Citrus Sinensis ID: 018800

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
MANTNEITHGFSILASNNLTKHTLVSPSKQTISFNSDVDTTHYDEDESSSTVSDCESSVSGPVVHPPTPFSNGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVHIA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHccccccccccccccccccEEEccccccccccccccccccccEEEEEEEEEEcccEEEccccccccccccccccEEcccccccEEEEEEccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccc
cccccccccccEEEEccccEEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHcccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEccccEccccccccccccccccccccccccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MANTNEITHGFsilasnnltkhtlvspskqtisfnsdvdtthydedessstvsdcessvsgpvvhpptpfsnglislqegdkvYDLISGRLISGLGVLGAQAKIVSIHrnsfsgvmgQAKIQSFQIFAKAVAQKcggdanvkyawYAGTKDEICKIIEhgfgycgkpsnngmygcgvylspddsplecvknsaidrEGMRYLLLCRVILGkqevvhpgsdqyhpstgefesgvdnlqvpkkYILWSTNMNTHILPEYIIslkapssmkgfgrvqdslrvptspwmpfpILISALskflppptvaLMSKYYrdhkgkkvsRHELIQRVRQIAGDQLLIAVIKSYRAKVHIA
MANTNEITHGFSILASNNLTKHTLVSPSKQTISFNSDVDTTHYDEDESSSTVSDCESSVSGPVVHPPTPFSNGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVHIA
MANTNEITHGFSILASNNLTKHTLVSPSKQTISFNSDVDTTHYdedessstvsdcessvsGPVVHPPTPFSNGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVHIA
**********FSILA********************************************************NGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHP*************SGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV***
***TNEI*HGFSILASNNLTKH*LV******************************************TPFSNGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIF************NVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGK*****************FESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSM******************PFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV***
MANTNEITHGFSILASNNLTKHTLVSPSKQTISFNSDVD**********************PVVHPPTPFSNGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVHIA
**NTNEITHGFSILASNNLTKHTLVSPSKQTISFNSD********************************FSNGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSD*Y**STGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSS*************PTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVHIA
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MANTNEITHGFSILASNNLTKHTLVSPSKQTISFNSDVDTTHYDEDESSSTVSDCESSVSGPVVHPPTPFSNGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVHIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query350 2.2.26 [Sep-21-2011]
Q9FJJ3309 Probable inactive poly [A yes no 0.754 0.854 0.507 9e-72
Q9ZUD9323 Probable inactive poly [A no no 0.762 0.826 0.442 2e-63
Q9STU1316 Probable inactive poly [A no no 0.825 0.914 0.407 4e-59
O64592305 Probable inactive poly [A no no 0.822 0.944 0.349 7e-49
Q8RY59589 Inactive poly [ADP-ribose no no 0.842 0.500 0.292 1e-37
O82289568 Probable inactive poly [A no no 0.728 0.448 0.304 4e-30
Q460N3656 Poly [ADP-ribose] polymer no no 0.397 0.211 0.251 3e-05
Q2EMV91817 Poly [ADP-ribose] polymer yes no 0.5 0.096 0.229 6e-05
>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana GN=SRO5 PE=1 SV=1 Back     alignment and function desciption
 Score =  270 bits (691), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 142/280 (50%), Positives = 197/280 (70%), Gaps = 16/280 (5%)

Query: 73  GLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVA 132
           GL+ L EGDK +DLI     SGLG    Q +I+S+ RN F  V  +AK+++FQ+F +AV 
Sbjct: 41  GLMELLEGDKAHDLIYRNCKSGLG---DQCQILSVLRNGFRNVGSRAKLKTFQVFQEAVQ 97

Query: 133 QKCGGD--ANVKYAWYAGTKDEICKIIEHGFGYCGKP-SNNGMYGCGVYLSPDDSPLECV 189
            K GGD  A VKY W + +K E+  I E+GF    +P  N+G +G G+YLSPD+SPL+C+
Sbjct: 98  MKHGGDGGAKVKYGWCSVSKHELKTIFEYGFS---EPLRNDGSFGRGLYLSPDNSPLDCL 154

Query: 190 KNSAIDRE-GMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTN 248
           K+SA + E GMR+LLLCRV+LGK E+V  GS +  PS+ EF+SGVD+L   KKYI+WST+
Sbjct: 155 KDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWSTH 214

