps = 90/275 (32%)

Query: 6   KLKIKKLENTNGRQATYAKRKHGIMKKA-NELSIL-CDIDIILLMFSPTGKPSL--CNGK 61
            +   KL      +++    +    +K  + LS+      I      PT   SL   +  
Sbjct: 349 HVNCDKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHI------PTILLSLIWFDVI 400

Query: 62  RSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA 121
           +S   V+              KL     ++K  K+             S+ +I  +  + 
Sbjct: 401 KSDVMVVVN------------KLHKYSLVEKQPKE-------------STISIPSIYLEL 435

Query: 122 RLLQSQLSEMHRRL--RYWTNPDKINSVEHLGQMENSLRDS--LNHLRMHKENLGKQELM 177
           ++       +HR +   Y  N  K    + L        D    +H+  H +N+   E M
Sbjct: 436 KVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYL---DQYFYSHIGHHLKNIEHPERM 490

Query: 178 SLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSS- 236
           +L             FRM          ++                + H     + S S 
Sbjct: 491 TL-------------FRM----VFLDFRFLEQK-------------IRHDSTAWNASGSI 520

Query: 237 ------FGSYSGYFGPGKSSEISNSGQDSSLLSEL 265
                    Y  Y          N  +   L++ +
Sbjct: 521 LNTLQQLKFYKPYI-------CDNDPKYERLVNAI 548

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.97
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.97
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.96

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.7e-36  Score=238.38  Aligned_cols=88  Identities=34%  Similarity=0.635  Sum_probs=79.1

Q ss_pred             CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcChHHHHHh
Q 018780            3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKR   82 (350)
Q Consensus         3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~~er~k~   82 (350)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|++ ++|++||+||+++++..+.+.
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~~~~   79 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHESRT   79 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCCEEC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccccCC
Confidence            8999999999999999999999999999999999999999999999999999999986 789999999999987655554


Q ss_pred             hHHHHHHHH
Q 018780           83 KLESLEALK   91 (350)
Q Consensus        83 ~~~~~e~L~   91 (350)
                      ..+..++|+
T Consensus        80 ~~d~~e~~~   88 (90)
T 3p57_A           80 NSDIVEALN   88 (90)
T ss_dssp             HHHHHHHHH
T ss_pred             hHhHHHHHh
Confidence            555444443

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2e-35  Score=227.79  Aligned_cols=73  Identities=37%  Similarity=0.690  Sum_probs=69.3

Q ss_pred             CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcCh
Q 018780            3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTP   76 (350)
Q Consensus         3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~   76 (350)
                      ||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|++ ++|++||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999975 789999999999864

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.97  E-value=1.9e-33  Score=225.71  Aligned_cols=73  Identities=38%  Similarity=0.527  Sum_probs=69.6

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcC
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLT   75 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s   75 (350)
                      |||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+||....
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~G~~   88 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGRN   88 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhhCCc
Confidence            99999999999999999999999999999999999999999999999999999999975 68999999987643

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.97  E-value=4.3e-33  Score=220.91  Aligned_cols=71  Identities=39%  Similarity=0.539  Sum_probs=67.7

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhh
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQ   73 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~   73 (350)
                      |||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999975 889999986643

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.96  E-value=1.3e-32  Score=222.19  Aligned_cols=70  Identities=40%  Similarity=0.552  Sum_probs=66.9

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHh
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFA   72 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~   72 (350)
                      |||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999975 78999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	9e-22
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	2e-20
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-20

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (212), Expect = 9e-22
 Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 62
          GR K++I ++ +   RQ T+ KRK G+MKKA ELS+LCD +I L++F+ + K        
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59

Query: 63 SIEEVIAKFAQ 73
           +++V+ K+ +
Sbjct: 60 DMDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 2  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 61
           GRVK+K++ ++N   R  T++KRK GIMKKA ELS L    ++LL+ S TG        
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY-TFAT 60

Query: 62 RSIEEVIAKF 71
          R ++ +I   
Sbjct: 61 RKLQPMITSE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 62
           R K++IK +EN   R  T++KRKHGIMKKA ELS+L    ++LL+ S TG         
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF-STP 61

Query: 63 SIEEVIAKF 71
            E ++ + 
Sbjct: 62 KFEPIVTQQ 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.97
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.96
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.96

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.1e-35  Score=218.94  Aligned_cols=71  Identities=38%  Similarity=0.710  Sum_probs=68.6

Q ss_pred             CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhc
Q 018780            3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQL   74 (350)
Q Consensus         3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~   74 (350)
                      ||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+||+|+|++ +++++||+||.++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s-~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHhcC
Confidence            8999999999999999999999999999999999999999999999999999999986 7899999999863

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.1e-33  Score=213.67  Aligned_cols=72  Identities=39%  Similarity=0.528  Sum_probs=69.1

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhc
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQL   74 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~   74 (350)
                      +||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+||+|+|+ +++++.||+||...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~-s~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEE-CGGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEee-CCCHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999996 58999999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.4e-33  Score=214.50  Aligned_cols=76  Identities=37%  Similarity=0.500  Sum_probs=71.2

Q ss_pred             CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcChHH
Q 018780            2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQE   78 (350)
Q Consensus         2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~~e   78 (350)
                      -||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+||+|+|+ +|+|+.||+||...+..+
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~-sp~v~~vl~r~~~~~~~~   77 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TPKFEPIVTQQEGRNLIQ   77 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEE-CTTTTHHHHSHHHHHHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEecc-CCCHHHHHHHHhcccHHH
Confidence            4899999999999999999999999999999999999999999999999999999996 488999999999765443