Query: 249 MNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSK 308
           MNTH+LPE+++ +KAP ++    R    LR   SPWM FP+LI ALSKFLPP  + ++ K
Sbjct: 215 MNTHVLPEFLVCIKAPFNLT---RSPKRLR---SPWMAFPVLIKALSKFLPPSQILVIQK 268

Query: 309 YYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVH 348
           +Y+D + ++++R ELIQRVR I GD+LL+ +IK+   KV 
Sbjct: 269 HYKDQQNRRITRSELIQRVRSITGDKLLVHIIKACGHKVQ 308
Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1 Back     alignment and function description
>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis thaliana GN=SRO4 PE=2 SV=2 Back     alignment and function description
>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis thaliana GN=SRO3 PE=1 SV=2 Back     alignment and function description
>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1 Back     alignment and function description
>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana GN=SRO1 PE=1 SV=2 Back     alignment and function description
>sp|Q460N3|PAR15_HUMAN Poly [ADP-ribose] polymerase 15 OS=Homo sapiens GN=PARP15 PE=1 SV=1 Back     alignment and function description
>sp|Q2EMV9|PAR14_MOUSE Poly [ADP-ribose] polymerase 14 OS=Mus musculus GN=Parp14 PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
TAIR|locus:2154084309 SRO5 "similar to RCD one 5" [A 0.751 0.851 0.508 4e-67
TAIR|locus:2028879323 SRO2 "similar to RCD one 2" [A 0.797 0.863 0.439 3.5e-59
TAIR|locus:2100357316 SRO4 "similar to RCD one 4" [A 0.74 0.819 0.426 4.4e-52
TAIR|locus:2016159305 SRO3 "similar to RCD one 3" [A 0.788 0.904 0.360 1.9e-44
TAIR|locus:2031700589 RCD1 "RADICAL-INDUCED CELL DEA 0.497 0.295 0.325 4.8e-37
TAIR|locus:2062471568 SRO1 "similar to RCD one 1" [A 0.505 0.311 0.345 2.3e-35
UNIPROTKB|F1PEU2686 PARP15 "Uncharacterized protei 0.391 0.199 0.288 2.9e-05
UNIPROTKB|F1SQ35574 PARP15 "Uncharacterized protei 0.405 0.247 0.259 0.00014
UNIPROTKB|E1BQC51636 PARP14 "Uncharacterized protei 0.505 0.108 0.229 0.00039
UNIPROTKB|B7ZL48375 PARP15 "Poly [ADP-ribose] poly 0.397 0.370 0.251 0.00056
TAIR|locus:2154084 SRO5 "similar to RCD one 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 142/279 (50%), Positives = 197/279 (70%)

Query:    73 GLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVA 132
             GL+ L EGDK +DLI     SGLG    Q +I+S+ RN F  V  +AK+++FQ+F +AV 
Sbjct:    41 GLMELLEGDKAHDLIYRNCKSGLG---DQCQILSVLRNGFRNVGSRAKLKTFQVFQEAVQ 97

Query:   133 QKCGGD--ANVKYAWYAGTKDEICKIIEHGFGYCGKP-SNNGMYGCGVYLSPDDSPLECV 189
              K GGD  A VKY W + +K E+  I E+GF    +P  N+G +G G+YLSPD+SPL+C+
Sbjct:    98 MKHGGDGGAKVKYGWCSVSKHELKTIFEYGFS---EPLRNDGSFGRGLYLSPDNSPLDCL 154

Query:   190 KNSAIDRE-GMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTN 248
             K+SA + E GMR+LLLCRV+LGK E+V  GS +  PS+ EF+SGVD+L   KKYI+WST+
Sbjct:   155 KDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWSTH 214

Query:   249 MNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSK 308
             MNTH+LPE+++ +KAP ++    R    LR   SPWM FP+LI ALSKFLPP  + ++ K
Sbjct:   215 MNTHVLPEFLVCIKAPFNLT---RSPKRLR---SPWMAFPVLIKALSKFLPPSQILVIQK 268

Query:   309 YYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV 347
             +Y+D + ++++R ELIQRVR I GD+LL+ +IK+   KV
Sbjct:   269 HYKDQQNRRITRSELIQRVRSITGDKLLVHIIKACGHKV 307
GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005739 "mitochondrion" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0072593 "reactive oxygen species metabolic process" evidence=IMP
GO:0010200 "response to chitin" evidence=RCA
TAIR|locus:2028879 SRO2 "similar to RCD one 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100357 SRO4 "similar to RCD one 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016159 SRO3 "similar to RCD one 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031700 RCD1 "RADICAL-INDUCED CELL DEATH1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062471 SRO1 "similar to RCD one 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEU2 PARP15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQ35 PARP15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQC5 PARP14 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZL48 PARP15 "Poly [ADP-ribose] polymerase 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FJJ3SRO5_ARATHNo assigned EC number0.50710.75420.8543yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.2LOW CONFIDENCE prediction!
3rd Layer2.4.2.30LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
pfam1217470 pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain 3e-21
>gnl|CDD|204843 pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain Back     alignment and domain information 
 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query: 278 RVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLI 337
           R P+SPWMPFP+L S LSK LP   + L+  +Y   +  K+SR E ++++R I GD+LL 
Sbjct: 2   RRPSSPWMPFPMLFSILSKHLPSDIMLLLQHHYEKLRRNKISREEFVRKLRIIVGDKLLK 61

Query: 338 AVIKSYRAK 346
           + I   + K
Sbjct: 62  STISKLQQK 70

This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homologue, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID. Length = 70

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 350
cd01438223 tankyrase_like Tankyrases interact with the telome 100.0
PF00644206 PARP: Poly(ADP-ribose) polymerase catalytic domain 100.0
cd01439121 TCCD_inducible_PARP_like Poly(ADP-ribose) polymera 100.0
PF1217470 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: I 99.96
cd01437347 parp_like Poly(ADP-ribose) polymerase (parp) catal 99.96
PLN03124643 poly [ADP-ribose] polymerase; Provisional 99.89
PLN03123981 poly [ADP-ribose] polymerase; Provisional 99.88
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 99.86
cd01341137 ADP_ribosyl ADP_ribosylating enzymes catalyze the 99.76
KOG1037531 consensus NAD+ ADP-ribosyltransferase Parp, requir 98.57
KOG0034187 consensus Ca2+/calmodulin-dependent protein phosph 89.93
PF12767 252 SAGA-Tad1: Transcriptional regulator of RNA polII, 88.56
PF12509165 DUF3715: Protein of unknown function (DUF3715); In 85.46
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information 
Probab=100.00  E-value=5.5e-38  Score=288.88  Aligned_cols=180  Identities=20%  Similarity=0.311  Sum_probs=147.6

Q ss_pred             CCceEEcCCCChHHHHHHHHHhcccCCC---------CCCCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCce
Q 018800           71 SNGLISLQEGDKVYDLISGRLISGLGVL---------GAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANV  141 (350)
Q Consensus        71 ~~~lv~L~~~s~Ey~~V~~~F~~~~~~~---------~~~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~  141 (350)
                      ...+++|.+++.||+.|++.|.+|.+++         .+.++|++|+||     ||+.||++|+.++++|..+++...||
T Consensus        15 ~~~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RI-----QN~~Lw~~y~~kk~~~~~~~~~~~ne   89 (223)
T cd01438          15 GTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKV-----VNKKLRERYCHRQKEIAEENHNHHNE   89 (223)
T ss_pred             cceEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEec-----CCHHHHHHHHHHHHHHHHhhCCCcce
Confidence            3569999999999999999999998753         235799999999     89999999999999999988888999


Q ss_pred             eEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCCCCCcCCcccccC---------CCC-----cEEEEEEEe
Q 018800          142 KYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAID---------REG-----MRYLLLCRV  207 (350)
Q Consensus       142 r~LfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d---------~~G-----~r~mlLCrV  207 (350)
                      ++|||||+.  +..|+.+|||++.+. .++|||+|||||.+++  +|++||...         .++     .+.||||||
T Consensus        90 ~~LfHGt~~--~~~I~~~GFd~r~~~-~g~~fGkGiYFA~~as--kS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrV  164 (223)
T cd01438          90 RMLFHGSPF--INAIIHKGFDERHAY-IGGMFGAGIYFAENSS--KSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRV  164 (223)
T ss_pred             EEEeecCcc--hhHHHHhCCCccccc-cCceeeeeeeeccchh--hhccccccccccccCcccccccccccceeEEEEEE
Confidence            999999974  669999999988753 6899999999999995  457886531         111     478999999


Q ss_pred             ecCCceeeCCCCCCCCCCCCCCcceecCCC----CCcEEEEEcCCCccccccccEEEEEcC
Q 018800          208 ILGKQEVVHPGSDQYHPSTGEFESGVDNLQ----VPKKYILWSTNMNTHILPEYIISLKAP  264 (350)
Q Consensus       208 llG~~e~v~p~s~~~~ps~~~yDSvVd~~~----~p~~yVVy~~~mN~qiyPeYlItyk~~  264 (350)
                      ++|++....+.... .+.+.+|||+++...    ..+|||||+.   +||||+|||+|+..
T Consensus       165 lLGk~~~~~~~~~~-~~~P~G~dSv~g~Ps~~~~~~~EfVVyd~---~Q~YPeYLI~y~~~  221 (223)
T cd01438         165 TLGKSFLQFSAMKM-AHAPPGHHSVIGRPSVNGLAYAEYVIYRG---EQAYPEYLITYQIV  221 (223)
T ss_pred             EecceeeccCCccc-CCCCCCCcceEcCCCCCCcccCEEEEECC---CcEeeEEEEEEEee
Confidence            99998654433322 233568999998532    2479999997   99999999999863

Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself Back     alignment and domain information
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors Back     alignment and domain information
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>PLN03124 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms] Back     alignment and domain information
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ] Back     alignment and domain information
>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
4f0e_A200 Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATAL 4e-07
3blj_A221 Crystal Structure Of Human Poly(adp-ribose) Polymer 6e-07
>pdb|4F0E|A Chain A, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC DOMAIN IN Complex With Sto1102 Length = 200 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 17/195 (8%)
Query: 74  LISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQ 133
           ++ L+ G   Y+ I  +          + KI  I +N+F         QS+Q+  + +  
Sbjct: 18  MVQLEPGQSEYNTIKDKFTRTCSSYAIE-KIERI-QNAFLW-------QSYQVKKRQMDI 68
Query: 134 KCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSA 193
           K     N +  ++    D +  + +HGF       N   YG G Y + D S       S 
Sbjct: 69  KNDHKNNERLLFHGTDADSVPYVNQHGFNRSCAGKNAVSYGKGTYFAVDASYSAKDTYSK 128
Query: 194 IDREGMRYLLLCRVIL-----GKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTN 248
            D  G +++ + RV+      G+  +V P     H  T  F+S  +N + PK ++++  N
Sbjct: 129 PDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKNPHNPTDLFDSVTNNTRSPKLFVVFFDN 188
Query: 249 MNTHILPEYIISLKA 263
                 PEY+I+  A
Sbjct: 189 ---QAYPEYLITFTA 200
>pdb|3BLJ|A Chain A, Crystal Structure Of Human Poly(adp-ribose) Polymerase 15, Catalytic Fragment Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 4e-31
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 1e-30
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 5e-29
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 1e-21
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 4e-18
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 3e-12
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 2e-09
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 3e-08
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 5e-05
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 6e-05
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217 Back     alignment and structure
 Score =  116 bits (291), Expect = 4e-31
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 13/198 (6%)

Query: 72  NGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAV 131
           N L  L E    +  +       L    +  ++V + R     V      Q ++++ + +
Sbjct: 11  NNLERLAENTGEFQEVVRAFYDTLDAARSSIRVVRVER-----VSHPLLQQQYELYRERL 65

Query: 132 AQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKN 191
            Q+C      +  ++  T   +  I  HGF       N  +YG GVY +   S     + 
Sbjct: 66  LQRCERRPVEQVLYHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRY 125

Query: 192 SAIDREGMRYLLLCRVILGKQEVVH-----PGSDQYHPSTGEFESGVDNLQVPKKYILWS 246
           S  + +G + + + RV+ G           P           ++S +D +  P  ++++ 
Sbjct: 126 SPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSAMDCICQPSIFVIFH 185

Query: 247 TNMNTHILPEYIISLKAP 264
              +T  LP ++I+ +  
Sbjct: 186 ---DTQALPTHLITCEHV 200
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193 Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221 Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198 Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173 Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240 Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350 Back     alignment and structure
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506 Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Length = 277 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 100.0
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 100.0
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 100.0
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 100.0
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 100.0
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 100.0
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 100.0
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 99.97
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 99.97
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 99.97
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 99.31
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.9e-49  Score=361.84  Aligned_cols=187  Identities=19%  Similarity=0.297  Sum_probs=170.3

Q ss_pred             CceEEcCCCChHHHHHHHHHhcccCCCCCCCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccChh
Q 018800           72 NGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKD  151 (350)
Q Consensus        72 ~~lv~L~~~s~Ey~~V~~~F~~~~~~~~~~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~LfHGTs~~  151 (350)
                      ..|++|++++.||+.|+++|.+||++.+...+|++|+||     +|+.+|++|+.++++|++++++.+||++|||||+.+
T Consensus        11 ~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~~~~I~~I~RI-----qn~~l~~~f~~~k~~m~~k~~~~~ne~~LfHGt~~~   85 (217)
T 3hkv_A           11 NNLERLAENTGEFQEVVRAFYDTLDAARSSIRVVRVERV-----SHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAP   85 (217)
T ss_dssp             CCEEECCSSSHHHHHHHHHHHHTTGGGGGTEEEEEEEEE-----CCHHHHHHHHHHHHHHHHHCCSSCSEEEEEEEECGG
T ss_pred             ccceECCCCChHHHHHHHHHHhhcCCcCCCceEEEEEEE-----CChhHHHHHHHHHHHHHHhcCCCCceEEEEeCCCHH
Confidence            679999999999999999999999875566899999999     899999999999999999988889999999999999


Q ss_pred             hHHHHHhhcCCCCCCCCCCCcccceeeeCCCCCCCcCCcccccCCCCcEEEEEEEeecCCce-----eeCCCCCCCCCCC
Q 018800          152 EICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQE-----VVHPGSDQYHPST  226 (350)
Q Consensus       152 ~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d~~G~r~mlLCrVllG~~e-----~v~p~s~~~~ps~  226 (350)
                      +++.||++||+++.++.++++||+|||||+++++|.++.||.++++|.++||||||++|++.     ++.||+++..++.
T Consensus        86 ~~~~I~~~GF~~~~~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~~~g~~~m~lcrVl~G~~~~g~~~~~~PP~~~~~~~~  165 (217)
T 3hkv_A           86 AVPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVL  165 (217)
T ss_dssp             GHHHHHHHCSCTTTSCCCCCTTCSSEEEESSHHHHTSTTTSCCCTTSEEEEEEEEEECCSEEECCTTCSSSCBCCTTCSS
T ss_pred             HHHHHHhcCCcccccCcchhccccceeccCCcccccccccccccCCCceEEEEEEEEccccccCCCccCCCCCCccCCCC
Confidence            99999999999999988999999999999998666556799999999999999999999986     3566766655667


Q ss_pred             CCCcceecCCCCCcEEEEEcCCCccccccccEEEEEcCCC
Q 018800          227 GEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSS  266 (350)
Q Consensus       227 ~~yDSvVd~~~~p~~yVVy~~~mN~qiyPeYlItyk~~~~  266 (350)
                      ++|||+||++.+|++||||++   +||||+|||+|+.++.
T Consensus       166 ~~yDSvvd~~~np~~~VVf~~---~qiyPeYLI~y~~~~~  202 (217)
T 3hkv_A          166 LRYDSAMDCICQPSIFVIFHD---TQALPTHLITCEHVPR  202 (217)
T ss_dssp             SBCSEEESCSSSCCEEEECCT---TSEEEEEEEEEEECC-
T ss_pred             CceeEEECCCCCCCEEEEEcC---CcCceeEEEEEecCCC
Confidence            899999999999999999996   9999999999998754
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A* Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ... Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Back     alignment and structure
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Back     alignment and structure
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 350
d1efya2215 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase 3e-14
d1gs0a2217 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, 1e-08
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.6 bits (167), Expect = 3e-14
 Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 33/205 (16%)

Query: 74  LISLQEGDKVYDLISGRLISGLGVL--GAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAV 131
           +  + +  +   +I   + +           K+V I R     +  + + Q ++ F +  
Sbjct: 5   IKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFR-----IEREGESQRYKPFKQ-- 57

Query: 132 AQKCGGDANVKYAWYAGTKDEICKIIEHGFG--YCGKPSNNGMYGCGVYLSPDDSPLECV 189
                   N +  W+         I+  G        P    M+G G+Y + D       
Sbjct: 58  ------LHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFA-DMVSKSAN 110

Query: 190 KNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGE--------------FESGVDN 235
                  + +  +LL  V LG    +   S       G+                + +D 
Sbjct: 111 YCHTSQADPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDG 170

Query: 236 LQVPKKYILWSTNMNTHIL-PEYII 259
           ++VP    + +   +T +L  EYI+
Sbjct: 171 VEVPLGNGISTGINDTCLLYNEYIV 195
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
d1efya2215 Poly(ADP-ribose) polymerase, C-terminal domain {Ch 100.0
d1gs0a2217 Poly(ADP-ribose) polymerase, C-terminal domain {Mo 99.97
d1qjta_99 Eps15 {Mouse (Mus musculus) [TaxId: 10090]} 80.85
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.4e-35  Score=266.98  Aligned_cols=174  Identities=16%  Similarity=0.259  Sum_probs=141.7

Q ss_pred             CceEEcCCCChHHHHHHHHHhcccCCCCC--CCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccC
Q 018800           72 NGLISLQEGDKVYDLISGRLISGLGVLGA--QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGT  149 (350)
Q Consensus        72 ~~lv~L~~~s~Ey~~V~~~F~~~~~~~~~--~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~LfHGTs  149 (350)
                      ..|..|+++++||+.|+++|.+|+++.+.  ..+|.+|+||     +++.+|++|+..+        ...|+++|||||+
T Consensus         3 ~~i~~l~~~S~eyk~I~~~f~~t~~~~~~~~~~~I~~I~rI-----~~~~~~~~f~~~~--------~~~n~~~LfHGt~   69 (215)
T d1efya2           3 TDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRI-----EREGESQRYKPFK--------QLHNRQLLWHGSR   69 (215)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEE-----EETTHHHHHGGGG--------GSSCEEEEEEEEC
T ss_pred             CeEEECCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEE-----cCcchHHHHHHhh--------ccCcEEEEEecCC
Confidence            46889999999999999999999875332  4689999999     7999999997432        2479999999999


Q ss_pred             hhhHHHHHhhcCCCCCC--CCCCCcccceeeeCCCCCCCcCCcccccC-CCCcEEEEEEEeecCCceeeCCCCCCCCCCC
Q 018800          150 KDEICKIIEHGFGYCGK--PSNNGMYGCGVYLSPDDSPLECVKNSAID-REGMRYLLLCRVILGKQEVVHPGSDQYHPST  226 (350)
Q Consensus       150 ~~~i~~Il~~GF~~~~~--~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d-~~G~r~mlLCrVllG~~e~v~p~s~~~~ps~  226 (350)
                      .+++..|+++||+++..  ..++++||+|||||..+  ++|+.||.++ .+|.++||||||++|++....++... .+++
T Consensus        70 ~~~~~~Il~~Gf~~~~~~~~~~g~~~G~GiYfa~~~--s~S~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~~-~~~p  146 (215)
T d1efya2          70 TTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMV--SKSANYCHTSQADPIGLILLGEVALGNMYELKNASHI-TKLP  146 (215)
T ss_dssp             GGGHHHHHHHCSCCCCTTSCGGGSTTSSSEEEBSSH--HHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCCC-CSCC
T ss_pred             HHHHHHHHHcCCCCCcccccccCcceeeeEEecCcc--chhhccccCCccCCeeEEEEEEEEecceEEecCcccc-ccCC
Confidence            99999999999997654  34689999999999887  5668999876 47999999999999999776554333 3446


Q ss_pred             CCCcceec---------------CCC----------------CCcEEEEEcCCCccccccccEEEEEcC
Q 018800          227 GEFESGVD---------------NLQ----------------VPKKYILWSTNMNTHILPEYIISLKAP  264 (350)
Q Consensus       227 ~~yDSvVd---------------~~~----------------~p~~yVVy~~~mN~qiyPeYlItyk~~  264 (350)
                      .++||+.+               ++.                ...|||||++   .|+||+|||+|+..
T Consensus       147 ~g~~s~~~~g~~~pd~~~~~~~d~v~vP~g~~~~~~~~~~~~~~~EyVVy~~---~Q~~p~YLI~~k~~  212 (215)
T d1efya2         147 KGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDV---AQVNLKYLLKLKFN  212 (215)
T ss_dssp             TTCCEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESCG---GGEEEEEEEEEEEE
T ss_pred             CCccccccccccCCChhhccccCCeeccCCCccccCCcCCccccCEEEEEec---hhEeEEEEEEEEEE
Confidence            68887653               111                1268999998   99999999999864
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure