Citrus Sinensis ID: 018806

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGR
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccEEEEcccccccccccccccccEEEccccccccccccccccccccEEccccccccHHHHcccccccccccccccccccccccccEEEEEEccccccEEEEEccccEEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEcccccccccEEcccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEcccccccccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccccEEHHHcccHHHHHHHcHccccEEccccccccccEccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccEEEEEcccccccEEEEEcccccEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccccccccccccccHcEcccc
Coil and Loop (DISEMBL)
mpsfprpgsvtvceinrdlitadnlsddrakdtyGKVLGMvfapvpfqsdelassspdrqeseqrgreegeGLFSTLHGIishsikpllhpdhvhllpevdlqgvswHQHKHIVAFISGSTQVIVRDyedsegkdaciltsdsqrdvkvlewrpnggrslsvgckggiciwapsypgnaasVRSGAASFLGalsrgpgtrwTLVDFLRSqngeqitalswgpdgrylasasyesssFTIWDVAQGlgtpirrgfgglsilkwsptgdyffaakfdgtfylwetntwtsepwsstsgfvtgatwdpEGRMILLAFAGsltlgsihfaskppsldahllpvdlpdivsltgr
Flexible Loop (DISEMBL)
mpsfprpgsvtVCEINRdlitadnlsddrAKDTYGKVLGMVFAPVpfqsdelassspdrqesEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKdaciltsdsqrdvkvlewrpnggrslsvgCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASkppsldahllpvdlpdivsltgr
Low Complexity Region (SEG)
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDrqeseqrgreegegLFSTLHGIISHSIKpllhpdhvhllpEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGR
Disordered region (IsUnstruct)
*********VTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVP**************************LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI******
Disordered Region (DISOPRED)
*****RP***TVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPV*************************EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG*
Disordered Region (DISEMBL)
********SVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSD*******************GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGR
Disordered Region (DISPRO)
***F*RPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELA*******************LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
P58742	546	Aladin OS=Mus musculus GN	yes	no	0.582	0.373	0.285	2e-18
Q9NRG9	546	Aladin OS=Homo sapiens GN	yes	no	0.582	0.373	0.285	1e-17
Q86HX1	1114	Protein HIRA OS=Dictyoste	no	no	0.46	0.144	0.241	2e-07
Q652L2	975	Protein HIRA OS=Oryza sat	no	no	0.308	0.110	0.313	1e-06
O42611	1025	Protein HIRA OS=Takifugu	N/A	no	0.457	0.156	0.262	4e-06
Q8QFR2	1013	Protein HIRA OS=Xenopus l	N/A	no	0.457	0.157	0.268	8e-06
P79987	1019	Protein HIRA OS=Gallus ga	no	no	0.451	0.155	0.276	3e-05
O15736	612	Protein tipD OS=Dictyoste	no	no	0.205	0.117	0.350	3e-05
Q9LXN4	1024	Protein HIRA OS=Arabidops	no	no	0.302	0.103	0.3	3e-05
Q32SG6	964	Protein HIRA OS=Zea mays	N/A	no	0.502	0.182	0.246	6e-05

>sp|P58742|AAAS_MOUSE Aladin OS=Mus musculus GN=Aaas PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 95/231 (41%), Gaps = 27/231 (11%)

Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS 159
           L+  +WH H  K  VA +  S +V      ++       L    QR+V  L W+P     
Sbjct: 154 LRVFAWHPHTNKFAVALLDDSIRVY-----NANSTIVPSLKHRLQRNVAALAWKPLSASV 208

Query: 160 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219
           L+V C+  I IW       +    SG A  L      P                 +T+L+
Sbjct: 209 LAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLA 251

Query: 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGT 277
           W P+G +L SAS   +   +WDV+     P+   RG GG++ L WSP G    A      
Sbjct: 252 WAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAV 310

Query: 278 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328
           F +WE   WT E W + SG      W P+G  +L    G   + S+ F  +
Sbjct: 311 FRVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPER 361

Plays a role in the normal development of the peripheral and central nervous system.
Mus musculus (taxid: 10090)

>sp|Q9NRG9|AAAS_HUMAN Aladin OS=Homo sapiens GN=AAAS PE=1 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 94/231 (40%), Gaps = 27/231 (11%)

Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS 159
           L+  +WH H  K  VA +  S +V      ++       L    QR+V  L W+P     
Sbjct: 154 LRVFAWHPHTNKFAVALLDDSVRVY-----NASSTIVPSLKHRLQRNVASLAWKPLSASV 208

Query: 160 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219
           L+V C+  I IW       +    SG A  L      P                 +T+L+
Sbjct: 209 LAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLA 251

Query: 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGT 277
           W P G  L SAS   ++  +WDV+     P+   RG GG++ L WSP G    A      
Sbjct: 252 WAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKILATTPSAV 310

Query: 278 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328
           F +WE   WT E W + SG      W P+G  +L    G   + S+ F  +
Sbjct: 311 FRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPER 361

Plays a role in the normal development of the peripheral and central nervous system.

Homo sapiens (taxid: 9606)

>sp|Q86HX1|HIRA_DICDI Protein HIRA OS=Dictyostelium discoideum GN=hira PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 25/186 (13%)

Query: 134 KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGNAASVRSGAASFLGA 192
           K  C + +     V  ++W  +G + L+ G    +C IW  S                 +
Sbjct: 58  KLLCSIENAHFHSVNSVKWSKDG-KYLASGSDDKLCMIWGLSNNN--------------S 102

Query: 193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTPIR 251
           L +     W  V  LR      I+ +SW PD +Y+A+ S++  S  IW+  +  + + + 
Sbjct: 103 LLKNTTENWVCVATLRGH-ASDISEVSWSPDNKYIATCSFD-KSIIIWETNKFQMVSKLE 160

Query: 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWS-STSGFVTGATWDP 305
              G +  L W P G Y  +   D +  +W T+ W      +EP+  S + F    +W P
Sbjct: 161 EHKGFVKGLTWDPLGRYLASQSEDKSLIIWRTSDWVVETIVTEPFKHSGNSFFLRPSWTP 220

Query: 306 EGRMIL 311
           +G+ I+
Sbjct: 221 DGQFIV 226

Required for the periodic repression of histone gene transcription during the cell cycle. Promotes replication-independent chromatin assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q652L2|HIRA_ORYSJ Protein HIRA OS=Oryza sativa subsp. japonica GN=Os09g0567700 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI- 259
           W +V  LR    + +  L+W PD   LAS S +++   IW +A G+ T + RG   L   
Sbjct: 115 WKVVMTLRGHTAD-VVDLNWSPDDSTLASGSLDNT-VHIWSMANGICTAVLRGHSSLVKG 172

Query: 260 LKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWSSTSG--FVTGATWDPEGRMI 310
           + W P G +  +   D T  +W T+ W     T   WS + G  F     W P G  I
Sbjct: 173 VTWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTEGHWSKSLGSTFFRRLAWSPCGHFI 230

Histone chaperone involved in maintining knox genes silencing throughout leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O42611|HIRA_TAKRU Protein HIRA OS=Takifugu rubripes GN=hira PE=2 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 19/179 (10%)

Query: 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT-RWTLVD 205
           V  + W  NG    S G    + +W       AA +  G ++  G+ ++     +W  V 
Sbjct: 73  VNCVRWSNNGLYLASGGDDKLVMVWK-----RAALI--GPSTVFGSSNKLANVEQWRCVT 125

Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRRGFGGLSILKWS 263
            LR+  G+ +  +SW P   +LAS S +++   IW+  +   + T +R   G +  L W 
Sbjct: 126 ILRNHTGD-VMDVSWSPHDVWLASCSVDNT-IVIWNARKFPEMVTCLRGHTGLVKGLTWD 183

Query: 264 PTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAFA 315
           P G Y  +   D +  +W T  W  E     P+S   G   V   +W P+G+ ++ A A
Sbjct: 184 PVGKYIASQADDHSLRVWRTVDWQMEANITKPFSECGGTTHVLRLSWSPDGQYLVSAHA 242

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Takifugu rubripes (taxid: 31033)

>sp|Q8QFR2|HIRA_XENLA Protein HIRA OS=Xenopus laevis GN=hira PE=1 SV=2

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 19/179 (10%)

Query: 147 VKVLEWRPNGGRSLSVGCKGGICIWAPS-YPGNAASVRSGAASFLGALSRGPGTRWTLVD 205
           V  + W  NG    S G    I +W  S Y G   S   G++S L  + +     W  + 
Sbjct: 73  VNCVRWSNNGAYLASGGDDKLIMVWKRSGYIG--PSTVFGSSSKLANVEQ-----WRCLS 125

Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRRGFGGLSILKWS 263
            LRS +G+ +  ++W P   +LAS S +++   IW+  +   + + +R   G +  L W 
Sbjct: 126 ILRSHSGD-VMDVAWSPHDAWLASCSVDNT-VVIWNALKFPEIISTLRGHSGLVKGLTWD 183

Query: 264 PTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAFA 315
           P G Y  +   D +  +W T  W  E     P+    G   V   +W P+G  ++ A A
Sbjct: 184 PVGKYIASQADDHSIKVWRTMDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAHA 242

Required for the periodic repression of histone gene transcription during the cell cycle (By similarity). Required for replication-independent chromatin assembly.

Xenopus laevis (taxid: 8355)

>sp|P79987|HIRA_CHICK Protein HIRA OS=Gallus gallus GN=HIRA PE=1 SV=2

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 23/181 (12%)

Query: 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT-RWTLVD 205
           V  + W  NG    S G    I +W       AA +  G ++  G+ S+     +W  V 
Sbjct: 73  VNCVRWSNNGVYLASGGDDKLIMVWK-----RAAYI--GPSTVFGSSSKLTNVEQWRCVS 125

Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA---QGLGTPIRRGFGGLSI-LK 261
            LRS +G+ +  ++W P   +LAS S +++   IW+     + L T   +G  GL   L 
Sbjct: 126 ILRSHSGD-VMDVAWSPHDAWLASCSVDNT-VVIWNAVKFPEILAT--LKGHSGLVKGLT 181

Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAF 314
           W P G Y  +   D +  +W T  W  E     P+    G   V   +W P+G  ++ A 
Sbjct: 182 WDPVGKYIASQADDRSLKVWRTMDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAH 241

Query: 315 A 315
           A
Sbjct: 242 A 242

Cooperates with ASF1A to promote replication-independent chromatin assembly (By similarity). May regulate the transcription of a variety of genes controlling cell growth.

Gallus gallus (taxid: 9031)

>sp|O15736|TIPD_DICDI Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRRGFGGLSILKWSPT 265
           +NG   T  SW PDGRY+AS S +  S  IWD   G    + T +      +    WSP 
Sbjct: 537 RNGLNWTKASWSPDGRYIASGSID-GSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPL 595

Query: 266 GDYFFAAKFDGTFYLWE 282
            + F +A  D     WE
Sbjct: 596 ANIFISADKDKNIIQWE 612

Not known; disruption of the gene for tipD results in morphological defects.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LXN4|HIRA_ARATH Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260
           W  V  LR    + +  L+W PD   LAS S +++   IW++  G+ T + RG   LS++
Sbjct: 115 WKAVMTLRGHTAD-VVDLNWSPDDSMLASGSLDNT-VHIWNMRTGMCTTVLRGH--LSLV 170

Query: 261 K---WSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWSSTSG--FVTGATWDPEGRMI 310
           K   W P G +  +   D T  +W T+ W     T   W+ + G  F     W P G  +
Sbjct: 171 KGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHRTDGHWAKSLGSTFFRRLGWSPCGHFL 230

Histone chaperone involved in maintining knox genes silencing throughout leaf development. May be involved in heterochromatic and euchromatic gene silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG6|HIRA_MAIZE Protein HIRA OS=Zea mays PE=1 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 19/195 (9%)

Query: 120 STQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178
           S + + +D  +++ K   + T  D    V  + W  +G R L+ G    + +      G 
Sbjct: 41  SMESVHKDNTNNDSKQRLLATLRDHFGSVNCVRWAKHG-RYLASGSDDQVILIHERKAG- 98

Query: 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFT 238
                SG + F G+        W ++   R    + +  LSW PD   LAS S +++   
Sbjct: 99  -----SGTSEF-GSGEPPDAENWKVIMTWRGHTAD-VVDLSWSPDDSTLASGSLDNT-IH 150

Query: 239 IWDVAQGLGTPIRRGFGGLSI-LKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWS 292
           IW++  G+ T + RG   L   + W P G +  +   D T  +W T+ W     T   W+
Sbjct: 151 IWNMNNGICTAVLRGHTSLVKGVTWDPIGSFIASQSDDKTVMIWRTSDWSLAHKTEGHWT 210

Query: 293 STSG--FVTGATWDP 305
            + G  F     W P
Sbjct: 211 KSLGSTFFRRLAWSP 225

Histone chaperone involved in maintining knox genes silencing throughout leaf development.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
118486469	449	unknown [Populus trichocarpa]	0.994	0.775	0.740	1e-154
449516609	449	PREDICTED: aladin-like [Cucumis sativus]	0.991	0.772	0.750	1e-151
225440260	451	PREDICTED: aladin-like [Vitis vinifera]	0.994	0.771	0.738	1e-151
224137610	457	predicted protein [Populus trichocarpa]	0.994	0.761	0.709	1e-150
30694538	447	aladin-related / adracalin-related prote	0.997	0.780	0.709	1e-143
356570401	450	PREDICTED: aladin-like [Glycine max]	0.997	0.775	0.711	1e-143
297817004	447	hypothetical protein ARALYDRAFT_486131 [	0.997	0.780	0.703	1e-142
356503340	450	PREDICTED: aladin-like [Glycine max]	0.991	0.771	0.702	1e-135
9663009	440	putative protein [Arabidopsis thaliana]	0.977	0.777	0.683	1e-132
222616571	428	hypothetical protein OsJ_35105 [Oryza sa	0.985	0.806	0.611	1e-120

>gi|118486469|gb|ABK95074.1| unknown [Populus trichocarpa]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/354 (74%), Positives = 306/354 (86%), Gaps = 6/354 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP  GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+  + Q
Sbjct: 1   MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
           ESE + R  GE     GL  +L  +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60  ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119

Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175
           FISG  QVIVRDYEDSEGKDAC+L++ +Q+D++ LEWRPNGG+SLSV CKGGICIWA SY
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKGGICIWAASY 179

Query: 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 235
           PGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGRYLASAS ESS
Sbjct: 180 PGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYLASASCESS 239

Query: 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295
           SFTIWDV+QGLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS
Sbjct: 240 SFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 299

Query: 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
           GFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++TG
Sbjct: 300 GFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTMTG 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516609|ref|XP_004165339.1| PREDICTED: aladin-like [Cucumis sativus]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/353 (75%), Positives = 295/353 (83%), Gaps = 6/353 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP PGSVT+CEINRDLITAD LSDDRA DTYGK+LGMVF+PVPFQSD L S +P+ +
Sbjct: 1   MPSFPPPGSVTICEINRDLITADCLSDDRANDTYGKILGMVFSPVPFQSDFLVSPTPEPK 60

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
              +     GE     G+ ++L G I  S+  LL P+ V  LP   LQGVSWHQHKHI+A
Sbjct: 61  NEPRNDEVNGEIIQRKGVIASLQGFIEGSVNRLLRPNDVKYLPTEYLQGVSWHQHKHIIA 120

Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175
           FISG+ QV+VRDYE++EGKD CILT D QRDVKVLEWRPNGGR+LSV CKGGICIWA S+
Sbjct: 121 FISGTNQVVVRDYENAEGKDPCILTHDLQRDVKVLEWRPNGGRTLSVACKGGICIWAASF 180

Query: 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 235
           PGNAASVR GA SFLG+ SRG G R+TLVDFLRS + EQI+ALSW PDGRYLASA+YESS
Sbjct: 181 PGNAASVRPGAVSFLGSFSRGSGVRYTLVDFLRSHD-EQISALSWSPDGRYLASATYESS 239

Query: 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295
           SFTIWDVAQGLGTPIRRG G +S +KWSPTGDYFFAAKFDGTFYLWETN+WTSE WSSTS
Sbjct: 240 SFTIWDVAQGLGTPIRRGLGCVSTIKWSPTGDYFFAAKFDGTFYLWETNSWTSEQWSSTS 299

Query: 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 348
           GFVTGA WDPEGRMILLAF+GS  LGSIHFASKPPSL AHLLPVDLP+I + T
Sbjct: 300 GFVTGAIWDPEGRMILLAFSGSSVLGSIHFASKPPSLVAHLLPVDLPEITTST 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440260|ref|XP_002283996.1| PREDICTED: aladin-like [Vitis vinifera]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/356 (73%), Positives = 302/356 (84%), Gaps = 8/356 (2%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP+PGSVTVCEINR+LITA NLSDD AKD YGK LGMVF+PVPFQ D+L + SP+  
Sbjct: 1   MRSFPQPGSVTVCEINRNLITALNLSDDGAKDAYGKQLGMVFSPVPFQWDQLLALSPE-H 59

Query: 61  ESEQRGREEGEG-------LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHI 113
            +EQ  +  GE        L + L  I++ S+K   HP+ V+ LPEVDLQGVSWH+HKHI
Sbjct: 60  GAEQPPQVTGESVAPRRKDLSTALQRIVNDSLKRFFHPNDVNCLPEVDLQGVSWHRHKHI 119

Query: 114 VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173
           +AFISG  QVIVRDYEDSEGK+ CILT +SQRDVK++EWRPNGG++LSV CKGGIC+WA 
Sbjct: 120 LAFISGPNQVIVRDYEDSEGKEPCILTHESQRDVKLIEWRPNGGKTLSVACKGGICMWAA 179

Query: 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 233
           SYPGNAA  RSG A F G ++RG G RWT+VDFL+SQN EQI+ALSW P+GRYLASASYE
Sbjct: 180 SYPGNAAIARSGVAPFFGTVARGSGIRWTVVDFLQSQNDEQISALSWSPNGRYLASASYE 239

Query: 234 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293
           SSSFTIWDVA+GLGTPIRRG GG+SILKWSPTGDYF +AKFDGTFYLWETNTWTSEPWSS
Sbjct: 240 SSSFTIWDVAKGLGTPIRRGLGGISILKWSPTGDYFLSAKFDGTFYLWETNTWTSEPWSS 299

Query: 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
           TSGFVTGATWDP+G M+L+AF+ S TLGS+HFASKPPSLDAHLLPVDLP+I+SLTG
Sbjct: 300 TSGFVTGATWDPDGHMVLIAFSKSSTLGSVHFASKPPSLDAHLLPVDLPEIMSLTG 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137610|ref|XP_002322600.1| predicted protein [Populus trichocarpa] gi|222867230|gb|EEF04361.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/362 (70%), Positives = 302/362 (83%), Gaps = 14/362 (3%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP  GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+  + Q
Sbjct: 1   MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
           ESE + R  GE     GL  +L  +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60  ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119

Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GG 167
           FISG  QVIVRDYEDSEGKDAC+L++ +Q+D++ LEWRPNGG+SLSV CK        GG
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKQVSKLKFLGG 179

Query: 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227
           ICIWA SYPGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGRY 
Sbjct: 180 ICIWAASYPGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYP 239

Query: 228 ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287
               +ESSSFTIWDV+QGLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWT
Sbjct: 240 DQFKFESSSFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWT 299

Query: 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347
           SEPWSSTSGFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++
Sbjct: 300 SEPWSSTSGFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTM 359

Query: 348 TG 349
           TG
Sbjct: 360 TG 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694538|ref|NP_191249.2| aladin-related / adracalin-related protein [Arabidopsis thaliana] gi|26452390|dbj|BAC43280.1| unknown protein [Arabidopsis thaliana] gi|28951013|gb|AAO63430.1| At3g56900 [Arabidopsis thaliana] gi|332646063|gb|AEE79584.1| aladin-related / adracalin-related protein [Arabidopsis thaliana]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/351 (70%), Positives = 289/351 (82%), Gaps = 2/351 (0%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   ++ S+K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
            QV +RDYED + K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query: 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query: 241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 298
           DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW  SS SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query: 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTG 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570401|ref|XP_003553377.1| PREDICTED: aladin-like [Glycine max]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/354 (71%), Positives = 294/354 (83%), Gaps = 5/354 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSS---P 57
           M SFP PGS+T+CE+NRDLIT D LSDDRA  TYGK+LG+VF+PVPF + E  +S    P
Sbjct: 1   MASFPPPGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHNLENDASDQEGP 60

Query: 58  DRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFI 117
              E+      + +   + L G++++ +  L +P+ VHLLPEVDLQGVSWH +KHI+AFI
Sbjct: 61  TATETAAGESVQRKCPVALLQGLVNNYLGRLFYPNDVHLLPEVDLQGVSWHPNKHIIAFI 120

Query: 118 SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177
           S  TQV+VRDY++SEGKD  ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SYPG
Sbjct: 121 SAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPG 180

Query: 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 237
           NAASVRSGAASFLG LSR  G R+ LVDFLRS   E ++ALSW PDGRYLASASYESSSF
Sbjct: 181 NAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALSWSPDGRYLASASYESSSF 240

Query: 238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 297
           T+WD AQG+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTSGF
Sbjct: 241 TVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGF 300

Query: 298 VT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
           V   GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTG
Sbjct: 301 VKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTG 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817004|ref|XP_002876385.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata] gi|297322223|gb|EFH52644.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/351 (70%), Positives = 286/351 (81%), Gaps = 2/351 (0%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA +TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERALETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   +S  +K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASVESKGLVATLQMKVSDILKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
            QV +RDY+D + K+ C+LTSDSQR VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYDDKDEKEPCVLTSDSQRSVKALEWRPNGGKSLSISCRGGICIWAASYPGNMA 180

Query: 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query: 241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 298
           DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW  SS SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query: 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTG 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503340|ref|XP_003520468.1| PREDICTED: aladin-like [Glycine max]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/356 (70%), Positives = 292/356 (82%), Gaps = 9/356 (2%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP  GS+T+CE+NRDLIT D LSDDRA  TYGK+LG+VF+PVPF +  L + + D+ 
Sbjct: 1   MASFPPLGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHN--LENDASDQD 58

Query: 61  ESEQRGREEGEGL-----FSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
            +       GE +      + L G ++  +  L +PD VHLLPEVDLQGVSWH +KHI+A
Sbjct: 59  GATTTATTAGESVRRKSPVALLQGFMNSYLGRLFYPDDVHLLPEVDLQGVSWHPNKHIIA 118

Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175
           FIS  TQV+VRDY++SEGKD  ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SY
Sbjct: 119 FISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASY 178

Query: 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 235
           PGNAASVRSGAASFLG LSR  G R+ LVDFLRS   E ++AL+W PDGRYLASASYESS
Sbjct: 179 PGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALTWSPDGRYLASASYESS 238

Query: 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295
           SF++WD AQG+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTS
Sbjct: 239 SFSVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTS 298

Query: 296 GFVT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
           GFV   GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTG
Sbjct: 299 GFVKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTG 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9663009|emb|CAC00753.1| putative protein [Arabidopsis thaliana]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/351 (68%), Positives = 282/351 (80%), Gaps = 9/351 (2%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   ++ S+K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
            QV +RDYED + K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query: 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALS        + +SY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALS-------WSPSSYDSSSFTIW 233

Query: 241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 298
           DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW  SS SG V
Sbjct: 234 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 293

Query: 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG
Sbjct: 294 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTG 344

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222616571|gb|EEE52703.1| hypothetical protein OsJ_35105 [Oryza sativa Japonica Group]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/350 (61%), Positives = 263/350 (75%), Gaps = 5/350 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP PG VTVCEINRDL+ AD LSDDRAKD YG VLGMVF+P+PFQ D  A+ +    
Sbjct: 1   MPSFPPPGGVTVCEINRDLVVADALSDDRAKDAYGDVLGMVFSPIPFQPD--ATVATHEP 58

Query: 61  ESEQRGREEGEGLFST-LHGIISHSIKPLLHPD-HVHLLPEVDLQGVSWHQHKHIVAFIS 118
            +     E  E +  T L   I+ S K +L P  + +LL E+D Q VSW+ HKH +AF+S
Sbjct: 59  PAVTEAAEPAEVVPRTSLASTIAESFKQMLFPSCNPNLLQEIDTQKVSWNPHKHCLAFVS 118

Query: 119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178
           G  QV V D+E+ + K++ ILTSD Q+DVK +EWRPN G+ ++VGCKGGIC+W+ SYPGN
Sbjct: 119 GKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGKVIAVGCKGGICLWSASYPGN 178

Query: 179 AASVRSGA-ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 237
            ASV+SG  +S  GA  RG G +W LVD LR  + E ++AL W PDGRYL SAS  S SF
Sbjct: 179 VASVKSGVTSSSFGAFPRGSGGQWILVDILRGSSAELVSALCWKPDGRYLVSASCNSPSF 238

Query: 238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 297
           TIWDV+QGLGTPIRRG   +S+++WSP+GDY   AK DGTF+LWETNTWTSEPWSS++G+
Sbjct: 239 TIWDVSQGLGTPIRRGLSSISLVRWSPSGDYLLTAKLDGTFHLWETNTWTSEPWSSSNGY 298

Query: 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347
           V+GA WDPEGR  LL+F+ S TLGSIHF+SKPPSLDAHLLPV+LP+I SL
Sbjct: 299 VSGANWDPEGRTALLSFSNSTTLGSIHFSSKPPSLDAHLLPVELPEISSL 348

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2103620	447	AT3G56900 [Arabidopsis thalian	0.997	0.780	0.683	1.3e-130
FB|FBgn0030122	466	CG16892 [Drosophila melanogast	0.388	0.291	0.351	2.2e-22
ZFIN|ZDB-GENE-030912-4	499	aaas "achalasia, adrenocortica	0.522	0.366	0.313	9.1e-22
MGI|MGI:2443767	546	Aaas "achalasia, adrenocortica	0.477	0.305	0.299	4.8e-17
RGD|1308701	544	Aaas "achalasia, adrenocortica	0.468	0.301	0.304	3.7e-16
UNIPROTKB|Q9NRG9	546	AAAS "Aladin" [Homo sapiens (t	0.477	0.305	0.299	6.7e-16
UNIPROTKB|Q0VC02	556	AAAS "Uncharacterized protein"	0.477	0.300	0.299	9.2e-16
UNIPROTKB|F8VZ44	422	AAAS "Aladin" [Homo sapiens (t	0.477	0.395	0.299	1.5e-15
UNIPROTKB|H9L088	369	AAAS "Uncharacterized protein"	0.474	0.449	0.277	1.7e-15
UNIPROTKB|F1SFR0	559	AAAS "Uncharacterized protein"	0.582	0.364	0.289	7.2e-15

TAIR|locus:2103620 AT3G56900 [Arabidopsis thaliana (taxid:3702)]

 Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
 Identities = 240/351 (68%), Positives = 276/351 (78%)

Query:     1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDXX 60
             M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    +  
Sbjct:     1 MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query:    61 XXXXXXXXXXXXLFSTLHGIISHSIKXXXXXXXXXXXXEVDLQGVSWHQHKHIVAFISGS 120
                         L +TL   ++ S+K            E+DLQGVSWHQ KHI+AFISG+
Sbjct:    61 ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query:   121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
              QV +RDYED + K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct:   121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query:   181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
              VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct:   181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query:   241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFV 298
             DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS  S SG V
Sbjct:   241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query:   299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349
             TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG
Sbjct:   301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTG 351

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0030122 CG16892 [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
 Identities = 51/145 (35%), Positives = 71/145 (48%)

Query:   205 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWS 263
             +  +  N   IT++ W  DG  LA+AS    S  IW    G+  P++R G  G S+LKWS
Sbjct:   224 EIFKYPNNLPITSMQWNKDGTQLATASIGDRSIIIWQPDTGMMQPLKRLGPPG-SLLKWS 282

Query:   264 PTGDYFFAAKFDGTFYLWETNT-WTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
             P  D+ FAA  D  F +W  +  WT+E W     G+V  A W P GR +L   +    L 
Sbjct:   283 PDNDWLFAATVDRVFRVWNCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILY 342

Query:   322 SIHFASKP---PSLDA-HLLPV-DL 341
              + F  +     S D   +LP+ DL
Sbjct:   343 RLQFVQQSLLSSSADEKEILPIADL 367

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

ZFIN|ZDB-GENE-030912-4 aaas "achalasia, adrenocortical insufficiency, alacrimia" [Danio rerio (taxid:7955)]

 Score = 260 (96.6 bits), Expect = 9.1e-22, P = 9.1e-22
 Identities = 63/201 (31%), Positives = 89/201 (44%)

Query:   144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
             QR V  L+W+P  G +L+V C+  + IW       +    SG A  L      P      
Sbjct:   183 QRSVCALQWKPLCGSALAVACQSCLLIWHVDPASLSTRPSSGCAQVLSHPGHSP------ 236

Query:   204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKW 262
                        IT+++W P G  L SAS   ++  +WDVA     P+RR G GG++ L W
Sbjct:   237 -----------ITSIAWSPTGSLLVSASPVDTAMMVWDVAAESCVPLRRVGGGGVTFLSW 285

Query:   263 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322
             SP G    AA     F +WET  WT E W    G    A W P+G  +LL+  G   + +
Sbjct:   286 SPDGSRLLAATPSALFRVWETRMWTCERWPCLKGSCQSACWSPDGACLLLSIQGERLIYA 345

Query:   323 IHFASKPPSLDAHLLPVDLPD 343
             + F+       A  +  DL +
Sbjct:   346 LSFSDLTGGPKAATVVADLSE 366

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2443767 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Mus musculus (taxid:10090)]

 Score = 222 (83.2 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 56/187 (29%), Positives = 79/187 (42%)

Query:   144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
             QR+V  L W+P     L+V C+  I IW       +    SG A  L      P      
Sbjct:   193 QRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 246

Query:   204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
                        +T+L+W P+G +L SAS   +   +WDV+     P+   RG GG++ L 
Sbjct:   247 -----------VTSLAWAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLL 294

Query:   262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
             WSP G    A      F +WE   WT E W + SG      W P+G  +L    G   + 
Sbjct:   295 WSPDGSKVLATTPSAVFRVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIY 354

Query:   322 SIHFASK 328
             S+ F  +
Sbjct:   355 SLSFPER 361

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=ISO

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0007612 "learning" evidence=IMP

GO:0009566 "fertilization" evidence=IMP

RGD|1308701 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 56/184 (30%), Positives = 79/184 (42%)

Query:   144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
             QR+V  L W+P     L+V C+  I IW       +    SG A  L      P      
Sbjct:   191 QRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 244

Query:   204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
                        +T+L+W P+G +L SAS   +   +WDV+     P+   RG GG++ L 
Sbjct:   245 -----------VTSLAWAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLL 292

Query:   262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
             WSP G    A      F +WE   WT E W + SG      W P+G+ +L    G   + 
Sbjct:   293 WSPDGSKVLATTPSAVFRVWEARMWTCEGWPTLSGRCQTGCWSPDGKRLLFTVLGEALIY 352

Query:   322 SIHF 325
             S+ F
Sbjct:   353 SLSF 356

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0007612 "learning" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009566 "fertilization" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q9NRG9 AAAS "Aladin" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
 Identities = 56/187 (29%), Positives = 78/187 (41%)

Query:   144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
             QR+V  L W+P     L+V C+  I IW       +    SG A  L      P      
Sbjct:   193 QRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 246

Query:   204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
                        +T+L+W P G  L SAS   ++  +WDV+     P+   RG GG++ L 
Sbjct:   247 -----------VTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLL 294

Query:   262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
             WSP G    A      F +WE   WT E W + SG      W P+G  +L    G   + 
Sbjct:   295 WSPDGSKILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIY 354

Query:   322 SIHFASK 328
             S+ F  +
Sbjct:   355 SLSFPER 361

GO:0007612 "learning" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IDA

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|Q0VC02 AAAS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
 Identities = 56/187 (29%), Positives = 77/187 (41%)

Query:   144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
             QR+V  L W+P     L+V C+  I IW       +    SG A  L      P      
Sbjct:   193 QRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 246

Query:   204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
                        +T+L+W P G  L SAS   ++  +WDV+     P+   RG GG++ L 
Sbjct:   247 -----------VTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRG-GGVTNLL 294

Query:   262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
             WSP G    A      F +WE   WT E W + SG      W P G  +L    G   + 
Sbjct:   295 WSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPSGNRLLFTVLGEPLIY 354

Query:   322 SIHFASK 328
             S+ F  +
Sbjct:   355 SLSFPER 361

GO:0031965 "nuclear membrane" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F8VZ44 AAAS "Aladin" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 56/187 (29%), Positives = 78/187 (41%)

Query:   144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
             QR+V  L W+P     L+V C+  I IW       +    SG A  L      P      
Sbjct:    69 QRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 122

Query:   204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
                        +T+L+W P G  L SAS   ++  +WDV+     P+   RG GG++ L 
Sbjct:   123 -----------VTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLL 170

Query:   262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
             WSP G    A      F +WE   WT E W + SG      W P+G  +L    G   + 
Sbjct:   171 WSPDGSKILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIY 230

Query:   322 SIHFASK 328
             S+ F  +
Sbjct:   231 SLSFPER 237

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|H9L088 AAAS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 51/184 (27%), Positives = 78/184 (42%)

Query:   144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
             QR+V  + W+P     L+V C+  + +W       +    SG A  L      P      
Sbjct:    44 QRNVAAVAWKPLCASILAVACQSCVLVWHLDPTSLSTRPSSGCAQVLSYPGHSP------ 97

Query:   204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKW 262
                        +T+L+W P G+ L SAS   ++  +WDV+      ++  G GG++ L W
Sbjct:    98 -----------VTSLAWAPSGKLLLSASPVDTAMLVWDVSTENCVQLQWFGGGGVTFLAW 146

Query:   263 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322
             SP G    AA     F +WE   WT E W +  G      W P+G  +L    G   + S
Sbjct:   147 SPDGSKVLAATPSAVFKVWEAQMWTCEKWPTIKGRCQTGCWSPDGSRLLFTVLGESVIYS 206

Query:   323 IHFA 326
             + F+
Sbjct:   207 LSFS 210

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|F1SFR0 AAAS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 208 (78.3 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 66/228 (28%), Positives = 95/228 (41%)

Query:   102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS 161
             L+  +WH H +   F        +R Y ++       L    QR+V  L W+P     L+
Sbjct:   154 LRVFAWHPHTN--KFAVALLDDSIRVY-NANSTIVPSLKHRLQRNVAALAWKPLSASVLA 210

Query:   162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221
             V C+  I IW    P  + S R  ++     LS  PG                +T+L+W 
Sbjct:   211 VACQSCILIWTLD-P-TSLSTRRPSSGCAQVLSH-PGHT-------------PVTSLAWA 254

Query:   222 PDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFY 279
             P G  L SAS   ++  +WDV+     P+   RG GG++ L WSP G    A      F 
Sbjct:   255 PSGGRLLSASPVDAAILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFR 313

Query:   280 --LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325
               +WE   WT E W + SG      W P+G  +L    G   + S+ F
Sbjct:   314 RRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLF 361

GO:0031965 "nuclear membrane" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFA 271
           ++ ++++ PDG  L S+S    +  +WD++ G  LGT      G  S+  +SP G    +
Sbjct: 179 EVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FSPDGYLLAS 236

Query: 272 AKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMI 310
              DGT  +W+  T    +  S  +  VT   W P+G+ +
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 48/281 (17%), Positives = 90/281 (32%), Gaps = 34/281 (12%)

Query: 40  MVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPE 99
              +    +  + +   P             E     L  +    +        +    E
Sbjct: 6   STSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHE 65

Query: 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS 159
             +  +++     ++   S    + + D ++ E K    L       V  L      G S
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNS 124

Query: 160 LSVGCKGG---ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 216
           + +        + +W  S                        T   L+  L   +   +T
Sbjct: 125 ILLASSSLDGTVKLWDLS------------------------TPGKLIRTLEGHSES-VT 159

Query: 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF- 274
           +L++ PDG+ LAS S    +  +WD+  G       G    +S L +SP G    A+   
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 275 DGTFYLWETNTWTSEPWSSTSGFVTGA--TWDPEGRMILLA 313
           DGT  LW+ +T      S+ SG       ++ P+G ++   
Sbjct: 220 DGTIRLWDLSTG-KLLRSTLSGHSDSVVSSFSPDGSLLASG 259

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 22/230 (9%)

Query: 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL 160
            +  +++     ++   SGS+   +R ++ S GK     T     D  V  + P+G    
Sbjct: 200 PVSSLAFSPDGGLL-IASGSSDGTIRLWDLSTGK-LLRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW------------------- 201
           S    G I +W      +     SG +S + +++  P  +                    
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317

Query: 202 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 261
            L       +   +++LS+ PDG  L S   +  +  +WD+  G       G   +  + 
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS 377

Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMI 310
           +SP G    +   DGT  LW+ +T +        +  VT   + P+G+ +
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.5 bits (106), Expect = 3e-05
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 22/201 (10%)

Query: 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK 165
           S+     ++A  S    + + D   S      +    S   V  + + P+G    S    
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS--VLSVAFSPDGKLLASGSSD 305

Query: 166 GGICIW---------APSYPGNAASVRS------GAASFLGALSRGPGTRWTLVDFLRSQ 210
           G + +W         + +  G+   V S      G+    G    G    W L      +
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365

Query: 211 N---GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI-LKWSPTG 266
                  + ++S+ PDGR ++S S    +  +WD++ G       G       L +SP G
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGS-TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 267 DYFFAAKFDGTFYLWETNTWT 287
               +   D T  LW+  T  
Sbjct: 425 KSLASGSSDNTIRLWDLKTSL 445

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 34/212 (16%)

Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 164
           V++     ++A  SG   + V D E  E        +   RDV       +G    S   
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA---ASADGTYLASGSS 71

Query: 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224
              I +W          + +G                TL           ++++++ PDG
Sbjct: 72  DKTIRLW---------DLETGE------------CVRTLTGHT-----SYVSSVAFSPDG 105

Query: 225 RYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWET 283
           R L+S+S    +  +WDV  G      RG    ++ + +SP G +  ++  DGT  LW+ 
Sbjct: 106 RILSSSSR-DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 284 NTWTSEPWSST--SGFVTGATWDPEGRMILLA 313
            T      + T  +G V    + P+G  +L +
Sbjct: 165 RTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSS 195

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFA 271
           +T +++ PDG+ LA+ S    +  +WD+    G  +R      G +  +  S  G Y  +
Sbjct: 12  VTCVAFSPDGKLLATGSG-DGTIKVWDLET--GELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 272 AKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMIL 311
              D T  LW+  T       +  + +V+   + P+GR++ 
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 37/182 (20%)

Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVG 163
           V++      VA  S    + +  ++   GK  C+ T +    +V  + + P+G + LS  
Sbjct: 141 VAFSPDGTFVASSSQDGTIKL--WDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSS 196

Query: 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223
             G I +W          + +G                  +  LR      + ++++ PD
Sbjct: 197 SDGTIKLW---------DLSTGK----------------CLGTLRGHE-NGVNSVAFSPD 230

Query: 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFDGTFYL 280
           G  LAS S E  +  +WD+    G  ++   G    ++ L WSP G    +   DGT  +
Sbjct: 231 GYLLASGS-EDGTIRVWDLR--TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Query: 281 WE 282
           W+
Sbjct: 288 WD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG2139	445	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.98
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
PTZ00421	493	coronin; Provisional	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.93
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
PTZ00420	568	coronin; Provisional	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
PTZ00421	493	coronin; Provisional	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
PTZ00420	568	coronin; Provisional	99.9
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.9
PLN00181	793	protein SPA1-RELATED; Provisional	99.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0296	399	consensus Angio-associated migratory cell protein	99.88
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG0641	350	consensus WD40 repeat protein [General function pr	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.86
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.84
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.84
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.84
KOG1539	910	consensus WD repeat protein [General function pred	99.84
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.83
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.83
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.83
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.83
KOG0643	327	consensus Translation initiation factor 3, subunit	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.83
KOG0267	825	consensus Microtubule severing protein katanin p80	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG0641	350	consensus WD40 repeat protein [General function pr	99.82
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.82
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.81
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.79
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0646	476	consensus WD40 repeat protein [General function pr	99.78
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG4328	498	consensus WD40 protein [Function unknown]	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.76
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.76
KOG2048	691	consensus WD40 repeat protein [General function pr	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.75
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
PRK04922	433	tolB translocation protein TolB; Provisional	99.75
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.75
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.75
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.74
KOG4328	498	consensus WD40 protein [Function unknown]	99.74
KOG2096	420	consensus WD40 repeat protein [General function pr	99.74
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.74
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.73
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.73
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.72
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.7
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
KOG2048	691	consensus WD40 repeat protein [General function pr	99.69
KOG1539	910	consensus WD repeat protein [General function pred	99.69
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.69
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
PRK00178	430	tolB translocation protein TolB; Provisional	99.68
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
PRK01029	428	tolB translocation protein TolB; Provisional	99.67
PRK04792	448	tolB translocation protein TolB; Provisional	99.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
KOG1188	376	consensus WD40 repeat protein [General function pr	99.65
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
KOG1310	758	consensus WD40 repeat protein [General function pr	99.65
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.64
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.63
KOG1273	405	consensus WD40 repeat protein [General function pr	99.62
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
PRK04043	419	tolB translocation protein TolB; Provisional	99.58
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.58
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.57
PRK01029	428	tolB translocation protein TolB; Provisional	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.55
KOG4227	609	consensus WD40 repeat protein [General function pr	99.55
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.54
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.53
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.49
COG2319	466	FOG: WD40 repeat [General function prediction only	99.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.48
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.46
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.44
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.44
KOG1963	792	consensus WD40 repeat protein [General function pr	99.44
COG2319	466	FOG: WD40 repeat [General function prediction only	99.44
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.43
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.4
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.37
KOG1188	376	consensus WD40 repeat protein [General function pr	99.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.35
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.34
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.34
KOG4227	609	consensus WD40 repeat protein [General function pr	99.33
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.31
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.31
PRK04043	419	tolB translocation protein TolB; Provisional	99.29
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.28
COG4946	668	Uncharacterized protein related to the periplasmic	99.28
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.25
KOG2321	703	consensus WD40 repeat protein [General function pr	99.23
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.21
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.19
KOG2321	703	consensus WD40 repeat protein [General function pr	99.19
KOG1334	559	consensus WD40 repeat protein [General function pr	99.16
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG2315	566	consensus Predicted translation initiation factor	99.12
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.09
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.09
KOG2315	566	consensus Predicted translation initiation factor	99.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
KOG1310	758	consensus WD40 repeat protein [General function pr	99.05
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.04
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
KOG2314	698	consensus Translation initiation factor 3, subunit	99.02
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.0
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.9
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.9
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.86
KOG4547	541	consensus WD40 repeat-containing protein [General	98.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.77
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.76
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.74
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.66
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.64
KOG2314	698	consensus Translation initiation factor 3, subunit	98.62
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.61
KOG1334	559	consensus WD40 repeat protein [General function pr	98.61
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.59
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.59
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.55
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.54
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.53
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.5
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.5
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.47
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.47
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.47
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.44
PRK02888	635	nitrous-oxide reductase; Validated	98.4
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.37
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.37
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.37
KOG2695	425	consensus WD40 repeat protein [General function pr	98.36
KOG2695	425	consensus WD40 repeat protein [General function pr	98.34
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.3
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.29
PRK13616	591	lipoprotein LpqB; Provisional	98.28
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.25
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.25
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.21
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.2
COG3391	381	Uncharacterized conserved protein [Function unknow	98.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.14
KOG3621	726	consensus WD40 repeat-containing protein [General	98.08
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.08
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.02
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.01
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.99
COG3391	381	Uncharacterized conserved protein [Function unknow	97.96
PRK13616	591	lipoprotein LpqB; Provisional	97.94
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.93
PRK02888	635	nitrous-oxide reductase; Validated	97.92
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.89
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.87
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.84
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.81
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.8
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.75
KOG3621	726	consensus WD40 repeat-containing protein [General	97.71
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.6
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.58
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.57
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.51
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.47
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.47
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.4
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.4
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.4
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.36
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.3
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.27
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.26
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.24
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.11
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.07
KOG2395	644	consensus Protein involved in vacuole import and d	97.07
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.02
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.98
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.89
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.84
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.83
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.83
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.82
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.79
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.71
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.59
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.47
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.36
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.33
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.18
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.1
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.03
PRK10115	686	protease 2; Provisional	96.0
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.91
KOG2444	238	consensus WD40 repeat protein [General function pr	95.79
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.73
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.7
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.6
KOG2247	615	consensus WD40 repeat-containing protein [General	95.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.56
KOG2395	644	consensus Protein involved in vacuole import and d	95.54
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.48
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.32
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.3
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.21
KOG2444	238	consensus WD40 repeat protein [General function pr	95.2
PRK10115	686	protease 2; Provisional	95.18
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.16
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.99
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.79
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.7
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.69
KOG2247	615	consensus WD40 repeat-containing protein [General	94.64
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.61
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.47
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.47
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.44
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.99
COG5167	776	VID27 Protein involved in vacuole import and degra	93.91
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.79
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.75
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.73
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.7
COG4590	733	ABC-type uncharacterized transport system, permeas	93.1
PRK13684	334	Ycf48-like protein; Provisional	92.76
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.68
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.58
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.49
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.47
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.46
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.27
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.25
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.24
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.23
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.05
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.8
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.73
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.65
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.43
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	91.28
PRK13684	334	Ycf48-like protein; Provisional	91.19
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	90.99
PHA02713	557	hypothetical protein; Provisional	90.76
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.59
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.53
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.03
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.65
COG4590	733	ABC-type uncharacterized transport system, permeas	89.61
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	89.49
PHA03098	534	kelch-like protein; Provisional	89.36
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.26
PHA02713	557	hypothetical protein; Provisional	89.25
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.97
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.7
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.68
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.46
PHA03098	534	kelch-like protein; Provisional	87.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.19
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.17
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.11
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	86.99
PRK13615	557	lipoprotein LpqB; Provisional	86.55
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.42
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.62
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	85.13
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	84.96
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.79
PLN02193	470	nitrile-specifier protein	84.31
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	84.1
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	83.85
PLN02153	341	epithiospecifier protein	83.52
COG5276	370	Uncharacterized conserved protein [Function unknow	83.25
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.12
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	82.12
PRK13615	557	lipoprotein LpqB; Provisional	82.03
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.09
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.39
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	80.11

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-35  Score=240.84  Aligned_cols=242  Identities=19%  Similarity=0.320  Sum_probs=188.6

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ++.+|-|++|+|+|..||+|+.|.++++||+++.+.  .... ++|...|.+++|+|||+.|++++.||+|++||...++
T Consensus       114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            356899999999999999999999999999976433  2333 6899999999999999999999999999999988776


Q ss_pred             CCceeecccccccceecC---------------CCCCceEEee--------eccCCCCCceeeEEECCCCCeEEEEEeCC
Q 018806          178 NAASVRSGAASFLGALSR---------------GPGTRWTLVD--------FLRSQNGEQITALSWGPDGRYLASASYES  234 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  234 (350)
                      .......++...+..+++               +.|+..++|+        .+.+|. ..|+++.|--+| +|++++.| 
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrwGG~g-liySgS~D-  267 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRWGGEG-LIYSGSQD-  267 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEEcCCc-eEEecCCC-
Confidence            655555554444444332               3355555443        567887 689999996544 78888888 


Q ss_pred             CeEEEEeCCCC---------------------------------------------------------------------
Q 018806          235 SSFTIWDVAQG---------------------------------------------------------------------  245 (350)
Q Consensus       235 g~i~iwd~~~~---------------------------------------------------------------------  245 (350)
                      ++|++|+...|                                                                     
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            59999987664                                                                     


Q ss_pred             ----------Cc-eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEE
Q 018806          246 ----------LG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       246 ----------~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                                ++ ..+.+|..-|..+.||||+++||+++.|+.|++||.++|+.. .+.+|-..|+.++|+.|.++|+++
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~  427 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG  427 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence                      00 123456667899999999999999999999999999999984 577899999999999999999977


Q ss_pred             E-CCCeEEEEEEeCCCCCCCceeecccccceee
Q 018806          314 F-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       314 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  345 (350)
                      + |....+|+++.......+.+|...|-.-.+.
T Consensus       428 SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws  460 (480)
T KOG0271|consen  428 SKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS  460 (480)
T ss_pred             CCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence            6 5445566665555566888898877655444

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-35  Score=242.09  Aligned_cols=244  Identities=19%  Similarity=0.314  Sum_probs=191.4

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCcc------------------------CeeEEEEecCCCEEEEEECCCeEEEEEcc
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~~------------------------~V~~v~~sp~g~~la~~s~d~~i~iw~~~  129 (350)
                      ...+.||...+++..+.|+...++.+.                        .|.|++|+|||+.||+|+.||+|++||..
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            467789999999999999777776643                        59999999999999999999999999985


Q ss_pred             CCCCCceeEecCCCCCCeeEEEEee-----CCCeEEEEecCCcEEEEecCCCCCCceeecccccccceec----------
Q 018806          130 DSEGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS----------  194 (350)
Q Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~----------  194 (350)
                        ++++......+|...|++++|.|     ..+++++++.||.++|||+..+.....+ .++..++..+.          
T Consensus       188 --tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~gliySg  264 (480)
T KOG0271|consen  188 --TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEGLIYSG  264 (480)
T ss_pred             --CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCceEEec
Confidence              46666666679999999999965     4567777788999999999732221111 11111111111          


Q ss_pred             -----------------------------------------------------------------------------CCC
Q 018806          195 -----------------------------------------------------------------------------RGP  197 (350)
Q Consensus       195 -----------------------------------------------------------------------------~~~  197 (350)
                                                                                                   .+.
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence                                                                                         111


Q ss_pred             CCceEEee---------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCC
Q 018806          198 GTRWTLVD---------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGD  267 (350)
Q Consensus       198 ~~~~~~~~---------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~  267 (350)
                      +..+.+|+         .+.+|. ..|..+.||||++++|+++.|+ .|++||.++|+... +.+|-..|+.++|+.|.+
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq-~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQ-ALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR  422 (480)
T ss_pred             CceEEEecccccccchhhhhchh-hheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence            11222333         344564 6899999999999999999996 99999999998765 556899999999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          268 YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       268 ~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +|++|+.|.++++|++++.+. ..+.+|...|..+.|+|||+.++.++    ....+++|
T Consensus       423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg----kdkv~~lw  478 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG----KDKVLRLW  478 (480)
T ss_pred             EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC----CceEEEee
Confidence            999999999999999999998 56889999999999999999999774    44455554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-33  Score=233.05  Aligned_cols=220  Identities=16%  Similarity=0.222  Sum_probs=190.7

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      .+|..+.||+|++.||+|+.+|.++||....  ....+.+ .+|...|.++.|+|.  +..+++++.||++++|++....
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCC--cceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            4899999999999999999999999999954  5544544 699999999999998  4588899999999999998443


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG  256 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~  256 (350)
                      .                         +..+.+|. ..|..++|+|+|++|++++.|. +-++||+.++.... ..+|..+
T Consensus       253 ~-------------------------l~~l~gH~-~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk~ElL~QEGHs~~  305 (459)
T KOG0272|consen  253 P-------------------------LQDLEGHL-ARVSRVAFHPSGKFLGTASFDS-TWRLWDLETKSELLLQEGHSKG  305 (459)
T ss_pred             c-------------------------hhhhhcch-hhheeeeecCCCceeeeccccc-chhhcccccchhhHhhcccccc
Confidence            2                         44477886 7999999999999999999996 99999999987654 4568899


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCce
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDA  334 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~  334 (350)
                      |.+++|++||..+++|+.|..-+|||++++.+ ..+.+|..+|.+++|+|+|..|++|+ |+...||+++..+....+.+
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA  385 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA  385 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence            99999999999999999999999999999998 56779999999999999999999987 77788888888777778889


Q ss_pred             eecccccceeecccC
Q 018806          335 HLLPVDLPDIVSLTG  349 (350)
Q Consensus       335 ~~~~v~~~~~~~~~g  349 (350)
                      |..-|..-.+.+..|
T Consensus       386 H~nlVS~Vk~~p~~g  400 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEG  400 (459)
T ss_pred             ccchhhheEecccCC
Confidence            998887666655333

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-34  Score=237.00  Aligned_cols=215  Identities=17%  Similarity=0.229  Sum_probs=183.2

Q ss_pred             CeeEEEEecC--CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~--g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      .|.++.|+|.  +..||+|+.||++++|+++.  ...+..+ .+|...|..++|+|+|+.|.+++.|.+-++||+.++..
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E  295 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--ETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE  295 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeeccCC--Ccchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchh
Confidence            4889999997  57899999999999999964  3444444 58999999999999999999999999999999995543


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v  257 (350)
                      ..                         ...||. ..|.+++|.|||..+++|+.|+ .-+|||++++.++. +.+|..+|
T Consensus       296 lL-------------------------~QEGHs-~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~I  348 (459)
T KOG0272|consen  296 LL-------------------------LQEGHS-KGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKEI  348 (459)
T ss_pred             hH-------------------------hhcccc-cccceeEecCCCceeeccCccc-hhheeecccCcEEEEecccccce
Confidence            22                         246776 7999999999999999999996 99999999998865 55688999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEEEeCCCCCCCce
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP-EGRMILLAF-AGSLTLGSIHFASKPPSLDA  334 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~  334 (350)
                      .+++|+|+|..||+|+.|++++|||++..+. ..+..|..-|+.+.|+| .|.+|++++ |+...+|.-+-|....++.+
T Consensus       349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG  428 (459)
T KOG0272|consen  349 LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG  428 (459)
T ss_pred             eeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence            9999999999999999999999999998776 46779999999999999 788888886 66666666667777778999


Q ss_pred             eecccccceee
Q 018806          335 HLLPVDLPDIV  345 (350)
Q Consensus       335 ~~~~v~~~~~~  345 (350)
                      |...|-...+.
T Consensus       429 He~kV~s~Dis  439 (459)
T KOG0272|consen  429 HEGKVISLDIS  439 (459)
T ss_pred             CccceEEEEec
Confidence            99888766554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.8e-32  Score=219.69  Aligned_cols=330  Identities=40%  Similarity=0.701  Sum_probs=261.5

Q ss_pred             CCCCCCCCceeEEEEeceEeeccCCcchhhhhhhccccceeecccCCCcc-cccCCCCchhhhhhccccccccchhhhhh
Q 018806            1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSD-ELASSSPDRQESEQRGREEGEGLFSTLHG   79 (350)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   79 (350)
                      |-|+|+|+....|++|+|+++.-+.+|.+...+|+|+.+|+|.|+-|... ..+..++. +..+. ...+.+.+.+++.-
T Consensus         1 ~~s~P~~~r~pv~~ln~dll~~p~~~d~~~~E~v~Kr~~~vf~~vgf~~tl~e~~~~E~-E~~~~-~~~as~~~~a~l~~   78 (445)
T KOG2139|consen    1 MASFPHPGRVPVCELNRDLLTAPNLSDERAQETVGKRLGMVFSPVGFDSTLSELQENEG-ENGDK-ASGASKGLVATLQM   78 (445)
T ss_pred             CCCCCCCCccceEEecchhhcCCccchhhHHHHHHhhhheeecccccccchHHhhCccc-ccchh-hcccchHHHHHHHH
Confidence            78999999999999999999999999999999999999999999987665 22222222 22222 22345667777766


Q ss_pred             hhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeE
Q 018806           80 IISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS  159 (350)
Q Consensus        80 h~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  159 (350)
                      ..+.....+..+.+..+..+.++..++|++.-..+|++..|-.|++|+-.   ......+.......|++++|-|.+..-
T Consensus        79 a~~l~~~~Iaqf~~vt~ws~~dlr~~aWhqH~~~fava~nddvVriy~ks---st~pt~Lks~sQrnvtclawRPlsase  155 (445)
T KOG2139|consen   79 AVALSLKQIAQFTDVTLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKS---STCPTKLKSVSQRNVTCLAWRPLSASE  155 (445)
T ss_pred             hhhhhHHHhhchhhhhhhhhcceeeEeechhhhhhhhhccCcEEEEeccC---CCCCceecchhhcceeEEEeccCCcce
Confidence            66655667777788888889999999999987788889999999999964   355566655667889999999999899


Q ss_pred             EEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeee--ccCCCCCceeeEEECCCCCeEEEEEeCCCeE
Q 018806          160 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASASYESSSF  237 (350)
Q Consensus       160 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i  237 (350)
                      ++.+..+.|++|......+......+...             ...+.  ..+|  ..|++++|.+||..+++++.++..|
T Consensus       156 lavgCr~gIciW~~s~tln~~r~~~~~s~-------------~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~gsssi  220 (445)
T KOG2139|consen  156 LAVGCRAGICIWSDSRTLNANRNIRMMST-------------HHLQVLQDPGH--NPVTSMQWNEDGTILVTASFGSSSI  220 (445)
T ss_pred             eeeeecceeEEEEcCcccccccccccccc-------------cchhheeCCCC--ceeeEEEEcCCCCEEeecccCcceE
Confidence            99999999999998754433222111000             00111  2344  5899999999999999998877799


Q ss_pred             EEEeCCCCCceeee-ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeC-CCCceeccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          238 TIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTSEPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       238 ~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      .|||..++...++. ...+++.-+.|||||.+|+++.-|+..++|+. ++....++.-..+.|....|+|+|++|++++.
T Consensus       221 ~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             EEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence            99999999988877 45688999999999999999999999999954 44455666666679999999999999999999


Q ss_pred             CCeEEEEEEeCCCCCCCc------eeecccccceeecccCC
Q 018806          316 GSLTLGSIHFASKPPSLD------AHLLPVDLPDIVSLTGR  350 (350)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~g~  350 (350)
                      +...+|.+.+.++...+.      .|..+++++++...+|+
T Consensus       301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~  341 (445)
T KOG2139|consen  301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ  341 (445)
T ss_pred             CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc
Confidence            999999999998766444      88888888888877763

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.2e-32  Score=240.71  Aligned_cols=196  Identities=16%  Similarity=0.296  Sum_probs=170.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .+|..++|+|+.++|+++|.|+++++|.+.+  ..+.... .+|..+|+.+.|+|.|-++++++.|++.++|......  
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t--~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~--  526 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT--WSCLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK--  526 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeeccc--ceeEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecccCC--
Confidence            3599999999999999999999999999965  4554544 5999999999999998888888889999999988321  


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~  258 (350)
                                             ..+.+.+|. +.|.|+.|+|+..++++++.|. +|++||+.+|...+++ +|.++|.
T Consensus       527 -----------------------PlRifaghl-sDV~cv~FHPNs~Y~aTGSsD~-tVRlWDv~~G~~VRiF~GH~~~V~  581 (707)
T KOG0263|consen  527 -----------------------PLRIFAGHL-SDVDCVSFHPNSNYVATGSSDR-TVRLWDVSTGNSVRIFTGHKGPVT  581 (707)
T ss_pred             -----------------------chhhhcccc-cccceEEECCcccccccCCCCc-eEEEEEcCCCcEEEEecCCCCceE
Confidence                                   244567776 7999999999999999999995 9999999999887755 6889999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      +++|||+|++|++|+.|+.|++||+.+++. .++.+|.+.|.++.||.||..|++++ +.++.+|++..
T Consensus       582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999999999999887 67889999999999999999999887 55555555443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-31  Score=207.74  Aligned_cols=196  Identities=15%  Similarity=0.209  Sum_probs=166.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|..+..++||++.++++.|+++++||+..  ++....+ .+|...|.+++|++|.+++++++.|++|++|++. +....
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~--g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~  140 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLAT--GESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKY  140 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecC--CcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEE
Confidence            589999999999999999999999999964  5554544 6999999999999999999999999999999987 22211


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCC-CCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG  256 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~  256 (350)
                      .                         +..+. ...|.++.|+|+  ...|++++.| ++|++||+++.+... ..+|.+.
T Consensus       141 t-------------------------~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D-ktvKvWnl~~~~l~~~~~gh~~~  194 (315)
T KOG0279|consen  141 T-------------------------IHEDSHREWVSCVRFSPNESNPIIVSASWD-KTVKVWNLRNCQLRTTFIGHSGY  194 (315)
T ss_pred             E-------------------------EecCCCcCcEEEEEEcCCCCCcEEEEccCC-ceEEEEccCCcchhhcccccccc
Confidence            1                         11111 369999999998  6789999999 599999999988765 5568899


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ++.+++||||...++|+.||.+.+||++.++......+...|.+++|+|+.-+|+.+.+.++.||+..-.
T Consensus       195 v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  195 VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             EEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence            9999999999999999999999999999999988889999999999999998888887766666655443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.98  E-value=1.2e-30  Score=205.97  Aligned_cols=243  Identities=14%  Similarity=0.186  Sum_probs=199.3

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCcc------------------------CeeEEEEecCCCEEEEEECCCeEEEEEcc
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~~------------------------~V~~v~~sp~g~~la~~s~d~~i~iw~~~  129 (350)
                      ..+|+||.+.++...+.++...++...                        .|..++|+|.|+++|+|+.|+...||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            478999999999988888876666532                        58899999999999999999999999997


Q ss_pred             CCCCC---ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeee
Q 018806          130 DSEGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF  206 (350)
Q Consensus       130 ~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (350)
                      ..+..   .+.....+|.+.+.++.|-+| .+|++++.|.+..+||++.+..                         ...
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-------------------------~~~  181 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-------------------------TQV  181 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-------------------------EEE
Confidence            54222   333344689999999999987 8999999999999999995543                         455


Q ss_pred             ccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCC
Q 018806          207 LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  284 (350)
Q Consensus       207 ~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~  284 (350)
                      +.+|. +.|.+++++| +++.+++++-| +..++||++.+.+.+ +.+|...|.+++|.|+|.-+++|++|++.++||++
T Consensus       182 f~GH~-gDV~slsl~p~~~ntFvSg~cD-~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  182 FHGHT-GDVMSLSLSPSDGNTFVSGGCD-KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             ecCCc-ccEEEEecCCCCCCeEEecccc-cceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            77887 7999999999 99999999999 599999999998766 55688999999999999999999999999999999


Q ss_pred             CCceeccccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC--CCCCCCceeecccccceee
Q 018806          285 TWTSEPWSST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFA--SKPPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       285 ~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~  345 (350)
                      .........+   ..+|++++||..|++|++|. .+.....|+.-  .....+.+|...|....+.
T Consensus       260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s  324 (343)
T KOG0286|consen  260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGERVGVLAGHENRVSCLGVS  324 (343)
T ss_pred             CCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence            9877655444   45789999999999999874 22344444443  3334788999998776554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.98  E-value=1.6e-30  Score=217.24  Aligned_cols=219  Identities=21%  Similarity=0.374  Sum_probs=173.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +|++++|+.+|..||+|+.||.++||+..   +.....+ ..|.++|.+++|+..|.++++++.|+++.+||...+...+
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~---G~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKD---GNLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecC---chhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence            69999999999999999999999999975   5555555 5799999999999999999999999999999997554443


Q ss_pred             eeeccccc-------ccceecC-CCCCceE--------EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC
Q 018806          181 SVRSGAAS-------FLGALSR-GPGTRWT--------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       181 ~~~~~~~~-------~~~~~~~-~~~~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~  244 (350)
                      .+......       ....|+. +.++.+.        ...++.+|+ +.|.++.|+|.|..|++++.| ++++||+...
T Consensus       313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~-g~V~alk~n~tg~LLaS~SdD-~TlkiWs~~~  390 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH-GEVNALKWNPTGSLLASCSDD-GTLKIWSMGQ  390 (524)
T ss_pred             eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc-CceEEEEECCCCceEEEecCC-CeeEeeecCC
Confidence            33222111       1111222 2333333        234678887 799999999999999999999 7999999776


Q ss_pred             CCc-eeeeecCCCeEEEEEcCCC---------CEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEE
Q 018806          245 GLG-TPIRRGFGGLSILKWSPTG---------DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       245 ~~~-~~~~~~~~~v~~~~~sp~g---------~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      ... ..+..|...|+.+.|+|+|         ..+++++.|++|++||+..+.+ ..+..|..+|++++|+|+|+++++|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence            554 4577888999999999965         4689999999999999999988 4677999999999999999999999


Q ss_pred             ECCCeEEEEEEeCCCC
Q 018806          314 FAGSLTLGSIHFASKP  329 (350)
Q Consensus       314 ~~~~~~~~~~~~~~~~  329 (350)
                      +    ..+.+++|..+
T Consensus       471 s----~dg~V~iws~~  482 (524)
T KOG0273|consen  471 S----LDGCVHIWSTK  482 (524)
T ss_pred             C----CCCeeEecccc
Confidence            5    34444455443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=195.75  Aligned_cols=214  Identities=15%  Similarity=0.194  Sum_probs=169.1

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +...|+++.|..+|+++++|+.||+++|||+..  ......  ..|..+|+++..+|+-..|+++..+|.|++||+....
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS  157 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccC--cccchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence            345799999999999999999999999999964  222222  3678999999999997788888889999999998654


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-------eee
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-------TPI  250 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-------~~~  250 (350)
                      ....+...                         ....|.++...|||.+++.+... |++++|++-....       .++
T Consensus       158 c~~~liPe-------------------------~~~~i~sl~v~~dgsml~a~nnk-G~cyvW~l~~~~~~s~l~P~~k~  211 (311)
T KOG0315|consen  158 CTHELIPE-------------------------DDTSIQSLTVMPDGSMLAAANNK-GNCYVWRLLNHQTASELEPVHKF  211 (311)
T ss_pred             cccccCCC-------------------------CCcceeeEEEcCCCcEEEEecCC-ccEEEEEccCCCccccceEhhhe
Confidence            44332221                         23689999999999999998888 8999999987532       235


Q ss_pred             eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC-ce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCC
Q 018806          251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFAS  327 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~  327 (350)
                      ..|.+.+..+.+|||+++||+++.|.+++||+.++. +. ..+.+|..+++.++||.||+||++++ +...++|.+....
T Consensus       212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            568899999999999999999999999999999987 33 56778999999999999999999987 3333444333333


Q ss_pred             CCCCCceeeccccc
Q 018806          328 KPPSLDAHLLPVDL  341 (350)
Q Consensus       328 ~~~~~~~~~~~v~~  341 (350)
                      ......+|..+...
T Consensus       292 ~v~qy~gh~K~~vc  305 (311)
T KOG0315|consen  292 EVRQYQGHHKAAVC  305 (311)
T ss_pred             eeeecCCcccccEE
Confidence            33566777665443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-29  Score=196.68  Aligned_cols=194  Identities=14%  Similarity=0.270  Sum_probs=158.7

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC-CCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ..|.+++|++|.+.|++|+.|++|++|+.-   +.+...+... +.+.|.+++|+|+  ...++.++.|++|++||++..
T Consensus       106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~---g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~  182 (315)
T KOG0279|consen  106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTL---GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC  182 (315)
T ss_pred             CceEEEEecCCCceeecCCCcceeeeeeec---ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence            379999999999999999999999999985   4544555433 3789999999998  456777888999999999833


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG  256 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~  256 (350)
                      +                         +...+.+|. +.++.+++||||..+++++.| |.+.+||++.++......+...
T Consensus       183 ~-------------------------l~~~~~gh~-~~v~t~~vSpDGslcasGgkd-g~~~LwdL~~~k~lysl~a~~~  235 (315)
T KOG0279|consen  183 Q-------------------------LRTTFIGHS-GYVNTVTVSPDGSLCASGGKD-GEAMLWDLNEGKNLYSLEAFDI  235 (315)
T ss_pred             c-------------------------hhhcccccc-ccEEEEEECCCCCEEecCCCC-ceEEEEEccCCceeEeccCCCe
Confidence            2                         234467776 799999999999999999999 7999999999999888899999


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-c----cc-----CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W----SS-----TSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~----~~-----~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      |.+++|+|+.-+|+.+. +..|+|||++++.+.. +    .+     ......+++|++||+.|+.+. ++.+.+|.+.
T Consensus       236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            99999999987776654 4559999999987631 1    11     234567899999999999886 6666666654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=191.86  Aligned_cols=197  Identities=19%  Similarity=0.370  Sum_probs=164.6

Q ss_pred             eeEEEEecC-CCEEEEEECCCeEEEEEccC-CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQH-KHIVAFISGSTQVIVRDYED-SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~-g~~la~~s~d~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      |..++|+|- |..||+++.|+.|+||+... .+-.+...+..+|...|++++|+|.|+.|++++.|.++.||.-.     
T Consensus        17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-----   91 (312)
T KOG0645|consen   17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-----   91 (312)
T ss_pred             EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-----
Confidence            899999998 89999999999999999863 22333444545799999999999999988888889999999765     


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce----eeeecCC
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFG  255 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~----~~~~~~~  255 (350)
                                        ++.+.+..++.||. ..|.+++|+++|.+||+++.|+ .|.||.+......    .+..|..
T Consensus        92 ------------------~~efecv~~lEGHE-nEVK~Vaws~sG~~LATCSRDK-SVWiWe~deddEfec~aVL~~Htq  151 (312)
T KOG0645|consen   92 ------------------DGEFECVATLEGHE-NEVKCVAWSASGNYLATCSRDK-SVWIWEIDEDDEFECIAVLQEHTQ  151 (312)
T ss_pred             ------------------CCceeEEeeeeccc-cceeEEEEcCCCCEEEEeeCCC-eEEEEEecCCCcEEEEeeeccccc
Confidence                              44667888999997 7999999999999999999996 9999999865432    3557889


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc----eeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWT----SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      .|..+.|+|...+|++++.|++|++|+-..+.    ..++.+|...|++++|++.|..|+++++. ..+..|+
T Consensus       152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD-~tv~Iw~  223 (312)
T KOG0645|consen  152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD-GTVSIWR  223 (312)
T ss_pred             cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC-cceEeee
Confidence            99999999999999999999999999887433    25677899999999999999999877633 3444444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.4e-28  Score=208.46  Aligned_cols=267  Identities=17%  Similarity=0.286  Sum_probs=199.6

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCc-c------------------------CeeEEEEecCCCEEEEEECCCeEEEEEc
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPE-V------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDY  128 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~-~------------------------~V~~v~~sp~g~~la~~s~d~~i~iw~~  128 (350)
                      +.-+.||...+....+.|..+.-+.. .                        -|+|+.|+|||.++|+++.||++.+||=
T Consensus       140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG  219 (603)
T KOG0318|consen  140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG  219 (603)
T ss_pred             cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence            46678999888888888876543321 1                        4999999999999999999999999997


Q ss_pred             cCCCCCceeEec--CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccce----------ecCC
Q 018806          129 EDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA----------LSRG  196 (350)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~  196 (350)
                        .++..+..+.  .+|.+.|.+++|+||+.++++++.|.+++|||+........+..+.....+.          +..+
T Consensus       220 --ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS  297 (603)
T KOG0318|consen  220 --KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS  297 (603)
T ss_pred             --CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence              4466666664  2699999999999999999999999999999999665555444332211111          1222


Q ss_pred             CCCceE--------EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-----------------------
Q 018806          197 PGTRWT--------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----------------------  245 (350)
Q Consensus       197 ~~~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-----------------------  245 (350)
                      -++.+.        ..+.+.+|. ..|++++.+|++++|++++.| |.|.-||..++                       
T Consensus       298 l~G~in~ln~~d~~~~~~i~GHn-K~ITaLtv~~d~~~i~SgsyD-G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~  375 (603)
T KOG0318|consen  298 LSGTINYLNPSDPSVLKVISGHN-KSITALTVSPDGKTIYSGSYD-GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG  375 (603)
T ss_pred             cCcEEEEecccCCChhheecccc-cceeEEEEcCCCCEEEeeccC-ceEEEEecCCccccccccccccceEEEEeecCCC
Confidence            222222        445678886 799999999999999999999 79999987655                       


Q ss_pred             --------------------------------------------------------------------------------
Q 018806          246 --------------------------------------------------------------------------------  245 (350)
Q Consensus       246 --------------------------------------------------------------------------------  245 (350)
                                                                                                      
T Consensus       376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~  455 (603)
T KOG0318|consen  376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG  455 (603)
T ss_pred             cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence                                                                                            


Q ss_pred             -----------------------CceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEE
Q 018806          246 -----------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTG  300 (350)
Q Consensus       246 -----------------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~  300 (350)
                                             +......|.+++++++||||+.+||++...+.+-+||+.+.+.  ..+.-|...|.+
T Consensus       456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~  535 (603)
T KOG0318|consen  456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC  535 (603)
T ss_pred             CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence                                   0112334667889999999999999999999999999998877  345579999999


Q ss_pred             EEEcCCCCEEEEEE-CCCeEEEEEEeCCCCC-CCceeeccccccee
Q 018806          301 ATWDPEGRMILLAF-AGSLTLGSIHFASKPP-SLDAHLLPVDLPDI  344 (350)
Q Consensus       301 ~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  344 (350)
                      ++|+|+.+++|+|+ |..+.+|.++-..+.. -..+|...|....+
T Consensus       536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w  581 (603)
T KOG0318|consen  536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW  581 (603)
T ss_pred             EEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence            99999999999987 5555555555443322 33467666655444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=4.8e-30  Score=210.93  Aligned_cols=219  Identities=18%  Similarity=0.277  Sum_probs=183.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|..|.|.|+|+.|++|+..|...+|+...   -....+...|+.+|+++.|+++|..++++..+|.|++|+.... . 
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-n-  171 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-N-  171 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-h-
Confidence            3799999999999999999999999999632   2223344579999999999999999998888999999998722 1 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                                              +..+..|+...|++++|+|+...+++++.| |+|+|||....+... +.+|.-.|.
T Consensus       172 ------------------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdD-g~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  172 ------------------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDD-GTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             ------------------------hHHhhHhhhhhhheeccCCCCceeEEecCC-CeEEEEeccCCchhheeccCCCCcc
Confidence                                    233556666799999999999999999999 699999998876654 566777899


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCceee
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHL  336 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  336 (350)
                      +++|+|....||+++.|..|++||.+++.+ ..+..|...|..+.|+|++++|++++ |....+++++.-.....+.+|.
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK  306 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence            999999999999999999999999999998 56789999999999999999999988 6667777777444455777888


Q ss_pred             cccccceeeccc
Q 018806          337 LPVDLPDIVSLT  348 (350)
Q Consensus       337 ~~v~~~~~~~~~  348 (350)
                      ..|....++++.
T Consensus       307 kdv~~~~WhP~~  318 (464)
T KOG0284|consen  307 KDVTSLTWHPLN  318 (464)
T ss_pred             hhheeecccccc
Confidence            888877776653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1e-28  Score=218.63  Aligned_cols=216  Identities=16%  Similarity=0.250  Sum_probs=178.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCC----------------------------CCceeEecCCCCCCeeEEEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----------------------------GKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~----------------------------~~~~~~~~~~~~~~v~~~~~  152 (350)
                      .|+|..|++|+.+||.|-.|-.|++|.+....                            .........+|.++|..++|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            69999999999999999999999999886210                            01112223589999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe
Q 018806          153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       153 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  232 (350)
                      +|+.+.|++++.|+++|+|.+.                         .|.+.-.++||. .+|+.+.|+|.|-++|+++.
T Consensus       460 sPd~rfLlScSED~svRLWsl~-------------------------t~s~~V~y~GH~-~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  460 SPDRRFLLSCSEDSSVRLWSLD-------------------------TWSCLVIYKGHL-APVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             cccccceeeccCCcceeeeecc-------------------------cceeEEEecCCC-cceeeEEecCCceEEEecCC
Confidence            9998888888889999999998                         444556678886 79999999999999999999


Q ss_pred             CCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEE
Q 018806          233 ESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l  310 (350)
                      | ++-++|........++ .+|...|.|+.|+|++.++++|+.|++|++||+.+|... .+.+|.++|++++|||+|++|
T Consensus       514 D-~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  514 D-QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             C-ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence            9 6999999988777664 467899999999999999999999999999999999885 466999999999999999999


Q ss_pred             EEEECCCeEEEEEEeCC--CCCCCceeeccccccee
Q 018806          311 LLAFAGSLTLGSIHFAS--KPPSLDAHLLPVDLPDI  344 (350)
Q Consensus       311 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~  344 (350)
                      ++|+.. ..+..|++..  ....+.+|...|....+
T Consensus       593 aSg~ed-~~I~iWDl~~~~~v~~l~~Ht~ti~SlsF  627 (707)
T KOG0263|consen  593 ASGDED-GLIKIWDLANGSLVKQLKGHTGTIYSLSF  627 (707)
T ss_pred             eecccC-CcEEEEEcCCCcchhhhhcccCceeEEEE
Confidence            988622 2344455544  33477788777666555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=210.85  Aligned_cols=199  Identities=18%  Similarity=0.307  Sum_probs=170.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..++++++||||++||+|+.||+|+|||..  .+-+..++ ..|...|+.+.|+..|+.+++++-||+|+.||+.     
T Consensus       351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~--SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk-----  422 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQ--SGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK-----  422 (893)
T ss_pred             cceeeEEECCCCcEEEeccCCCcEEEEecc--CceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeec-----
Confidence            369999999999999999999999999984  36676666 4899999999999999999999999999999998     


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                                          +++..+++....+....+++..|.|..+.+|+.|.=.|.+|++++|+... +.+|.++|.
T Consensus       423 --------------------RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs  482 (893)
T KOG0291|consen  423 --------------------RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS  482 (893)
T ss_pred             --------------------ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce
Confidence                                44456667776666788999999999999999886679999999999876 557899999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                      +++|+|+|..|++++.|++|++||+-.... .....+...+..++|+|+|+.|+++. ++.+.+|+....
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence            999999999999999999999999965522 33344566789999999999999997 777777776544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=1.3e-28  Score=202.56  Aligned_cols=217  Identities=16%  Similarity=0.276  Sum_probs=173.0

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..+|+++.|+++|.++++|+.+|.|++|+.+   ...+..+...|...|++++|+|++..+++++.|++|+|||......
T Consensus       138 Ds~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn---mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke  214 (464)
T KOG0284|consen  138 DSPVRTMKWSHNGTWMISGDKGGMIKYWQPN---MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE  214 (464)
T ss_pred             cccceeEEEccCCCEEEEcCCCceEEecccc---hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch
Confidence            3479999999999999999999999999985   3333444334668999999999999999999999999999985443


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v  257 (350)
                      .                         ..+.+|. -.|.++.|+|.-..|++++.|+ .|++||.+++.+.. +..|+..|
T Consensus       215 e-------------------------~vL~GHg-wdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntV  267 (464)
T KOG0284|consen  215 E-------------------------RVLRGHG-WDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTV  267 (464)
T ss_pred             h-------------------------heeccCC-CCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceE
Confidence            2                         2356775 7999999999999999999996 99999999998875 66788999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC-CC-CCC-c
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KP-PSL-D  333 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~-~~-~~~-~  333 (350)
                      ..+.|+|++++|++++.|..++++|+++.+. ..+.+|...++++.|+|-..-|++.++.+..+.-|.+.. .+ ..+ .
T Consensus       268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~  347 (464)
T KOG0284|consen  268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP  347 (464)
T ss_pred             EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc
Confidence            9999999999999999999999999996655 567789999999999997776666554444444444442 22 122 3


Q ss_pred             eeecccccceee
Q 018806          334 AHLLPVDLPDIV  345 (350)
Q Consensus       334 ~~~~~v~~~~~~  345 (350)
                      +|...|-....+
T Consensus       348 AHd~~iwsl~~h  359 (464)
T KOG0284|consen  348 AHDGEIWSLAYH  359 (464)
T ss_pred             ccccceeeeecc
Confidence            666555444443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.1e-28  Score=195.92  Aligned_cols=215  Identities=19%  Similarity=0.260  Sum_probs=180.7

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      |.+++|+..|++||+++.|-.+++||++.. .++.. ...+|...|.+++|-|.|.++++++.|.+|+.|++.++     
T Consensus       153 v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~k-s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-----  225 (406)
T KOG0295|consen  153 VFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIK-SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-----  225 (406)
T ss_pred             eeEEEEecCccEEEecCCccchhheeHHHH-HHHHH-HhcCcccceeeEEEEecCCeeeecccccceeEEecccc-----
Confidence            889999999999999999999999999632 23333 33589999999999999999999999999999999843     


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  260 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~  260 (350)
                                          .++.++.+|. ..|..++.+.||..+++++.|. ++++|-+.++++.. +..|..+|.++
T Consensus       226 --------------------~cv~t~~~h~-ewvr~v~v~~DGti~As~s~dq-tl~vW~~~t~~~k~~lR~hEh~vEci  283 (406)
T KOG0295|consen  226 --------------------YCVKTFPGHS-EWVRMVRVNQDGTIIASCSNDQ-TLRVWVVATKQCKAELREHEHPVECI  283 (406)
T ss_pred             --------------------eeEEeccCch-HhEEEEEecCCeeEEEecCCCc-eEEEEEeccchhhhhhhccccceEEE
Confidence                                3467788887 6999999999999999999995 99999999997754 66788999999


Q ss_pred             EEcCC---------------CCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          261 KWSPT---------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       261 ~~sp~---------------g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      +|.|.               ++++++++.|++|++||+.++.+ .++.+|..+|..++|+|.|+||+++. ++...+|++
T Consensus       284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence            99763               25889999999999999999998 67889999999999999999999887 555666666


Q ss_pred             EeCCCCCCCceeecccccceee
Q 018806          324 HFASKPPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       324 ~~~~~~~~~~~~~~~v~~~~~~  345 (350)
                      +...+...+.+|..-+....+.
T Consensus       364 ~~~~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  364 KNLQCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             ccceeeeccCCCcceeEEEecC
Confidence            6655566777777666555443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1.5e-27  Score=189.05  Aligned_cols=208  Identities=13%  Similarity=0.197  Sum_probs=173.1

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEe
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR  153 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~s  153 (350)
                      +..+.||.++                  |+.+.|+|+|.++|+|+.|..|.+|++.. ..+..-.+ .+|.+.|..+.|.
T Consensus        40 ~m~l~gh~ge------------------I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~l-kgHsgAVM~l~~~   99 (338)
T KOG0265|consen   40 IMLLPGHKGE------------------IYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVL-KGHSGAVMELHGM   99 (338)
T ss_pred             hhhcCCCcce------------------EEEEEECCCCCeEeecCCcceEEEEeccc-cccceeee-ccccceeEeeeec
Confidence            5667788777                  78889999999999999999999999753 23333333 5899999999999


Q ss_pred             eCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC
Q 018806          154 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE  233 (350)
Q Consensus       154 p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  233 (350)
                      +|++.+++++.|++++.||.++++...                         .+++|. .-|.++.-+.-|..+++.+.|
T Consensus       100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r-------------------------k~k~h~-~~vNs~~p~rrg~~lv~Sgsd  153 (338)
T KOG0265|consen  100 RDGSHILSCGTDKTVRGWDAETGKRIR-------------------------KHKGHT-SFVNSLDPSRRGPQLVCSGSD  153 (338)
T ss_pred             cCCCEEEEecCCceEEEEecccceeee-------------------------hhcccc-ceeeecCccccCCeEEEecCC
Confidence            999999999999999999999766543                         356665 577777755567777666666


Q ss_pred             CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEE
Q 018806          234 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       234 ~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~  312 (350)
                      +|++++||+++.........+..++++.|..++..+.+|+-|+.|++||++.++. ..+.+|..+|+.+..+|+|.++.+
T Consensus       154 D~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls  233 (338)
T KOG0265|consen  154 DGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS  233 (338)
T ss_pred             CceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence            6899999999998888888889999999999999999999999999999998887 567899999999999999999997


Q ss_pred             EE-CCCeEEEEEEeCC
Q 018806          313 AF-AGSLTLGSIHFAS  327 (350)
Q Consensus       313 ~~-~~~~~~~~~~~~~  327 (350)
                      -+ +....+|.++-+.
T Consensus       234 nsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  234 NSMDNTVRVWDVRPFA  249 (338)
T ss_pred             ccccceEEEEEecccC
Confidence            65 6656666666553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=2.6e-27  Score=187.17  Aligned_cols=182  Identities=19%  Similarity=0.294  Sum_probs=160.9

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +.|+.|-+|+ +|+++|.|.+..+||++.  ++....+ .+|.+.|.+++++| +++.+++++.|+..++||++.+.   
T Consensus       148 lScC~f~dD~-~ilT~SGD~TCalWDie~--g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~---  220 (343)
T KOG0286|consen  148 LSCCRFLDDN-HILTGSGDMTCALWDIET--GQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ---  220 (343)
T ss_pred             eEEEEEcCCC-ceEecCCCceEEEEEccc--ceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---
Confidence            8888888765 577999999999999964  6665655 69999999999999 88899999999999999999554   


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC---CCe
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGL  257 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~---~~v  257 (350)
                                            +.+++.+|. ..|.++.|.|+|.-+++++.| +++++||++..+...+..+.   .+|
T Consensus       221 ----------------------c~qtF~ghe-sDINsv~ffP~G~afatGSDD-~tcRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  221 ----------------------CVQTFEGHE-SDINSVRFFPSGDAFATGSDD-ATCRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             ----------------------eeEeecccc-cccceEEEccCCCeeeecCCC-ceeEEEeecCCcEEeeeccCcccCCc
Confidence                                  356688886 899999999999999999999 79999999998887777654   679


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .+++||..|++|++|..|.++.+||.-.++. ..+.+|++.|+++..+|||.-|++|+
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence            9999999999999999999999999877776 56789999999999999999999885

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.2e-27  Score=212.00  Aligned_cols=213  Identities=23%  Similarity=0.363  Sum_probs=173.6

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|.++.|+++|+.+++++.++.+++|+...........+ .+|...|..++|+|+++.+++++.|++++|||+.... 
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-  236 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-  236 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence            35799999999999999999999999999953221133333 5799999999999999888888889999999995332 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v  257 (350)
                                             .+.+++.+|. ..|++++|+|+|+.+++++.| ++|++||++++++.. +..|...|
T Consensus       237 -----------------------~~~~~l~gH~-~~v~~~~f~p~g~~i~Sgs~D-~tvriWd~~~~~~~~~l~~hs~~i  291 (456)
T KOG0266|consen  237 -----------------------RNLKTLKGHS-TYVTSVAFSPDGNLLVSGSDD-GTVRIWDVRTGECVRKLKGHSDGI  291 (456)
T ss_pred             -----------------------eEEEEecCCC-CceEEEEecCCCCEEEEecCC-CcEEEEeccCCeEEEeeeccCCce
Confidence                                   2466788887 799999999999999999999 699999999988765 55688999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce---eccccCCC--CeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCC
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPS  331 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~--~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~  331 (350)
                      .+++|+++|++|++++.|+.|+|||+.++..   ..+..+..  +++.+.|+|++++|+++. ++...+|++........
T Consensus       292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence            9999999999999999999999999999993   34444444  599999999999999988 44566666655444455


Q ss_pred             Cceeecc
Q 018806          332 LDAHLLP  338 (350)
Q Consensus       332 ~~~~~~~  338 (350)
                      +.+|...
T Consensus       372 ~~~~~~~  378 (456)
T KOG0266|consen  372 YTGHSNL  378 (456)
T ss_pred             ecccCCc
Confidence            5566553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.3e-26  Score=208.91  Aligned_cols=217  Identities=21%  Similarity=0.354  Sum_probs=171.3

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|.+++|+|+++++++++.|++++|||+. ..+.....+ .+|...|++++|+|+|+.+++++.|++|+|||++... 
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-  279 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-  279 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-
Confidence            4579999999999999999999999999993 234555555 5999999999999999788888889999999999422 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc--e-eeeecCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--T-PIRRGFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~--~-~~~~~~~  255 (350)
                                              +...+.+|. ..|++++|+++++.|++++.| |.|++||+.++..  . .+..+..
T Consensus       280 ------------------------~~~~l~~hs-~~is~~~f~~d~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~  333 (456)
T KOG0266|consen  280 ------------------------CVRKLKGHS-DGISGLAFSPDGNLLVSASYD-GTIRVWDLETGSKLCLKLLSGAEN  333 (456)
T ss_pred             ------------------------EEEeeeccC-CceEEEEECCCCCEEEEcCCC-ccEEEEECCCCceeeeecccCCCC
Confidence                                    356688887 699999999999999999988 7999999999983  2 3334433


Q ss_pred             --CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCC---CeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC-
Q 018806          256 --GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSG---FVTGATWDPEGRMILLAFAGSLTLGSIHFASK-  328 (350)
Q Consensus       256 --~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~---~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~-  328 (350)
                        .+++++|+|++++++++..|+.+++||+..++. ..+..|..   .+.+...++.|+++++++.. ..+..|+.... 
T Consensus       334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d-~~v~~~~~~s~~  412 (456)
T KOG0266|consen  334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED-GSVYVWDSSSGG  412 (456)
T ss_pred             CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC-ceEEEEeCCccc
Confidence              589999999999999999999999999998877 44555554   34566678899999988633 34555555433 


Q ss_pred             -CCCCcee-ecccccceee
Q 018806          329 -PPSLDAH-LLPVDLPDIV  345 (350)
Q Consensus       329 -~~~~~~~-~~~v~~~~~~  345 (350)
                       ...+.+| ..++....++
T Consensus       413 ~~~~l~~h~~~~~~~~~~~  431 (456)
T KOG0266|consen  413 ILQRLEGHSKAAVSDLSSH  431 (456)
T ss_pred             hhhhhcCCCCCceeccccC
Confidence             3477778 5555544443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=2.4e-27  Score=192.19  Aligned_cols=207  Identities=14%  Similarity=0.183  Sum_probs=173.8

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|.|+++.|-.+++++|+.|++++|||+.+  ++....+ .+|...|..+++|+--.++++++.|+.|+.||++..+.  
T Consensus       153 WVr~vavdP~n~wf~tgs~DrtikIwDlat--g~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv--  227 (460)
T KOG0285|consen  153 WVRSVAVDPGNEWFATGSADRTIKIWDLAT--GQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV--  227 (460)
T ss_pred             eEEEEeeCCCceeEEecCCCceeEEEEccc--CeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhhhh--
Confidence            599999999999999999999999999964  6666666 48999999999999888999999999999999994433  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  259 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~  259 (350)
                                             ++.+.||- +.|.+++.+|.-..|++++.|. ++++||+++..... +.+|..+|.+
T Consensus       228 -----------------------IR~YhGHl-S~V~~L~lhPTldvl~t~grDs-t~RvWDiRtr~~V~~l~GH~~~V~~  282 (460)
T KOG0285|consen  228 -----------------------IRHYHGHL-SGVYCLDLHPTLDVLVTGGRDS-TIRVWDIRTRASVHVLSGHTNPVAS  282 (460)
T ss_pred             -----------------------HHHhcccc-ceeEEEeccccceeEEecCCcc-eEEEeeecccceEEEecCCCCccee
Confidence                                   44467776 7999999999999999999996 99999999987765 5568999999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC--CCCceee
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHL  336 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~  336 (350)
                      +.+.|....+++|+.|++|++||++.++. ..+..|...+.+++.+|....+++++.+.  +..|++....  ..+.+|.
T Consensus       283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsgh~  360 (460)
T KOG0285|consen  283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSGHN  360 (460)
T ss_pred             EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccccc
Confidence            99999888999999999999999999987 56788999999999999988888776443  4455554432  2455555


Q ss_pred             ccc
Q 018806          337 LPV  339 (350)
Q Consensus       337 ~~v  339 (350)
                      .-+
T Consensus       361 ~ii  363 (460)
T KOG0285|consen  361 AII  363 (460)
T ss_pred             cee
Confidence            443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2.4e-27  Score=199.06  Aligned_cols=224  Identities=15%  Similarity=0.202  Sum_probs=176.5

Q ss_pred             cccchhhhhhhhhhccccccCCCCcCCCCccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCee
Q 018806           70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVK  148 (350)
Q Consensus        70 ~~~~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~  148 (350)
                      ++.++.++.||...                  |+++.|.| .+++|++++.|+.|+||++-. .+.++..+ .+|..+|.
T Consensus       203 Pkk~~~~~~gH~kg------------------vsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf-~gH~k~Vr  262 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKG------------------VSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTF-KGHRKPVR  262 (503)
T ss_pred             cHhheeeccCCccc------------------cchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhh-hcchhhhh
Confidence            55566777777666                  77788888 889999999999999999964 45555544 69999999


Q ss_pred             EEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccc------ccccc---eecCCCCCceEEeeec--------cCCC
Q 018806          149 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA------ASFLG---ALSRGPGTRWTLVDFL--------RSQN  211 (350)
Q Consensus       149 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~--------~~~~  211 (350)
                      +++|+++|..+++++.|+.+++||++++.....+..+.      +.+..   -++.+.++++..|+.-        ..| 
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-  341 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-  341 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-
Confidence            99999999999999999999999999888777665542      22322   2556667777777642        334 


Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc--------------------------------------------
Q 018806          212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--------------------------------------------  247 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~--------------------------------------------  247 (350)
                      -+.|..+.|-++|+++++++.| ++++||+.+.+..                                            
T Consensus       342 Lg~i~~i~F~~~g~rFissSDd-ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~  420 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDD-KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL  420 (503)
T ss_pred             hhheeeeEEccCCceEeeeccC-ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence            4789999999999999999999 5999999876510                                            


Q ss_pred             ---eeeeec--CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          248 ---TPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       248 ---~~~~~~--~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                         ..+.+|  .+.-..+.|||||++|++|+.||.+.+||.++-+. ..+..|..++..+.|+|.....+++++
T Consensus       421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~  494 (503)
T KOG0282|consen  421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG  494 (503)
T ss_pred             CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence               011122  13456799999999999999999999999999887 567889999999999998776655553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.95  E-value=5.6e-26  Score=175.83  Aligned_cols=224  Identities=14%  Similarity=0.244  Sum_probs=170.6

Q ss_pred             hhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC
Q 018806           76 TLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN  155 (350)
Q Consensus        76 ~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  155 (350)
                      ..+.+++.-++.+-+|+       ..|..+.+.|+++.||+++. ..|++||++..+...+..+ .+|...|+++.|.-+
T Consensus        24 fWqa~tG~C~rTiqh~d-------sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~d   94 (311)
T KOG0315|consen   24 FWQALTGICSRTIQHPD-------SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCD   94 (311)
T ss_pred             eeehhcCeEEEEEecCc-------cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEEEeec
Confidence            34445555555555554       34999999999999998765 4699999987555444444 689999999999999


Q ss_pred             CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC
Q 018806          156 GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS  235 (350)
Q Consensus       156 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g  235 (350)
                      |+.+++++.||+++|||++.......                          ..+ ..+|+++..+|+...|+++..+ |
T Consensus        95 grWMyTgseDgt~kIWdlR~~~~qR~--------------------------~~~-~spVn~vvlhpnQteLis~dqs-g  146 (311)
T KOG0315|consen   95 GRWMYTGSEDGTVKIWDLRSLSCQRN--------------------------YQH-NSPVNTVVLHPNQTELISGDQS-G  146 (311)
T ss_pred             CeEEEecCCCceEEEEeccCcccchh--------------------------ccC-CCCcceEEecCCcceEEeecCC-C
Confidence            99999999999999999995333222                          222 2799999999999999999988 7


Q ss_pred             eEEEEeCCCCCcee--eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-------eccccCCCCeEEEEEcCC
Q 018806          236 SFTIWDVAQGLGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPE  306 (350)
Q Consensus       236 ~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~v~~~~~s~~  306 (350)
                      .|++||+....+..  +.+....+.++...|||+.++.+...|..++|++-+...       .++..|.+.+..+.+|||
T Consensus       147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd  226 (311)
T KOG0315|consen  147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD  226 (311)
T ss_pred             cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence            99999999876543  334457899999999999999999999999999976543       346689999999999999


Q ss_pred             CCEEEEEE-CCCeEEEEEEeC-CCCCCCceee
Q 018806          307 GRMILLAF-AGSLTLGSIHFA-SKPPSLDAHL  336 (350)
Q Consensus       307 g~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~  336 (350)
                      +++|++++ ++..++|..+-. .....+.+|+
T Consensus       227 ~k~lat~ssdktv~iwn~~~~~kle~~l~gh~  258 (311)
T KOG0315|consen  227 VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ  258 (311)
T ss_pred             CcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence            99999887 444444444322 1122445554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.1e-25  Score=188.62  Aligned_cols=198  Identities=21%  Similarity=0.391  Sum_probs=162.0

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCC--------------------------------------CceeEec
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG--------------------------------------KDACILT  140 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~--------------------------------------~~~~~~~  140 (350)
                      ..+|.++.|+.+|++|++++.|+++.+||....+.                                      ..+...+
T Consensus       276 kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~  355 (524)
T KOG0273|consen  276 KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTF  355 (524)
T ss_pred             CCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceee
Confidence            45899999999999999999999999999832110                                      0111223


Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      .+|.+.|.++.|+|.|..|++++.|++++||.......                         ...+..|. ..|..+.|
T Consensus       356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-------------------------~~~l~~Hs-kei~t~~w  409 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-------------------------VHDLQAHS-KEIYTIKW  409 (524)
T ss_pred             ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc-------------------------hhhhhhhc-cceeeEee
Confidence            47889999999999988888888899999999773332                         34467776 68999999


Q ss_pred             CCCC---------CeEEEEEeCCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          221 GPDG---------RYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       221 sp~g---------~~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      +|.|         ..|++++.| ++|++||+..+.+... ..|..+|++++|+|+|+++|+|+.||.|++|+.++++..+
T Consensus       410 sp~g~v~~n~~~~~~l~sas~d-stV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  410 SPTGPVTSNPNMNLMLASASFD-STVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             cCCCCccCCCcCCceEEEeecC-CeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence            9965         468899999 4999999999988764 4899999999999999999999999999999999999977


Q ss_pred             cccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          291 WSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       291 ~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      .....+.|..++|+.+|..|..+. ++...+..+
T Consensus       489 s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  489 SYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            777778899999999999988765 554444443

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.1e-24  Score=195.81  Aligned_cols=202  Identities=15%  Similarity=0.253  Sum_probs=152.1

Q ss_pred             ccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCC-----CceeEecCCCCCCeeEEEEeeCC-CeEEEEecCCcEEEE
Q 018806           99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEG-----KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIW  171 (350)
Q Consensus        99 ~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iw  171 (350)
                      ...|++++|+| ++++||+|+.|++|++|++.....     ..... ..+|...|.+++|+|++ ..+++++.|++|+||
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW  153 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW  153 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence            45699999999 889999999999999999964211     12233 35899999999999986 467777779999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-e
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I  250 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~  250 (350)
                      |+.....                         ...+.+|. ..|.+++|+|+|+.|++++.| |+|++||+++++... +
T Consensus       154 Dl~tg~~-------------------------~~~l~~h~-~~V~sla~spdG~lLatgs~D-g~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        154 DVERGKA-------------------------VEVIKCHS-DQITSLEWNLDGSLLCTTSKD-KKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             ECCCCeE-------------------------EEEEcCCC-CceEEEEEECCCCEEEEecCC-CEEEEEECCCCcEEEEE
Confidence            9984322                         33456665 689999999999999999999 699999999987654 3


Q ss_pred             eecCCC-eEEEEEcCCCCEEEEEe----cCCeEEEEeCCCCce-eccc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          251 RRGFGG-LSILKWSPTGDYFFAAK----FDGTFYLWETNTWTS-EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       251 ~~~~~~-v~~~~~sp~g~~l~~~~----~d~~v~iwd~~~~~~-~~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      ..|.+. ...+.|.+++..+++++    .|+.|++||+++... ....  .....+....|++++++|++++.++..+..
T Consensus       207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri  286 (493)
T PTZ00421        207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC  286 (493)
T ss_pred             ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence            345443 45788999888777654    478999999987653 2221  233456667899999999988754555666


Q ss_pred             EEeCCC
Q 018806          323 IHFASK  328 (350)
Q Consensus       323 ~~~~~~  328 (350)
                      |++...
T Consensus       287 wdl~~~  292 (493)
T PTZ00421        287 FELMNE  292 (493)
T ss_pred             EEeeCC
Confidence            665543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4e-24  Score=167.49  Aligned_cols=194  Identities=18%  Similarity=0.309  Sum_probs=158.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++|+|.|++||+||.|.++.||.-...+.++...+ .+|...|.+++|+++|++|++++.|+.|-||.+..     
T Consensus        63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-----  136 (312)
T KOG0645|consen   63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-----  136 (312)
T ss_pred             eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-----
Confidence            499999999999999999999999999865555665555 59999999999999999999999999999999873     


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC---c-eeeeecCCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL---G-TPIRRGFGG  256 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~---~-~~~~~~~~~  256 (350)
                                       ++.+.+...++.|. ..|..+.|+|....|++++.|+ +|++|+-..+.   + ..+.+|...
T Consensus       137 -----------------ddEfec~aVL~~Ht-qDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~~T  197 (312)
T KOG0645|consen  137 -----------------DDEFECIAVLQEHT-QDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHENT  197 (312)
T ss_pred             -----------------CCcEEEEeeecccc-ccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCccce
Confidence                             23566778899998 6999999999999999999996 99999877332   2 345567789


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      |.+++|++.|..|++++.|++|+||...+.   -...|...++.++|. + ..|++++ ++.+.++.-.
T Consensus       198 VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  198 VWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKES  261 (312)
T ss_pred             EEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-c-cceEeccCCCEEEEEEec
Confidence            999999999999999999999999986532   112456789999999 3 4566655 4445555444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=2e-25  Score=172.87  Aligned_cols=214  Identities=17%  Similarity=0.161  Sum_probs=173.1

Q ss_pred             cccchhhhhhhhhhccccccCCCCcCC-------------------CC----ccCeeEEEEecCCCEEEEEECCCeEEEE
Q 018806           70 GEGLFSTLHGIISHSIKPLLHPDHVHL-------------------LP----EVDLQGVSWHQHKHIVAFISGSTQVIVR  126 (350)
Q Consensus        70 ~~~~~~~~~gh~~~~~~~~~~p~~~~~-------------------~~----~~~V~~v~~sp~g~~la~~s~d~~i~iw  126 (350)
                      +..++.++.||.+.++...+.....+-                   ++    ..-|.+++|+.|.++|++|+.++.++|+
T Consensus        48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvf  127 (334)
T KOG0278|consen   48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVF  127 (334)
T ss_pred             CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhh
Confidence            466889999999888755443321111                   11    1148999999999999999999999999


Q ss_pred             EccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeee
Q 018806          127 DYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF  206 (350)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (350)
                      |++...  ....-..+|.+.|..+-|....+.+++++.|++||+||.+++...+.+..                      
T Consensus       128 dln~p~--App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------------  183 (334)
T KOG0278|consen  128 DLNRPK--APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF----------------------  183 (334)
T ss_pred             hccCCC--CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----------------------
Confidence            997532  22333358999999999998878999998889999999997665544333                      


Q ss_pred             ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 018806          207 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  286 (350)
Q Consensus       207 ~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~  286 (350)
                           ...|+++..+++|++|.++..  +.|.+||..+-....-..-...|.+..++|+...+++|++|..++.||..++
T Consensus       184 -----~s~VtSlEvs~dG~ilTia~g--ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg  256 (334)
T KOG0278|consen  184 -----NSPVTSLEVSQDGRILTIAYG--SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG  256 (334)
T ss_pred             -----CCCCcceeeccCCCEEEEecC--ceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC
Confidence                 258999999999998877644  4899999998877776667788999999999999999999999999999999


Q ss_pred             ceecc--ccCCCCeEEEEEcCCCCEEEEEE
Q 018806          287 TSEPW--SSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       287 ~~~~~--~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +....  .+|.++|.++.|+|+|...++|+
T Consensus       257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGS  286 (334)
T KOG0278|consen  257 EEIGSYNKGHFGPVHCVRFSPDGELYASGS  286 (334)
T ss_pred             ceeeecccCCCCceEEEEECCCCceeeccC
Confidence            88544  68999999999999999888775

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=2.2e-24  Score=175.49  Aligned_cols=245  Identities=18%  Similarity=0.238  Sum_probs=175.9

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCcc------------------------CeeEEEEecCCCEEEEEECCCeEEEEEc
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDY  128 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~------------------------~V~~v~~sp~g~~la~~s~d~~i~iw~~  128 (350)
                      -...+.+|.+.++....+|.......+.                        .|+++.||.+|.+||+|..+|.|+||..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            3567889999999999999544333322                        6999999999999999999999999999


Q ss_pred             cCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccce----------ecCCCC
Q 018806          129 EDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA----------LSRGPG  198 (350)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~  198 (350)
                      .+  +.....+. .....|.-+.|+|.+..+++++.||.+-+|.+..+ ...++..+...+...          +....+
T Consensus       136 st--g~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  136 ST--GGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             cc--CceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecC
Confidence            65  44444443 34567888999999777777777999999999854 333333333222221          222334


Q ss_pred             CceEEeeeccCCC----------------------------------------------------------C---Cceee
Q 018806          199 TRWTLVDFLRSQN----------------------------------------------------------G---EQITA  217 (350)
Q Consensus       199 ~~~~~~~~~~~~~----------------------------------------------------------~---~~v~~  217 (350)
                      +.++.|+...++.                                                          .   ..|.+
T Consensus       212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~  291 (399)
T KOG0296|consen  212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES  291 (399)
T ss_pred             ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence            4455555322210                                                          0   01111


Q ss_pred             EEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCC
Q 018806          218 LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSG  296 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~  296 (350)
                      +.|+..=...|+++.| |+|.|||+.....+.+..|..+|..+.|-+ ..+|++++.+|.|+.||.++|.++ .+.+|..
T Consensus       292 ~~~ss~lpL~A~G~vd-G~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~  369 (399)
T KOG0296|consen  292 IPSSSKLPLAACGSVD-GTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM  369 (399)
T ss_pred             cccccccchhhccccc-ceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch
Confidence            2222222345566667 688888877777777788888999999998 678999999999999999999984 6789999


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          297 FVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      .|..++++|+++++++++ ++...++.+
T Consensus       370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  370 GILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            999999999999999988 554555543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=7.7e-25  Score=192.70  Aligned_cols=223  Identities=18%  Similarity=0.209  Sum_probs=175.7

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCcee-EecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      |.++....+|-+||+|+.|.++++|.++.+..+..+ ....+|...|.+++++..+.. +++++.|.++++|++...+..
T Consensus       368 vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~  447 (775)
T KOG0319|consen  368 VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET  447 (775)
T ss_pred             eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc
Confidence            677775567899999999999999998543333222 222479999999999876554 555666999999999852221


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce-eeeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~-~~~~~~~~v~  258 (350)
                      ....                .+.+..+...| +..|++++.+|+.+.|++++.|+ +.++|++...... .+.+|..++.
T Consensus       448 ~~~~----------------~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~SqDk-taKiW~le~~~l~~vLsGH~RGvw  509 (775)
T KOG0319|consen  448 AFPI----------------VLTCRYTERAH-DKDINCVAIAPNDKLIATGSQDK-TAKIWDLEQLRLLGVLSGHTRGVW  509 (775)
T ss_pred             cccc----------------eehhhHHHHhh-cccccceEecCCCceEEeccccc-ceeeecccCceEEEEeeCCccceE
Confidence            1100                00011123445 47999999999999999999996 9999999976654 4667899999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCceee
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHL  336 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  336 (350)
                      ++.|+|..+.+++++.|++|+||.+.+..+ .++.+|...|..+.|-.+|++|++++ ++-+.+|.++...+..++.+|.
T Consensus       510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~  589 (775)
T KOG0319|consen  510 CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN  589 (775)
T ss_pred             EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence            999999999999999999999999999998 56778999999999999999999887 6667788887777888999998


Q ss_pred             cccccc
Q 018806          337 LPVDLP  342 (350)
Q Consensus       337 ~~v~~~  342 (350)
                      ..|=..
T Consensus       590 DrvWaL  595 (775)
T KOG0319|consen  590 DRVWAL  595 (775)
T ss_pred             ceeEEE
Confidence            887433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.6e-24  Score=191.09  Aligned_cols=195  Identities=17%  Similarity=0.293  Sum_probs=163.4

Q ss_pred             cCeeEEEEecCCCEEEEEECC-CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGS-TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      .+|..++|+..|.+||.|+.. |.+-||++..  ...+.. .++|-..+++++++|||+.+++++.||+|+|||...+  
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs--EsYVlK-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--  382 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS--ESYVLK-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--  382 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeec--cceeee-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--
Confidence            479999999999999998764 8999999954  332232 3579999999999999999999999999999999833  


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCC--C
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG--G  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~--~  256 (350)
                                             .|.-++..|+ +.|+.+.|+..|+.+++++.| |+|+.||+......+.+..+.  .
T Consensus       383 -----------------------fC~vTFteHt-s~Vt~v~f~~~g~~llssSLD-GtVRAwDlkRYrNfRTft~P~p~Q  437 (893)
T KOG0291|consen  383 -----------------------FCFVTFTEHT-SGVTAVQFTARGNVLLSSSLD-GTVRAWDLKRYRNFRTFTSPEPIQ  437 (893)
T ss_pred             -----------------------eEEEEeccCC-CceEEEEEEecCCEEEEeecC-CeEEeeeecccceeeeecCCCcee
Confidence                                   3566778887 799999999999999999999 899999999887766555444  4


Q ss_pred             eEEEEEcCCCCEEEEEecCC-eEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAKFDG-TFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~-~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      ..+++..|.|..+++|+.|. .|++|++++|+.. .+.+|+++|.+++|+|+|..|++++ |+.+++|.+-
T Consensus       438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence            56888889999999998887 7999999999985 5779999999999999999999887 6555555443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=175.28  Aligned_cols=193  Identities=16%  Similarity=0.286  Sum_probs=162.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|.++.|-|.|.+|++++.|.+|+.|++++  +.++..+ .+|...|..++.+.||..+++++.|.++++|-+......
T Consensus       194 h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k  270 (406)
T KOG0295|consen  194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK  270 (406)
T ss_pred             cceeeEEEEecCCeeeecccccceeEEeccc--ceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh
Confidence            3699999999999999999999999999964  7777776 489999999999999877777777999999999855332


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC---------------CCeEEEEEeCCCeEEEEeCCC
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---------------GRYLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------------g~~l~~~~~d~g~i~iwd~~~  244 (350)
                                               ..++.|. -.|.+++|-|.               ++++.+++.| ++|++||+.+
T Consensus       271 -------------------------~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD-ktIk~wdv~t  323 (406)
T KOG0295|consen  271 -------------------------AELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD-KTIKIWDVST  323 (406)
T ss_pred             -------------------------hhhhccc-cceEEEEecccccCcchhhccCCCCCccEEEeeccc-ceEEEEeccC
Confidence                                     2245554 46777777552               3588999999 5999999999


Q ss_pred             CCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          245 GLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       245 ~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      +.+.. +.+|..+|..++|+|-|+||+++.+|+++++||++++++ ..+..|...++++.|+.+-.++++|+ +....+|
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence            98764 667899999999999999999999999999999999998 56778999999999999999999886 5545554


Q ss_pred             E
Q 018806          322 S  322 (350)
Q Consensus       322 ~  322 (350)
                      +
T Consensus       404 E  404 (406)
T KOG0295|consen  404 E  404 (406)
T ss_pred             e
Confidence            3

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.4e-24  Score=169.20  Aligned_cols=214  Identities=19%  Similarity=0.236  Sum_probs=165.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC-CeEEEEecCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .|.+|+|+.+|..||+|+.|+++.+|+++... ........+|.+.|-.++|+|.. ..+++++.|++|++||++..+..
T Consensus        22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             cceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence            38999999999999999999999999997531 11222234788899999998764 45666777999999999966655


Q ss_pred             ceeeccc------ccccce-e-cCCCCCc-------------------------------------------------eE
Q 018806          180 ASVRSGA------ASFLGA-L-SRGPGTR-------------------------------------------------WT  202 (350)
Q Consensus       180 ~~~~~~~------~~~~~~-~-~~~~~~~-------------------------------------------------~~  202 (350)
                      ..+....      +++.+. + ..+.++.                                                 ++
T Consensus       101 ~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk  180 (313)
T KOG1407|consen  101 ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK  180 (313)
T ss_pred             EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence            5543321      111111 1 1111111                                                 01


Q ss_pred             EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 018806          203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLW  281 (350)
Q Consensus       203 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iw  281 (350)
                      .++.++.|. ....++.|+|+|+++|+|+.|. .+.+||++..-+.+. ..+.-+|..+.||.||++||++++|..|-|=
T Consensus       181 pv~si~AH~-snCicI~f~p~GryfA~GsADA-lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA  258 (313)
T KOG1407|consen  181 PVQSIKAHP-SNCICIEFDPDGRYFATGSADA-LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIA  258 (313)
T ss_pred             cccccccCC-cceEEEEECCCCceEeeccccc-eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeE
Confidence            233566775 6888999999999999999995 999999998777664 4578899999999999999999999999999


Q ss_pred             eCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       282 d~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ++++|....-..+.++-..++|+|...+||++++..
T Consensus       259 ~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  259 EVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence            999999877777888999999999999999998443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.93  E-value=5.7e-24  Score=180.62  Aligned_cols=244  Identities=16%  Similarity=0.240  Sum_probs=176.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC----CcEEEEecC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPS  174 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~  174 (350)
                      ..+|+-..+||.|-|+|+|...|+|+|||....+- .+...+....++|..++|++++++++++|..    |.+.+||..
T Consensus        59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG  137 (603)
T KOG0318|consen   59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG  137 (603)
T ss_pred             cceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-eeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence            45689999999999999999999999999863322 2222223467899999999999999998874    678888875


Q ss_pred             C-----CCCCceeecccccccce--ec-CCCCC--------ceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEE
Q 018806          175 Y-----PGNAASVRSGAASFLGA--LS-RGPGT--------RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFT  238 (350)
Q Consensus       175 ~-----~~~~~~~~~~~~~~~~~--~~-~~~~~--------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~  238 (350)
                      .     .++.+.+....+.+...  +. .+.|.        .++...+++.|+ .-|.++.|+|||.++++++.| |++.
T Consensus       138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs-kFV~~VRysPDG~~Fat~gsD-gki~  215 (603)
T KOG0318|consen  138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS-KFVNCVRYSPDGSRFATAGSD-GKIY  215 (603)
T ss_pred             CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc-cceeeEEECCCCCeEEEecCC-ccEE
Confidence            2     23334444433333222  22 22222        244555677787 699999999999999999999 7999


Q ss_pred             EEeCCCCCceeee----ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCC----CCeEEEEEcCCCCEE
Q 018806          239 IWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS----GFVTGATWDPEGRMI  310 (350)
Q Consensus       239 iwd~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----~~v~~~~~s~~g~~l  310 (350)
                      +||-.+++.....    .|++.|.+++|+||++.+++++.|.+++|||+.+.++.+.....    ..--.+.|. ++.+|
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lI  294 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLI  294 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEE
Confidence            9999999876544    47899999999999999999999999999999999885433222    233456676 44444


Q ss_pred             EEEECCCeEEEEEEeCCCCCCCceeecccccceeec
Q 018806          311 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  346 (350)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  346 (350)
                      .+..++.+......-.+....+.+|..+|+...+..
T Consensus       295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~  330 (603)
T KOG0318|consen  295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP  330 (603)
T ss_pred             EEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence            444465555555444443447789999998776553

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.93  E-value=4.4e-24  Score=169.54  Aligned_cols=218  Identities=21%  Similarity=0.247  Sum_probs=171.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~  179 (350)
                      +|..+.|.+|++.|++++.|++++.||.++  ++..... .+|...|+++.-+.-|..++.+++ |+++++||++.+...
T Consensus        92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~t--G~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~  168 (338)
T KOG0265|consen   92 AVMELHGMRDGSHILSCGTDKTVRGWDAET--GKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI  168 (338)
T ss_pred             eeEeeeeccCCCEEEEecCCceEEEEeccc--ceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence            499999999999999999999999999965  6665655 579999999996666777888777 599999999965554


Q ss_pred             ceeec------cccc--ccceecCCCCCceEEee--------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          180 ASVRS------GAAS--FLGALSRGPGTRWTLVD--------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       180 ~~~~~------~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                      +.+..      ..+.  ....++.+-++.++.|+        ++.||. ..|+.+..+|+|.++.+-+.|+ ++++||++
T Consensus       169 ~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~-DtIt~lsls~~gs~llsnsMd~-tvrvwd~r  246 (338)
T KOG0265|consen  169 KTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA-DTITGLSLSRYGSFLLSNSMDN-TVRVWDVR  246 (338)
T ss_pred             hccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc-CceeeEEeccCCCccccccccc-eEEEEEec
Confidence            44421      1221  22234555554444443        578887 6999999999999999999996 99999998


Q ss_pred             CCC----ceeee-ec----CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEE
Q 018806          244 QGL----GTPIR-RG----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       244 ~~~----~~~~~-~~----~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      ...    +..+. ++    ......++|+|+++.+.+|+.|+.+++||...... ..+.+|.+.|..++|+|....|.++
T Consensus       247 p~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~  326 (338)
T KOG0265|consen  247 PFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSC  326 (338)
T ss_pred             ccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEe
Confidence            542    23333 22    24567899999999999999999999999988666 5788999999999999999999988


Q ss_pred             E-CCCeEEEEE
Q 018806          314 F-AGSLTLGSI  323 (350)
Q Consensus       314 ~-~~~~~~~~~  323 (350)
                      + ++.++++++
T Consensus       327 ~sdk~i~lgei  337 (338)
T KOG0265|consen  327 SSDKTIYLGEI  337 (338)
T ss_pred             ccCceeEeecc
Confidence            6 666777665

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=1.5e-23  Score=178.26  Aligned_cols=216  Identities=22%  Similarity=0.340  Sum_probs=165.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .+|++++|+|++++|++++.+|.+++|++..  +...... ..|...+..+.|+|+++.+++++.++.+++|++..... 
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-   85 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLET--GELLRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-   85 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeC--CCcEEEE-ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc-
Confidence            3499999999999999999999999999964  3333333 46888899999999987888888899999999984322 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                                              ...+..|. ..+.++.|+++++.+++++.+ |.|.+||+++++... +..|...+.
T Consensus        86 ------------------------~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~  139 (289)
T cd00200          86 ------------------------VRTLTGHT-SYVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRGHTDWVN  139 (289)
T ss_pred             ------------------------eEEEeccC-CcEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEEEEEeccCCCcEE
Confidence                                    22234443 589999999998888888767 699999999776554 334778899


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCceee
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHL  336 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  336 (350)
                      +++|+|+++++++++.|+.|++||+++++. ..+..+...+.+++|+|+++.+++++ ++.+.+|.++.......+..|.
T Consensus       140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~  219 (289)
T cd00200         140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE  219 (289)
T ss_pred             EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC
Confidence            999999999999888899999999997776 44557777999999999998888887 4444444433322233444566


Q ss_pred             cccccceee
Q 018806          337 LPVDLPDIV  345 (350)
Q Consensus       337 ~~v~~~~~~  345 (350)
                      .++....+.
T Consensus       220 ~~i~~~~~~  228 (289)
T cd00200         220 NGVNSVAFS  228 (289)
T ss_pred             CceEEEEEc
Confidence            555544443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=2.2e-24  Score=189.90  Aligned_cols=190  Identities=14%  Similarity=0.167  Sum_probs=161.5

Q ss_pred             CccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCC-ceeE-----ecCCCCCCeeEEEEeeCCCeEEEEecCCcEEE
Q 018806           98 PEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGK-DACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  170 (350)
Q Consensus        98 ~~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~-~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i  170 (350)
                      +...|.+++++..+ .+++++|.|+++++|++...... ....     ....|+..|++++.+|+.+.+++++.|++.+|
T Consensus       410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi  489 (775)
T KOG0319|consen  410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI  489 (775)
T ss_pred             cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence            34579999998766 79999999999999999641111 1111     12369999999999999777777888999999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~  250 (350)
                      |+++                         ...+..++.||. ..|+++.|+|..+.+++++.| ++|+||.+.+..+...
T Consensus       490 W~le-------------------------~~~l~~vLsGH~-RGvw~V~Fs~~dq~laT~SgD-~TvKIW~is~fSClkT  542 (775)
T KOG0319|consen  490 WDLE-------------------------QLRLLGVLSGHT-RGVWCVSFSKNDQLLATCSGD-KTVKIWSISTFSCLKT  542 (775)
T ss_pred             eccc-------------------------CceEEEEeeCCc-cceEEEEeccccceeEeccCC-ceEEEEEeccceeeee
Confidence            9998                         223466789997 799999999999999999999 5999999999998775


Q ss_pred             e-ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          251 R-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       251 ~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      + +|...|..+.|-.+|++|++++.||-|++|+++++++ ..+-.|...|++++-++.+.++++|+
T Consensus       543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg  608 (775)
T KOG0319|consen  543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGG  608 (775)
T ss_pred             ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecC
Confidence            5 5889999999999999999999999999999999998 56779999999999999999888774

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=178.10  Aligned_cols=245  Identities=13%  Similarity=0.158  Sum_probs=180.8

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCcc---------------------------CeeEEEEecCCCEEEEEECCCeEEEE
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPEV---------------------------DLQGVSWHQHKHIVAFISGSTQVIVR  126 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~~---------------------------~V~~v~~sp~g~~la~~s~d~~i~iw  126 (350)
                      ..+++.|..++....+.+.+..+..+.                           +|.-+.||||.++|++++.|..+.+|
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            467778888887777776655554432                           68999999999999999999999999


Q ss_pred             EccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeee
Q 018806          127 DYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF  206 (350)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (350)
                      |+.+  +.....+..++...+.+++|.|||.++++++.|+++..||++ +.............+..++..+|+++.+.-.
T Consensus       297 Dv~t--gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  297 DVDT--GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             cCCc--chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence            9965  666666655677899999999999999999999999999998 3322222222223344466666666543211


Q ss_pred             -----------------ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce-eeeecCC--CeEEEEEcC-C
Q 018806          207 -----------------LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFG--GLSILKWSP-T  265 (350)
Q Consensus       207 -----------------~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~-~~~~~~~--~v~~~~~sp-~  265 (350)
                                       +... ..+|+++..|.|++++++.-.+. .+.+||++..... ...+|..  .+..-||-- +
T Consensus       374 ~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~  451 (519)
T KOG0293|consen  374 VDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQ-EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN  451 (519)
T ss_pred             cccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccC-eeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence                             1111 25899999999999999888884 9999999966544 3555653  355566754 5


Q ss_pred             CCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 018806          266 GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       266 g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                      ..++++|++|+.|+||+..+++. ..+.+|...|.+++|+|....++++.+++.++..|
T Consensus       452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence            68999999999999999999998 56889999999999999776655444333344444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=7.9e-24  Score=173.05  Aligned_cols=241  Identities=15%  Similarity=0.231  Sum_probs=178.9

Q ss_pred             CcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe---EEEEecCCcEE
Q 018806           93 HVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR---SLSVGCKGGIC  169 (350)
Q Consensus        93 ~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~---l~~~~~d~~v~  169 (350)
                      ...+++...|.++...  +++|++|++||.+++|+..   |+....+ .+|.++|.+++|...+..   +++++.|.+++
T Consensus        99 l~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~---Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen   99 LQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK---GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             cccccchhhhhhhccc--CceEEEeecCCeeEEEecC---CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            4567777888888887  7899999999999999975   6666655 489999998888544344   88888899999


Q ss_pred             EEecCCCCCCcee---eccccccccee----------cCCCCCceE---------------------------------E
Q 018806          170 IWAPSYPGNAASV---RSGAASFLGAL----------SRGPGTRWT---------------------------------L  203 (350)
Q Consensus       170 iwd~~~~~~~~~~---~~~~~~~~~~~----------~~~~~~~~~---------------------------------~  203 (350)
                      +|.++.+......   ..++...+..+          +.+.|..+.                                 .
T Consensus       173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             EEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            9988744322111   11222222222          222222222                                 2


Q ss_pred             eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       204 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      .-++.||. ..|.++.|++ ...+++++.|. +|+.||+.++...........+.++..+|..++|++|+.|..+++||.
T Consensus       253 ~vtl~GHt-~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  253 LVTLEGHT-EPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             eEEecccc-cceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence            23577887 7999999998 67899999996 999999999998887778889999999999999999999999999999


Q ss_pred             CCCce----eccccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEEEeCCCCC-CCceeecccccc
Q 018806          284 NTWTS----EPWSSTSGFVTGATWDPEGRMILLAF--AGSLTLGSIHFASKPP-SLDAHLLPVDLP  342 (350)
Q Consensus       284 ~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~v~~~  342 (350)
                      +++.-    .++.+|.+.|.++.|+|...++++++  |+...+|+++-...+. .+.+|...|-..
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v  395 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV  395 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence            98753    46789999999999999888776665  5555555555444332 667777666443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=2e-24  Score=197.90  Aligned_cols=236  Identities=20%  Similarity=0.351  Sum_probs=180.1

Q ss_pred             cCeeEEEEecCCCEEEEEE--CCCeEEEEEccCCC----------CCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCc
Q 018806          100 VDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSE----------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG  167 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s--~d~~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  167 (350)
                      ..|.++..+|||..+|+|+  .|+.+.||+.+.--          .+.++.. ..|.+.|+|+.|+|||++|++++.|+.
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeeccCcce
Confidence            3589999999999999999  89999999864210          1122223 469999999999999999988888999


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      |.||.... .....+...    .  =-......|++...+.+|. ..|.+++|+|++.+|++++.|+ +|.+||..+.+.
T Consensus        93 v~iW~~~~-~~~~~~fgs----~--g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~Dn-sViiwn~~tF~~  163 (942)
T KOG0973|consen   93 VMIWERAE-IGSGTVFGS----T--GGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDN-SVIIWNAKTFEL  163 (942)
T ss_pred             EEEeeecc-cCCcccccc----c--ccccccceeeEEEEEecCC-CccceeccCCCccEEEEecccc-eEEEEcccccee
Confidence            99999873 111110000    0  0011124689999999996 7999999999999999999995 999999999866


Q ss_pred             ee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cc------cCCCCeEEEEEcCCCCEEEEEE--C-C
Q 018806          248 TP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS------STSGFVTGATWDPEGRMILLAF--A-G  316 (350)
Q Consensus       248 ~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~------~~~~~v~~~~~s~~g~~l~~~~--~-~  316 (350)
                      .. +..|.+.|-.+.|.|-|++||+-+.|++|+||++.+..... +.      .....+..+.|||||++|++..  . +
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence            54 56788999999999999999999999999999977655422 21      2345678999999999999875  2 2


Q ss_pred             CeEEEEE--EeCCCCCCCceeecccccceee
Q 018806          317 SLTLGSI--HFASKPPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       317 ~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~  345 (350)
                      ...+-.+  ..|.....+-+|..|++...++
T Consensus       244 ~~~~~IieR~tWk~~~~LvGH~~p~evvrFn  274 (942)
T KOG0973|consen  244 KSTIAIIERGTWKVDKDLVGHSAPVEVVRFN  274 (942)
T ss_pred             cceeEEEecCCceeeeeeecCCCceEEEEeC
Confidence            2333333  4455566888999999877665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.9e-24  Score=177.40  Aligned_cols=212  Identities=14%  Similarity=0.174  Sum_probs=168.4

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..+|+-+.||++|++||+++.|.+..||.+.....-.+.....+|..+|..+.||||.+++++++.+..+.+||+.++..
T Consensus       224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~  303 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL  303 (519)
T ss_pred             CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence            45899999999999999999999999999864433233333458999999999999999999999999999999996554


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-CCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~~~v  257 (350)
                      ......                        + ....+.+.+|.|||..+++|+.| +++..||++......-.+- ...|
T Consensus       304 ~~~y~~------------------------~-~~~S~~sc~W~pDg~~~V~Gs~d-r~i~~wdlDgn~~~~W~gvr~~~v  357 (519)
T KOG0293|consen  304 RHLYPS------------------------G-LGFSVSSCAWCPDGFRFVTGSPD-RTIIMWDLDGNILGNWEGVRDPKV  357 (519)
T ss_pred             hhhccc------------------------C-cCCCcceeEEccCCceeEecCCC-CcEEEecCCcchhhccccccccee
Confidence            332221                        1 23688999999999999999999 5999999987654333332 3568


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCceee
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHL  336 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  336 (350)
                      .+++.++||+++++...|..|++|+.++...+.+.....+|+++..|.||+++++.- +..+.+|++.-+.....+.+|.
T Consensus       358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK  437 (519)
T ss_pred             EEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence            999999999999999999999999999877776777788999999999999998875 5555665555332233555553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.3e-24  Score=165.90  Aligned_cols=218  Identities=19%  Similarity=0.271  Sum_probs=163.4

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~  176 (350)
                      ...+..++|+++- +.+++++.||+++|||...  ...+....+.|...|.++.|++..++ +++++-|++|++|+...+
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP  137 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence            4568999999965 6788899999999999743  33334444689999999999986544 555556999999998844


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCC-CceeeeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG-LGTPIRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~-~~~~~~~~~  254 (350)
                      ..                         +.++.+|. ..|...+|+|. ...+++++.| |++++||++.. +...+..|.
T Consensus       138 ~S-------------------------v~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd-~~l~lwdvr~~gk~~~i~ah~  190 (311)
T KOG0277|consen  138 NS-------------------------VQTFNGHN-SCIYQAAFSPHIPNLFASASGD-GTLRLWDVRSPGKFMSIEAHN  190 (311)
T ss_pred             cc-------------------------eEeecCCc-cEEEEEecCCCCCCeEEEccCC-ceEEEEEecCCCceeEEEecc
Confidence            33                         45578886 79999999995 6788889999 79999999864 444566688


Q ss_pred             CCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC-
Q 018806          255 GGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-  330 (350)
Q Consensus       255 ~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~-  330 (350)
                      ..+.++.|+. +...|++|+.|+.|++||+++-+.  ..+.+|+-.|..+.|||...-|+++++-+.++..|+...... 
T Consensus       191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence            8999999998 556789999999999999998775  456789999999999998877666654444444444432221 


Q ss_pred             --CCceeecccccceee
Q 018806          331 --SLDAHLLPVDLPDIV  345 (350)
Q Consensus       331 --~~~~~~~~v~~~~~~  345 (350)
                        +...|.--+.+..++
T Consensus       271 ~e~~~~HtEFv~g~Dws  287 (311)
T KOG0277|consen  271 IETVDHHTEFVCGLDWS  287 (311)
T ss_pred             hhhhhccceEEeccccc
Confidence              444555444444433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6e-24  Score=183.98  Aligned_cols=187  Identities=16%  Similarity=0.275  Sum_probs=165.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..+|++..|-+..+++++|+.|..|+||+.++  +..+..+ ..|..-|.+++.+|.-..+++++.|-+|++||.+    
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we----  127 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--GEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE----  127 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEeccc--ceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeecc----
Confidence            34788999999999999999999999999954  6666666 5899999999999998888888889999999997    


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~  256 (350)
                                          ..|.+.+++.||. .-|++++|+| |...+++++.| ++|++|.+.+..+.. +.+|..+
T Consensus       128 --------------------~~wa~~qtfeGH~-HyVMqv~fnPkD~ntFaS~sLD-rTVKVWslgs~~~nfTl~gHekG  185 (794)
T KOG0276|consen  128 --------------------NEWACEQTFEGHE-HYVMQVAFNPKDPNTFASASLD-RTVKVWSLGSPHPNFTLEGHEKG  185 (794)
T ss_pred             --------------------CceeeeeEEcCcc-eEEEEEEecCCCccceeeeecc-ccEEEEEcCCCCCceeeeccccC
Confidence                                2688899999997 6999999999 57789999999 599999999887654 6678999


Q ss_pred             eEEEEEcCC--CCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          257 LSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       257 v~~~~~sp~--g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      |.++++-+-  ..+|++|++|.+|+|||.++.++ .++.+|...|..+.|+|.=..+++|+
T Consensus       186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs  246 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS  246 (794)
T ss_pred             cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence            999999874  46999999999999999999998 56779999999999999999999886

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.9e-24  Score=163.04  Aligned_cols=182  Identities=16%  Similarity=0.210  Sum_probs=155.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .+|.++.|+-||++.++++.|+++++|+.-  .+..+..+ .+|...|..++.+.|+..++++|.|+.+.+||+.+++. 
T Consensus        18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~--rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv-   93 (307)
T KOG0316|consen   18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPL--RGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV-   93 (307)
T ss_pred             cceEEEEEccCCCEEEEcCCCceEEeeccc--ccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccCee-
Confidence            469999999999999999999999999984  47776666 58999999999999999999999999999999995543 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee---ecCCC
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGG  256 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~---~~~~~  256 (350)
                                              .+.+.+|. +.|..++|+.+...+++++.|. ++++||.++....+++   .....
T Consensus        94 ------------------------~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~  147 (307)
T KOG0316|consen   94 ------------------------DRRFRGHL-AQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDG  147 (307)
T ss_pred             ------------------------eeeccccc-ceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCc
Confidence                                    55578886 8999999999999999999996 9999999987665544   34578


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      |.++..+  +..|++|+.||+++.||++.|+... .....+|+++.|++||+.+++++
T Consensus       148 V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~  202 (307)
T KOG0316|consen  148 VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASS  202 (307)
T ss_pred             eeEEEec--ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEee
Confidence            8888774  5679999999999999999987732 23456899999999999999886

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=6.7e-23  Score=185.39  Aligned_cols=198  Identities=15%  Similarity=0.235  Sum_probs=139.3

Q ss_pred             ccCeeEEEEecC-CCEEEEEECCCeEEEEEccCCCCC-----ceeEecCCCCCCeeEEEEeeCCCeEE-EEecCCcEEEE
Q 018806           99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK-----DACILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIW  171 (350)
Q Consensus        99 ~~~V~~v~~sp~-g~~la~~s~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iw  171 (350)
                      ...|.+++|+|+ +++||+|+.|++|+||++......     .......+|...|.+++|+|++..++ +++.|++|+||
T Consensus        74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence            456999999997 799999999999999999642110     11122357999999999999987765 56679999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-e
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I  250 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~  250 (350)
                      |+.......                         .+. +. ..|.+++|+|+|+.|++++.| +.|++||+++++... +
T Consensus       154 Dl~tg~~~~-------------------------~i~-~~-~~V~SlswspdG~lLat~s~D-~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        154 DIENEKRAF-------------------------QIN-MP-KKLSSLKWNIKGNLLSGTCVG-KHMHIIDPRKQEIASSF  205 (568)
T ss_pred             ECCCCcEEE-------------------------EEe-cC-CcEEEEEECCCCCEEEEEecC-CEEEEEECCCCcEEEEE
Confidence            998443211                         122 22 579999999999999999988 699999999987654 4


Q ss_pred             eecCCCeE-----EEEEcCCCCEEEEEecCC----eEEEEeCCC-CceeccccC---CCCeEEEEEcCCCCEEEEEE-CC
Q 018806          251 RRGFGGLS-----ILKWSPTGDYFFAAKFDG----TFYLWETNT-WTSEPWSST---SGFVTGATWDPEGRMILLAF-AG  316 (350)
Q Consensus       251 ~~~~~~v~-----~~~~sp~g~~l~~~~~d~----~v~iwd~~~-~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~-~~  316 (350)
                      ..|.+.+.     ...|++++.+|++++.|+    .|+|||++. .+......+   .+.+...-..++|.++++|. ++
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            45655433     234568999998887664    799999995 343333222   23333333344577777664 44


Q ss_pred             CeEEEEEE
Q 018806          317 SLTLGSIH  324 (350)
Q Consensus       317 ~~~~~~~~  324 (350)
                      .+++|++.
T Consensus       286 tIr~~e~~  293 (568)
T PTZ00420        286 NCRYYQHS  293 (568)
T ss_pred             eEEEEEcc
Confidence            45555553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=7e-23  Score=197.79  Aligned_cols=199  Identities=14%  Similarity=0.253  Sum_probs=154.4

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCC--CCCc--eeEecCCCCCCeeEEEEeeC-CCeEEEEecCCcEEEEe
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--EGKD--ACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWA  172 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~--~~~~--~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd  172 (350)
                      +...|.+++|+|+|++||+|+.|+.|+||+....  .+..  .......+...+.+++|+|. +..+++++.|++|++||
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd  561 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD  561 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence            5668999999999999999999999999997531  1110  00111134567999999875 56777777799999999


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCceeee
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIR  251 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~~~~  251 (350)
                      +....                         ....+.+|. ..|++++|+| ++.+|++++.| |+|++||++++......
T Consensus       562 ~~~~~-------------------------~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~D-g~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        562 VARSQ-------------------------LVTEMKEHE-KRVWSIDYSSADPTLLASGSDD-GSVKLWSINQGVSIGTI  614 (793)
T ss_pred             CCCCe-------------------------EEEEecCCC-CCEEEEEEcCCCCCEEEEEcCC-CEEEEEECCCCcEEEEE
Confidence            97332                         234466775 7999999997 78899999999 79999999988776655


Q ss_pred             ecCCCeEEEEEc-CCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          252 RGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       252 ~~~~~v~~~~~s-p~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      .+...+.++.|+ ++|.+|++|+.|+.|++||+++.+.  ..+.+|...|..+.|. ++.+|++++ ++.+.+|+++
T Consensus       615 ~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        615 KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            566789999995 5799999999999999999987653  4566899999999997 678888776 4445555543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.2e-24  Score=189.53  Aligned_cols=197  Identities=15%  Similarity=0.243  Sum_probs=155.5

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccC----------------------------CCC-----C---------
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED----------------------------SEG-----K---------  134 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~----------------------------~~~-----~---------  134 (350)
                      .+...|+++.||+||+|||+|+.|+.|+||.+-.                            ...     .         
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            3455899999999999999999999999998743                            000     0         


Q ss_pred             ---------------ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCC
Q 018806          135 ---------------DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  199 (350)
Q Consensus       135 ---------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (350)
                                     .+...+.+|.+.|.++.||-+ +.|++++.|++|++|++....+...                  
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~------------------  405 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV------------------  405 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeE------------------
Confidence                           000122478999999999988 8999999999999999985544332                  


Q ss_pred             ceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeE
Q 018806          200 RWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  278 (350)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v  278 (350)
                             + .|. .-|+|++|+| |.+++++|+.| |.|+||++...+......-..-|++++|.|||+..+.|+.+|.+
T Consensus       406 -------F-~Hn-dfVTcVaFnPvDDryFiSGSLD-~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C  475 (712)
T KOG0283|consen  406 -------F-SHN-DFVTCVAFNPVDDRYFISGSLD-GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYC  475 (712)
T ss_pred             -------E-ecC-CeeEEEEecccCCCcEeecccc-cceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEE
Confidence                   2 233 6999999999 78999999999 79999999988776666666889999999999999999999999


Q ss_pred             EEEeCCCCceec---cc-------cCCCCeEEEEEcCCCC--EEEEEECCCeEEEEE
Q 018806          279 YLWETNTWTSEP---WS-------STSGFVTGATWDPEGR--MILLAFAGSLTLGSI  323 (350)
Q Consensus       279 ~iwd~~~~~~~~---~~-------~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~~~  323 (350)
                      ++|+....+...   +.       .+. .|+.+.|.|...  .|+++.|..++|++.
T Consensus       476 ~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  476 RFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             EEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            999998877632   11       233 799999987544  566555766666666

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.3e-23  Score=186.95  Aligned_cols=248  Identities=12%  Similarity=0.148  Sum_probs=196.0

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCcc------------------------CeeEEEEecCCCEEEEEECCCeEEEEEc
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDY  128 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~------------------------~V~~v~~sp~g~~la~~s~d~~i~iw~~  128 (350)
                      |+.-+..|.+.+....++|.++.++.+.                        -|+.+.|++.-.+|+++|.|.+|+||++
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw  122 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW  122 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence            4566778999998899999988877754                        4899999999999999999999999999


Q ss_pred             cCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccce---ec--CCCCCceEE
Q 018806          129 EDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA---LS--RGPGTRWTL  203 (350)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~  203 (350)
                      .  +.+++..++ +|...|.|.+|+|....+++++-|.+|+|||+. +-.......+.......   ..  .-+.....+
T Consensus       123 q--sr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis-GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  123 Q--SRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS-GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             c--CCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEEeec-chhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence            5  477777774 999999999999986778888889999999997 22222222221100000   00  001112345


Q ss_pred             eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC---ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 018806          204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL---GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL  280 (350)
Q Consensus       204 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  280 (350)
                      ...+.||. ..|.-++|+|.-..|++|+.|. .|++|.+...+   .....+|...|.++-|+|...+|++.++|++|+|
T Consensus       199 K~VLEGHD-RGVNwaAfhpTlpliVSG~DDR-qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  199 KHVLEGHD-RGVNWAAFHPTLPLIVSGADDR-QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             eeeecccc-cccceEEecCCcceEEecCCcc-eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence            66788996 7999999999999999999995 99999987654   3356789999999999999999999999999999


Q ss_pred             EeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          281 WETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       281 wd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ||+...+.. ++....+..+.++-+|..+++++|.|+...++.+...
T Consensus       277 wDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE  323 (1202)
T KOG0292|consen  277 WDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE  323 (1202)
T ss_pred             EecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc
Confidence            999988774 4556677899999999999999998888777777643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=3.8e-23  Score=171.79  Aligned_cols=216  Identities=17%  Similarity=0.203  Sum_probs=171.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|+.+.++|+...+++++.|..|+||....  ...... ...|..+|+.+..+|.|.++++++.|++..+.|++.+...
T Consensus       262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~--~s~~~~-~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l  338 (506)
T KOG0289|consen  262 KKITSVKFHKDLDTVITASADEIIRVWSVPL--SSEPTS-SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL  338 (506)
T ss_pred             eEEEEEEeccchhheeecCCcceEEeecccc--ccCccc-cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence            3699999999999999999999999999864  333333 3579999999999999999999999999999999854433


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                      ..+..                       . ..+-.+++.+|+|||-.|.++..| |.+++||+.++.... +-+|.++|.
T Consensus       339 t~vs~-----------------------~-~s~v~~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fpght~~vk  393 (506)
T KOG0289|consen  339 TVVSD-----------------------E-TSDVEYTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFPGHTGPVK  393 (506)
T ss_pred             EEEee-----------------------c-cccceeEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCCCCCCcee
Confidence            22111                       1 123468999999999999999999 799999999887543 556889999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE----eCCCCCCC
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIH----FASKPPSL  332 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~----~~~~~~~~  332 (350)
                      .++|+.+|-||+++++|+.|++||++.-+..+..  .....+.++.|.+.|++|+.+ +.+.+++..+    -|.....+
T Consensus       394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~  472 (506)
T KOG0289|consen  394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKEL  472 (506)
T ss_pred             EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehh
Confidence            9999999999999999999999999887653322  223369999999999999987 5567888887    66666566


Q ss_pred             ceeeccccccee
Q 018806          333 DAHLLPVDLPDI  344 (350)
Q Consensus       333 ~~~~~~v~~~~~  344 (350)
                      ..|....++-.+
T Consensus       473 ~~~sg~st~v~F  484 (506)
T KOG0289|consen  473 ADHSGLSTGVRF  484 (506)
T ss_pred             hhcccccceeee
Confidence            666654444433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=1.3e-23  Score=167.81  Aligned_cols=202  Identities=17%  Similarity=0.254  Sum_probs=156.6

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccC---------------CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED---------------SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG  163 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~---------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  163 (350)
                      ..++++.+|||||.++|+|+.|..|+|+|++.               .....+......|...|+.+.|+|....|++++
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s  191 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS  191 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence            34799999999999999999999999999861               111123344458999999999999966666666


Q ss_pred             cCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                      .|++|+++|+........+                      +.++.-  ..|.+++|+|.|.+|+.+.... ++++||++
T Consensus       192 rD~tvKlFDfsK~saKrA~----------------------K~~qd~--~~vrsiSfHPsGefllvgTdHp-~~rlYdv~  246 (430)
T KOG0640|consen  192 RDNTVKLFDFSKTSAKRAF----------------------KVFQDT--EPVRSISFHPSGEFLLVGTDHP-TLRLYDVN  246 (430)
T ss_pred             CCCeEEEEecccHHHHHHH----------------------HHhhcc--ceeeeEeecCCCceEEEecCCC-ceeEEecc
Confidence            7999999999843222111                      112222  5899999999999999999885 99999999


Q ss_pred             CCCce----eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--cC-CCCeEEEEEcCCCCEEEEEECC
Q 018806          244 QGLGT----PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--ST-SGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       244 ~~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~-~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      +-++.    +-..|.+.|+++.+++.|++.++++.||.|++||--++++....  .| ...|.+..|..+|++|++++ .
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~  325 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-K  325 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-C
Confidence            98764    23457789999999999999999999999999999888885443  33 45799999999999999765 2


Q ss_pred             CeEEEEEEeC
Q 018806          317 SLTLGSIHFA  326 (350)
Q Consensus       317 ~~~~~~~~~~  326 (350)
                      +..+..|.+.
T Consensus       326 DS~vkLWEi~  335 (430)
T KOG0640|consen  326 DSTVKLWEIS  335 (430)
T ss_pred             cceeeeeeec
Confidence            3344444443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=8.1e-23  Score=159.94  Aligned_cols=212  Identities=15%  Similarity=0.131  Sum_probs=170.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +++.+.++.+|.+|.+++.|.+..+|--.  +|+.+-.+ .+|.+.|+++...-+.+++++++.|.++++||++.++...
T Consensus        12 plTqiKyN~eGDLlFscaKD~~~~vw~s~--nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la   88 (327)
T KOG0643|consen   12 PLTQIKYNREGDLLFSCAKDSTPTVWYSL--NGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA   88 (327)
T ss_pred             ccceEEecCCCcEEEEecCCCCceEEEec--CCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence            48999999999999999999999999873  37776666 5999999999999998899999999999999999887776


Q ss_pred             eeecccccccceecCCCCCc-------------eEE---------------eeeccCCCCCceeeEEECCCCCeEEEEEe
Q 018806          181 SVRSGAASFLGALSRGPGTR-------------WTL---------------VDFLRSQNGEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~-------------~~~---------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  232 (350)
                      .+..........+.++..--             +.+               ...+..+ +..++.+-|.|-++.|+++..
T Consensus        89 ~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~l~~~ii~Ghe  167 (327)
T KOG0643|consen   89 TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGPLGETIIAGHE  167 (327)
T ss_pred             EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecccCCEEEEecC
Confidence            66554332222222222111             001               1122333 368899999999999999999


Q ss_pred             CCCeEEEEeCCCCCcee--eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEE
Q 018806          233 ESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l  310 (350)
                      + |.|.+||+++++...  ...|...|..+++++|..++++++.|.+-++||+.+-++........+|.+.+++|--..+
T Consensus       168 ~-G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~V  246 (327)
T KOG0643|consen  168 D-GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHV  246 (327)
T ss_pred             C-CcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceE
Confidence            9 799999999986543  3457789999999999999999999999999999999988777788899999999998888


Q ss_pred             EEEECCC
Q 018806          311 LLAFAGS  317 (350)
Q Consensus       311 ~~~~~~~  317 (350)
                      +.+++..
T Consensus       247 ilgGGqe  253 (327)
T KOG0643|consen  247 ILGGGQE  253 (327)
T ss_pred             EecCCce
Confidence            8876554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=3.3e-24  Score=172.20  Aligned_cols=200  Identities=17%  Similarity=0.165  Sum_probs=162.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe-------cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEec
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-------TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  173 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~-------~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~  173 (350)
                      .+.|..|||||++|++|+.||.|.+|++.+  |+...-+       +.-++..|.|+.|+.|...+++++.||.|++|.+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~--GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTT--GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhcc--chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            689999999999999999999999999854  4322211       1136789999999999777777778999999999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRR  252 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~  252 (350)
                      .++.+...+.                        +.|. ..|+++.||.|+..+++++.|. ++++--+++|++.. +.+
T Consensus       293 ~tG~ClRrFd------------------------rAHt-kGvt~l~FSrD~SqiLS~sfD~-tvRiHGlKSGK~LKEfrG  346 (508)
T KOG0275|consen  293 ETGQCLRRFD------------------------RAHT-KGVTCLSFSRDNSQILSASFDQ-TVRIHGLKSGKCLKEFRG  346 (508)
T ss_pred             ecchHHHHhh------------------------hhhc-cCeeEEEEccCcchhhcccccc-eEEEeccccchhHHHhcC
Confidence            9776654432                        2454 7999999999999999999995 99999999998764 778


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      |...|....|.+||..+++++.||+|++|+.++.++....   +...+|.++..-|...--++.|+....++...+.++
T Consensus       347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ  425 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ  425 (508)
T ss_pred             ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence            8899999999999999999999999999999999985432   456678888887765444445566667777777654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.8e-23  Score=187.57  Aligned_cols=217  Identities=15%  Similarity=0.178  Sum_probs=178.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      +..|.+++|+|...+|+++--.|.|++||..-  +..+..+ ..|+++|..++|+|+...++++|.|.+|+||+....+ 
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-   84 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-   84 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccce-
Confidence            34699999999999999999999999999853  5555555 4899999999999997777788888999999998443 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v  257 (350)
                                              +..++.||- .-|..+.|++.-.+|++++.| .+|+||+..++++.. +.+|...|
T Consensus        85 ------------------------clftL~GHl-DYVRt~~FHheyPWIlSASDD-QTIrIWNwqsr~~iavltGHnHYV  138 (1202)
T KOG0292|consen   85 ------------------------CLFTLLGHL-DYVRTVFFHHEYPWILSASDD-QTIRIWNWQSRKCIAVLTGHNHYV  138 (1202)
T ss_pred             ------------------------ehhhhcccc-ceeEEeeccCCCceEEEccCC-CeEEEEeccCCceEEEEecCceEE
Confidence                                    456688887 699999999999999999999 599999999999876 55788999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce------------------------------eccccCCCCeEEEEEcCCC
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS------------------------------EPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~------------------------------~~~~~~~~~v~~~~~s~~g  307 (350)
                      .|.+|+|....++++|.|.+|+|||+..-+.                              ..+.+|...|.-++|+|.-
T Consensus       139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence            9999999999999999999999999864211                              0123688889999999999


Q ss_pred             CEEEEEECCCeEEEEEEeCCCCC----CCceeecccccceeec
Q 018806          308 RMILLAFAGSLTLGSIHFASKPP----SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~  346 (350)
                      ..|++|+|+. .+..|++...+.    +..+|..+|.+.-+++
T Consensus       219 pliVSG~DDR-qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp  260 (1202)
T KOG0292|consen  219 PLIVSGADDR-QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP  260 (1202)
T ss_pred             ceEEecCCcc-eeeEEEeccccceeehhhhcccCCcceEEecC
Confidence            9998887543 566666654332    6679999998776654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=1.6e-23  Score=177.56  Aligned_cols=216  Identities=15%  Similarity=0.226  Sum_probs=159.4

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCC--ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..|.++++.|.|-++++|+.|.+|++||+..-+..  ....+.......|++++|++.|..|++.+.....+|+|-. +.
T Consensus       168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~  246 (641)
T KOG0772|consen  168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GF  246 (641)
T ss_pred             eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Cc
Confidence            36999999999999999999999999999632221  2223333455679999999999999999999999999976 22


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCCCc-eeeeec--
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLG-TPIRRG--  253 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~~~-~~~~~~--  253 (350)
                      ....+..+            +.-+.-....+||. ..+++.+|+|+.+ .+++++.| |++++||++..+. ..++.+  
T Consensus       247 ~~~e~~KG------------DQYI~Dm~nTKGHi-a~lt~g~whP~~k~~FlT~s~D-gtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  247 EIVEFSKG------------DQYIRDMYNTKGHI-AELTCGCWHPDNKEEFLTCSYD-GTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             eeeeeecc------------chhhhhhhccCCce-eeeeccccccCcccceEEecCC-CcEEEEecCCchhheeEEeecc
Confidence            22221111            11111223456776 7899999999754 57788888 7999999987643 223322  


Q ss_pred             ----CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec----cccCCC--CeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          254 ----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WSSTSG--FVTGATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       254 ----~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~----~~~~~~--~v~~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                          .-.+..++|+|||++||+|..||.|.+|+..+.....    -..|..  .|++++||+||++|++-+ ++...+|+
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence                2458899999999999999999999999986655432    225655  899999999999999876 66677777


Q ss_pred             EEeCCCCC
Q 018806          323 IHFASKPP  330 (350)
Q Consensus       323 ~~~~~~~~  330 (350)
                      ++-..++.
T Consensus       393 Lrq~kkpL  400 (641)
T KOG0772|consen  393 LRQFKKPL  400 (641)
T ss_pred             ccccccch
Confidence            76665543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=8.2e-23  Score=178.03  Aligned_cols=216  Identities=19%  Similarity=0.269  Sum_probs=171.9

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      +..|+++.|+++|++||+|..+|.+.|||...  .+.+..+...|...|.+++|..  ..+.+++.++.|..+|++....
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--QKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhh--ccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchh
Confidence            45799999999999999999999999999854  4555555434999999999982  4566666689999999985543


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeeeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~~~~~~v  257 (350)
                      ..                        ..+.+|. ..|..++|++|++++|+++.|+ .+.|||...... ..+..|...|
T Consensus       293 ~~------------------------~~~~~H~-qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~p~~~~~~H~aAV  346 (484)
T KOG0305|consen  293 VV------------------------STLQGHR-QEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPEPKFTFTEHTAAV  346 (484)
T ss_pred             hh------------------------hhhhccc-ceeeeeEECCCCCeeccCCCcc-ceEeccCCCccccEEEeccceee
Confidence            21                        1256675 7999999999999999999995 999999965544 4577899999


Q ss_pred             EEEEEcC-CCCEEEEE--ecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCC--CCC
Q 018806          258 SILKWSP-TGDYFFAA--KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASK--PPS  331 (350)
Q Consensus       258 ~~~~~sp-~g~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~--~~~  331 (350)
                      ..++|+| ....||+|  +.|+.|++||..+++..........|.++.|++..+-|+++. .....+..|++...  ...
T Consensus       347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence            9999999 46678876  459999999999999988888889999999999998888876 33344455555443  347


Q ss_pred             Cceeeccccccee
Q 018806          332 LDAHLLPVDLPDI  344 (350)
Q Consensus       332 ~~~~~~~v~~~~~  344 (350)
                      +.+|..+|-...+
T Consensus       427 l~gH~~RVl~la~  439 (484)
T KOG0305|consen  427 LLGHTSRVLYLAL  439 (484)
T ss_pred             ecCCcceeEEEEE
Confidence            7899888754433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.1e-23  Score=160.28  Aligned_cols=209  Identities=19%  Similarity=0.338  Sum_probs=157.5

Q ss_pred             ccchhhhhhhhhhccccccCCCCcCCCCccCeeEEEEec--CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCee
Q 018806           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVK  148 (350)
Q Consensus        71 ~~~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp--~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~  148 (350)
                      ..++..|.||.+.                  |+.++|..  .|.+||+++.||.|.||.-....-.+.... ..|...|+
T Consensus        46 s~ll~~L~Gh~GP------------------Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVN  106 (299)
T KOG1332|consen   46 SKLLAELTGHSGP------------------VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVN  106 (299)
T ss_pred             ceeeeEecCCCCC------------------eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccce
Confidence            4678889999877                  77778754  799999999999999999865433333333 36999999


Q ss_pred             EEEEeeC--CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC---
Q 018806          149 VLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---  223 (350)
Q Consensus       149 ~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---  223 (350)
                      +++|.|.  |-.|+++++||.|.|.+++..+                      .|...+....|. -.|++++|.|-   
T Consensus       107 sV~wapheygl~LacasSDG~vsvl~~~~~g----------------------~w~t~ki~~aH~-~GvnsVswapa~~~  163 (299)
T KOG1332|consen  107 SVAWAPHEYGLLLACASSDGKVSVLTYDSSG----------------------GWTTSKIVFAHE-IGVNSVSWAPASAP  163 (299)
T ss_pred             eecccccccceEEEEeeCCCcEEEEEEcCCC----------------------Cccchhhhhccc-cccceeeecCcCCC
Confidence            9999987  3356667779999999998442                      122223345565 68999999985   


Q ss_pred             C-----------CeEEEEEeCCCeEEEEeCCCCCc---eeeeecCCCeEEEEEcCCC----CEEEEEecCCeEEEEeCCC
Q 018806          224 G-----------RYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTG----DYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       224 g-----------~~l~~~~~d~g~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g----~~l~~~~~d~~v~iwd~~~  285 (350)
                      |           +.|++++.|+ .|+||+...+.-   ..+..|.+.|+.++|.|.-    .+||+++.||+|.||-.+.
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn-~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDN-LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             ccccccCcccccceeeccCCcc-ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence            5           6799999996 999999998642   3366789999999999963    4689999999999997762


Q ss_pred             C----ceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          286 W----TSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       286 ~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                      .    +...+......+++++||..|..|++++ ++..++|.
T Consensus       243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            2    1122345667899999999999999876 33344443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.4e-21  Score=156.59  Aligned_cols=215  Identities=15%  Similarity=0.197  Sum_probs=159.6

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCC-----------------------------------------cee
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK-----------------------------------------DAC  137 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~-----------------------------------------~~~  137 (350)
                      ...|.++.|+++|.+|++++.|.+++|||.......                                         ...
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            456999999999999999999999999997531110                                         111


Q ss_pred             EecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecc-----cccccce-ecCCCCC-ceEEeee----
Q 018806          138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG-----AASFLGA-LSRGPGT-RWTLVDF----  206 (350)
Q Consensus       138 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~-~~~~~~~----  206 (350)
                      +.+.+|...|.+++.+|-+..+++++.|++|++||++...+...+...     ++.+.+- ++..... .+++.+.    
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d  173 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFD  173 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccC
Confidence            445689999999999999999999999999999999977666555433     2233332 2222222 3333321    


Q ss_pred             --------ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cC--C-CeEEEEEcCCCCEEEEEec
Q 018806          207 --------LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GF--G-GLSILKWSPTGDYFFAAKF  274 (350)
Q Consensus       207 --------~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~--~-~v~~~~~sp~g~~l~~~~~  274 (350)
                              +........+.+.|||||+.|+.++.. +.+++.|.-+|....... +.  + -....+|+||++++++|+.
T Consensus       174 kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  174 KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence                    111112578899999999999999988 599999999998655333 22  2 2357899999999999999


Q ss_pred             CCeEEEEeCCCCcee-cccc-CCCCeEEEEEcCCCCEEEEEE
Q 018806          275 DGTFYLWETNTWTSE-PWSS-TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       275 d~~v~iwd~~~~~~~-~~~~-~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ||+|++|++++++.. .+.+ +..++.++.|+|.-.++++++
T Consensus       253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence            999999999999873 4554 688899999999877777653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.91  E-value=7.7e-22  Score=167.67  Aligned_cols=216  Identities=19%  Similarity=0.323  Sum_probs=163.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+..+.|+|++++|++++.++.+++|++..  ++....+ ..|...+.++.|++++..+++++.++.+++||+..... 
T Consensus        52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  127 (289)
T cd00200          52 GPVRDVAASADGTYLASGSSDKTIRLWDLET--GECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-  127 (289)
T ss_pred             cceeEEEECCCCCEEEEEcCCCeEEEEEcCc--ccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-
Confidence            3578999999999999999999999999964  3344444 36788999999999955444444489999999973221 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                                              ...+..|. ..+.+++|+|+++++++++.+ |.|++||+++++... +..+...+.
T Consensus       128 ------------------------~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~  181 (289)
T cd00200         128 ------------------------LTTLRGHT-DWVNSVAFSPDGTFVASSSQD-GTIKLWDLRTGKCVATLTGHTGEVN  181 (289)
T ss_pred             ------------------------EEEeccCC-CcEEEEEEcCcCCEEEEEcCC-CcEEEEEccccccceeEecCccccc
Confidence                                    22344454 689999999998888888767 699999999776554 345667899


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCceee
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHL  336 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  336 (350)
                      +++|+|+++.+++++.++.|++||+++++... +..+...+.+++|+|++.+++++. ++.+.+|.+........+..|.
T Consensus       182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence            99999999999999999999999999887754 447888999999999988888776 5555555544333333455666


Q ss_pred             cccccceee
Q 018806          337 LPVDLPDIV  345 (350)
Q Consensus       337 ~~v~~~~~~  345 (350)
                      .++....+.
T Consensus       262 ~~i~~~~~~  270 (289)
T cd00200         262 NSVTSLAWS  270 (289)
T ss_pred             CcEEEEEEC
Confidence            566554443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.6e-22  Score=160.92  Aligned_cols=223  Identities=19%  Similarity=0.294  Sum_probs=149.2

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCc-----------------
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD-----------------  135 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~-----------------  135 (350)
                      ...+|.||.++                  |++++|+.||++||+++.|+.|+||++.....+.                 
T Consensus        78 ~~~~LKgH~~~------------------vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~  139 (420)
T KOG2096|consen   78 NVSVLKGHKKE------------------VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV  139 (420)
T ss_pred             hhhhhhccCCc------------------eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEE
Confidence            36777777655                  9999999999999999999999999986321111                 


Q ss_pred             -----------------eeE----------------------ecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806          136 -----------------ACI----------------------LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       136 -----------------~~~----------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                                       ++.                      +...|.-.|.++-...++..+.+++.|.+|.+|++. +
T Consensus       140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence                             000                      000122233333444444555666667888888887 5


Q ss_pred             CCCceeecc-------cccccceec----CCCCCc-eE-------------EeeeccCCCCCceeeEEECCCCCeEEEEE
Q 018806          177 GNAASVRSG-------AASFLGALS----RGPGTR-WT-------------LVDFLRSQNGEQITALSWGPDGRYLASAS  231 (350)
Q Consensus       177 ~~~~~~~~~-------~~~~~~~~~----~~~~~~-~~-------------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  231 (350)
                      +....+.+.       ..++.+.|.    +.++-+ |.             -...++||. ..|..++|+++.+.+++.+
T Consensus       219 q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r~vtvS  297 (420)
T KOG2096|consen  219 QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTRAVTVS  297 (420)
T ss_pred             ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcceeEEEe
Confidence            544444332       122222211    111111 11             112578886 7999999999999999999


Q ss_pred             eCCCeEEEEeCCCC----Cc--------eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc--ccCCCC
Q 018806          232 YESSSFTIWDVAQG----LG--------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGF  297 (350)
Q Consensus       232 ~d~g~i~iwd~~~~----~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~  297 (350)
                      .| |++++||++-.    +-        .++....+....+.++|+|+.||.+. ...+++|..++++....  ..|...
T Consensus       298 kD-G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~  375 (420)
T KOG2096|consen  298 KD-GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTT  375 (420)
T ss_pred             cC-CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCc
Confidence            99 79999998642    11        11112234456899999999887654 56899999999887543  368899


Q ss_pred             eEEEEEcCCCCEEEEEECCC
Q 018806          298 VTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~~~~  317 (350)
                      |++++|+++|++++++++.-
T Consensus       376 Is~is~~~~g~~~atcGdr~  395 (420)
T KOG2096|consen  376 ISSISYSSDGKYIATCGDRY  395 (420)
T ss_pred             eeeEEecCCCcEEeeeccee
Confidence            99999999999999886544

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=4.4e-22  Score=179.13  Aligned_cols=193  Identities=14%  Similarity=0.193  Sum_probs=140.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccC--------CCCCce--eEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEE
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYED--------SEGKDA--CILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICI  170 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~--------~~~~~~--~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i  170 (350)
                      |+....++++..+++++.+.....|+...        ..++..  .....+|.+.|.+++|+| +++.|++++.|++|++
T Consensus        23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI  102 (493)
T PTZ00421         23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG  102 (493)
T ss_pred             cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence            44445555655555555555555565321        111111  112357999999999999 7778888888999999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      ||+...+.....                  ......+.+|. ..|.+++|+|++ ..|++++.| |+|++||+++++...
T Consensus       103 Wdi~~~~~~~~~------------------~~~l~~L~gH~-~~V~~l~f~P~~~~iLaSgs~D-gtVrIWDl~tg~~~~  162 (493)
T PTZ00421        103 WGIPEEGLTQNI------------------SDPIVHLQGHT-KKVGIVSFHPSAMNVLASAGAD-MVVNVWDVERGKAVE  162 (493)
T ss_pred             EecCCCcccccc------------------CcceEEecCCC-CcEEEEEeCcCCCCEEEEEeCC-CEEEEEECCCCeEEE
Confidence            999743321110                  01234577886 799999999985 688999999 699999999887654


Q ss_pred             -eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCC-eEEEEEcCCCCEEEEEE
Q 018806          250 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGF-VTGATWDPEGRMILLAF  314 (350)
Q Consensus       250 -~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~-v~~~~~s~~g~~l~~~~  314 (350)
                       +..|...|.+++|+|+|.+|++++.|++|++||+++++.. .+..|.+. +..+.|.+++..|++++
T Consensus       163 ~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G  230 (493)
T PTZ00421        163 VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG  230 (493)
T ss_pred             EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence             4457788999999999999999999999999999998873 45566554 45788999988887765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.9e-22  Score=157.54  Aligned_cols=198  Identities=21%  Similarity=0.304  Sum_probs=154.0

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC--eEEEEecCCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~v~iwd~~~~  176 (350)
                      ...+++++.  ++.++|+|+.|-+|+|||+..  ......+ ..|.+.|+++.|.++-.  +|++++.||.|.+|+..  
T Consensus        43 ~~sitavAV--s~~~~aSGssDetI~IYDm~k--~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~--  115 (362)
T KOG0294|consen   43 AGSITALAV--SGPYVASGSSDETIHIYDMRK--RKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG--  115 (362)
T ss_pred             ccceeEEEe--cceeEeccCCCCcEEEEeccc--hhhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcC--
Confidence            445888887  579999999999999999953  4444444 36899999999998844  89999999999999998  


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG  256 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~  256 (350)
                                             .|.+...+++|. +.|+.++.+|.|+.-++.+.| +.+++||+-.|+...+..-...
T Consensus       116 -----------------------~W~~~~slK~H~-~~Vt~lsiHPS~KLALsVg~D-~~lr~WNLV~Gr~a~v~~L~~~  170 (362)
T KOG0294|consen  116 -----------------------SWELLKSLKAHK-GQVTDLSIHPSGKLALSVGGD-QVLRTWNLVRGRVAFVLNLKNK  170 (362)
T ss_pred             -----------------------CeEEeeeecccc-cccceeEecCCCceEEEEcCC-ceeeeehhhcCccceeeccCCc
Confidence                                   888899999998 679999999999999999999 6999999987754332222222


Q ss_pred             eEEEEEcC---------------------------------------CCCEEEEEecCCeEEEEeCCCCce-eccccCCC
Q 018806          257 LSILKWSP---------------------------------------TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSG  296 (350)
Q Consensus       257 v~~~~~sp---------------------------------------~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~  296 (350)
                      ...+.|+|                                       ++..|++|.+|+.|.+||.++..+ ..+..|..
T Consensus       171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~  250 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN  250 (362)
T ss_pred             ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh
Confidence            22233333                                       345677788888999999988666 45678999


Q ss_pred             CeEEEEE--cCCCCEEEEEE-CCCeEEEEEEeCCC
Q 018806          297 FVTGATW--DPEGRMILLAF-AGSLTLGSIHFASK  328 (350)
Q Consensus       297 ~v~~~~~--s~~g~~l~~~~-~~~~~~~~~~~~~~  328 (350)
                      .|-++.+  .|++.+|++++ ++.+.+|.+++..+
T Consensus       251 RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  251 RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             heeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            9999884  56788888887 66677777777644

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=1.2e-21  Score=177.25  Aligned_cols=176  Identities=14%  Similarity=0.179  Sum_probs=133.8

Q ss_pred             EECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC-CCeEEEEecCCcEEEEecCCCCCC-ceeecccccccceec
Q 018806          117 ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNA-ASVRSGAASFLGALS  194 (350)
Q Consensus       117 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~  194 (350)
                      |+.++.+++|+...  ......+ .+|.+.|.+++|+|+ +..+++++.|++|+|||+...... ..+.           
T Consensus        50 GG~~gvI~L~~~~r--~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-----------  115 (568)
T PTZ00420         50 GGLIGAIRLENQMR--KPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-----------  115 (568)
T ss_pred             CCceeEEEeeecCC--CceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-----------
Confidence            45678899999853  3333333 589999999999997 567778888999999999743221 1000           


Q ss_pred             CCCCCceEEeeeccCCCCCceeeEEECCCCCeE-EEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe
Q 018806          195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  273 (350)
                             .....+.+|. ..|.+++|+|++..+ ++++.| |+|++||+++++......+...|.+++|+|+|++|++++
T Consensus       116 -------~p~~~L~gH~-~~V~sVaf~P~g~~iLaSgS~D-gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s  186 (568)
T PTZ00420        116 -------DPQCILKGHK-KKISIIDWNPMNYYIMCSSGFD-SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC  186 (568)
T ss_pred             -------cceEEeecCC-CcEEEEEECCCCCeEEEEEeCC-CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe
Confidence                   0123456775 699999999998865 677888 699999999987665555677899999999999999999


Q ss_pred             cCCeEEEEeCCCCce-eccccCCCCeE-----EEEEcCCCCEEEEEEC
Q 018806          274 FDGTFYLWETNTWTS-EPWSSTSGFVT-----GATWDPEGRMILLAFA  315 (350)
Q Consensus       274 ~d~~v~iwd~~~~~~-~~~~~~~~~v~-----~~~~s~~g~~l~~~~~  315 (350)
                      .|+.|+|||+++++. ..+..|.+.+.     ...|++++.+|++++.
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~  234 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF  234 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence            999999999999887 44667776543     2345689999988773

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.3e-22  Score=174.30  Aligned_cols=193  Identities=15%  Similarity=0.199  Sum_probs=160.7

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEecCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~  176 (350)
                      |..-+++++.||...+++++|.|-+|++||++.  .-...+.+.+|..-|.+++|+|.+. .+++++-|++|+||.+..+
T Consensus        96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~  173 (794)
T KOG0276|consen   96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP  173 (794)
T ss_pred             cccceeeeeecCCCCeEEecCCccEEEEeeccC--ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence            355799999999999999999999999999973  3333444569999999999999754 5666666999999999843


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC--CeEEEEEeCCCeEEEEeCCCCCcee-eeec
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRG  253 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~  253 (350)
                      ..                         ..++.+|. ..|.++.+-+.|  .+|++++.|. +|++||.++..+.. +.+|
T Consensus       174 ~~-------------------------nfTl~gHe-kGVN~Vdyy~~gdkpylIsgaDD~-tiKvWDyQtk~CV~TLeGH  226 (794)
T KOG0276|consen  174 HP-------------------------NFTLEGHE-KGVNCVDYYTGGDKPYLISGADDL-TIKVWDYQTKSCVQTLEGH  226 (794)
T ss_pred             CC-------------------------ceeeeccc-cCcceEEeccCCCcceEEecCCCc-eEEEeecchHHHHHHhhcc
Confidence            32                         34577886 799999998754  6899999995 99999999999876 4568


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                      ...|..++|+|.=.++++|++||+|+||+..+.+.. .+....+.+++++-.+.++.+++|.|....
T Consensus       227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV  293 (794)
T ss_pred             cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence            899999999999999999999999999999998874 344566789999999998899988866543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.90  E-value=1.5e-21  Score=188.63  Aligned_cols=191  Identities=14%  Similarity=0.187  Sum_probs=151.1

Q ss_pred             cCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..|.+++|++ ++++||+++.||+|++||+..  ++....+ .+|.+.|++++|+| ++..+++++.|++|++||+....
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            3578899987 478999999999999999953  4444444 58999999999997 66678888889999999998433


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC-CCCCeEEEEEeCCCeEEEEeCCCCCc--eeeeecC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLG--TPIRRGF  254 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~~~  254 (350)
                      .                         ...+..+  ..+.++.|+ ++|.+|++++.| |.|++||++....  ..+..|.
T Consensus       610 ~-------------------------~~~~~~~--~~v~~v~~~~~~g~~latgs~d-g~I~iwD~~~~~~~~~~~~~h~  661 (793)
T PLN00181        610 S-------------------------IGTIKTK--ANICCVQFPSESGRSLAFGSAD-HKVYYYDLRNPKLPLCTMIGHS  661 (793)
T ss_pred             E-------------------------EEEEecC--CCeEEEEEeCCCCCEEEEEeCC-CeEEEEECCCCCccceEecCCC
Confidence            2                         2223322  478899995 579999999999 6999999987652  3455688


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC------c-eeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW------T-SEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~------~-~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                      ..|.++.|. ++.+|++++.|++|++||++.+      + ...+.+|...+..++|+|++++|++++ ++.+.+|.
T Consensus       662 ~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        662 KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            899999997 7889999999999999999753      2 245668888999999999999999887 44444444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.90  E-value=1.2e-23  Score=170.27  Aligned_cols=198  Identities=16%  Similarity=0.285  Sum_probs=159.6

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (350)
                      ....|.||++.                  |.|+.|  +.+.|++|+.|.+|+|||+++  ++.+..+ .+|...|..+.|
T Consensus       229 c~~~L~GHtGS------------------VLCLqy--d~rviisGSSDsTvrvWDv~t--ge~l~tl-ihHceaVLhlrf  285 (499)
T KOG0281|consen  229 CLKILTGHTGS------------------VLCLQY--DERVIVSGSSDSTVRVWDVNT--GEPLNTL-IHHCEAVLHLRF  285 (499)
T ss_pred             HHHhhhcCCCc------------------EEeeec--cceEEEecCCCceEEEEeccC--CchhhHH-hhhcceeEEEEE
Confidence            35777888777                  666666  456999999999999999964  7776666 479999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe
Q 018806          153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       153 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  232 (350)
                      +.  +.+++++.|.++.+||+..+...                      .+...+.||. ..|..+.|+  .++|++++.
T Consensus       286 ~n--g~mvtcSkDrsiaVWdm~sps~i----------------------t~rrVLvGHr-AaVNvVdfd--~kyIVsASg  338 (499)
T KOG0281|consen  286 SN--GYMVTCSKDRSIAVWDMASPTDI----------------------TLRRVLVGHR-AAVNVVDFD--DKYIVSASG  338 (499)
T ss_pred             eC--CEEEEecCCceeEEEeccCchHH----------------------HHHHHHhhhh-hheeeeccc--cceEEEecC
Confidence            84  58999999999999999854421                      1234578886 799999985  569999999


Q ss_pred             CCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEE
Q 018806          233 ESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l  310 (350)
                      |. +|++|++.+++... +.+|..+|-|+.+  .|+++++|+.|.+|++||+..|++. .+.+|+.-|.++.|.  .+.+
T Consensus       339 DR-TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krI  413 (499)
T KOG0281|consen  339 DR-TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRI  413 (499)
T ss_pred             Cc-eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Ccee
Confidence            95 99999999998876 5568889988877  6899999999999999999999984 577999999999996  5677


Q ss_pred             EEEE-CCCeEEEEEEe
Q 018806          311 LLAF-AGSLTLGSIHF  325 (350)
Q Consensus       311 ~~~~-~~~~~~~~~~~  325 (350)
                      ++|. ++.+.+|.+..
T Consensus       414 VSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQA  429 (499)
T ss_pred             eeccccceEEEEeccc
Confidence            7775 55555554443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=9.7e-23  Score=168.38  Aligned_cols=210  Identities=19%  Similarity=0.271  Sum_probs=163.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +|+++.|.++++++++++.|+.+++|+++.  .+...++ .+|.+.|+++.|.-....+++++.|.++++||+....+..
T Consensus       221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  221 NITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             CcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence            699999999999999999999999999964  5555555 4799999999998775557888889999999999766665


Q ss_pred             eeeccccccc------ceecCCCCCceEEeeeccC------CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce
Q 018806          181 SVRSGAASFL------GALSRGPGTRWTLVDFLRS------QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  248 (350)
Q Consensus       181 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~  248 (350)
                      .+..+.....      ..++.-.+.+++.|+.-.+      .-.+.|+++..+++|..|.+++.|+ ++.+.|+++.+..
T Consensus       298 t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-tl~viDlRt~eI~  376 (459)
T KOG0288|consen  298 TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-TLKVIDLRTKEIR  376 (459)
T ss_pred             cccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-ceeeeecccccEE
Confidence            5554432211      1133334556666652111      1136899999999999999999996 9999999998766


Q ss_pred             eeeec-----CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cc--cCCCCeEEEEEcCCCCEEEEEE
Q 018806          249 PIRRG-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       249 ~~~~~-----~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .....     ....+.++|||++.|+++|+.||.|+||++.++++.. +.  .....|++++|+|.|..|+.+.
T Consensus       377 ~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  377 QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            54432     2347889999999999999999999999999999843 33  2223699999999999999775

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.7e-23  Score=182.46  Aligned_cols=220  Identities=17%  Similarity=0.245  Sum_probs=160.7

Q ss_pred             CeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEE-EEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~  178 (350)
                      .+..|.|+. +.++||+++..|.|.+||+...........+..|...++++.|++....++ +++.||+|++||++....
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            466778874 458999999999999999974322333334468999999999998755554 555599999999995544


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc--eeeeecCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~~~~~  256 (350)
                      ...                         +.+.. ..|.+++|+|.....+++..|+|.+.+||++....  ..+..|.++
T Consensus       169 ~~t-------------------------~~~nS-ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp  222 (839)
T KOG0269|consen  169 KST-------------------------FRSNS-ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP  222 (839)
T ss_pred             ccc-------------------------ccccc-hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc
Confidence            333                         33333 68999999996444444445558999999997754  345679999


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee--ccccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEEEeCCC--CC
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAF--AGSLTLGSIHFASK--PP  330 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~--~~  330 (350)
                      |.++.|+|++.+||+|+.|+.|+|||+.+.+..  .......++..+.|-|+.++.+..|  -++..|..|++...  |.
T Consensus       223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~  302 (839)
T KOG0269|consen  223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY  302 (839)
T ss_pred             eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence            999999999999999999999999999877663  3345677899999999988755444  33444445544432  22


Q ss_pred             -CCceeecccccceeec
Q 018806          331 -SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       331 -~~~~~~~~v~~~~~~~  346 (350)
                       ++..|...++...+.+
T Consensus       303 ~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  303 ATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             eeeeccCccccceeccC
Confidence             6667777776665543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.90  E-value=5.7e-22  Score=162.27  Aligned_cols=190  Identities=20%  Similarity=0.349  Sum_probs=153.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCC----------------------CCceeEecCCCCCCeeEEEEeeCCCe
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----------------------GKDACILTSDSQRDVKVLEWRPNGGR  158 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~----------------------~~~~~~~~~~~~~~v~~~~~sp~~~~  158 (350)
                      .|.+|+..++|..+++|+.|.++.||+.....                      .+.+.....+|..+|.++.|++. ..
T Consensus       195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-~v  273 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-TV  273 (423)
T ss_pred             ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC-Cc
Confidence            49999999999999999999999999932100                      01122344589999999999985 78


Q ss_pred             EEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEE
Q 018806          159 SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFT  238 (350)
Q Consensus       159 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~  238 (350)
                      +++++.|.+|+.||+..++....+...                           ....++..+|..+.|++++.|. .|+
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~~---------------------------ksl~~i~~~~~~~Ll~~gssdr-~ir  325 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTTN---------------------------KSLNCISYSPLSKLLASGSSDR-HIR  325 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeecC---------------------------cceeEeecccccceeeecCCCC-cee
Confidence            888999999999999977765443332                           5889999999999999999995 999


Q ss_pred             EEeCCCCCc----eeeeecCCCeEEEEEcCCCCE-EEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEE
Q 018806          239 IWDVAQGLG----TPIRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       239 iwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~-l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~  311 (350)
                      +||-+++..    ..+.+|...|.++.|+|...+ |++++.|+++++||+++.+.  ..+.+|...|.++.|+. +..|+
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~Iv  404 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIV  404 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEE
Confidence            999998753    346678999999999997655 68999999999999998773  56778999999999986 66777


Q ss_pred             EEE-CCCeEE
Q 018806          312 LAF-AGSLTL  320 (350)
Q Consensus       312 ~~~-~~~~~~  320 (350)
                      +|+ |+.+++
T Consensus       405 SGGaD~~l~i  414 (423)
T KOG0313|consen  405 SGGADNKLRI  414 (423)
T ss_pred             eccCcceEEE
Confidence            775 444433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=1e-21  Score=180.32  Aligned_cols=227  Identities=18%  Similarity=0.258  Sum_probs=141.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCC--C---CC----------ceeEecCCCCCCeeEEEEeeCCCeEEEEe
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--E---GK----------DACILTSDSQRDVKVLEWRPNGGRSLSVG  163 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~--~---~~----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  163 (350)
                      ...|+|+.|+|||++||+|+.|+.|.||.....  .   +.          .......+|...|..++|+|++..+++++
T Consensus        69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS  148 (942)
T ss_pred             cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence            345999999999999999999999999998620  0   00          12233458999999999999988888899


Q ss_pred             cCCcEEEEecCCCCCCceeecccccccceecCCC----------CCceEEeeecc--------CCC-----CCceeeEEE
Q 018806          164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGP----------GTRWTLVDFLR--------SQN-----GEQITALSW  220 (350)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--------~~~-----~~~v~~~~~  220 (350)
                      -|++|.||+..+.+.. .+..++.+.+..+++++          |..+.+|++..        ++.     ......+.|
T Consensus       149 ~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW  227 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW  227 (942)
T ss_pred             ccceEEEEccccceee-eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence            9999999999844222 11112112222211111          12222333111        000     012233444


Q ss_pred             CCCCCeEEEEEeCC---CeEEEEeCCCCC-ceeeeecCCCeEEEEEcCC-----CC------------EEEEEecCCeEE
Q 018806          221 GPDGRYLASASYES---SSFTIWDVAQGL-GTPIRRGFGGLSILKWSPT-----GD------------YFFAAKFDGTFY  279 (350)
Q Consensus       221 sp~g~~l~~~~~d~---g~i~iwd~~~~~-~~~~~~~~~~v~~~~~sp~-----g~------------~l~~~~~d~~v~  279 (350)
                      ||||++|++...-+   -++.|.+-.+-+ ...+.+|.+++.+++|+|.     .+            .+|+|+.|++|.
T Consensus       228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence            44444444432110   134444433323 2346678899999999971     11            568999999999


Q ss_pred             EEeCCCCceec--cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          280 LWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       280 iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ||.....+..-  ..-....|.+++|+|||..|++++ .++.+..+++..
T Consensus       308 VW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS-~DGtV~~i~Fee  356 (942)
T KOG0973|consen  308 VWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS-LDGTVALIHFEE  356 (942)
T ss_pred             EEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe-cCCeEEEEEcch
Confidence            99986655522  113456899999999999998665 334667777664

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=4.2e-22  Score=166.59  Aligned_cols=200  Identities=17%  Similarity=0.313  Sum_probs=151.4

Q ss_pred             eeEEEEecCC-CEEEEEECCCeEEEEEccCCCC----CceeEecCCCCCCeeEEEEeeCCCeEEE-EecCCcEEEEecCC
Q 018806          102 LQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEG----KDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSY  175 (350)
Q Consensus       102 V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~  175 (350)
                      =++++|++.. -.|++++.|++|++||+.....    ......+.+|...|..++|++-...+++ ++.|+.+.|||++.
T Consensus       180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~  259 (422)
T KOG0264|consen  180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS  259 (422)
T ss_pred             ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence            5668999865 5788999999999999975433    2334555689999999999997665555 55579999999995


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCc--eeeee
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG--TPIRR  252 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~  252 (350)
                      .  ...                     ......+|. +.+.+++|+|- +..||+++.| ++|++||++....  ..+..
T Consensus       260 ~--~~~---------------------~~~~~~ah~-~~vn~~~fnp~~~~ilAT~S~D-~tV~LwDlRnL~~~lh~~e~  314 (422)
T KOG0264|consen  260 N--TSK---------------------PSHSVKAHS-AEVNCVAFNPFNEFILATGSAD-KTVALWDLRNLNKPLHTFEG  314 (422)
T ss_pred             C--CCC---------------------CcccccccC-CceeEEEeCCCCCceEEeccCC-CcEEEeechhcccCceeccC
Confidence            2  111                     112245665 79999999995 5567788889 6999999998654  34567


Q ss_pred             cCCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCceec------------c---ccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          253 GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP------------W---SSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       253 ~~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~~------------~---~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      |...|.++.|+|. ...||+++.|+.+.|||+..-...+            +   -+|...|..+.|+|+..+++++...
T Consensus       315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae  394 (422)
T KOG0264|consen  315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE  394 (422)
T ss_pred             CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence            8899999999996 4567889999999999996422211            1   2788899999999999999988766


Q ss_pred             CeEEEEEEeC
Q 018806          317 SLTLGSIHFA  326 (350)
Q Consensus       317 ~~~~~~~~~~  326 (350)
                      +..+..|++.
T Consensus       395 DN~LqIW~~s  404 (422)
T KOG0264|consen  395 DNILQIWQMA  404 (422)
T ss_pred             CceEEEeecc
Confidence            6666666654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=5.9e-22  Score=175.05  Aligned_cols=225  Identities=10%  Similarity=0.108  Sum_probs=166.9

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+.+..|-|.++++++|...|.+.++|+..  ... ......|++.|++++.+||+..+++++.|.+|++||+...... 
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS--~~l-~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-  489 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLAS--ASL-VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-  489 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeeh--hhh-hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc-
Confidence            356667777777777777777777777753  332 3333479999999999999999999999999999998722110 


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeeeecCCCeEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSI  259 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~~~~~~v~~  259 (350)
                         .++....  +      .+...+++.-  ...|.++++||||++|+.+-.|+ +|++|-+++-+. ..+.+|.-+|.|
T Consensus       490 ---~gt~~k~--l------sl~~~rtLel--~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLPV~s  555 (888)
T KOG0306|consen  490 ---PGTQKKV--L------SLKHTRTLEL--EDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLPVLS  555 (888)
T ss_pred             ---Cccccee--e------eeccceEEec--cccEEEEEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccceeE
Confidence               0000000  0      0001122222  25899999999999999999996 999999998765 457889999999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe--CCCCCCCceee
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF--ASKPPSLDAHL  336 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~  336 (350)
                      +..|||++.+++|+.|++|+||-++-|.+ +.+.+|...|.++.|-|+..++. +++++..+..|+-  ...-..+.+|.
T Consensus       556 mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF-t~gKD~kvKqWDg~kFe~iq~L~~H~  634 (888)
T KOG0306|consen  556 MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF-TCGKDGKVKQWDGEKFEEIQKLDGHH  634 (888)
T ss_pred             EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE-EecCcceEEeechhhhhhheeeccch
Confidence            99999999999999999999999999999 56889999999999999665555 5544445555532  23344778888


Q ss_pred             ccccccee
Q 018806          337 LPVDLPDI  344 (350)
Q Consensus       337 ~~v~~~~~  344 (350)
                      ..|.....
T Consensus       635 ~ev~cLav  642 (888)
T KOG0306|consen  635 SEVWCLAV  642 (888)
T ss_pred             heeeeeEE
Confidence            87766544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=2.1e-22  Score=161.93  Aligned_cols=210  Identities=16%  Similarity=0.165  Sum_probs=168.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +|.|+.||.|...||+|+.||.|++|.+.+  |.++..+...|...|+++.|+.|+.++++++.|.+++|.-+..++.  
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~t--G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~--  340 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIET--GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC--  340 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEec--chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh--
Confidence            799999999999999999999999999954  8888888778999999999999999999999999999998874443  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee---cCCCe
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGL  257 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~~~~v  257 (350)
                                             .+.+++|. +.|+...|++||.++++++.| |+|++|+.++.++...+.   .+.+|
T Consensus       341 -----------------------LKEfrGHs-Syvn~a~ft~dG~~iisaSsD-gtvkvW~~KtteC~~Tfk~~~~d~~v  395 (508)
T KOG0275|consen  341 -----------------------LKEFRGHS-SYVNEATFTDDGHHIISASSD-GTVKVWHGKTTECLSTFKPLGTDYPV  395 (508)
T ss_pred             -----------------------HHHhcCcc-ccccceEEcCCCCeEEEecCC-ccEEEecCcchhhhhhccCCCCcccc
Confidence                                   45578887 799999999999999999999 799999999998865443   34567


Q ss_pred             EEEEEcC-CCCEEEEEecCCeEEEEeCCCCceeccc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC--CCC
Q 018806          258 SILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPS  331 (350)
Q Consensus       258 ~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~--~~~  331 (350)
                      .++-.-| +-..++++...++|+|.++...-.+.+.   ...+...++..||.|.++++.+.+ ..+|.+.+.+.  ..+
T Consensus       396 nsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED-~vlYCF~~~sG~LE~t  474 (508)
T KOG0275|consen  396 NSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED-GVLYCFSVLSGKLERT  474 (508)
T ss_pred             eeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC-cEEEEEEeecCceeee
Confidence            7777666 4567888999999999999765444443   234556778899999999876533 34566655433  335


Q ss_pred             Cceeecccc
Q 018806          332 LDAHLLPVD  340 (350)
Q Consensus       332 ~~~~~~~v~  340 (350)
                      +..|..-+-
T Consensus       475 l~VhEkdvI  483 (508)
T KOG0275|consen  475 LPVHEKDVI  483 (508)
T ss_pred             eeccccccc
Confidence            566655443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6.9e-22  Score=166.64  Aligned_cols=192  Identities=15%  Similarity=0.143  Sum_probs=158.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~~  179 (350)
                      .|+++.|-.||++||.|...|.|+|+|..   .+.+......|..+|..+.|+|+++.+++.++| +.+++||+....  
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k---~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--  144 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMK---SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--  144 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEeccc---cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--
Confidence            48999999999999999999999999963   233344446899999999999998888887775 888999998322  


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCC-CceeeeecCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQG-LGTPIRRGFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~-~~~~~~~~~~~v  257 (350)
                                             ..-.+.+|. ..|.+.+|+|-. ..+++|+.| |+|++||++.. .......|..+|
T Consensus       145 -----------------------v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYD-g~vrl~DtR~~~~~v~elnhg~pV  199 (487)
T KOG0310|consen  145 -----------------------VQAELSGHT-DYVRCGDISPANDHIVVTGSYD-GKVRLWDTRSLTSRVVELNHGCPV  199 (487)
T ss_pred             -----------------------EEEEecCCc-ceeEeeccccCCCeEEEecCCC-ceEEEEEeccCCceeEEecCCCce
Confidence                                   123477887 599999999964 477889999 79999999987 445566788999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce-ec-cccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EP-WSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~-~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      ..+.+-|.|..|++++ ...|+|||+-+|.. .. ...|...|+|+.+..++..|++++ |+...++..
T Consensus       200 e~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  200 ESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             eeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence            9999999999999887 56799999996655 33 445999999999999999999988 777777773

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=7.3e-22  Score=157.14  Aligned_cols=214  Identities=15%  Similarity=0.174  Sum_probs=144.9

Q ss_pred             ccCeeEEEEecC-CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~-g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +..|.+++|||. ..+++.+|.|++||+|++... +.........|.++|.+++|+.||..+++++.|+.+++||+..++
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            446999999994 456668899999999999743 444444445799999999999999999999999999999999553


Q ss_pred             CCceeec-------ccccccce----ecCCCCCceEEeeeccCC------------------------------------
Q 018806          178 NAASVRS-------GAASFLGA----LSRGPGTRWTLVDFLRSQ------------------------------------  210 (350)
Q Consensus       178 ~~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~~~~------------------------------------  210 (350)
                       ...+..       ..+..-..    ...+.|..++.|++-...                                    
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence             222211       11111111    223344455555521100                                    


Q ss_pred             ------------CCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc---eeeeecC---------CCeEEEEEcCCC
Q 018806          211 ------------NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGF---------GGLSILKWSPTG  266 (350)
Q Consensus       211 ------------~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~---~~~~~~~---------~~v~~~~~sp~g  266 (350)
                                  ..-.+++++..+|.+..+.|+-+ |.+.+..++.+..   ..+..|.         ..|.+++|+|.-
T Consensus       185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE-Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h  263 (347)
T KOG0647|consen  185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE-GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH  263 (347)
T ss_pred             CCcchhhhhcCcccceeeEEEEEecCCceEeeeec-ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence                        01123455555555555555555 4666665555311   1222232         247789999998


Q ss_pred             CEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          267 DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       267 ~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      ..|++++.||++.+||-+.... .....|..+|++.+|+.+|.+++.+.+
T Consensus       264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            8999999999999999877655 455788999999999999999999853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.6e-21  Score=164.45  Aligned_cols=188  Identities=13%  Similarity=0.189  Sum_probs=151.0

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEE-EecCCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~  176 (350)
                      ..+|..+.|+|++ +.+++|+.|+.+++||+++  ... .....+|...|.+.+|+|-..++++ ++.||+|++||++..
T Consensus       110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--AYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             cCceeEEEecccCCeEEEecCCCceEEEEEcCC--cEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            4569999999865 6777888999999999964  332 3333589999999999998675555 555999999999854


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-ee-eeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP-IRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~-~~~~~  254 (350)
                      .. ..                       .++ . ++.+|..+.+-|.|..|++++..  .|++||+-+|.. .. +..|.
T Consensus       187 ~~-~v-----------------------~el-n-hg~pVe~vl~lpsgs~iasAgGn--~vkVWDl~~G~qll~~~~~H~  238 (487)
T KOG0310|consen  187 TS-RV-----------------------VEL-N-HGCPVESVLALPSGSLIASAGGN--SVKVWDLTTGGQLLTSMFNHN  238 (487)
T ss_pred             Cc-ee-----------------------EEe-c-CCCceeeEEEcCCCCEEEEcCCC--eEEEEEecCCceehhhhhccc
Confidence            31 11                       111 1 24699999999999999999876  799999996644 33 33489


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ..|+|+++..++..|++++-|+.|++||+.+.+...-....++|.+++.+|+++.+++|..+.
T Consensus       239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence            999999999999999999999999999998888876667788999999999999999986444

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.89  E-value=3.5e-22  Score=162.39  Aligned_cols=191  Identities=16%  Similarity=0.219  Sum_probs=159.1

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      |..+++|+--.||.+++.|+.|+.||++.  .+.+..+ .+|-..|.+++.+|.-..+++++.|.+++|||++....   
T Consensus       196 vr~vavS~rHpYlFs~gedk~VKCwDLe~--nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---  269 (460)
T KOG0285|consen  196 VRGVAVSKRHPYLFSAGEDKQVKCWDLEY--NKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---  269 (460)
T ss_pred             eeeeeecccCceEEEecCCCeeEEEechh--hhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccce---
Confidence            89999999999999999999999999964  4444444 58999999999999988999999999999999995433   


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  260 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~  260 (350)
                                            +..+.||. ..|.++.+.|-...+++++.| ++|++||++.++... +..|+..+.++
T Consensus       270 ----------------------V~~l~GH~-~~V~~V~~~~~dpqvit~S~D-~tvrlWDl~agkt~~tlt~hkksvral  325 (460)
T KOG0285|consen  270 ----------------------VHVLSGHT-NPVASVMCQPTDPQVITGSHD-STVRLWDLRAGKTMITLTHHKKSVRAL  325 (460)
T ss_pred             ----------------------EEEecCCC-CcceeEEeecCCCceEEecCC-ceEEEeeeccCceeEeeecccceeeEE
Confidence                                  55688887 799999999988899999999 599999999998654 56678899999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECC-CeEEEEEE
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIH  324 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~~~~~~~  324 (350)
                      +.+|....+|+++.|. |+-|++..+.. ..+.+|..-|..++...||-++. |+++ .+..|+|+
T Consensus       326 ~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~-G~dng~~~fwdwk  389 (460)
T KOG0285|consen  326 CLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS-GGDNGSIMFWDWK  389 (460)
T ss_pred             ecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceEEE-cCCceEEEEEecC
Confidence            9999998889888765 99999998887 45778999999999998875544 5544 34444443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=161.41  Aligned_cols=194  Identities=15%  Similarity=0.267  Sum_probs=162.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+.++...|....+++|+.|..+.++|...  ++ +..+..+|...|+.+.|+|+...+++++.|..|+||.......+.
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s--~q-~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~  297 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPS--NQ-ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT  297 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecch--hh-hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence            688888888878899999999999999753  33 344457999999999999997788888889999999988544322


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC---CCe
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGL  257 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~---~~v  257 (350)
                      .                         ...| +++|+.+..+|.|.||++++.| |++.+.|++++.......+.   -.+
T Consensus       298 ~-------------------------~~~h-~~~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g~~lt~vs~~~s~v~~  350 (506)
T KOG0289|consen  298 S-------------------------SRPH-EEPVTGLSLHPTGEYLLSASND-GTWAFSDISSGSQLTVVSDETSDVEY  350 (506)
T ss_pred             c-------------------------cccc-cccceeeeeccCCcEEEEecCC-ceEEEEEccCCcEEEEEeecccccee
Confidence            2                         3344 4799999999999999999999 69999999999877665553   458


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEEE
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIH  324 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~~~~  324 (350)
                      ++.+|+|||.++.+|..|+.|+|||+.++.. ..+.+|.++|..++|+.+|-||+++++++ +.+|+++
T Consensus       351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence            8999999999999999999999999998876 56889999999999999999999999665 4444444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=3e-21  Score=172.96  Aligned_cols=194  Identities=16%  Similarity=0.189  Sum_probs=145.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEE-EecCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~~~  178 (350)
                      .+|.+++||.+ ++|++++.|+++++|++..  ..+++.+  .|..-|+|++|+|-+.+++. ++-|++++||++...+ 
T Consensus       370 ~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~--~~CL~~F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-  443 (712)
T KOG0283|consen  370 ADILDLSWSKN-NFLLSSSMDKTVRLWHPGR--KECLKVF--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-  443 (712)
T ss_pred             hhheecccccC-CeeEeccccccEEeecCCC--cceeeEE--ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe-
Confidence            35899999976 4788999999999999953  5555555  69999999999996555555 4559999999998322 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee---eeec--
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRG--  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~---~~~~--  253 (350)
                                            +..|..+.    .-|++++|+|||+..+.|+.+ |.+++|++...+...   +..+  
T Consensus       444 ----------------------Vv~W~Dl~----~lITAvcy~PdGk~avIGt~~-G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  444 ----------------------VVDWNDLR----DLITAVCYSPDGKGAVIGTFN-GYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             ----------------------eEeehhhh----hhheeEEeccCCceEEEEEec-cEEEEEEccCCeEEEeeeEeeccC
Confidence                                  11222222    589999999999999999999 899999998775432   1111  


Q ss_pred             ----CCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCce-eccccCC--CCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          254 ----FGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTS--GFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       254 ----~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                          ...|+.+.|.|.. ..|++.+.|..|+|||.++.+. ..+.++.  ..=....|+.||++|++++ .+..+|.|++
T Consensus       497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~  575 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKN  575 (712)
T ss_pred             ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cCceEEEEeC
Confidence                2369999999743 3577778899999999987776 3444332  2235678999999999988 4457888887


Q ss_pred             CC
Q 018806          326 AS  327 (350)
Q Consensus       326 ~~  327 (350)
                      ..
T Consensus       576 ~~  577 (712)
T KOG0283|consen  576 DS  577 (712)
T ss_pred             CC
Confidence            43

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.88  E-value=6.9e-21  Score=155.23  Aligned_cols=187  Identities=18%  Similarity=0.237  Sum_probs=152.0

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      |...|.+++.+|+.+++|+|+.|....||+..+  +.....+ .+|+..|+++.|+.+|..|++++.+|.|+||+..++.
T Consensus        63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~--ge~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST--GEFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             cCCceEEEEeCCCCceEEecCCCceEEEEEccC--CcceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence            456899999999999999999999999999964  6666666 4899999999999998888888889999999998655


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-CceeeeecCCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGG  256 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-~~~~~~~~~~~  256 (350)
                      ....+.                         .. ...+.-+.|+|.+..|++++.| |.+.+|.+.++ .+..+.+|..+
T Consensus       140 ~~~~~~-------------------------~e-~~dieWl~WHp~a~illAG~~D-GsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  140 EQWKLD-------------------------QE-VEDIEWLKWHPRAHILLAGSTD-GSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             eEEEee-------------------------cc-cCceEEEEecccccEEEeecCC-CcEEEEECCCcceeeEecCCCCC
Confidence            433322                         11 2578889999999999999999 79999999984 45556778899


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cc-cCCCCeEEEEEcCCCCEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +++=.|.|+|+.++++..||+|++||.+++...- +. .......++.++..+..++.|.
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            9999999999999999999999999999998732 22 2234456667777766665553

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=1.4e-21  Score=172.63  Aligned_cols=200  Identities=14%  Similarity=0.195  Sum_probs=164.7

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCC---CCceeEec------CCCCCCeeEEEEeeCCCeEEEEecCCc
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE---GKDACILT------SDSQRDVKVLEWRPNGGRSLSVGCKGG  167 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~---~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~d~~  167 (350)
                      .|...+++++.+||++.+++|+.|.+|++|++..-.   +.....+.      ..-...|.++++||||+.++++--|++
T Consensus       452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence            345679999999999999999999999999975311   11111111      123567999999999877777777999


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      |+||-++                         .++..-.+.||. -+|.++..|||++.+++++.|. +|++|-++=|.+
T Consensus       532 VkVyflD-------------------------tlKFflsLYGHk-LPV~smDIS~DSklivTgSADK-nVKiWGLdFGDC  584 (888)
T KOG0306|consen  532 VKVYFLD-------------------------TLKFFLSLYGHK-LPVLSMDISPDSKLIVTGSADK-NVKIWGLDFGDC  584 (888)
T ss_pred             EEEEEec-------------------------ceeeeeeecccc-cceeEEeccCCcCeEEeccCCC-ceEEeccccchh
Confidence            9999988                         334455688997 6999999999999999999996 999999998887


Q ss_pred             ee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          248 TP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       248 ~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      .. ++.|+..|.++.|.|+...+++++.|+.|+-||-+..+. +.+.+|...|++++.+|+|.++++++    .+..+++
T Consensus       585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s----hD~sIRl  660 (888)
T KOG0306|consen  585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS----HDKSIRL  660 (888)
T ss_pred             hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc----CCceeEe
Confidence            54 778999999999999999999999999999999988776 66889999999999999999999884    3444455


Q ss_pred             CC
Q 018806          326 AS  327 (350)
Q Consensus       326 ~~  327 (350)
                      |.
T Consensus       661 wE  662 (888)
T KOG0306|consen  661 WE  662 (888)
T ss_pred             ee
Confidence            54

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.2e-21  Score=147.85  Aligned_cols=214  Identities=16%  Similarity=0.164  Sum_probs=160.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC-CC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG-NA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-~~  179 (350)
                      +|..++.+.|...+++++.|+.+.+||+++  ++....+ .+|.+.|+.++|+.+...+++++.|.++++||.+... .+
T Consensus        61 EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T--Gkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP  137 (307)
T KOG0316|consen   61 EVLDAALSSDNSKFASCGGDKAVQVWDVNT--GKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP  137 (307)
T ss_pred             eeeeccccccccccccCCCCceEEEEEccc--Ceeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence            488888889999999999999999999964  7776666 5899999999999987777777779999999998432 12


Q ss_pred             ceeecccccccce--------ecCCCCCceEEeeeccCC-----CCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC
Q 018806          180 ASVRSGAASFLGA--------LSRGPGTRWTLVDFLRSQ-----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL  246 (350)
Q Consensus       180 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~  246 (350)
                      -++.......+.+        ++.+.++.++..+.-.+.     -..+|+++.|++|++..+.++.+ +++++.|-.+|+
T Consensus       138 iQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~-stlrLlDk~tGk  216 (307)
T KOG0316|consen  138 IQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLD-STLRLLDKETGK  216 (307)
T ss_pred             cchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeecc-ceeeecccchhH
Confidence            2221111111111        344556666655433221     23589999999999999999999 599999999998


Q ss_pred             cee-eeecCCC--eEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCC-eEEEEEcCCCCEEEEEECCCe
Q 018806          247 GTP-IRRGFGG--LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGF-VTGATWDPEGRMILLAFAGSL  318 (350)
Q Consensus       247 ~~~-~~~~~~~--v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~  318 (350)
                      ... ..+|...  -..++++....++++|++||.|++||+...+.. .+..+... +.+++++|.-.-++++.+...
T Consensus       217 lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~  293 (307)
T KOG0316|consen  217 LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGD  293 (307)
T ss_pred             HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCce
Confidence            765 4455433  345778888889999999999999999988874 45555555 789999998877777765443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=1.6e-21  Score=165.51  Aligned_cols=217  Identities=18%  Similarity=0.322  Sum_probs=163.3

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCcc-----------------------------CeeEEEEecCCCEEEEEECCCeEE
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPEV-----------------------------DLQGVSWHQHKHIVAFISGSTQVI  124 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~~-----------------------------~V~~v~~sp~g~~la~~s~d~~i~  124 (350)
                      ...+.+|+.-+....+.|...+++.+.                             .|++++|++.|..|++.+.....+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            355677777777777888877777653                             599999999999999999988999


Q ss_pred             EEEccCCCCCcee------------EecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEecCCCCCCceeecccccccc
Q 018806          125 VRDYEDSEGKDAC------------ILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG  191 (350)
Q Consensus       125 iw~~~~~~~~~~~------------~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  191 (350)
                      |+|-+   |..+.            ..+++|...+++.+|+|+.+ .+++++.|++++|||+........+...      
T Consensus       240 l~DRd---G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~------  310 (641)
T KOG0772|consen  240 LLDRD---GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT------  310 (641)
T ss_pred             EEccC---CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee------
Confidence            99975   32222            22358999999999999854 5777788999999999854433222111      


Q ss_pred             eecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee----eeecCC--CeEEEEEcCC
Q 018806          192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----IRRGFG--GLSILKWSPT  265 (350)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~----~~~~~~--~v~~~~~sp~  265 (350)
                                    ...+...-.++.++|+|||+.||++..| |.|.+|+..+.....    ...|..  .|+++.||+|
T Consensus       311 --------------k~~~g~Rv~~tsC~~nrdg~~iAagc~D-GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d  375 (641)
T KOG0772|consen  311 --------------KPAGGKRVPVTSCAWNRDGKLIAAGCLD-GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD  375 (641)
T ss_pred             --------------ccCCCcccCceeeecCCCcchhhhcccC-CceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence                          1111223578999999999999999999 899999986543322    223554  7999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCcee--cccc--CCCCeEEEEEcCCCCEEEEEE
Q 018806          266 GDYFFAAKFDGTFYLWETNTWTSE--PWSS--TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       266 g~~l~~~~~d~~v~iwd~~~~~~~--~~~~--~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      |++|++-+.|+++++||++..+.-  ...+  ...+-+.++|||+.++|++|.
T Consensus       376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecc
Confidence            999999999999999999987652  1221  233457899999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=1.2e-21  Score=156.53  Aligned_cols=229  Identities=13%  Similarity=0.223  Sum_probs=181.6

Q ss_pred             ccccchhhhhhhhhhccccccCCCCcCCCCcc--------------------------CeeEEEEecCCCEEEEEECCCe
Q 018806           69 EGEGLFSTLHGIISHSIKPLLHPDHVHLLPEV--------------------------DLQGVSWHQHKHIVAFISGSTQ  122 (350)
Q Consensus        69 ~~~~~~~~~~gh~~~~~~~~~~p~~~~~~~~~--------------------------~V~~v~~sp~g~~la~~s~d~~  122 (350)
                      .+..++++|-.|..++....++|....+..+.                          +|.+++|+|.|.+|+.|..-.+
T Consensus       160 a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~  239 (430)
T KOG0640|consen  160 ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT  239 (430)
T ss_pred             cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc
Confidence            34578999999999999999999877777643                          6999999999999999999999


Q ss_pred             EEEEEccCCCCCceeE--ecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCc
Q 018806          123 VIVRDYEDSEGKDACI--LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR  200 (350)
Q Consensus       123 i~iw~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (350)
                      +++||+++  .++...  -..+|.+.|+++.+++.|+.+++++.||.|++||--..+++..+.                 
T Consensus       240 ~rlYdv~T--~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----------------  300 (430)
T KOG0640|consen  240 LRLYDVNT--YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-----------------  300 (430)
T ss_pred             eeEEeccc--eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-----------------
Confidence            99999965  333222  223689999999999999999999999999999977554443322                 


Q ss_pred             eEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC---C---CeEEEEEcCCCCEEEEEec
Q 018806          201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---G---GLSILKWSPTGDYFFAAKF  274 (350)
Q Consensus       201 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~---~---~v~~~~~sp~g~~l~~~~~  274 (350)
                             ..|.+..|.+..|..+|+++++.+.|+ .+++|.+.++.......+.   +   --+...|+....+++.-.+
T Consensus       301 -------~AH~gsevcSa~Ftkn~kyiLsSG~DS-~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE  372 (430)
T KOG0640|consen  301 -------NAHGGSEVCSAVFTKNGKYILSSGKDS-TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE  372 (430)
T ss_pred             -------hhcCCceeeeEEEccCCeEEeecCCcc-eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc
Confidence                   234557899999999999999999996 9999999999876544332   1   2345678888888876654


Q ss_pred             -CCeEEEEeCCCCceecc--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          275 -DGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       275 -d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                       .+.+.-||.++.....+  .+|.+.+..+.-||.+.-+++++    .++..++|-.
T Consensus       373 as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs----dD~raRFWyr  425 (430)
T KOG0640|consen  373 ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS----DDFRARFWYR  425 (430)
T ss_pred             ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec----ccceeeeeee
Confidence             56899999999887543  48999999999999999999885    3445555543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=158.48  Aligned_cols=228  Identities=10%  Similarity=0.138  Sum_probs=167.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..|++|.|||....|++|+.|+.++||.++.+....+..+. -...+|.+.+|.|+|. .+++++....++.||+...+.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            37999999999999999999999999999855444444432 3567899999999998 666677779999999984432


Q ss_pred             Ccee--ecccccccceecCCCCCceEE----------eeeccC------CCCCceeeEEECCCCCeEEEEEeCCCeEEEE
Q 018806          179 AASV--RSGAASFLGALSRGPGTRWTL----------VDFLRS------QNGEQITALSWGPDGRYLASASYESSSFTIW  240 (350)
Q Consensus       179 ~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw  240 (350)
                      .+.-  ..........|..+.++.+..          +....+      .-.+.|.++.|+.||+.|++++.+ |.|++|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-GEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-ceEEEE
Confidence            2111  111111223344444443332          211111      013688999999999999999989 799999


Q ss_pred             eCCCCCceeeeecCCCe--EEEEEcCCCCEEEEEecCCeEEEEeCCCCc----ee---ccccCCCCeEEEEEcCCCCEEE
Q 018806          241 DVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFDGTFYLWETNTWT----SE---PWSSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       241 d~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~----~~---~~~~~~~~v~~~~~s~~g~~l~  311 (350)
                      |++...+.......+.+  +++|.+++|.+||+|+..|.|.|||.++--    ..   .+..-...|+++.|++|++.|+
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence            99999877766666665  467778999999999999999999976532    22   2334566899999999999999


Q ss_pred             EEE-CCCeEEEEEEeCCCC
Q 018806          312 LAF-AGSLTLGSIHFASKP  329 (350)
Q Consensus       312 ~~~-~~~~~~~~~~~~~~~  329 (350)
                      .++ .....+..+++.+..
T Consensus       452 iaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  452 IASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             hhhhccccceEEEecccee
Confidence            988 555788888887653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=6.6e-21  Score=159.50  Aligned_cols=208  Identities=16%  Similarity=0.317  Sum_probs=149.9

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCcee-------EecCCCCCCeeEEEEeeCC-CeEEEEecCCcEE
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDAC-------ILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGIC  169 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~  169 (350)
                      ...|+.+..-|+. .+||+.+..+.+.|||..........       ....+|.+.-++++|++.. .++++++.|++|+
T Consensus       124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~  203 (422)
T KOG0264|consen  124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC  203 (422)
T ss_pred             CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence            3345555555554 67777888999999998654332221       1234788878899999874 3566777789999


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCC--C
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQG--L  246 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~--~  246 (350)
                      +||+.........                  ......+.+|. ..|..++|++-.. .+++++.| +.+.|||++++  +
T Consensus       204 lwdi~~~~~~~~~------------------~~p~~~~~~h~-~~VeDV~~h~~h~~lF~sv~dd-~~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  204 LWDINAESKEDKV------------------VDPKTIFSGHE-DVVEDVAWHPLHEDLFGSVGDD-GKLMIWDTRSNTSK  263 (422)
T ss_pred             EEeccccccCCcc------------------ccceEEeecCC-cceehhhccccchhhheeecCC-CeEEEEEcCCCCCC
Confidence            9999854432111                  11244577886 7999999999654 55666666 79999999963  2


Q ss_pred             ce-eeeecCCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          247 GT-PIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       247 ~~-~~~~~~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      .. ....|.+.+.|++|+|- +..||+|+.|++|++||+++.+.  ..+.+|...|..+.|||+...++++++.+.++..
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence            22 34568899999999995 55678999999999999998765  5677999999999999988777666544444444


Q ss_pred             EEeC
Q 018806          323 IHFA  326 (350)
Q Consensus       323 ~~~~  326 (350)
                      |++.
T Consensus       344 WDls  347 (422)
T KOG0264|consen  344 WDLS  347 (422)
T ss_pred             Eecc
Confidence            4443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.5e-20  Score=146.39  Aligned_cols=219  Identities=15%  Similarity=0.309  Sum_probs=159.1

Q ss_pred             CeeEEEEecC-CCEEEEEE-------CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEE
Q 018806          101 DLQGVSWHQH-KHIVAFIS-------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIW  171 (350)
Q Consensus       101 ~V~~v~~sp~-g~~la~~s-------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iw  171 (350)
                      .=.++.|||- .++||.+.       ..|.+.|.++....+-....- ..-...+..++|+++.. .++++..||++++|
T Consensus        10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-YDTEDGLFDVAWSENHENQVIAASGDGSLRLF   88 (311)
T ss_pred             ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-eecccceeEeeecCCCcceEEEEecCceEEEe
Confidence            3467889983 24455443       478899999863333322222 24567899999998754 56666779999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCcee-
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-  249 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~~-  249 (350)
                      |+..+..+                        +..++.|. ..|.++.|++ +++.+++++.| |+|++|+...++... 
T Consensus        89 d~~~~s~P------------------------i~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD-~TiKLW~~~r~~Sv~T  142 (311)
T KOG0277|consen   89 DLTMPSKP------------------------IHKFKEHK-REVYSVDWNTVRRRIFLTSSWD-GTIKLWDPNRPNSVQT  142 (311)
T ss_pred             ccCCCCcc------------------------hhHHHhhh-hheEEeccccccceeEEeeccC-CceEeecCCCCcceEe
Confidence            97644332                        33466775 7999999998 56677888889 799999998776554 


Q ss_pred             eeecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCC-CceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC-
Q 018806          250 IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNT-WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA-  326 (350)
Q Consensus       250 ~~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~-  326 (350)
                      ..+|...|+..+|+| ....+++++.|+++++||++. |+...+..|...+.++.|+.-...++++++.+..++.|++. 
T Consensus       143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence            556888999999999 477889999999999999986 44456778889999999999766666555444445555544 


Q ss_pred             -CCCC-CCceeecccccceeec
Q 018806          327 -SKPP-SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       327 -~~~~-~~~~~~~~v~~~~~~~  346 (350)
                       ..+. .+.+|...|+...+++
T Consensus       223 ~r~pl~eL~gh~~AVRkvk~Sp  244 (311)
T KOG0277|consen  223 LRTPLFELNGHGLAVRKVKFSP  244 (311)
T ss_pred             ccccceeecCCceEEEEEecCc
Confidence             4333 7789999888766553

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=2.5e-21  Score=163.95  Aligned_cols=199  Identities=14%  Similarity=0.176  Sum_probs=165.8

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      +.-++++.++|||+.|++|+.-.++.|||+...+......+. ...-.+.+++.+||.+..+++.+||.|.|||+.... 
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-  542 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-  542 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-
Confidence            446899999999999999999999999999766544333332 334568889999998888888889999999998332 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeE
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  258 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~  258 (350)
                                              +++.+++|. ..+.+|..++||..|-+++.|+ +|+.||++++...........|.
T Consensus       543 ------------------------~VrqfqGht-DGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIf  596 (705)
T KOG0639|consen  543 ------------------------LVRQFQGHT-DGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIF  596 (705)
T ss_pred             ------------------------eeecccCCC-CCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhhe
Confidence                                    466789997 5899999999999999999996 99999999887665555568899


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ++..+|++.||++|.+++.+.|......+..++..|+.-|.++.|++.|+++++.+ ++..+..|+..
T Consensus       597 SLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtP  663 (705)
T KOG0639|consen  597 SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTP  663 (705)
T ss_pred             ecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC-chhhhhhccCc
Confidence            99999999999999999999999888777778889999999999999999998764 33345555543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=4.4e-21  Score=148.44  Aligned_cols=198  Identities=16%  Similarity=0.278  Sum_probs=150.9

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee--CCCeEEEEecCCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      |..+...--|++||+++.|++|+|+......+........+|.++|+.++|..  -|..|++++.||+|.||.-..+   
T Consensus        14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g---   90 (299)
T KOG1332|consen   14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG---   90 (299)
T ss_pred             hhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC---
Confidence            45555556789999999999999999985544233444469999999999965  5777788888999999997733   


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCC-C---ceeeeec
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQG-L---GTPIRRG  253 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~-~---~~~~~~~  253 (350)
                                          +|.-......|. ..|++++|.|.  |-.|++++.| |.|.+.+.+.. .   ......|
T Consensus        91 --------------------~w~k~~e~~~h~-~SVNsV~wapheygl~LacasSD-G~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   91 --------------------RWTKAYEHAAHS-ASVNSVAWAPHEYGLLLACASSD-GKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             --------------------chhhhhhhhhhc-ccceeecccccccceEEEEeeCC-CcEEEEEEcCCCCccchhhhhcc
Confidence                                222233355665 79999999996  6678899999 79999988765 2   1234568


Q ss_pred             CCCeEEEEEcCC---C-----------CEEEEEecCCeEEEEeCCCCce---eccccCCCCeEEEEEcCCC----CEEEE
Q 018806          254 FGGLSILKWSPT---G-----------DYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMILL  312 (350)
Q Consensus       254 ~~~v~~~~~sp~---g-----------~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g----~~l~~  312 (350)
                      .-++.+++|.|-   |           +.|++|+.|..|+||+..+++-   ..+.+|...|..++|.|.-    .+|++
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence            889999999985   5           5699999999999999988643   4578999999999999964    45665


Q ss_pred             EE-CCCeEEEEEE
Q 018806          313 AF-AGSLTLGSIH  324 (350)
Q Consensus       313 ~~-~~~~~~~~~~  324 (350)
                      ++ ++...+|..+
T Consensus       229 ~SqDg~viIwt~~  241 (299)
T KOG1332|consen  229 CSQDGTVIIWTKD  241 (299)
T ss_pred             ecCCCcEEEEEec
Confidence            55 4445555544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.6e-19  Score=138.51  Aligned_cols=212  Identities=14%  Similarity=0.188  Sum_probs=151.1

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCC--------CC----CceeEecCCCCCCeeEEEEeeCCCeEEEEecCCc
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------EG----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG  167 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~--------~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  167 (350)
                      ..|++++|+|.|.+.|+|++.++.+|.....-        ..    ...+.-.+.|.+.|.+.+|+|+|+.+++++.|++
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~  112 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT  112 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence            46999999999999999999999998754210        00    1122233468899999999999888888888999


Q ss_pred             EEEEecCCCCCCceee----cccccccce-------------ecCCCCCceE----------EeeeccCCCCCceeeEEE
Q 018806          168 ICIWAPSYPGNAASVR----SGAASFLGA-------------LSRGPGTRWT----------LVDFLRSQNGEQITALSW  220 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~  220 (350)
                      |++..++...+...-.    ......+..             +.....+..+          -...+.+|. +.|.++ +
T Consensus       113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght-ghilal-y  190 (350)
T KOG0641|consen  113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT-GHILAL-Y  190 (350)
T ss_pred             EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc-ccEEEE-E
Confidence            9998776332211100    001111111             2222222222          123456676 455554 2


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCCceeeee---c-----CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-ecc
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRR---G-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPW  291 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~-----~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~  291 (350)
                      +-+|-.+++++.|. +|++||++-..+.....   |     ...|.+++..|.|++|++|..|....+||++.+.. +.+
T Consensus       191 swn~~m~~sgsqdk-tirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f  269 (350)
T KOG0641|consen  191 SWNGAMFASGSQDK-TIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF  269 (350)
T ss_pred             EecCcEEEccCCCc-eEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence            33578999999995 99999999887665443   1     24688999999999999999999999999999987 557


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEE
Q 018806          292 SSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       292 ~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ..|...|.++.|||...+|++++
T Consensus       270 ~phsadir~vrfsp~a~yllt~s  292 (350)
T KOG0641|consen  270 HPHSADIRCVRFSPGAHYLLTCS  292 (350)
T ss_pred             CCCccceeEEEeCCCceEEEEec
Confidence            78999999999999999999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.7e-20  Score=154.36  Aligned_cols=224  Identities=13%  Similarity=0.147  Sum_probs=171.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..+|.+++-+|+|.+|+.|...|.+++|.+.+  |..+..+ ..|-..|+++.|+-||..+++++.||.|.+|.+..--.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS--GILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEecc--ccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence            34699999999999999888999999999954  7776666 58999999999999999999999999999999862110


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCCCceeeeecCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~  256 (350)
                                      ...+........+..|. -+|+++...+.  ..+|++++.|. ++++||+..+........+..
T Consensus       158 ----------------a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~-t~k~wdlS~g~LLlti~fp~s  219 (476)
T KOG0646|consen  158 ----------------ADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDR-TIKLWDLSLGVLLLTITFPSS  219 (476)
T ss_pred             ----------------cccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCc-eEEEEEeccceeeEEEecCCc
Confidence                            00111122345567776 68999988765  46799999995 999999999988777778899


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCc-----------------eeccccCCC--CeEEEEEcCCCCEEEEEECCC
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWT-----------------SEPWSSTSG--FVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~-----------------~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      +.+++.+|-++.+++|+.+|.|.+.++....                 ...+.+|.+  .|++++.+-||..|++|. .+
T Consensus       220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd-~d  298 (476)
T KOG0646|consen  220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD-ED  298 (476)
T ss_pred             ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC-CC
Confidence            9999999999999999999999998875433                 122447777  999999999999999776 22


Q ss_pred             eEEEEEEeCCCC--CCCceeeccccccee
Q 018806          318 LTLGSIHFASKP--PSLDAHLLPVDLPDI  344 (350)
Q Consensus       318 ~~~~~~~~~~~~--~~~~~~~~~v~~~~~  344 (350)
                      ..+..|++.++.  .++.....||+...+
T Consensus       299 g~VcvWdi~S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  299 GKVCVWDIYSKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             CCEEEEecchHHHHHHHhhhccccceeEe
Confidence            345555555433  244334555554444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=2.7e-19  Score=150.12  Aligned_cols=225  Identities=15%  Similarity=0.174  Sum_probs=169.0

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      .+...+.+++.|+||++||+|+.|..|.||+.++  .+.+..+ .+|.+.|.+++|--....+++++.|+++++|+++..
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--LEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcc--cchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            4556799999999999999999999999999965  4444443 689999999999887788999999999999999844


Q ss_pred             CCCceeecc--------cccccceecCC-CCCceEEee-------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE
Q 018806          177 GNAASVRSG--------AASFLGALSRG-PGTRWTLVD-------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIW  240 (350)
Q Consensus       177 ~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw  240 (350)
                      .....+...        .......+..+ -|....+|+       .+.++. +.+-+++|-. ..++++|+.+ |.|.+|
T Consensus       277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~-~sidcv~~In-~~HfvsGSdn-G~IaLW  353 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGE-GSIDCVAFIN-DEHFVSGSDN-GSIALW  353 (479)
T ss_pred             HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCC-CCeeeEEEec-ccceeeccCC-ceEEEe
Confidence            333322211        11111112222 344445554       344553 6888888865 4688899888 899999


Q ss_pred             eCCCCCceeeee--c-----------CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce----eccccCCCCeEEEEE
Q 018806          241 DVAQGLGTPIRR--G-----------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATW  303 (350)
Q Consensus       241 d~~~~~~~~~~~--~-----------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~  303 (350)
                      ++...++.....  |           +.+|++++..|...++++|+.+|.|++|-+..+-.    ..-....+.|++++|
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f  433 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAF  433 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEE
Confidence            999887654331  2           12789999999999999999999999999988732    222246788999999


Q ss_pred             cCCCCEEEEEECCCeEEEEEEeCC
Q 018806          304 DPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       304 s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +++|+.|++|.+..-.++.|-...
T Consensus       434 ~~sgk~ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  434 SNSGKRIVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             ccCCCEEEEecccccccceeeEee
Confidence            999999999988888888887653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.86  E-value=3.6e-21  Score=156.13  Aligned_cols=205  Identities=14%  Similarity=0.207  Sum_probs=158.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|+|+.+.  ...+++|..|++|+|||.+.  -.+...+ .+|.+.|.|+.|..  +.++++++|.+|+|||.++++.  
T Consensus       199 gVYClQYD--D~kiVSGlrDnTikiWD~n~--~~c~~~L-~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~--  269 (499)
T KOG0281|consen  199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNS--LECLKIL-TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEP--  269 (499)
T ss_pred             ceEEEEec--chhhhcccccCceEEecccc--HHHHHhh-hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCch--
Confidence            68999885  45689999999999999853  4444444 59999999999853  5677777799999999996554  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce----eeeecCCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGG  256 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~----~~~~~~~~  256 (350)
                                             ++++-+|. ..|..+.|+.  .++++++.|. ++.+||+.+....    .+.+|...
T Consensus       270 -----------------------l~tlihHc-eaVLhlrf~n--g~mvtcSkDr-siaVWdm~sps~it~rrVLvGHrAa  322 (499)
T KOG0281|consen  270 -----------------------LNTLIHHC-EAVLHLRFSN--GYMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAA  322 (499)
T ss_pred             -----------------------hhHHhhhc-ceeEEEEEeC--CEEEEecCCc-eeEEEeccCchHHHHHHHHhhhhhh
Confidence                                   34455665 6899999974  5899999995 9999999987643    35578889


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCce
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDA  334 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~  334 (350)
                      |..+.|+  .++|++++.|++|++|++.+++. ..+.+|...|.++.+  .|+++++|+ +..+.+|++.-......+.+
T Consensus       323 VNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG  398 (499)
T KOG0281|consen  323 VNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG  398 (499)
T ss_pred             eeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc
Confidence            9999985  56999999999999999999998 456789888887765  478888776 44455555444444447788


Q ss_pred             eecccccceee
Q 018806          335 HLLPVDLPDIV  345 (350)
Q Consensus       335 ~~~~v~~~~~~  345 (350)
                      |..-|+...+.
T Consensus       399 HEeLvRciRFd  409 (499)
T KOG0281|consen  399 HEELVRCIRFD  409 (499)
T ss_pred             hHHhhhheeec
Confidence            88777766554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=9.6e-22  Score=173.03  Aligned_cols=187  Identities=20%  Similarity=0.344  Sum_probs=158.6

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ++.+|.++.|+++..+|+.|+.+|+|++||++.  .+.+..+ .+|...+.++.|+|-+.+.+.++.|..+++||.+..+
T Consensus        69 hespIeSl~f~~~E~LlaagsasgtiK~wDlee--Ak~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   69 HESPIESLTFDTSERLLAAGSASGTIKVWDLEE--AKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             cCCcceeeecCcchhhhcccccCCceeeeehhh--hhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            345699999999999999999999999999963  5555555 4899999999999998777667779999999999554


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGG  256 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~  256 (350)
                      +                         ...+.+|. ..+..+.|+|+|++++.++.|+ +++|||...|+...-+ .|.+.
T Consensus       146 c-------------------------~~~~~s~~-~vv~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~e~~  198 (825)
T KOG0267|consen  146 C-------------------------SHTYKSHT-RVVDVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSHEGK  198 (825)
T ss_pred             c-------------------------eeeecCCc-ceeEEEeecCCCceeeccCCcc-eeeeeccccccccccccccccc
Confidence            4                         44566665 6889999999999999999995 9999999999876544 58899


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +..+.|+|..-.++.|+.|++|++||+++.+.. ........|.+.+|+|+|+.+++|.
T Consensus       199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence            999999999989999999999999999987763 3444567899999999999988775

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=3.8e-19  Score=150.90  Aligned_cols=235  Identities=12%  Similarity=0.156  Sum_probs=172.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      -|.|++|.++|+ +++|..+|.|.||+...  .+...... .|++.|.+++...+ ..|++++.|+.|..||-...+...
T Consensus       248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~--~~~~k~~~-aH~ggv~~L~~lr~-GtllSGgKDRki~~Wd~~y~k~r~  322 (626)
T KOG2106|consen  248 FVLCVTFLENGD-VITGDSGGNILIWSKGT--NRISKQVH-AHDGGVFSLCMLRD-GTLLSGGKDRKIILWDDNYRKLRE  322 (626)
T ss_pred             EEEEEEEcCCCC-EEeecCCceEEEEeCCC--ceEEeEee-ecCCceEEEEEecC-ccEeecCccceEEecccccccccc
Confidence            599999999998 55899999999999843  33333443 89999999999998 577788889999999954332222


Q ss_pred             eeecccccccceecCCCCCc-------eEE--------eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC
Q 018806          181 SVRSGAASFLGALSRGPGTR-------WTL--------VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG  245 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~-------~~~--------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~  245 (350)
                      .-.+....++..+..+..+-       ..+        .....+|. ...+.++.+|+...+++++.| +.+++|+  ..
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~q~~T~gqd-k~v~lW~--~~  398 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG-DELWGLATHPSKNQLLTCGQD-KHVRLWN--DH  398 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc-cceeeEEcCCChhheeeccCc-ceEEEcc--CC
Confidence            11222233333333332221       111        12345665 488999999999999999999 5999999  44


Q ss_pred             CceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          246 LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       246 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      +.........+..++.|+|.| .+|.|...|...+.|.++....++.....+++.++|+|+|.+||+++ ++.+++|.++
T Consensus       399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence            555555567889999999999 99999999999999999977777666688999999999999999998 7777777776


Q ss_pred             eCCCCCCC--ceeecccccceee
Q 018806          325 FASKPPSL--DAHLLPVDLPDIV  345 (350)
Q Consensus       325 ~~~~~~~~--~~~~~~v~~~~~~  345 (350)
                      -.......  ..|..||+...++
T Consensus       478 ~~g~~y~r~~k~~gs~ithLDwS  500 (626)
T KOG2106|consen  478 ANGRKYSRVGKCSGSPITHLDWS  500 (626)
T ss_pred             CCCcEEEEeeeecCceeEEeeec
Confidence            66543311  1333666665554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=7.2e-21  Score=155.04  Aligned_cols=228  Identities=15%  Similarity=0.171  Sum_probs=161.7

Q ss_pred             ccchhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeE
Q 018806           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV  149 (350)
Q Consensus        71 ~~~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~  149 (350)
                      +.+++.|.||..+                  |.|++=+|.. ..+|+|+.||.|+|||+..  ..+...+ ..|.+.|..
T Consensus        56 kPFv~~L~gHrdG------------------V~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f-~AH~G~V~G  114 (433)
T KOG0268|consen   56 KPFVGSLDGHRDG------------------VSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTF-KAHEGLVRG  114 (433)
T ss_pred             ccchhhccccccc------------------cchhhcCcchhhhhhccccCceEEEEehhh--hhhhhee-ecccCceee
Confidence            4566777888777                  5555555555 6799999999999999963  3444444 589999999


Q ss_pred             EEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccc-c-----cccceecCCCCCceEEeee--------ccCCCCCce
Q 018806          150 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA-A-----SFLGALSRGPGTRWTLVDF--------LRSQNGEQI  215 (350)
Q Consensus       150 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v  215 (350)
                      +++..  ..++++|.|++|+.|.++.+ ....+.... .     ..........+..+.+|+.        +.-.. ..|
T Consensus       115 i~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~-Dti  190 (433)
T KOG0268|consen  115 ICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGA-DSI  190 (433)
T ss_pred             EEecc--cceEEecCCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCC-Cce
Confidence            99986  68999999999999998742 111111110 0     0001111122223333432        22112 367


Q ss_pred             eeEEECCCCCe-EEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccc
Q 018806          216 TALSWGPDGRY-LASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS  292 (350)
Q Consensus       216 ~~~~~sp~g~~-l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~  292 (350)
                      .++.|+|-... |++++.| +.|.+||++.+.+.......-....++|+|.+-.++++++|..++.||++..+.  ....
T Consensus       191 ~svkfNpvETsILas~~sD-rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASD-RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             eEEecCCCcchheeeeccC-CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence            88999997654 5566677 699999999988766544455667899999887788999999999999987665  4566


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          293 STSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       293 ~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      +|.+.|.+++|||.|+-+++|+ |..+.++.++
T Consensus       270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ccceeEEEeccCCCcchhccccccceEEEeecC
Confidence            8999999999999999999997 7666666654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.3e-19  Score=158.13  Aligned_cols=198  Identities=17%  Similarity=0.284  Sum_probs=158.8

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|-+++|+  +..+.+|+.++.|..+|+..  .+.......+|...|..++|++|+.++++++.|+.+.|||......
T Consensus       260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~--~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRI--SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             CceeEEEecc--CceEEEecCCCcEEEEEEec--chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            4479999998  67888999999999999965  3333333468999999999999999999999999999999953322


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEE--eCCCeEEEEeCCCCCceeeeecCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASAS--YESSSFTIWDVAQGLGTPIRRGFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~--~d~g~i~iwd~~~~~~~~~~~~~~  255 (350)
                                               ...+..|. +.|.+++|+|- ...||+|+  .| ++|++||..++..........
T Consensus       336 -------------------------~~~~~~H~-aAVKA~awcP~q~~lLAsGGGs~D-~~i~fwn~~~g~~i~~vdtgs  388 (484)
T KOG0305|consen  336 -------------------------KFTFTEHT-AAVKALAWCPWQSGLLATGGGSAD-RCIKFWNTNTGARIDSVDTGS  388 (484)
T ss_pred             -------------------------cEEEeccc-eeeeEeeeCCCccCceEEcCCCcc-cEEEEEEcCCCcEecccccCC
Confidence                                     23355665 79999999995 45666653  46 699999999998888777889


Q ss_pred             CeEEEEEcCCCCEEEEE--ecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          256 GLSILKWSPTGDYFFAA--KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~--~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      .|+.+.|++..+.|+++  ..++.|.||++.+.+. ..+.+|...|..++++|||..+++++.+. .+..|+++..
T Consensus       389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE-Tlrfw~~f~~  463 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE-TLRFWNLFDE  463 (484)
T ss_pred             ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC-cEEeccccCC
Confidence            99999999998777655  3467899999999777 56789999999999999999999887443 5566666653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.6e-20  Score=165.27  Aligned_cols=193  Identities=19%  Similarity=0.380  Sum_probs=149.0

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~  176 (350)
                      .-.|+++.|++.. .+|++|++||.|++||+..+..   ...+.+....|..++|+|.....+++..| |.+++||++..
T Consensus       133 ~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp  209 (839)
T KOG0269|consen  133 ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP  209 (839)
T ss_pred             ccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence            3469999999865 7889999999999999975332   22334567889999999987777777776 99999999954


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee--eeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~--~~~~~  254 (350)
                      ...                        ...+..|. +.|.++.|+|++.+||+|+.| +.|+|||+.+++...  .....
T Consensus       210 ~r~------------------------~~k~~AH~-GpV~c~nwhPnr~~lATGGRD-K~vkiWd~t~~~~~~~~tInTi  263 (839)
T KOG0269|consen  210 DRC------------------------EKKLTAHN-GPVLCLNWHPNREWLATGGRD-KMVKIWDMTDSRAKPKHTINTI  263 (839)
T ss_pred             hhH------------------------HHHhhccc-CceEEEeecCCCceeeecCCC-ccEEEEeccCCCccceeEEeec
Confidence            432                        23366776 899999999999999999999 599999999776543  33456


Q ss_pred             CCeEEEEEcCCCCE-EEEEec--CCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 018806          255 GGLSILKWSPTGDY-FFAAKF--DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  320 (350)
Q Consensus       255 ~~v~~~~~sp~g~~-l~~~~~--d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  320 (350)
                      .++.++.|-|+.++ ||+++.  |-.|+|||++..-+  ..+..|...++.++|......++..++++..+
T Consensus       264 apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  264 APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence            88999999998665 666654  77999999988766  45668999999999977555555555554433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=2e-20  Score=158.54  Aligned_cols=193  Identities=13%  Similarity=0.129  Sum_probs=164.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ..++++.|||.+...++..||.|.|||+..  ... ...+.+|...+.||..++||.+|-++|-|++|+.||++......
T Consensus       511 aCyALa~spDakvcFsccsdGnI~vwDLhn--q~~-VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  511 ACYALAISPDAKVCFSCCSDGNIAVWDLHN--QTL-VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             hhhhhhcCCccceeeeeccCCcEEEEEccc--cee-eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence            568889999999999999999999999963  333 44447999999999999999999999999999999999655432


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  260 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~  260 (350)
                      .-.                           -.+.|.++..+|.+.+++.+-.+ +.+.+......+...+..|...|.++
T Consensus       588 qhd---------------------------F~SQIfSLg~cP~~dWlavGMen-s~vevlh~skp~kyqlhlheScVLSl  639 (705)
T KOG0639|consen  588 QHD---------------------------FSSQIFSLGYCPTGDWLAVGMEN-SNVEVLHTSKPEKYQLHLHESCVLSL  639 (705)
T ss_pred             hhh---------------------------hhhhheecccCCCccceeeeccc-CcEEEEecCCccceeecccccEEEEE
Confidence            211                           12689999999999999999888 59999988877777778889999999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      .|.+.|+|+++.+.|+-+..|.+.-|...--......|.++.+|-|.++|++|+ ++...+|.+-
T Consensus       640 KFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  640 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             EecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence            999999999999999999999998887755556678899999999999999998 5567888764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=148.02  Aligned_cols=200  Identities=21%  Similarity=0.418  Sum_probs=146.2

Q ss_pred             eeEEEEecCC--CEEEEEECCCeEEEEEccCC-------------CCCceeEecCCCCCCeeEEEEeeC-CCeEEEEecC
Q 018806          102 LQGVSWHQHK--HIVAFISGSTQVIVRDYEDS-------------EGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCK  165 (350)
Q Consensus       102 V~~v~~sp~g--~~la~~s~d~~i~iw~~~~~-------------~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d  165 (350)
                      ++.+.-++-+  .+.|+=+..|.|+||++...             ..........+|.+.=+.++|||- ...++++..-
T Consensus       154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~  233 (440)
T KOG0302|consen  154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV  233 (440)
T ss_pred             cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence            4444444443  55666677899999998420             011112223478888899999994 2356666667


Q ss_pred             CcEEEEecCCCCCCceeecccccccceecCCCCCceEE-eeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCC
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL-VDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVA  243 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~  243 (350)
                      +.|++|....+                       .|.. ...+.+|. ..|..++|||.. ..|++++.| |+|+|||++
T Consensus       234 ~~I~lw~~~~g-----------------------~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~D-gsIrIWDiR  288 (440)
T KOG0302|consen  234 KGIHLWEPSTG-----------------------SWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCD-GSIRIWDIR  288 (440)
T ss_pred             cceEeeeeccC-----------------------ceeecCccccccc-cchhhhccCCccCceEEeeecC-ceEEEEEec
Confidence            99999988732                       2222 12466776 799999999964 567888889 799999999


Q ss_pred             CCC---ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee----ccccCCCCeEEEEEcCCCCEEEEEE--
Q 018806          244 QGL---GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAF--  314 (350)
Q Consensus       244 ~~~---~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~--  314 (350)
                      .+.   +.....|.+.|..+.|+.+..+||+|+.||+++|||++.-+..    .+..|..+|+++.|+|....++.++  
T Consensus       289 s~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  289 SGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             CCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence            984   3445678899999999999889999999999999999987653    6778999999999999765544443  


Q ss_pred             CCCeEEEEEEeC
Q 018806          315 AGSLTLGSIHFA  326 (350)
Q Consensus       315 ~~~~~~~~~~~~  326 (350)
                      ++.+.+|++.+.
T Consensus       369 D~QitiWDlsvE  380 (440)
T KOG0302|consen  369 DNQITIWDLSVE  380 (440)
T ss_pred             CCcEEEEEeecc
Confidence            555666666554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=6e-20  Score=160.08  Aligned_cols=206  Identities=17%  Similarity=0.171  Sum_probs=159.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE-eeCCCeEEEEecCCcEEEEecCCCCC-
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-RPNGGRSLSVGCKGGICIWAPSYPGN-  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~v~iwd~~~~~~-  178 (350)
                      .|..+...-+|+.|+++|.|-+|++|+.......+...+ ..|...|.+++. .++...++++|-|+.|.+||++.... 
T Consensus        75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~  153 (735)
T KOG0308|consen   75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT  153 (735)
T ss_pred             HHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchh
Confidence            477777778999999999999999999864322333333 479999999999 66755666666699999999995532 


Q ss_pred             -CceeecccccccceecCCCCCceEEeeecc-CCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeeeecCC
Q 018806          179 -AASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFG  255 (350)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~~~~~  255 (350)
                       ...+...                 ....+. |+. ..|++++.++.|..|++|+.+ +.+++||.++++. ..+.+|..
T Consensus       154 l~~s~n~~-----------------t~~sl~sG~k-~siYSLA~N~t~t~ivsGgte-k~lr~wDprt~~kimkLrGHTd  214 (735)
T KOG0308|consen  154 LVASFNNV-----------------TVNSLGSGPK-DSIYSLAMNQTGTIIVSGGTE-KDLRLWDPRTCKKIMKLRGHTD  214 (735)
T ss_pred             hhhhcccc-----------------ccccCCCCCc-cceeeeecCCcceEEEecCcc-cceEEeccccccceeeeecccc
Confidence             1111111                 011122 554 699999999999999999999 5999999999865 46788999


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .|..+..++||+.+++++.||+|++||+...++ .++..|...|+++.-+|+=..+++|+ .+..++.-++.+
T Consensus       215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRN  286 (735)
T ss_pred             ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCC
Confidence            999999999999999999999999999988887 45778888999999999988888775 223444444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6e-19  Score=159.51  Aligned_cols=221  Identities=16%  Similarity=0.268  Sum_probs=162.2

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      .+....+.|+|.|+|.+|.+++.||.|++|+..... ..+..+. .+...|.+++-.  +.+|++++.+++|.+|.+...
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~-~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETID-ISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhh-ccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence            444558899999999999999999999999976431 3333332 266778777764  458888888999999999855


Q ss_pred             CCCceeecccccccce---------ecCC-CCCceEEe--------eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEE
Q 018806          177 GNAASVRSGAASFLGA---------LSRG-PGTRWTLV--------DFLRSQNGEQITALSWGPDGRYLASASYESSSFT  238 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~--------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~  238 (350)
                      ..-..+... ..+...         ++.+ .+..++++        ..+++|. ++|.++.|+|.+.+||+.+.| |.|+
T Consensus        87 ~~~~iL~Rf-tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~~~fLAvss~d-G~v~  163 (933)
T KOG1274|consen   87 EEDTILARF-TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPKGNFLAVSSCD-GKVQ  163 (933)
T ss_pred             Cccceeeee-eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCCCCEEEEEecC-ceEE
Confidence            443232222 112222         2222 22233333        3577886 899999999999999999999 8999


Q ss_pred             EEeCCCCCceeeeec---------CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee---ccccCCCCeEEEEEcCC
Q 018806          239 IWDVAQGLGTPIRRG---------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPE  306 (350)
Q Consensus       239 iwd~~~~~~~~~~~~---------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~s~~  306 (350)
                      +||+.++........         ...+..++|+|+|..+++...|+.|++|+..++...   ....+...+..+.|+|+
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            999998865433221         234567999999888888889999999999998773   22234445899999999


Q ss_pred             CCEEEEEE-CCCeEEEEEE
Q 018806          307 GRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       307 g~~l~~~~-~~~~~~~~~~  324 (350)
                      |+|||++. ++.+.+|.|+
T Consensus       244 G~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  244 GKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             CcEEeeeccCCcEEEEecc
Confidence            99999988 8888888888

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.84  E-value=1.4e-20  Score=158.64  Aligned_cols=162  Identities=18%  Similarity=0.290  Sum_probs=140.1

Q ss_pred             cCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeE
Q 018806          140 TSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  218 (350)
Q Consensus       140 ~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (350)
                      ..+|...|+++.|.| .+..+++++.|+.|+||++-..+                        .+++++.+|. ..|.++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------------------------~~lrtf~gH~-k~Vrd~  264 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------------------------RCLRTFKGHR-KPVRDA  264 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------------------------ceehhhhcch-hhhhhh
Confidence            358999999999999 66667777779999999997422                        3577789997 799999


Q ss_pred             EECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCcee-ccccCCC
Q 018806          219 SWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-PWSSTSG  296 (350)
Q Consensus       219 ~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~  296 (350)
                      +|+++|..+++++.| +.|++||+++|++...+.....+.++.|+|++ +.+++|+.|+.|+.||+++++.. ....|-+
T Consensus       265 ~~s~~g~~fLS~sfD-~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg  343 (503)
T KOG0282|consen  265 SFNNCGTSFLSASFD-RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG  343 (503)
T ss_pred             hccccCCeeeeeecc-eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence            999999999999999 59999999999998888888889999999998 77889999999999999999984 4557888


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCC
Q 018806          297 FVTGATWDPEGRMILLAF-AGSLTLGSIHFAS  327 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~  327 (350)
                      .|..+.|-++|+.+++++ ++...+|+++..-
T Consensus       344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  344 AILDITFVDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             heeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence            999999999999999888 5556777776553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.84  E-value=2.1e-20  Score=154.70  Aligned_cols=223  Identities=13%  Similarity=0.145  Sum_probs=158.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|..+.|-++...|++|+.|..|++|+...........+ .+..++|+++.|.+++.++++++.|+.+++|++.....
T Consensus       175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~  253 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL  253 (459)
T ss_pred             ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCCCceEEeecCCCceeeeeccchhh
Confidence            44799999999999999999999999999974332233333 46778999999999999999999999999999984332


Q ss_pred             Cc-------eeecccccccc--eecCCCCCceEEeeeccCC------CCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          179 AA-------SVRSGAASFLG--ALSRGPGTRWTLVDFLRSQ------NGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       179 ~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                      ..       ++....+....  .++.+.+..++.|+.-+..      ..+.+.+|..+  ...++++..| ++|++||++
T Consensus       254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~D-kkvRfwD~R  330 (459)
T KOG0288|consen  254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFD-KKVRFWDIR  330 (459)
T ss_pred             hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccc-cceEEEecc
Confidence            22       22222111111  1223333333333211110      01344555555  4567777788 599999999


Q ss_pred             CCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-----cCCCCeEEEEEcCCCCEEEEEE-CCC
Q 018806          244 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPEGRMILLAF-AGS  317 (350)
Q Consensus       244 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~s~~g~~l~~~~-~~~  317 (350)
                      +..+.......+.|+++..+++|..|.+++.|.++.+.|+++.+.....     ....-.+.+.|||++.|+++|+ ++.
T Consensus       331 s~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs  410 (459)
T KOG0288|consen  331 SADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS  410 (459)
T ss_pred             CCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc
Confidence            9988877777789999999999999999999999999999998875433     1223478899999999999887 444


Q ss_pred             eEEEEEEeCC
Q 018806          318 LTLGSIHFAS  327 (350)
Q Consensus       318 ~~~~~~~~~~  327 (350)
                        ++.|.+..
T Consensus       411 --v~iW~v~t  418 (459)
T KOG0288|consen  411 --VYIWSVFT  418 (459)
T ss_pred             --EEEEEccC
Confidence              44454443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.84  E-value=1.3e-19  Score=158.99  Aligned_cols=187  Identities=13%  Similarity=0.143  Sum_probs=155.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|.+++...++. +++||.|.++++|..    ++....+ .+|...|++++.-|+ +.+++++.|++|++|.-.      
T Consensus       103 nVC~ls~~~~~~-~iSgSWD~TakvW~~----~~l~~~l-~gH~asVWAv~~l~e-~~~vTgsaDKtIklWk~~------  169 (745)
T KOG0301|consen  103 NVCSLSIGEDGT-LISGSWDSTAKVWRI----GELVYSL-QGHTASVWAVASLPE-NTYVTGSADKTIKLWKGG------  169 (745)
T ss_pred             ceeeeecCCcCc-eEecccccceEEecc----hhhhccc-CCcchheeeeeecCC-CcEEeccCcceeeeccCC------
Confidence            488888777887 889999999999998    4444444 689999999999999 589999999999999865      


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  260 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~  260 (350)
                                           .+.+++.+|. ..|+.+++-+++ .++++++| |.|++|++.......+.+|...++++
T Consensus       170 ---------------------~~l~tf~gHt-D~VRgL~vl~~~-~flScsND-g~Ir~w~~~ge~l~~~~ghtn~vYsi  225 (745)
T KOG0301|consen  170 ---------------------TLLKTFSGHT-DCVRGLAVLDDS-HFLSCSND-GSIRLWDLDGEVLLEMHGHTNFVYSI  225 (745)
T ss_pred             ---------------------chhhhhccch-hheeeeEEecCC-CeEeecCC-ceEEEEeccCceeeeeeccceEEEEE
Confidence                                 1356688987 699999998865 67788899 79999999666666788899999999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCceeccccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS-GFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ...+++..++++++|++++||+..  ++.+...+. ..|+++.+-++|..++.++|+.++++..+-.
T Consensus       226 s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  226 SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence            988888899999999999999887  555444444 4899999999999888777888888887643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.84  E-value=2e-19  Score=160.97  Aligned_cols=196  Identities=16%  Similarity=0.144  Sum_probs=163.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe--cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..+++++.++.|++.+.|+..|.|-+|++..  |.....+  ...|+++|+.++...-++.+++++.+|.++.||+....
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS--Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQS--GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEccc--CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence            4799999999999999999999999999953  5444444  23699999999998887889999999999999998443


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG  256 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~  256 (350)
                      ....+..                           ...+..+..+.....++.+..|- .|+++|+.+.+..+ +.+|...
T Consensus       527 l~~~l~l---------------------------~~~~~~iv~hr~s~l~a~~~ddf-~I~vvD~~t~kvvR~f~gh~nr  578 (910)
T KOG1539|consen  527 LKKSLRL---------------------------GSSITGIVYHRVSDLLAIALDDF-SIRVVDVVTRKVVREFWGHGNR  578 (910)
T ss_pred             eeeeecc---------------------------CCCcceeeeeehhhhhhhhcCce-eEEEEEchhhhhhHHhhccccc
Confidence            2222221                           24778888888888888888885 99999999887665 4568899


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ++.++|||||+||++++.|++|++||+.++.+........+++++.|||+|.+||++.-+...++.|..
T Consensus       579 itd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  579 ITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            999999999999999999999999999999998777778899999999999999999855555666543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.84  E-value=1e-20  Score=146.90  Aligned_cols=213  Identities=13%  Similarity=0.203  Sum_probs=173.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++..++.+..+.|+++.|-+.+|||.-+  +..+..+  .|..-|.+++|+.|.++|++++.++-++|||++.+..+ 
T Consensus        61 avw~~~l~~na~~aasaaadftakvw~a~t--gdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-  135 (334)
T KOG0278|consen   61 AVWSATLNKNATRAASAAADFTAKVWDAVT--GDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-  135 (334)
T ss_pred             ceeeeecCchhhhhhhhcccchhhhhhhhh--hhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-
Confidence            688889988888999999999999999844  6666655  57888999999999999999999999999999855433 


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  260 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~  260 (350)
                                             ...+.+|. +.|..+.|....+.|++++.| ++|++||.+++........+.+|.++
T Consensus       136 -----------------------p~E~~ght-g~Ir~v~wc~eD~~iLSSadd-~tVRLWD~rTgt~v~sL~~~s~VtSl  190 (334)
T KOG0278|consen  136 -----------------------PKEISGHT-GGIRTVLWCHEDKCILSSADD-KTVRLWDHRTGTEVQSLEFNSPVTSL  190 (334)
T ss_pred             -----------------------chhhcCCC-CcceeEEEeccCceEEeeccC-CceEEEEeccCcEEEEEecCCCCcce
Confidence                                   22366776 799999999999999998888 69999999999998888888999999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC--C-Cceeec
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--S-LDAHLL  337 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~  337 (350)
                      ..+++|++|..+ ..+.|.+||.++............|.+.+.+|+...++ +++.+..++..++....-  . -.+|-.
T Consensus       191 Evs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV-aGged~~~~kfDy~TgeEi~~~nkgh~g  268 (334)
T KOG0278|consen  191 EVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV-AGGEDFKVYKFDYNTGEEIGSYNKGHFG  268 (334)
T ss_pred             eeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEE-ecCcceEEEEEeccCCceeeecccCCCC
Confidence            999999876554 56789999999988876666677899999999885555 555666777777764322  3 368888


Q ss_pred             ccccceee
Q 018806          338 PVDLPDIV  345 (350)
Q Consensus       338 ~v~~~~~~  345 (350)
                      ||.+..+.
T Consensus       269 pVhcVrFS  276 (334)
T KOG0278|consen  269 PVHCVRFS  276 (334)
T ss_pred             ceEEEEEC
Confidence            88766554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.3e-19  Score=142.34  Aligned_cols=219  Identities=12%  Similarity=0.171  Sum_probs=154.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ..|+.||+.|.+||+|..||.+.|||+.+..   +.....+|..+|.+++||+||+.|++++.|..+.+||+..+.....
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            7899999999999999999999999997532   3444468999999999999999999999999999999996665544


Q ss_pred             eecccccccceecCCCCC--ceE---------Ee-------eecc----CCCCCceeeEEECCCCCeEEEEEeCCCeEEE
Q 018806          182 VRSGAASFLGALSRGPGT--RWT---------LV-------DFLR----SQNGEQITALSWGPDGRYLASASYESSSFTI  239 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~--~~~---------~~-------~~~~----~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~i  239 (350)
                      +.-..  ++....+-+..  +..         +.       ..+.    +..+....+..|.+.|++|++|... |.+.+
T Consensus       103 irf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK-Gkllv  179 (405)
T KOG1273|consen  103 IRFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK-GKLLV  179 (405)
T ss_pred             EEccC--ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc-ceEEE
Confidence            43221  11111111110  000         00       0011    1111222344688999999999988 89999


Q ss_pred             EeCCCCCceeeee-c-CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC-------Cceec---cc--cCCCCeEEEEEcC
Q 018806          240 WDVAQGLGTPIRR-G-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-------WTSEP---WS--STSGFVTGATWDP  305 (350)
Q Consensus       240 wd~~~~~~~~~~~-~-~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~-------~~~~~---~~--~~~~~v~~~~~s~  305 (350)
                      +|..+.++..-.. . ...|.++.++..|++|+.-+.|+.|+.|+++.       ++...   +.  -....-.++.||.
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            9999987765333 2 36789999999999999999999999998862       12211   11  1122335788999


Q ss_pred             CCCEEEEEECCCeEEEEEEeC
Q 018806          306 EGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       306 ~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +|.|++.++...-.+|.|...
T Consensus       260 dgeYv~a~s~~aHaLYIWE~~  280 (405)
T KOG1273|consen  260 DGEYVCAGSARAHALYIWEKS  280 (405)
T ss_pred             CccEEEeccccceeEEEEecC
Confidence            999999888666666766544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.83  E-value=3.6e-19  Score=160.71  Aligned_cols=197  Identities=16%  Similarity=0.247  Sum_probs=156.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|+++++..-+.+|++|+.|.++++||.  .++.+...+ .+|...|.++...+.  .++.++.|.+|++|+++.+.   
T Consensus       251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~--~sg~C~~~l-~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~---  322 (537)
T KOG0274|consen  251 GVWGLAFPSGGDKLVSGSTDKTERVWDC--STGECTHSL-QGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGA---  322 (537)
T ss_pred             CceeEEEecCCCEEEEEecCCcEEeEec--CCCcEEEEe-cCCCceEEEEEccCc--eEeeccCCceEEEEeccCcc---
Confidence            5999999887899999999999999997  458888877 489999999887643  55566779999999999433   


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  259 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~  259 (350)
                                            ++..+.+|. +.|.++..+  +..+++++.| |+|++||+.++++.. +.+|...|.+
T Consensus       323 ----------------------~l~l~~~h~-~~V~~v~~~--~~~lvsgs~d-~~v~VW~~~~~~cl~sl~gH~~~V~s  376 (537)
T KOG0274|consen  323 ----------------------CLNLLRGHT-GPVNCVQLD--EPLLVSGSYD-GTVKVWDPRTGKCLKSLSGHTGRVYS  376 (537)
T ss_pred             ----------------------eEEEecccc-ccEEEEEec--CCEEEEEecC-ceEEEEEhhhceeeeeecCCcceEEE
Confidence                                  355567775 799999998  7899999999 699999999998865 5678899999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCC-ce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCce
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDA  334 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~  334 (350)
                      +.+... ..+++|+.|++|++||+++. ++ ..+..|...+..+.  ..+++|+++. ++.+.+|+..-......+.+
T Consensus       377 l~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  377 LIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             EEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence            988765 78999999999999999999 66 56778888776555  4577888776 55455554444444334444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.83  E-value=3.1e-19  Score=141.91  Aligned_cols=213  Identities=13%  Similarity=0.264  Sum_probs=153.1

Q ss_pred             ccccccCCC-CcCCCCccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCC--------ceeEe----cCCCCCCeeE
Q 018806           84 SIKPLLHPD-HVHLLPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGK--------DACIL----TSDSQRDVKV  149 (350)
Q Consensus        84 ~~~~~~~p~-~~~~~~~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~--------~~~~~----~~~~~~~v~~  149 (350)
                      +....+.++ +-.-.++..|+++...+ .|+++++|+.||.|.+||+...+..        ..+.+    ..+|.-.|.+
T Consensus        27 il~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss  106 (397)
T KOG4283|consen   27 ILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISS  106 (397)
T ss_pred             hheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeee
Confidence            444444444 33445677899999987 5799999999999999999753311        11211    2257778999


Q ss_pred             EEEeeCCCeEEEE-ecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC---C
Q 018806          150 LEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG---R  225 (350)
Q Consensus       150 ~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~  225 (350)
                      +.|-|-+.-+++. +.|.+++|||..+-+....                         ++-  ++.|.+-+|||-.   -
T Consensus       107 ~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~-------------------------F~m--e~~VYshamSp~a~sHc  159 (397)
T KOG4283|consen  107 AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD-------------------------FKM--EGKVYSHAMSPMAMSHC  159 (397)
T ss_pred             eEEeeecCceeecccccceEEEeecccceeeEE-------------------------eec--CceeehhhcChhhhcce
Confidence            9999865555554 4599999999984433222                         221  2578888888843   3


Q ss_pred             eEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEE-EEEecCCeEEEEeCCCCc------------e---
Q 018806          226 YLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWT------------S---  288 (350)
Q Consensus       226 ~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~iwd~~~~~------------~---  288 (350)
                      .+|++..+ -.|++.|+.+|.... +.+|.+.|.++.|+|...++ ++|+.||.|++||++...            .   
T Consensus       160 LiA~gtr~-~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~  238 (397)
T KOG4283|consen  160 LIAAGTRD-VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI  238 (397)
T ss_pred             EEEEecCC-CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence            45666666 499999999998765 56788999999999998875 789999999999997531            1   


Q ss_pred             -eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          289 -EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       289 -~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                       +.-..|.+.+.+++|+.+|.++++++ ++.  +..|...
T Consensus       239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r--~r~wn~~  276 (397)
T KOG4283|consen  239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDR--IRVWNME  276 (397)
T ss_pred             ccccccccceeeeeeecccchhhhhccCccc--eEEeecc
Confidence             11236788999999999999999876 443  4444443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=6.3e-19  Score=140.96  Aligned_cols=209  Identities=11%  Similarity=0.109  Sum_probs=153.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++|.|+|.+..|++++.||.+++|++...  .....  ..|..++.+++|.++ ..+++++.||.|+.+|+..+..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~--~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLK--FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhh--eecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc
Confidence            346999999999999999999999999999643  22222  368899999999987 8899999999999999985433


Q ss_pred             Cce------eeccccc--ccceecCCCCCceEEeeeccC------CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC
Q 018806          179 AAS------VRSGAAS--FLGALSRGPGTRWTLVDFLRS------QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       179 ~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~  244 (350)
                      ...      +......  ...-++.+.+..+++|+.-..      ...+.|.++..  .|..|+.++.+. .+.+||+++
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r-~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDR-KVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCc-eEEEEEccc
Confidence            221      1111111  112266778888888875421      11245666655  467788888885 899999876


Q ss_pred             CC-------------------------------------------------ceeeeecC---------CCeEEEEEcCCC
Q 018806          245 GL-------------------------------------------------GTPIRRGF---------GGLSILKWSPTG  266 (350)
Q Consensus       245 ~~-------------------------------------------------~~~~~~~~---------~~v~~~~~sp~g  266 (350)
                      ..                                                 .-.+..|.         .+|.+++|+|--
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            40                                                 00111121         268899999998


Q ss_pred             CEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          267 DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       267 ~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      ..||+|+.||.|.+||+.+.+. .++......|.+++|+.+|..||++++
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            8999999999999999998876 456666778999999999999999863

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=4.3e-20  Score=160.94  Aligned_cols=205  Identities=13%  Similarity=0.185  Sum_probs=160.3

Q ss_pred             cCCCEEEEEECCCeEEEEEccCCCCC----ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeec
Q 018806          109 QHKHIVAFISGSTQVIVRDYEDSEGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  184 (350)
Q Consensus       109 p~g~~la~~s~d~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  184 (350)
                      |.+++|.+|+.||.|++|++......    ....+ ..|...|+.+....+++.++++++|-+|++|+......      
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------  107 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------  107 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence            46788999999999999998654332    12222 36889999999999989999999999999999984321      


Q ss_pred             ccccccceecCCCCCceEEeeeccCCCCCceeeEEE-CCCCCeEEEEEeCCCeEEEEeCCCCCc--e---------eee-
Q 018806          185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-GPDGRYLASASYESSSFTIWDVAQGLG--T---------PIR-  251 (350)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~~~~~d~g~i~iwd~~~~~~--~---------~~~-  251 (350)
                                       .+..++..|. ..|.+++. .++...+++|+.| +.|.+||++++..  .         .+. 
T Consensus       108 -----------------~c~stir~H~-DYVkcla~~ak~~~lvaSgGLD-~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen  108 -----------------FCMSTIRTHK-DYVKCLAYIAKNNELVASGGLD-RKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             -----------------hhHhhhhccc-chheeeeecccCceeEEecCCC-ccEEEEEccCcchhhhhhccccccccCCC
Confidence                             1345577776 69999999 8888999999999 5999999998732  1         111 


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCC
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKP  329 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~  329 (350)
                      ++...+++++.++.|..|++|+..+.+++||.++++. ..+.+|...|..+..++||+.+++++ ++.+.+|.+.-..+.
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            4557899999999999999999999999999999876 67889999999999999999999886 444444444333334


Q ss_pred             CCCceeeccc
Q 018806          330 PSLDAHLLPV  339 (350)
Q Consensus       330 ~~~~~~~~~v  339 (350)
                      .++..|...|
T Consensus       249 ~T~~vH~e~V  258 (735)
T KOG0308|consen  249 ATYIVHKEGV  258 (735)
T ss_pred             eeEEeccCce
Confidence            4666665443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.7e-19  Score=144.83  Aligned_cols=221  Identities=15%  Similarity=0.202  Sum_probs=162.9

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC-----
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS-----  174 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-----  174 (350)
                      ..|+.++-......+.+++.|.+.+||.++.  +.++..+ .+|.+.|++++|++.+..+++++.|++.+||...     
T Consensus       149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~Es--g~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v  225 (481)
T KOG0300|consen  149 DGIWHVAADSTQPICGTASADHTARIWSLES--GACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV  225 (481)
T ss_pred             cceeeehhhcCCcceeecccccceeEEeecc--ccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence            3678887777777899999999999999965  8887777 4899999999999998888888889999999843     


Q ss_pred             -CCCCCceeecc-------cccccceecCCCCC-ce-EEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC
Q 018806          175 -YPGNAASVRSG-------AASFLGALSRGPGT-RW-TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       175 -~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~  244 (350)
                       .+..+......       .......-....++ .+ ..+..+.+|. +.|.+..|-..|+.+++++.|. +..+||+++
T Consensus       226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~-~vV~a~dWL~gg~Q~vTaSWDR-TAnlwDVEt  303 (481)
T KOG0300|consen  226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR-AVVSACDWLAGGQQMVTASWDR-TANLWDVET  303 (481)
T ss_pred             CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc-cceEehhhhcCcceeeeeeccc-cceeeeecc
Confidence             11111100000       00000000111111 12 2345678886 7899999999999999999995 999999999


Q ss_pred             CCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 018806          245 GLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  321 (350)
Q Consensus       245 ~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  321 (350)
                      ++... +.+|....+.++-+|..+++++.+.|.+.++||++..-.  ..+.+|...|+++.|.-+.+. ++++++ ..+.
T Consensus       304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-VSgSDD-rTvK  381 (481)
T KOG0300|consen  304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-VSGSDD-RTVK  381 (481)
T ss_pred             CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-eecCCC-ceEE
Confidence            98775 557889999999999999999999999999999984322  457799999999999987664 445433 2444


Q ss_pred             EEEeCC
Q 018806          322 SIHFAS  327 (350)
Q Consensus       322 ~~~~~~  327 (350)
                      .|++.+
T Consensus       382 vWdLrN  387 (481)
T KOG0300|consen  382 VWDLRN  387 (481)
T ss_pred             Eeeecc
Confidence            444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.7e-18  Score=138.47  Aligned_cols=195  Identities=18%  Similarity=0.305  Sum_probs=128.9

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec-CCCCCCeeEEEEee-C-CCeEEEEecCCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRP-N-GGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~sp-~-~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      -|+++.|.+.|+++|+|+.|++++|||.+..++...+.-. ..|.+.|..+.|.+ . |+.+++++.|+++.||.-....
T Consensus        15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~   94 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS   94 (361)
T ss_pred             eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence            3899999999999999999999999998665555433321 36999999999954 3 6667777889999999763111


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEE----------------
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTI----------------  239 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~i----------------  239 (350)
                      ...                ....|....++.... +.|+++.|.|.  |-.+++++.| |.++|                
T Consensus        95 ~~~----------------~~~~Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~aD-G~lRIYEA~dp~nLs~W~Lq~  156 (361)
T KOG2445|consen   95 EEA----------------HGRRWVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAASAD-GILRIYEAPDPMNLSQWTLQH  156 (361)
T ss_pred             ccc----------------ccceeEEEEEeecCC-cceeEEEecchhcceEEEEeccC-cEEEEEecCCccccccchhhh
Confidence            000                011233333333332 34444444442  3334444444 34444                


Q ss_pred             -----------------------------------------------EeCCCCC--c---eeeeecCCCeEEEEEcCC-C
Q 018806          240 -----------------------------------------------WDVAQGL--G---TPIRRGFGGLSILKWSPT-G  266 (350)
Q Consensus       240 -----------------------------------------------wd~~~~~--~---~~~~~~~~~v~~~~~sp~-g  266 (350)
                                                                     |....+.  .   ..+..+..+|+.++|.|+ |
T Consensus       157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G  236 (361)
T KOG2445|consen  157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG  236 (361)
T ss_pred             hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence                                                           4433322  1   123356778999999996 3


Q ss_pred             ---CEEEEEecCCeEEEEeCCCCc---------------------eeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          267 ---DYFFAAKFDGTFYLWETNTWT---------------------SEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       267 ---~~l~~~~~d~~v~iwd~~~~~---------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                         ..||+++.|| |+||+++...                     ...+..|.+.|+.+.|+-.|..|++++
T Consensus       237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG  307 (361)
T KOG2445|consen  237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG  307 (361)
T ss_pred             CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence               4689999999 9999987411                     012447899999999999999998775

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.83  E-value=9.5e-19  Score=137.31  Aligned_cols=215  Identities=15%  Similarity=0.135  Sum_probs=161.3

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCcc-----------------------CeeEEEEecCCCEEEEEEC-----CCeEE
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEV-----------------------DLQGVSWHQHKHIVAFISG-----STQVI  124 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~-----------------------~V~~v~~sp~g~~la~~s~-----d~~i~  124 (350)
                      .+.++.||.+.+++....-....++.+.                       +|..+.|+++|++++....     .+.|.
T Consensus        44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~  123 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVS  123 (327)
T ss_pred             eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence            4678999999887766555544444432                       6888888888887776543     46777


Q ss_pred             EEEccCCC----CCc-eeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCC
Q 018806          125 VRDYEDSE----GKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  199 (350)
Q Consensus       125 iw~~~~~~----~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (350)
                      ++|+....    .+. ...+ ..+...++.+-|.|-++.++++..+|.|.+||++.+..                     
T Consensus       124 ~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~---------------------  181 (327)
T KOG0643|consen  124 VFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE---------------------  181 (327)
T ss_pred             EEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce---------------------
Confidence            88876322    222 2333 35678899999999999999998999999999985433                     


Q ss_pred             ceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCC--e
Q 018806          200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG--T  277 (350)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--~  277 (350)
                         +++..+.|. ..|+++.++||..++++++.|. +-++||..+-+.........++.+.+++|.-.+++.|+.-.  .
T Consensus       182 ---~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~Dt-takl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~d  256 (327)
T KOG0643|consen  182 ---LVDSDEEHS-SKINDLQFSRDRTYFITGSKDT-TAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMD  256 (327)
T ss_pred             ---eeechhhhc-cccccccccCCcceEEecccCc-cceeeeccceeeEEEeeecccccceecccccceEEecCCceeee
Confidence               234445565 6999999999999999999996 99999999998888888889999999999888877665332  3


Q ss_pred             EEEEeCCCCce-------------eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          278 FYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       278 v~iwd~~~~~~-------------~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      |.--+.+.++.             -...+|-++|++++|+|+|+..++|+
T Consensus       257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence            33333344432             23458999999999999999988775

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.7e-19  Score=152.71  Aligned_cols=218  Identities=16%  Similarity=0.168  Sum_probs=167.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .-.|++......++++|+..+.|+|||+.   .+.......+|...|+++.++..+.++++++..|.|.|..+.++....
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~---~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLR---AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhH---HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence            34455555555899999999999999995   455566667899999999999887788777777999999988665543


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee--eeecCCCeE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLS  258 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~--~~~~~~~v~  258 (350)
                      .+...                         .+..|.-+.|+|..++++....|+|.|.+||+.......  ...|..+..
T Consensus       158 ~f~~~-------------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~  212 (673)
T KOG4378|consen  158 TFTID-------------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR  212 (673)
T ss_pred             ceecC-------------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence            33222                         234667899999988877666666999999998776543  445788899


Q ss_pred             EEEEcCCC-CEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCC-CCcee
Q 018806          259 ILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPP-SLDAH  335 (350)
Q Consensus       259 ~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~  335 (350)
                      .+||+|.. .+|++.+.|..|.+||....+.........+.+.++|+++|.+|++|. .+.+.-|+++....|. .+.+|
T Consensus       213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah  292 (673)
T KOG4378|consen  213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH  292 (673)
T ss_pred             cceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence            99999965 456888999999999999877765566678899999999999999887 4445555555554444 66788


Q ss_pred             ecccccceeec
Q 018806          336 LLPVDLPDIVS  346 (350)
Q Consensus       336 ~~~v~~~~~~~  346 (350)
                      ...|+...|..
T Consensus       293 ~~sVt~vafq~  303 (673)
T KOG4378|consen  293 DASVTRVAFQP  303 (673)
T ss_pred             ccceeEEEeee
Confidence            88888777654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1e-18  Score=158.01  Aligned_cols=212  Identities=20%  Similarity=0.315  Sum_probs=156.2

Q ss_pred             hhhhhhhccccccCCC--CcCCCC--ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE
Q 018806           77 LHGIISHSIKPLLHPD--HVHLLP--EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus        77 ~~gh~~~~~~~~~~p~--~~~~~~--~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (350)
                      +.|.....+.+.-+|.  ...++.  ..++++++|+-+|+++|.|+.|-.|++-+..+  ......+ .+|+++|.++.|
T Consensus        70 ~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~~~l-rgh~apVl~l~~  146 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQEKVL-RGHDAPVLQLSY  146 (933)
T ss_pred             EEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc--cchheee-cccCCceeeeeE
Confidence            3333344444555554  222343  46899999999999999999999999999865  3333444 589999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe
Q 018806          153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       153 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  232 (350)
                      +|++..|++++.||.|++|++..+.....+...                  ...........+..++|+|+|..++....
T Consensus       147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v------------------~k~n~~~~s~i~~~~aW~Pk~g~la~~~~  208 (933)
T KOG1274|consen  147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV------------------DKDNEFILSRICTRLAWHPKGGTLAVPPV  208 (933)
T ss_pred             cCCCCEEEEEecCceEEEEEcccchhhhhcccC------------------CccccccccceeeeeeecCCCCeEEeecc
Confidence            999888888888999999999844333222111                  00001111246778999999888888888


Q ss_pred             CCCeEEEEeCCCCCceeeee---cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCE
Q 018806          233 ESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRM  309 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~  309 (350)
                      | +.|++|+..+........   +...+..+.|+|+|+|||+++.||.|-|||.++-+.   ......|.+++|.|++.-
T Consensus       209 d-~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~  284 (933)
T KOG1274|consen  209 D-NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANA  284 (933)
T ss_pred             C-CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCe
Confidence            8 499999999887654332   334589999999999999999999999999998333   334567999999999887


Q ss_pred             EEEE
Q 018806          310 ILLA  313 (350)
Q Consensus       310 l~~~  313 (350)
                      |-+.
T Consensus       285 it~~  288 (933)
T KOG1274|consen  285 ITLI  288 (933)
T ss_pred             eEEE
Confidence            7654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.6e-20  Score=165.44  Aligned_cols=202  Identities=14%  Similarity=0.232  Sum_probs=160.9

Q ss_pred             CcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEe
Q 018806           93 HVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  172 (350)
Q Consensus        93 ~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd  172 (350)
                      .....+...|.++..-..++.+++|+.|..+.+|.+..  ......+ .+|..+|.++.|+++...++++..+|+|++||
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k--p~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK--PNAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccC--Cchhhee-eccCCcceeeecCcchhhhcccccCCceeeee
Confidence            34445555677777766788999999999999999853  2223333 58999999999999955555555589999999


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-  251 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-  251 (350)
                      ++...                         .++++.+|. ..+.++.|+|-+.+.+.++.| +.+++||++...+...+ 
T Consensus        99 leeAk-------------------------~vrtLtgh~-~~~~sv~f~P~~~~~a~gStd-td~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   99 LEEAK-------------------------IVRTLTGHL-LNITSVDFHPYGEFFASGSTD-TDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             hhhhh-------------------------hhhhhhccc-cCcceeeeccceEEecccccc-ccceehhhhccCceeeec
Confidence            98332                         244577886 689999999999999999999 69999999976666544 


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      .|...+..++|+|+|++++.+++|.+++|||...|+.. .+..|++.+..+.|+|..-+++.|+ +....+|++.
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            46788999999999999999999999999999999985 5667999999999999888888775 4444555544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=1.1e-18  Score=154.02  Aligned_cols=222  Identities=12%  Similarity=0.142  Sum_probs=167.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--C-CeEEEEecCCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--G-GRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~-~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ..+++++.||+|++||+|..-|+++||++..  -...+.+ ..|+..|.++.++.-  + +.|++++.|+-|+|||+...
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEEEEehh--hhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            4799999999999999999999999999953  3443444 479999999999843  2 34555666899999999744


Q ss_pred             CCCceeecccccccceecCCCC-----------CceEEeeecc---------CCC----CCceeeEEECCCCCeEEEEEe
Q 018806          177 GNAASVRSGAASFLGALSRGPG-----------TRWTLVDFLR---------SQN----GEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~---------~~~----~~~v~~~~~sp~g~~l~~~~~  232 (350)
                      -.......++.+.+..+.+...           ++..+.+..+         .|+    ...+++++..|..+++++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence            3333333333333333222211           1111122111         111    246789999999999999999


Q ss_pred             CCCeEEEEeCCCCCceeeee----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCC
Q 018806          233 ESSSFTIWDVAQGLGTPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g  307 (350)
                      |. .|+|||+.+++....+.    |.+....+...|.|-|||+...|+++.++|+-++++ .+..+|...|+.+.|.+|.
T Consensus       617 Dr-nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC  695 (1080)
T KOG1408|consen  617 DR-NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC  695 (1080)
T ss_pred             cc-ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence            95 99999999998876553    457788899999999999999999999999999998 5788999999999999999


Q ss_pred             CEEEEEECCCeEEEEEEeC
Q 018806          308 RMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~  326 (350)
                      +.|++.+ ++..|+.|++.
T Consensus       696 kHlISvs-gDgCIFvW~lp  713 (1080)
T KOG1408|consen  696 KHLISVS-GDGCIFVWKLP  713 (1080)
T ss_pred             hhheeec-CCceEEEEECc
Confidence            9998765 33467777665

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.9e-17  Score=127.11  Aligned_cols=222  Identities=16%  Similarity=0.200  Sum_probs=154.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCce--eEecCCCCCCeeEEEEeeC---CCeEEEEecC--CcEEEE
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRPN---GGRSLSVGCK--GGICIW  171 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d--~~v~iw  171 (350)
                      ...|+|.+|||+|++||+|++|++|++..++..+.+..  ...+.-|++.|..++|-.+   +..+++++..  .+|++-
T Consensus        89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t  168 (350)
T KOG0641|consen   89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT  168 (350)
T ss_pred             CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence            45799999999999999999999999998864332211  1112358999999999643   4456665554  455555


Q ss_pred             ecCCCCCCceeecccccccc---------eecCCCCCceEEee--------eccC------CCCCceeeEEECCCCCeEE
Q 018806          172 APSYPGNAASVRSGAASFLG---------ALSRGPGTRWTLVD--------FLRS------QNGEQITALSWGPDGRYLA  228 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--------~~~~------~~~~~v~~~~~sp~g~~l~  228 (350)
                      |...++... ...+....+.         -.+.+++..++.|+        ++..      -..+.|.+++..|.|+.|+
T Consensus       169 dc~~g~~~~-a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  169 DCGRGQGFH-ALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             ecCCCCcce-eecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence            554332222 2222221111         12334455555443        2211      1125789999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-----ccccCCCCeEEEE
Q 018806          229 SASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGFVTGAT  302 (350)
Q Consensus       229 ~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~v~~~~  302 (350)
                      ++..|+ ...+||++.+...+ +..|...|.++.|+|...++++++.|..|++-|+...-..     ....|...+..+.
T Consensus       248 sg~~ds-sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r  326 (350)
T KOG0641|consen  248 SGHADS-SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR  326 (350)
T ss_pred             eccCCC-ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence            999996 99999999988665 5568889999999999999999999999999999754322     2347888999999


Q ss_pred             EcCCCCEEEEEE-CCCeEEEE
Q 018806          303 WDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       303 ~s~~g~~l~~~~-~~~~~~~~  322 (350)
                      |+|..-.+++++ ++...+|.
T Consensus       327 wh~~d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  327 WHPQDFSFISSSADKTATLWA  347 (350)
T ss_pred             ecCccceeeeccCcceEEEec
Confidence            999887766654 55455443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=8.7e-19  Score=140.83  Aligned_cols=213  Identities=14%  Similarity=0.234  Sum_probs=163.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEcc----CCC------------------------------C----CceeEecCCC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYE----DSE------------------------------G----KDACILTSDS  143 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~----~~~------------------------------~----~~~~~~~~~~  143 (350)
                      |+++.|++.+.++++++.|++.+||...    .+.                              +    ..+..+ .+|
T Consensus       193 VNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH  271 (481)
T KOG0300|consen  193 VNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGH  271 (481)
T ss_pred             eeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-ecc
Confidence            9999999999999999999999999721    000                              0    011122 478


Q ss_pred             CCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC
Q 018806          144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  223 (350)
Q Consensus       144 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  223 (350)
                      ...|.+..|-..|+++++++.|.+..+||++++.                         +++.+.||. ...+.++-+|.
T Consensus       272 ~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-------------------------~v~~LtGHd-~ELtHcstHpt  325 (481)
T KOG0300|consen  272 RAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-------------------------VVNILTGHD-SELTHCSTHPT  325 (481)
T ss_pred             ccceEehhhhcCcceeeeeeccccceeeeeccCc-------------------------eeccccCcc-hhccccccCCc
Confidence            8899999999999999999999999999999544                         355577885 68899999999


Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCc--eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEE
Q 018806          224 GRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTG  300 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~  300 (350)
                      .+.+++++.|. +.++||++..-.  ..+++|...|++..|..+. .+++|+.|.+|+|||+++... ........++..
T Consensus       326 QrLVvTsSrDt-TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NR  403 (481)
T KOG0300|consen  326 QRLVVTSSRDT-TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANR  403 (481)
T ss_pred             ceEEEEeccCc-eeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccce
Confidence            99999999995 999999995432  3466788999999999776 488999999999999998765 445566788999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEEEeCCCC----C--CCceeeccccccee
Q 018806          301 ATWDPEGRMILLAFAGSLTLGSIHFASKP----P--SLDAHLLPVDLPDI  344 (350)
Q Consensus       301 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~v~~~~~  344 (350)
                      ++.+..++.|+.-.++. .+..+++.+..    |  .-.+|..-|.+..+
T Consensus       404 vavs~g~~iIAiPhDNR-qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW  452 (481)
T KOG0300|consen  404 VAVSKGHPIIAIPHDNR-QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW  452 (481)
T ss_pred             eEeecCCceEEeccCCc-eEEEEecCCCccccCCcccccccceeeeeeec
Confidence            99999888888877654 45555554331    1  33466555554433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.81  E-value=4.9e-18  Score=153.46  Aligned_cols=205  Identities=18%  Similarity=0.228  Sum_probs=162.8

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...+.+..|+  ..++++++.+.+|++|+..  ++.....-..+|.+.|+++++..-+..+++++.|.++++||...+. 
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~--~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-  282 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLN--NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-  282 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeecc--cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence            3467888888  5678899999999999985  3666666457999999999997655678888889999999988554 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v  257 (350)
                                              +...+.+|. +.+.++...+  ..+++++.|. +|++|++.++....+.. |..+|
T Consensus       283 ------------------------C~~~l~gh~-stv~~~~~~~--~~~~sgs~D~-tVkVW~v~n~~~l~l~~~h~~~V  334 (537)
T KOG0274|consen  283 ------------------------CTHSLQGHT-SSVRCLTIDP--FLLVSGSRDN-TVKVWDVTNGACLNLLRGHTGPV  334 (537)
T ss_pred             ------------------------EEEEecCCC-ceEEEEEccC--ceEeeccCCc-eEEEEeccCcceEEEeccccccE
Confidence                                    355677776 6888887653  5677788996 99999999999888776 89999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC-CCCCCCce
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA-SKPPSLDA  334 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~-~~~~~~~~  334 (350)
                      .++..+  +.++++|+.|++|++||+.++++ ..+.+|...|.++.+... ..++.|+ ++.+.+|++... ....++.+
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence            999997  78999999999999999999998 568899999999988876 7777776 544444444444 33446777


Q ss_pred             eeccc
Q 018806          335 HLLPV  339 (350)
Q Consensus       335 ~~~~v  339 (350)
                      |..-+
T Consensus       412 h~~~v  416 (537)
T KOG0274|consen  412 HTSLV  416 (537)
T ss_pred             Ccccc
Confidence            76655

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=4.9e-18  Score=142.61  Aligned_cols=204  Identities=13%  Similarity=0.137  Sum_probs=165.1

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCC-ce-------------eEec-CCCCCCeeEEEEeeCCCeEEEE
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK-DA-------------CILT-SDSQRDVKVLEWRPNGGRSLSV  162 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~-~~-------------~~~~-~~~~~~v~~~~~sp~~~~l~~~  162 (350)
                      +...|.+++++|+.+++++++.+++|.=|++.+.... .+             .... ..|...+.+++.++||++++++
T Consensus       141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg  220 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG  220 (479)
T ss_pred             ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence            3568999999999999999999999999998642211 00             0111 2677889999999999999999


Q ss_pred             ecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC
Q 018806          163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       163 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~  242 (350)
                      +.|..|.||+..+...                         .+.+.+|. +.|.+++|-.....+++++.| ..|++|++
T Consensus       221 g~d~~v~Iw~~~t~eh-------------------------v~~~~ghr-~~V~~L~fr~gt~~lys~s~D-rsvkvw~~  273 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEH-------------------------VKVFKGHR-GAVSSLAFRKGTSELYSASAD-RSVKVWSI  273 (479)
T ss_pred             CCCceEEEecCcccch-------------------------hhcccccc-cceeeeeeecCccceeeeecC-CceEEEeh
Confidence            9999999999985544                         34467776 799999998888899999999 59999999


Q ss_pred             CCCCce-eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 018806          243 AQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  321 (350)
Q Consensus       243 ~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  321 (350)
                      +..... .+++|+..|..+.-..-++.+.+|+.|+++++|++.......+.++.+.+.+++|-.+. .+++|+++ ..|+
T Consensus       274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdn-G~Ia  351 (479)
T KOG0299|consen  274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDN-GSIA  351 (479)
T ss_pred             hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCC-ceEE
Confidence            876654 57889999999988888888888889999999999766667777888899999998765 45556644 4788


Q ss_pred             EEEeCCCCC
Q 018806          322 SIHFASKPP  330 (350)
Q Consensus       322 ~~~~~~~~~  330 (350)
                      .|.++.+.+
T Consensus       352 LWs~~KKkp  360 (479)
T KOG0299|consen  352 LWSLLKKKP  360 (479)
T ss_pred             EeeecccCc
Confidence            888888776

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=2.2e-18  Score=141.34  Aligned_cols=188  Identities=18%  Similarity=0.310  Sum_probs=135.2

Q ss_pred             CeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~  178 (350)
                      .=+++.|||-. ..|++|.--+.|++|...+...+.-..-+.+|...|-.++|||.... |++++.|++|+|||++...+
T Consensus       213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             cceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence            34788999933 34778877888999998654333223334479999999999997554 55566699999999996544


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce----eeeecC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGF  254 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~----~~~~~~  254 (350)
                      ...+.                       .+.| ++.|.-+.|+.+-.+|++|+.| |+++|||++.-+..    .+..|.
T Consensus       293 ~~~~~-----------------------~kAh-~sDVNVISWnr~~~lLasG~Dd-Gt~~iwDLR~~~~~~pVA~fk~Hk  347 (440)
T KOG0302|consen  293 KAAVS-----------------------TKAH-NSDVNVISWNRREPLLASGGDD-GTLSIWDLRQFKSGQPVATFKYHK  347 (440)
T ss_pred             cceeE-----------------------eecc-CCceeeEEccCCcceeeecCCC-ceEEEEEhhhccCCCcceeEEecc
Confidence            32221                       1445 4799999999988888888877 89999999975433    466789


Q ss_pred             CCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCce---------e--------ccccC--CCCeEEEEEcCCCCEEEEE
Q 018806          255 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS---------E--------PWSST--SGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       255 ~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~---------~--------~~~~~--~~~v~~~~~s~~g~~l~~~  313 (350)
                      .+|+++.|+|. ...|++++.|..|.|||+....-         .        -++-|  ...+-.+.|+++-.-++++
T Consensus       348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs  426 (440)
T KOG0302|consen  348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS  426 (440)
T ss_pred             CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence            99999999995 45678889999999999854221         0        12223  3457778888875544444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=5.5e-18  Score=148.97  Aligned_cols=222  Identities=18%  Similarity=0.267  Sum_probs=159.6

Q ss_pred             cCeeEEEEecCCC---EEEEEECCCeEEEEEccCCCCC----------------------cee------EecCCCCCCee
Q 018806          100 VDLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSEGK----------------------DAC------ILTSDSQRDVK  148 (350)
Q Consensus       100 ~~V~~v~~sp~g~---~la~~s~d~~i~iw~~~~~~~~----------------------~~~------~~~~~~~~~v~  148 (350)
                      ..|++++|...+.   +||++|+|..|+||.+...+..                      .+.      .+..+|+..|.
T Consensus       192 DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~  271 (764)
T KOG1063|consen  192 DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY  271 (764)
T ss_pred             hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE
Confidence            3588888876554   8899999999999987543200                      001      22348999999


Q ss_pred             EEEEeeCCCeEEEEecCCcEEEEecCCCCC--------------Cceeecccccccc--eecCCCCCceEEee-------
Q 018806          149 VLEWRPNGGRSLSVGCKGGICIWAPSYPGN--------------AASVRSGAASFLG--ALSRGPGTRWTLVD-------  205 (350)
Q Consensus       149 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------  205 (350)
                      ++.|+|.+..|++++.|+++.+|.......              ..-+..+.+.+..  -++.+..+.|.+|+       
T Consensus       272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w  351 (764)
T KOG1063|consen  272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW  351 (764)
T ss_pred             EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce
Confidence            999999988999999999999998763311              1111122222222  24444455555555       


Q ss_pred             ----eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC------------------------------------
Q 018806          206 ----FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG------------------------------------  245 (350)
Q Consensus       206 ----~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~------------------------------------  245 (350)
                          .+.||. ..|.+++|+|.|.+|++++.| .+-|+|-.-..                                    
T Consensus       352 ~~~~~iSGH~-~~V~dv~W~psGeflLsvs~D-QTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEK  429 (764)
T KOG1063|consen  352 TQEPVISGHV-DGVKDVDWDPSGEFLLSVSLD-QTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEK  429 (764)
T ss_pred             eecccccccc-ccceeeeecCCCCEEEEeccc-cceeeecccccccceeeecccccccccceeeehccCCceeeecccce
Confidence                456786 699999999999999999998 47776532200                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 018806          246 --------------------------------------------------------------------------------  245 (350)
Q Consensus       246 --------------------------------------------------------------------------------  245 (350)
                                                                                                      
T Consensus       430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL  509 (764)
T KOG1063|consen  430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL  509 (764)
T ss_pred             eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence                                                                                            


Q ss_pred             -------CceeeeecCCCeEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEE
Q 018806          246 -------LGTPIRRGFGGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       246 -------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~  312 (350)
                             +..++.+|...|++++.+|+|+++|+++..     ..|++|+..+.... .+..|.-.|+.++|||||++|++
T Consensus       510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence                   112334566679999999999999988653     47999999988774 48899999999999999999999


Q ss_pred             EE-CCCeEEEEE
Q 018806          313 AF-AGSLTLGSI  323 (350)
Q Consensus       313 ~~-~~~~~~~~~  323 (350)
                      .+ |....+|..
T Consensus       590 vsRDRt~sl~~~  601 (764)
T KOG1063|consen  590 VSRDRTVSLYEV  601 (764)
T ss_pred             eecCceEEeeee
Confidence            86 444555554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=7.3e-18  Score=145.95  Aligned_cols=239  Identities=17%  Similarity=0.251  Sum_probs=168.4

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..|.+++.+|.|.+||+|+.||+++||.+.+  +.++..+.  ..+.|.+++|+|.+.. +++++....+.|-+...+..
T Consensus       401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~  476 (733)
T KOG0650|consen  401 GLVRSISVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR  476 (733)
T ss_pred             CeEEEEEecCCcceeeecCCCCcEEEEEeec--ceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence            3699999999999999999999999999954  87777664  4668999999998654 55566666677777664422


Q ss_pred             Cceeecc-----c---ccccce-ecCCCC---CceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--CeEEEEeCCC
Q 018806          179 AASVRSG-----A---ASFLGA-LSRGPG---TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQ  244 (350)
Q Consensus       179 ~~~~~~~-----~---~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--g~i~iwd~~~  244 (350)
                      ...-.+.     .   ..+... ..+...   ....-+...-.| ...|..+.|+..|.+|++...++  ..|.|.++..
T Consensus       477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence            2111000     0   000000 111111   000011112223 47899999999999999886643  2788888876


Q ss_pred             CCce-eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          245 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       245 ~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      ...+ .+....+.+.++.|+|...+|++++ .+.|+|||+..+.. ..+......|.+|+.+|.|..|++++ ++....+
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~Wf  634 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWF  634 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence            6543 4555678899999999999988876 46799999988665 45666777899999999999999887 7777888


Q ss_pred             EEEeCCCCC-CCceeeccccccee
Q 018806          322 SIHFASKPP-SLDAHLLPVDLPDI  344 (350)
Q Consensus       322 ~~~~~~~~~-~~~~~~~~v~~~~~  344 (350)
                      ++++.+++. ++..|...++.-.+
T Consensus       635 DldlsskPyk~lr~H~~avr~Va~  658 (733)
T KOG0650|consen  635 DLDLSSKPYKTLRLHEKAVRSVAF  658 (733)
T ss_pred             EcccCcchhHHhhhhhhhhhhhhh
Confidence            888888775 66777777764433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.3e-17  Score=131.75  Aligned_cols=202  Identities=14%  Similarity=0.238  Sum_probs=135.3

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccce---------ecCCC--CCceE--------
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA---------LSRGP--GTRWT--------  202 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~--------  202 (350)
                      ...+.|.++.|+++|..+++++.|..+++||...+.....+...+......         +..+.  +..++        
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            356789999999999999998889999999999777777666553322211         11111  22332        


Q ss_pred             EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee------------------------------
Q 018806          203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------------------------------  252 (350)
Q Consensus       203 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~------------------------------  252 (350)
                      .++.+.||. ..|.+++.+|-+..+++++.|+ +|++||++..++.-+..                              
T Consensus        92 ylRYF~GH~-~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~  169 (311)
T KOG1446|consen   92 YLRYFPGHK-KRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDL  169 (311)
T ss_pred             eEEEcCCCC-ceEEEEEecCCCCeEEecccCC-eEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence            556789997 7999999999999999999995 99999999653221111                              


Q ss_pred             ----------------cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccC---CCCeEEEEEcCCCCEEEE
Q 018806          253 ----------------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST---SGFVTGATWDPEGRMILL  312 (350)
Q Consensus       253 ----------------~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~---~~~v~~~~~s~~g~~l~~  312 (350)
                                      .......+.|||||++|+.+...+.+++.|.-+|.... +..+   ..--.+..|+||++++++
T Consensus       170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~  249 (311)
T KOG1446|consen  170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLS  249 (311)
T ss_pred             cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEE
Confidence                            01234567788888888777777788888877777632 2222   112257889999999998


Q ss_pred             EEC-CCeEEEEEEeCCCCCCCce-eecccccceee
Q 018806          313 AFA-GSLTLGSIHFASKPPSLDA-HLLPVDLPDIV  345 (350)
Q Consensus       313 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  345 (350)
                      |.+ +.+.+|.++...+...+.+ +..++....++
T Consensus       250 gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn  284 (311)
T KOG1446|consen  250 GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN  284 (311)
T ss_pred             ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence            763 4455554433333223333 45555554443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=1.6e-17  Score=146.03  Aligned_cols=248  Identities=19%  Similarity=0.252  Sum_probs=172.2

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCcc-------------------------------CeeEEEEecCCCEEEEEECCCe
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPEV-------------------------------DLQGVSWHQHKHIVAFISGSTQ  122 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~~-------------------------------~V~~v~~sp~g~~la~~s~d~~  122 (350)
                      .+++.||.+-++...++|....++...                               ...+.-|+|+++.+++-+..|.
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence            477889999999888888875555432                               2567789999998888888999


Q ss_pred             EEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC--cee----------ecccccc-
Q 018806          123 VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA--ASV----------RSGAASF-  189 (350)
Q Consensus       123 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~----------~~~~~~~-  189 (350)
                      .++|.-..+..-.......+|.+.|.+++|+|.|+.|++++.|.+-|++--- +.+.  ..+          ....+-. 
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccC
Confidence            9999832211112223335899999999999999999999999777776432 0000  000          0000000 


Q ss_pred             cceecCCCCCc---------------------------------------------------------------------
Q 018806          190 LGALSRGPGTR---------------------------------------------------------------------  200 (350)
Q Consensus       190 ~~~~~~~~~~~---------------------------------------------------------------------  200 (350)
                      ...|..+.+.+                                                                     
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            00000000000                                                                     


Q ss_pred             ----------------eEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC----CeEEEEeCCCCCcee-eeecCCCeEE
Q 018806          201 ----------------WTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQGLGTP-IRRGFGGLSI  259 (350)
Q Consensus       201 ----------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~----g~i~iwd~~~~~~~~-~~~~~~~v~~  259 (350)
                                      |.-...+.||. ..|++++.+|+|+.+|+++...    -.|++|+..+-.... +..|.-.|+.
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHG-yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~  577 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHG-YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR  577 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCc-eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence                            01122456775 7999999999999999986542    279999998765544 7788899999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCce-----eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      ++|||||++|++.+.|+++.+|.......     .....|..-|+++.|+|++.++++++ |+...+|..
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            99999999999999999999998855433     12557888899999999999999886 444444433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=1.2e-17  Score=130.86  Aligned_cols=173  Identities=17%  Similarity=0.269  Sum_probs=127.0

Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceee-ccc-----------ccccceecCCCCCceEEeeecc
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR-SGA-----------ASFLGALSRGPGTRWTLVDFLR  208 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~  208 (350)
                      .+|...|.+++|+-+|.++++++.|+++.+|+++......... .+.           ..+..-++.+.+..+..|+.-.
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            4688899999999999999999999999999998432221111 111           1122224445555666665433


Q ss_pred             CC------CCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-------------------------------------
Q 018806          209 SQ------NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-------------------------------------  245 (350)
Q Consensus       209 ~~------~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-------------------------------------  245 (350)
                      +.      ..+.-.-+.|+|+|.+++.++.|+ .|.+.|.++.                                     
T Consensus        97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs  175 (313)
T KOG1407|consen   97 GKCTARIETKGENINITWSPDGEYIAVGNKDD-RITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS  175 (313)
T ss_pred             CcEEEEeeccCcceEEEEcCCCCEEEEecCcc-cEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence            32      112335689999999999999986 8888777643                                     


Q ss_pred             ----Cc-eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          246 ----LG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       246 ----~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                          +. ..+..|.....|+.|+|+|+++|+|+.|..+.+||++..-+ +.+..+.-+|..++||.||++||+++
T Consensus       176 ypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  176 YPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             ccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence                11 12334666778999999999999999999999999987766 44667889999999999999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.78  E-value=1.6e-16  Score=136.64  Aligned_cols=197  Identities=15%  Similarity=0.075  Sum_probs=136.3

Q ss_pred             CeeEEEEecCCCEEEEE-ECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~  178 (350)
                      .+..+.|+|+++.++++ +.++.+++||+..  ......+  .+...+.+++|+|+|..++++..+ ..+.+||......
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIET--RKVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCC--CeEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence            35678999999977665 4689999999953  3333333  233457889999998888777766 4567778763221


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-CCCeEEEEeCCCCCceeeee-c---
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR-G---  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~g~i~iwd~~~~~~~~~~~-~---  253 (350)
                      .                         ..+..  ...+..++|+|+|++|++++. + |.|++||+++++...... +   
T Consensus       150 ~-------------------------~~~~~--~~~~~~~~~s~dg~~l~~~~~~~-~~v~i~d~~~~~~~~~~~~~~~~  201 (300)
T TIGR03866       150 V-------------------------DNVLV--DQRPRFAEFTADGKELWVSSEIG-GTVSVIDVATRKVIKKITFEIPG  201 (300)
T ss_pred             E-------------------------EEEEc--CCCccEEEECCCCCEEEEEcCCC-CEEEEEEcCcceeeeeeeecccc
Confidence            1                         11111  134577999999998876654 6 799999999886543221 1   


Q ss_pred             ----CCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          254 ----FGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       254 ----~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                          ......++|+|+|++++++ +.++.+.+||+++++......+...+.+++|+|+|++|+++...+..+..|++...
T Consensus       202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence                1123468899999986544 45678999999988876544455678999999999999887644445666666543


Q ss_pred             C
Q 018806          329 P  329 (350)
Q Consensus       329 ~  329 (350)
                      .
T Consensus       282 ~  282 (300)
T TIGR03866       282 K  282 (300)
T ss_pred             c
Confidence            3

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1.7e-17  Score=137.05  Aligned_cols=207  Identities=17%  Similarity=0.259  Sum_probs=150.4

Q ss_pred             cCeeEEEEec-----CCCEEEEE---ECCCeEEEEEccCCCCCce--eEecCCCCCCeeEEEEeeCCCeEEEEec-CCcE
Q 018806          100 VDLQGVSWHQ-----HKHIVAFI---SGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGI  168 (350)
Q Consensus       100 ~~V~~v~~sp-----~g~~la~~---s~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v  168 (350)
                      ..|+.++|..     +.++||..   +..|...+.-+. +.|+..  .-+..+|.++|..++|+|-+...+++|+ |.+|
T Consensus        28 IrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~-k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v  106 (472)
T KOG0303|consen   28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLV-KTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKV  106 (472)
T ss_pred             eeeeeeeccccccccCCceEEEEEecCCCcceeecccc-cccccCCCCCCccCccccccccccCccCCceeecCCCCceE
Confidence            3566777653     45677763   334455454443 223221  1223489999999999997666666655 7999


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      .||.+...+....+..                  ....+.+|. ..|--++|+|- .+.|++++.|+ +|.+||+.+++.
T Consensus       107 ~vW~IPe~~l~~~lte------------------pvv~L~gH~-rrVg~V~wHPtA~NVLlsag~Dn-~v~iWnv~tgea  166 (472)
T KOG0303|consen  107 MVWQIPENGLTRDLTE------------------PVVELYGHQ-RRVGLVQWHPTAPNVLLSAGSDN-TVSIWNVGTGEA  166 (472)
T ss_pred             EEEECCCcccccCccc------------------ceEEEeecc-eeEEEEeecccchhhHhhccCCc-eEEEEeccCCce
Confidence            9999986655443322                  255688887 79999999996 45678888896 999999999987


Q ss_pred             eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc-ccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSG-FVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      .....|..-|++++|+.||.+|++.+.|+.|+|||.++++.... ..|.+ ....+.|-.+|. +++++-.......+-+
T Consensus       167 li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aL  245 (472)
T KOG0303|consen  167 LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIAL  245 (472)
T ss_pred             eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceec
Confidence            76666999999999999999999999999999999999998433 35543 456788999999 5555433445566666


Q ss_pred             CCC
Q 018806          326 ASK  328 (350)
Q Consensus       326 ~~~  328 (350)
                      |+.
T Consensus       246 wdp  248 (472)
T KOG0303|consen  246 WDP  248 (472)
T ss_pred             cCc
Confidence            653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2e-17  Score=139.30  Aligned_cols=198  Identities=16%  Similarity=0.131  Sum_probs=148.9

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccC-------CCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED-------SEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIW  171 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iw  171 (350)
                      +|+|+.|+-||.+|++|+.||.|.+|.+..       .+.+..+ .+.+|.-+|+++...+-  ..++++++.|.++++|
T Consensus       125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w  203 (476)
T KOG0646|consen  125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW  203 (476)
T ss_pred             ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence            599999999999999999999999998632       1222333 33589999999988654  3688999999999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC-----
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-----  246 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~-----  246 (350)
                      |+..+.....+.                           .+..+.+++.+|-++.+++|+.+ |.|.+.++..-.     
T Consensus       204 dlS~g~LLlti~---------------------------fp~si~av~lDpae~~~yiGt~~-G~I~~~~~~~~~~~~~~  255 (476)
T KOG0646|consen  204 DLSLGVLLLTIT---------------------------FPSSIKAVALDPAERVVYIGTEE-GKIFQNLLFKLSGQSAG  255 (476)
T ss_pred             EeccceeeEEEe---------------------------cCCcceeEEEcccccEEEecCCc-ceEEeeehhcCCccccc
Confidence            998543322221                           13689999999999999999999 799988775432     


Q ss_pred             ------------ceeeeecCC--CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEE
Q 018806          247 ------------GTPIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       247 ------------~~~~~~~~~--~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~  311 (350)
                                  ...+.+|.+  .|+|++.+-||..|++|+.||.|+|||+.+.++.+.. ...++|+.+.+.|=-+-.+
T Consensus       256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence                        112345655  8999999999999999999999999999998885444 3778999999976544444


Q ss_pred             EEECCCeEEEEEEeCC
Q 018806          312 LAFAGSLTLGSIHFAS  327 (350)
Q Consensus       312 ~~~~~~~~~~~~~~~~  327 (350)
                      .+....-.+..+++..
T Consensus       336 l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  336 LFEHKQPSLPNPHLKR  351 (476)
T ss_pred             cccccCccCCchHhhc
Confidence            4433333344444433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=3.6e-17  Score=130.65  Aligned_cols=160  Identities=16%  Similarity=0.308  Sum_probs=121.2

Q ss_pred             eEecCCCCCCeeEEEEeeCCCeEE-EEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCce
Q 018806          137 CILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  215 (350)
Q Consensus       137 ~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (350)
                      ..+.......|.+++|||....++ +++.|++||+|++...+....                       +....| +++|
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----------------------ka~~~~-~~Pv   75 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----------------------KAQQSH-DGPV   75 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----------------------hhhhcc-CCCe
Confidence            334445678899999999655566 555599999999985322211                       112334 4799


Q ss_pred             eeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCC--EEEEEecCCeEEEEeCCCCceecccc
Q 018806          216 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD--YFFAAKFDGTFYLWETNTWTSEPWSS  293 (350)
Q Consensus       216 ~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~d~~v~iwd~~~~~~~~~~~  293 (350)
                      .+++|+.||..+++++.| +.+++||+.+++...+..|.++|..+.|-+...  .|++|+.|++|+.||++.........
T Consensus        76 L~v~WsddgskVf~g~~D-k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~  154 (347)
T KOG0647|consen   76 LDVCWSDDGSKVFSGGCD-KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ  154 (347)
T ss_pred             EEEEEccCCceEEeeccC-CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence            999999999999999999 699999999999888999999999999987655  78999999999999999887755555


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          294 TSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       294 ~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      ..+.++++..-  ..++++++ +..+.++.+
T Consensus       155 LPeRvYa~Dv~--~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  155 LPERVYAADVL--YPMAVVATAERHIAVYNL  183 (347)
T ss_pred             ccceeeehhcc--CceeEEEecCCcEEEEEc
Confidence            55667666533  34566665 444444444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=3.1e-16  Score=140.86  Aligned_cols=215  Identities=14%  Similarity=0.166  Sum_probs=147.5

Q ss_pred             CeeEEEEecCCCEEEEEEC---CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CC--cEEEEecC
Q 018806          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KG--GICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~~  174 (350)
                      .+.+.+|||||+.||+.+.   +..+.+|++..  ++. ..+. ...+.+..++|+|||+++++... ++  .|++||+.
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--G~~-~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAV-RQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CCe-EEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            6889999999999998653   45688888854  432 2221 23344567899999998887654 44  58888886


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~  252 (350)
                      .+. ...                         +..+. ..+....|+|||+.|++.+.+.|  .|+++|+.++....+..
T Consensus       276 tg~-~~~-------------------------lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~  328 (429)
T PRK03629        276 SGQ-IRQ-------------------------VTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW  328 (429)
T ss_pred             CCC-EEE-------------------------ccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec
Confidence            322 111                         12222 45678999999999988876534  45555777776655544


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecC---CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC-CC-eEEEEEEeCC
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GS-LTLGSIHFAS  327 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-~~~~~~~~~~  327 (350)
                      ........+|+|||++|+..+.+   ..|++||+.+++...+... ....+..|+|||++|++++. +. ..++.+.+..
T Consensus       329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            44556678999999999876543   3688999998887655532 23457889999999999873 32 3466777765


Q ss_pred             CC-CCCceeecccccceeecc
Q 018806          328 KP-PSLDAHLLPVDLPDIVSL  347 (350)
Q Consensus       328 ~~-~~~~~~~~~v~~~~~~~~  347 (350)
                      .. ..+.+|...+..|.+.+.
T Consensus       408 ~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        408 RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCeEECccCCCCcCCcccCCC
Confidence            43 356677777777777653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.1e-16  Score=143.97  Aligned_cols=216  Identities=20%  Similarity=0.251  Sum_probs=141.3

Q ss_pred             cCeeEEEEecCCCEEEEEECC---CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~  175 (350)
                      ..+.+++|||||++|++++.+   ..|++||+..  +......  ...+....++|+|||+.++++.. ++.+.||.++.
T Consensus       204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS--GARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             CccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--CceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            368999999999999998754   3699999854  3322221  12233457899999988888764 67776665542


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC-ceeeeecC
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGF  254 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~-~~~~~~~~  254 (350)
                      ....                        ...+..+. ..+..+.|+|||+.|++++..+|...+|+++... ......+.
T Consensus       280 ~~~~------------------------~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~  334 (429)
T PRK01742        280 NGGT------------------------PSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR  334 (429)
T ss_pred             CCCC------------------------eEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC
Confidence            2111                        11123332 4678899999999988777544677888765322 22223333


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE-EEeCCC-CCC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGS-IHFASK-PPS  331 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~-~~~~~~-~~~  331 (350)
                      .  ..+.|+|||++|++.+.++ +.+||+.+++...+... ....+++|+|||++|++++ ++...++. +..... ...
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            3  4678999999998887765 56699999876544322 2345788999999999987 44444333 333333 235


Q ss_pred             Cceeecccccceeeccc
Q 018806          332 LDAHLLPVDLPDIVSLT  348 (350)
Q Consensus       332 ~~~~~~~v~~~~~~~~~  348 (350)
                      +..|...+..|.+++.-
T Consensus       411 l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        411 LPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             ccCCCCCCCCcccCCCC
Confidence            66777777778877654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.6e-17  Score=138.36  Aligned_cols=196  Identities=17%  Similarity=0.284  Sum_probs=143.2

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCcee
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  182 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~  182 (350)
                      .+++|+.+|..|++++.||++|||++..  ..... ....|.+.|.++.|+|||+.+++.+.| ..+||+...+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps--~~t~l-~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS--MLTIL-EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc--chhhh-hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            7899999999999999999999999742  22222 223688999999999999999999999 8999999965333222


Q ss_pred             ecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC---Ce-EEEEEeCCCeEEEEeCCCCCc------eeeee
Q 018806          183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG---RY-LASASYESSSFTIWDVAQGLG------TPIRR  252 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~-l~~~~~d~g~i~iwd~~~~~~------~~~~~  252 (350)
                      ...                       . .+.....+.|+.|+   .+ +++.....+.|+.||+.....      .....
T Consensus       224 t~~-----------------------~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~  279 (398)
T KOG0771|consen  224 TPF-----------------------S-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK  279 (398)
T ss_pred             CCc-----------------------c-cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence            111                       1 12455677777765   22 333333335666666543322      12223


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                      ....+++++.+++|++++.|+.||.|-|++..+.+...+.  .|...|+.+.|+||.++++..+ +....+..+...
T Consensus       280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            3568999999999999999999999999999988875543  6888999999999999998855 555666666653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=3.2e-16  Score=140.85  Aligned_cols=218  Identities=18%  Similarity=0.227  Sum_probs=143.3

Q ss_pred             ccCeeEEEEecCCCEEEEEECC---CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  174 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~  174 (350)
                      ...+.+.+|||||+.|++.+.+   ..|.+||+..  +.... +. ...+.+...+|+|||+.++.... ++...||.++
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~--g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT--GRRRV-VA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC--CCEEE-ee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            3468899999999999987753   4588889854  43322 22 23456678999999988876544 6777777665


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE--eCCCCCceeeee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW--DVAQGLGTPIRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw--d~~~~~~~~~~~  252 (350)
                      .....                        ...+..+. .......|+|||++|++.+...|...+|  ++.++....+..
T Consensus       271 ~~~~~------------------------~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~  325 (427)
T PRK02889        271 ADGSG------------------------LRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF  325 (427)
T ss_pred             CCCCC------------------------cEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence            32211                        11122222 3456789999999998877643555555  555555444433


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCC---eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEEEeCC
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDG---TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF--AGSLTLGSIHFAS  327 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~  327 (350)
                      ........+|+|||++|+..+.++   .|++||+.+++...+... .....+.|+|||++|+++.  .+...++.++...
T Consensus       326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence            333445689999999998776544   699999999887655433 3456789999999999987  3334577777655


Q ss_pred             CCC-CCceeecccccceeec
Q 018806          328 KPP-SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       328 ~~~-~~~~~~~~v~~~~~~~  346 (350)
                      ... .+..+...+..|.+.+
T Consensus       405 ~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        405 RIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             CceEEeecCCCCCCCCccCC
Confidence            433 3333444555666554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=1e-16  Score=132.46  Aligned_cols=204  Identities=19%  Similarity=0.309  Sum_probs=153.8

Q ss_pred             ccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCC----CCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEe
Q 018806           99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSE----GKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWA  172 (350)
Q Consensus        99 ~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd  172 (350)
                      ..+|..++|+| +.+.||+||.|.+|.||.+..+.    -........+|...|.-++|+|... .|+++|.|++|.+||
T Consensus        81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWn  160 (472)
T KOG0303|consen   81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWN  160 (472)
T ss_pred             cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEe
Confidence            45799999999 45789999999999999985321    1122333458999999999999754 466777899999999


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-  251 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-  251 (350)
                      +.++....                         ++. | +..|.++.|+.||.+|++++.|+ .|+|||.++++..... 
T Consensus       161 v~tgeali-------------------------~l~-h-pd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  161 VGTGEALI-------------------------TLD-H-PDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             ccCCceee-------------------------ecC-C-CCeEEEEEeccCCceeeeecccc-eeEEEcCCCCcEeeecc
Confidence            99654321                         133 4 47999999999999999999996 9999999999876533 


Q ss_pred             ecCC-CeEEEEEcCCCCEEEEE---ecCCeEEEEeCCCCce---eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          252 RGFG-GLSILKWSPTGDYFFAA---KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       252 ~~~~-~v~~~~~sp~g~~l~~~---~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      .|.+ ....+.|-.+|.++.+|   ..++.+.+||..+-+.   .+.....+.|.-.-|.+|...|+.++.++..|.-..
T Consensus       213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence            4543 35567788899855555   2477999999877554   233345667777789999999999987777777777


Q ss_pred             eCCCCC
Q 018806          325 FASKPP  330 (350)
Q Consensus       325 ~~~~~~  330 (350)
                      +...++
T Consensus       293 it~d~P  298 (472)
T KOG0303|consen  293 ITNEPP  298 (472)
T ss_pred             ecCCCc
Confidence            666554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.76  E-value=3.8e-17  Score=137.30  Aligned_cols=201  Identities=16%  Similarity=0.223  Sum_probs=151.4

Q ss_pred             ccCeeEEEEecCC--CEEEEEECCCeEEEEEccCCCC-CceeEecCCCCCCeeEEEEeeCC-CeEEEEecCCcEEEEecC
Q 018806           99 EVDLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPS  174 (350)
Q Consensus        99 ~~~V~~v~~sp~g--~~la~~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~  174 (350)
                      ...|++++|+|..  +++|+|...|.|-+||+..... .....+...|..+|.++.|+|.+ .++++++.||+|++-|++
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~  265 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE  265 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence            3479999999976  5888899999999999952111 12233445799999999999964 467888889999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc--eeeee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~  252 (350)
                      .... ..+..                      +... .....++.|+.+.+.++++..- |...+||.+++..  ..+.-
T Consensus       266 ~~i~-e~v~s----------------------~~~d-~~~fs~~d~~~e~~~vl~~~~~-G~f~~iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  266 GNIS-EEVLS----------------------LDTD-NIWFSSLDFSAESRSVLFGDNV-GNFNVIDLRTDGSEYENLRL  320 (498)
T ss_pred             chhh-HHHhh----------------------cCcc-ceeeeeccccCCCccEEEeecc-cceEEEEeecCCccchhhhh
Confidence            3221 11111                      1111 2466788898888888888887 6999999998754  34556


Q ss_pred             cCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCce-----eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          253 GFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      |...|.+++++|... +||+++.|++.+|||++.-..     .....|...|.++.|||.|-.|++.+ +..+.+++..
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            778999999999755 579999999999999986443     23457889999999999988888777 6666666663

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=1.3e-16  Score=126.85  Aligned_cols=190  Identities=12%  Similarity=0.280  Sum_probs=138.8

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec----CCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT----SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      .|.|+.|.|++..||+-. |..|.+|+++..... ...+.    .++....++-+|+| .....+++..|+++..||+++
T Consensus       125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT  202 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT  202 (370)
T ss_pred             ceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence            589999999999998754 888999999743221 22221    13556788999999 345667778899999999995


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc--eeeeec
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRG  253 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~~  253 (350)
                      ..+...+.                        ..| ...|.++.|+|+-++++..+.|+|.|++||.+..+.  ..+..|
T Consensus       203 ~~~~~sI~------------------------dAH-gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H  257 (370)
T KOG1007|consen  203 MKKNNSIE------------------------DAH-GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH  257 (370)
T ss_pred             hhhhcchh------------------------hhh-cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence            54433322                        223 468999999999877554444448999999997653  345578


Q ss_pred             CCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCC------------------------------ceeccccCCCCeEEEE
Q 018806          254 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTW------------------------------TSEPWSSTSGFVTGAT  302 (350)
Q Consensus       254 ~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~------------------------------~~~~~~~~~~~v~~~~  302 (350)
                      ...|.++.|+|. .++|++++.|..|.+|...+-                              ...++..|+..|++++
T Consensus       258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a  337 (370)
T KOG1007|consen  258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA  337 (370)
T ss_pred             ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence            899999999996 556789999999999965321                              1123346889999999


Q ss_pred             EcCCCCEEEEEECCC
Q 018806          303 WDPEGRMILLAFAGS  317 (350)
Q Consensus       303 ~s~~g~~l~~~~~~~  317 (350)
                      ||.-..+++++-+-+
T Consensus       338 WSsadPWiFASLSYD  352 (370)
T KOG1007|consen  338 WSSADPWIFASLSYD  352 (370)
T ss_pred             eccCCCeeEEEeccC
Confidence            999999998775333

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.76  E-value=1.2e-17  Score=138.30  Aligned_cols=204  Identities=19%  Similarity=0.311  Sum_probs=152.9

Q ss_pred             ccCeeEEEEecCCC-EEEEEECCCeEEEEEccCCCCCc---ee---EecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEE
Q 018806           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKD---AC---ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  171 (350)
Q Consensus        99 ~~~V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~~~~---~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw  171 (350)
                      ..+|.++.|.++.. .||+|+.|..|+||.++......   ..   .....|...|+.+.|+|+|..+++++.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            44699999999876 99999999999999986432211   11   2223699999999999998888888888999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR  251 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~  251 (350)
                      .... ..+.  ..     .. -+.-....|..+..+.+|. ..|..++|+|++.++++++.|+ .+++||+..|+.....
T Consensus        93 k~~~-~~~~--~~-----d~-e~~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dn-s~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   93 KQGD-VRIF--DA-----DT-EADLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDN-SVRLWDVHAGQLLAIL  161 (434)
T ss_pred             EecC-cCCc--cc-----cc-hhhhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccc-eEEEEEeccceeEeec
Confidence            8762 1110  00     00 0111123588899999986 7999999999999999999996 9999999999887655


Q ss_pred             -ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec------c--------------ccC----CCCeEEEEEcCC
Q 018806          252 -RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------W--------------SST----SGFVTGATWDPE  306 (350)
Q Consensus       252 -~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~------~--------------~~~----~~~v~~~~~s~~  306 (350)
                       .|...+..++|.|-++++++-+.|+..+++.+...+...      +              ..|    ..-...++|+||
T Consensus       162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd  241 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD  241 (434)
T ss_pred             cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence             577889999999999999999988877777665433210      0              011    123467899999


Q ss_pred             CCEEEEE
Q 018806          307 GRMILLA  313 (350)
Q Consensus       307 g~~l~~~  313 (350)
                      |.+|++.
T Consensus       242 G~llvtP  248 (434)
T KOG1009|consen  242 GSLLVTP  248 (434)
T ss_pred             CcEEEcc
Confidence            9999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.76  E-value=4.5e-16  Score=133.94  Aligned_cols=185  Identities=12%  Similarity=0.005  Sum_probs=131.1

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCCceeeccccccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      ..+++++.|+.+++||+.+  ++....+. .+ ..+..++|+|+++.+++++ .++.+++||.......           
T Consensus         2 ~~~~s~~~d~~v~~~d~~t--~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----------   66 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT--LEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-----------   66 (300)
T ss_pred             cEEEEecCCCEEEEEECCC--CceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----------
Confidence            5678889999999999854  55444443 33 3477899999988775554 4699999998743221           


Q ss_pred             ceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEE
Q 018806          191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF  270 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  270 (350)
                                    ..+..+  ..+..++|+|+++.+++++.+++.+++||+.+.+..........+.+++|+|+|++++
T Consensus        67 --------------~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        67 --------------GTLPSG--PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVV  130 (300)
T ss_pred             --------------EeccCC--CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEE
Confidence                          112222  2456789999999887665433699999999876555444445578899999999999


Q ss_pred             EEecCC-eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          271 AAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       271 ~~~~d~-~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +++.++ .+.+||.++++..........+..++|+|+|++|++++..+..+..|++..
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~  188 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT  188 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence            887765 577889988776433333345678999999999977764444566665543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=9e-17  Score=134.58  Aligned_cols=192  Identities=17%  Similarity=0.287  Sum_probs=144.4

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEec------------------CCCCCCeeEEEEeeCCCeEEEEec-CCcEEEE
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILT------------------SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIW  171 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~------------------~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iw  171 (350)
                      |+++|.|+.|..|.|||++..+...++...                  .+|...|.+++|+-.-+.++++|+ |.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            589999999999999999753332222221                  258888999999987677666655 8999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCce-e
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGT-P  249 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~~-~  249 (350)
                      |+..++..                         .++..| .+.|.++.|+|. ...|++|+.| |+|.+.|.+..... .
T Consensus       272 D~~~g~p~-------------------------~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D-~~V~l~D~R~~~~s~~  324 (463)
T KOG0270|consen  272 DVDTGKPK-------------------------SSITHH-GKKVQTLEWHPYEPSVLLSGSYD-GTVALKDCRDPSNSGK  324 (463)
T ss_pred             EcCCCCcc-------------------------eehhhc-CCceeEEEecCCCceEEEecccc-ceEEeeeccCccccCc
Confidence            99955442                         234434 479999999995 6788999999 69999999953322 2


Q ss_pred             eeecCCCeEEEEEcCCCCE-EEEEecCCeEEEEeCCCCc-e-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          250 IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWT-S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       250 ~~~~~~~v~~~~~sp~g~~-l~~~~~d~~v~iwd~~~~~-~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      .....+.|-.++|.|.... ++++..||+|+-+|++... . -++..|.++|.++++++.-..+++..+.+..+..|++.
T Consensus       325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            3345688999999997654 5677889999999999864 3 45778999999999999887777666555566666665


Q ss_pred             CCC
Q 018806          327 SKP  329 (350)
Q Consensus       327 ~~~  329 (350)
                      ...
T Consensus       405 ~~~  407 (463)
T KOG0270|consen  405 VDS  407 (463)
T ss_pred             CCC
Confidence            443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.4e-16  Score=138.42  Aligned_cols=208  Identities=16%  Similarity=0.236  Sum_probs=152.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +|.+++++.+.+.||.+-.+|.|.||++.. ..-....+..+.+..|.+++|++. .+|++++.+|.|.-||+...+...
T Consensus        27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             ceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeE
Confidence            699999999999999999999999999964 233334444456788999999955 899999999999999998444332


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee---eecCCCe
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI---RRGFGGL  257 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~---~~~~~~v  257 (350)
                      .+                         ... .+.|++++.+|.+..++.++.| |.+..++...+.....   ...++.+
T Consensus       105 ~~-------------------------d~~-gg~IWsiai~p~~~~l~Igcdd-Gvl~~~s~~p~~I~~~r~l~rq~sRv  157 (691)
T KOG2048|consen  105 NI-------------------------DSN-GGAIWSIAINPENTILAIGCDD-GVLYDFSIGPDKITYKRSLMRQKSRV  157 (691)
T ss_pred             Ee-------------------------cCC-CcceeEEEeCCccceEEeecCC-ceEEEEecCCceEEEEeecccccceE
Confidence            22                         222 4799999999999999999998 7888888877765432   2345889


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-----cc---c-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC--
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----WS---S-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA--  326 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-----~~---~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~--  326 (350)
                      .++.|+|++..|+.|+.||.|++||..++....     +.   . ...-|+++.|-.++. |++| |..+.+..|+..  
T Consensus       158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sg-DS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASG-DSAGTVTFWDSIFG  235 (691)
T ss_pred             EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEe-cCCceEEEEcccCc
Confidence            999999999999999999999999999887633     21   1 233578998887664 4434 333344444332  


Q ss_pred             CCCCCCceeeccc
Q 018806          327 SKPPSLDAHLLPV  339 (350)
Q Consensus       327 ~~~~~~~~~~~~v  339 (350)
                      ....+...|..-|
T Consensus       236 TLiqS~~~h~adV  248 (691)
T KOG2048|consen  236 TLIQSHSCHDADV  248 (691)
T ss_pred             chhhhhhhhhcce
Confidence            2223444454444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=7.4e-16  Score=139.13  Aligned_cols=215  Identities=18%  Similarity=0.204  Sum_probs=145.5

Q ss_pred             cCeeEEEEecCCCEEEEEEC---CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCc--EEEEec
Q 018806          100 VDLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGG--ICIWAP  173 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~--v~iwd~  173 (350)
                      ..+.+.+|+|||+.|++.+.   +..|.+|++..  +.. ..+ ..+.+.+...+|+|||+++++... ++.  |++||+
T Consensus       202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~--g~~-~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET--GQR-ELV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC--CcE-EEe-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            47899999999999998764   46899999854  432 223 245567889999999988876554 444  666676


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIR  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~  251 (350)
                      ..+. ..                         .+..+. .......|+|||+.|++.+..+|  .|++||+.++....+.
T Consensus       278 ~~~~-~~-------------------------~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt  330 (435)
T PRK05137        278 RSGT-TT-------------------------RLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS  330 (435)
T ss_pred             CCCc-eE-------------------------EccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence            6322 11                         122222 35667899999999998875433  6888898887766666


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecC---CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-----LTLGSI  323 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----~~~~~~  323 (350)
                      .+.+.+....|+|||++|+..+.+   ..|.+||+.++....+.. ...+..+.|+|||++|++.....     ..++.+
T Consensus       331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~  409 (435)
T PRK05137        331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV  409 (435)
T ss_pred             cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence            555667778999999999876543   368889987665544432 33567889999999998876322     368888


Q ss_pred             EeCCCCCCCceeecccccceeec
Q 018806          324 HFASKPPSLDAHLLPVDLPDIVS  346 (350)
Q Consensus       324 ~~~~~~~~~~~~~~~v~~~~~~~  346 (350)
                      ++.......-.....+..|.+.+
T Consensus       410 dl~g~~~~~l~~~~~~~~p~Wsp  432 (435)
T PRK05137        410 DLTGRNEREVPTPGDASDPAWSP  432 (435)
T ss_pred             ECCCCceEEccCCCCccCcccCC
Confidence            87654432111222344555543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.3e-16  Score=133.58  Aligned_cols=203  Identities=16%  Similarity=0.226  Sum_probs=146.5

Q ss_pred             CccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEecCC
Q 018806           98 PEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSY  175 (350)
Q Consensus        98 ~~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~  175 (350)
                      +...|-+++|+..- +.||+||.|.+|.+||++.  +++...+ ..|.+.|.++.|+|... .+++++.|++|.+.|.+.
T Consensus       242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--GKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             chHHHHHHHhccccceeEEecCCCceEEEEEcCC--CCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            34467788888764 6889999999999999965  6665555 36899999999999754 556666699999999985


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-Cce-eeeec
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGT-PIRRG  253 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-~~~-~~~~~  253 (350)
                      ..+.....                  +.        .+.|-.++|.|.....+.++.|+|+++-+|++.. ++. .+..|
T Consensus       319 ~~~s~~~w------------------k~--------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH  372 (463)
T KOG0270|consen  319 PSNSGKEW------------------KF--------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH  372 (463)
T ss_pred             ccccCceE------------------Ee--------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec
Confidence            33322211                  11        3689999999987776666666699999999986 444 36679


Q ss_pred             CCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCceeccccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          254 FGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       254 ~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      .++|.++++++.- .++++++.|+.|++|++..........|   -+...++++.|+-.++++.++....+..|++....
T Consensus       373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            9999999999864 4678999999999999976554333222   23467788888877655544333345555555443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.75  E-value=5.5e-17  Score=141.55  Aligned_cols=243  Identities=18%  Similarity=0.262  Sum_probs=156.5

Q ss_pred             CCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeE-ecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEec
Q 018806           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAP  173 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~  173 (350)
                      ++|-..|..+.|-|-..+|++++.|.++++||++.  ...... +..+|.+.|.+++|.|.+..+++.|. ||.|.|||+
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~--s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT--SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeecc--ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            45566899999999667899999999999999964  322222 34689999999999999777666555 899999999


Q ss_pred             CCCCCCceeecccccccceecC--CCCCc-eEEeeeccCCCCCceee---EEECCCCCeEEEEEe-CCCeEEEEeCCCCC
Q 018806          174 SYPGNAASVRSGAASFLGALSR--GPGTR-WTLVDFLRSQNGEQITA---LSWGPDGRYLASASY-ESSSFTIWDVAQGL  246 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~v~~---~~~sp~g~~l~~~~~-d~g~i~iwd~~~~~  246 (350)
                      +... ...+.............  .+... -.-...-..+. ..|.+   +.+..|...|++++. | +.|++||++...
T Consensus       175 R~n~-~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ssvTvv~fkDe~tlaSaga~D-~~iKVWDLRk~~  251 (720)
T KOG0321|consen  175 RCNG-VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSSVTVVLFKDESTLASAGAAD-STIKVWDLRKNY  251 (720)
T ss_pred             eccc-hhhHHHHhhhhhccccCCCCCCchhhcccccccccc-CceeeeeEEEEEeccceeeeccCCC-cceEEEeecccc
Confidence            8444 11111000000000000  00000 00001111222 34444   556678889999888 6 799999999764


Q ss_pred             cee---------eeec---CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCC------CeEEEEEcCCCC
Q 018806          247 GTP---------IRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSG------FVTGATWDPEGR  308 (350)
Q Consensus       247 ~~~---------~~~~---~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~s~~g~  308 (350)
                      ...         +..+   ..++.++.....|.+|++.+.|+.|++||+.+........+.+      .+. -..+||+.
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~  330 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDC  330 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCc
Confidence            321         1112   2457778888889999888889999999999877643332211      222 24699999


Q ss_pred             EEEEEE-CCCeEEEEEEeCCCCC-CCceeeccccccee
Q 018806          309 MILLAF-AGSLTLGSIHFASKPP-SLDAHLLPVDLPDI  344 (350)
Q Consensus       309 ~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  344 (350)
                      +|++|+ +...++|.+.-...++ .+.+|...|+...+
T Consensus       331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w  368 (720)
T KOG0321|consen  331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW  368 (720)
T ss_pred             eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee
Confidence            999987 6667777776655554 66688777765443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.1e-16  Score=134.76  Aligned_cols=194  Identities=15%  Similarity=0.226  Sum_probs=145.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+.....||++++||..+..|.|.|....  ++..+..+  ...+.|..++|+.+++.+++++.+|.|.+||++......
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhak--T~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~  380 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAK--TKELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH  380 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhh--hhhhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence            47778889999999999999999998874  35544444  356789999999999999999999999999999553322


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC----Cceeee---ec
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIR---RG  253 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~----~~~~~~---~~  253 (350)
                      .                         +.....-.-++++.|++|.+||+|+.. |.|.|||.++.    .+.++.   .-
T Consensus       381 r-------------------------f~D~G~v~gts~~~S~ng~ylA~GS~~-GiVNIYd~~s~~~s~~PkPik~~dNL  434 (514)
T KOG2055|consen  381 R-------------------------FVDDGSVHGTSLCISLNGSYLATGSDS-GIVNIYDGNSCFASTNPKPIKTVDNL  434 (514)
T ss_pred             E-------------------------EeecCccceeeeeecCCCceEEeccCc-ceEEEeccchhhccCCCCchhhhhhh
Confidence            2                         222111123567788999999999988 89999997653    222222   33


Q ss_pred             CCCeEEEEEcCCCCEEEEEec--CCeEEEEeCCCCce-eccc---cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          254 FGGLSILKWSPTGDYFFAAKF--DGTFYLWETNTWTS-EPWS---STSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~--d~~v~iwd~~~~~~-~~~~---~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      ...|.++.|++|+++||.++.  +..+++-.+.+.+. ..+.   ..-+.|++|+|||.|-+|++|. .+...+|.++
T Consensus       435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            578999999999999987765  66899998887766 2333   2345789999999999999997 4445555543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.4e-17  Score=154.23  Aligned_cols=203  Identities=17%  Similarity=0.327  Sum_probs=151.5

Q ss_pred             ccCeeEEEEecCCC-EEEEEECCCeEEEEEccCCCCCceeEe-cCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCC
Q 018806           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSY  175 (350)
Q Consensus        99 ~~~V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~  175 (350)
                      ...|..+.|++.+. +||+|+.||.|.|||++..  +..... .......|.+++|+..-+++++++.. |.+.|||++.
T Consensus       116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~--~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~  193 (1049)
T KOG0307|consen  116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP--ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK  193 (1049)
T ss_pred             CCceeeeeccccCCceeeccCCCCcEEEeccCCc--CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence            34599999999765 9999999999999999642  222222 22345789999999887888887775 8999999995


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEEEEeCCC--eEEEEeCCCCC--ceee
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESS--SFTIWDVAQGL--GTPI  250 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g--~i~iwd~~~~~--~~~~  250 (350)
                      .+.+-.+...                       + ....+..++|+|+. ..|++++.|++  .|.+||++...  ...+
T Consensus       194 ~~pii~ls~~-----------------------~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~  249 (1049)
T KOG0307|consen  194 KKPIIKLSDT-----------------------P-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL  249 (1049)
T ss_pred             CCcccccccC-----------------------C-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence            5433222211                       1 11458899999975 45666666643  79999988543  2334


Q ss_pred             eecCCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCE-EEEEE-CCCeEEEEEEeC
Q 018806          251 RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRM-ILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~-l~~~~-~~~~~~~~~~~~  326 (350)
                      ..|..+|.++.|++.+ ++|++++.|+.|.+||.++++.. .+.....++..+.|+|...- +++++ ++.+.|+.+.-.
T Consensus       250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            5789999999999976 78899999999999999999984 56667889999999998874 44444 777777777654


Q ss_pred             C
Q 018806          327 S  327 (350)
Q Consensus       327 ~  327 (350)
                      +
T Consensus       330 ~  330 (1049)
T KOG0307|consen  330 D  330 (1049)
T ss_pred             C
Confidence            4

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=5.5e-16  Score=139.78  Aligned_cols=214  Identities=16%  Similarity=0.188  Sum_probs=144.7

Q ss_pred             cCeeEEEEecCCCEEEEEECC---CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CC--cEEEEec
Q 018806          100 VDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KG--GICIWAP  173 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~  173 (350)
                      ..+.+.+|+|||+.|++.+.+   ..|.+|++..  +... .+. ...+...+++|+|||+++++... ++  .|++||+
T Consensus       204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~--g~~~-~l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT--GQRE-LVA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             CccccccCCCCCCEEEEEecCCCCcEEEEEECCC--CCEE-Eec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            368899999999999988743   4688899854  3322 222 33445668899999988876543 44  5888888


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIR  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~  251 (350)
                      ..+. ...                         +..+. .....++|+|||+.|++++...|  .|+++|+.+++...+.
T Consensus       280 ~~g~-~~~-------------------------lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        280 GSRQ-LTR-------------------------LTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT  332 (433)
T ss_pred             CCCC-eEE-------------------------CccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence            7332 111                         22222 34567899999999998875434  4777788777665554


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCC---eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeC
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDG---TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFA  326 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~  326 (350)
                      ........++|+|||++|+..+.++   .|++||+.+++...+.. ......+.|+|||++|++...  +...++.++..
T Consensus       333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            4444455789999999998765433   69999999888765543 334567899999999988763  34678888886


Q ss_pred             CCCC-CCceeecccccceee
Q 018806          327 SKPP-SLDAHLLPVDLPDIV  345 (350)
Q Consensus       327 ~~~~-~~~~~~~~v~~~~~~  345 (350)
                      +... .+..+...+..|.++
T Consensus       412 g~~~~~l~~~~g~~~~p~ws  431 (433)
T PRK04922        412 GRVRQRLVSADGEVREPAWS  431 (433)
T ss_pred             CCceEEcccCCCCCCCCccC
Confidence            5433 343344445555544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.75  E-value=1.1e-16  Score=140.98  Aligned_cols=205  Identities=13%  Similarity=0.116  Sum_probs=148.2

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeE-EEEee-CCCeEEEEecCCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-LEWRP-NGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      |..+++.+. .+++++|.||++++|+-..+.-... ....+|.+.|.. +++-+ ++.+++.++.|.++.+|...... +
T Consensus        17 Vr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-P   93 (745)
T KOG0301|consen   17 VRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-P   93 (745)
T ss_pred             hheeEecCC-eEEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCcceEeecccceEEEEecCCCC-c
Confidence            566665544 4788999999999999743222211 223456666666 77775 44568888889999999988333 2


Q ss_pred             ceeecccccccce---------ecCCCCCceEEee------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC
Q 018806          180 ASVRSGAASFLGA---------LSRGPGTRWTLVD------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       180 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~  244 (350)
                      ..+..++...+..         ++.+.|...++|.      .+.+|. ..|++++.-|++ .+++++.|+ +|++|.-.+
T Consensus        94 ~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~-asVWAv~~l~e~-~~vTgsaDK-tIklWk~~~  170 (745)
T KOG0301|consen   94 LYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHT-ASVWAVASLPEN-TYVTGSADK-TIKLWKGGT  170 (745)
T ss_pred             hhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcc-hheeeeeecCCC-cEEeccCcc-eeeeccCCc
Confidence            2222333322222         4445555544443      678897 799999999987 888999995 999998632


Q ss_pred             CCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          245 GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       245 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                       ....+.+|...|+.+++-+++. +++++.||.|++|++...-.....+|...+.+++..+++..+++++
T Consensus       171 -~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  171 -LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             -hhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence             2345667999999999988764 7788899999999996555678899999999999888888888775

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.75  E-value=5.6e-16  Score=137.12  Aligned_cols=242  Identities=16%  Similarity=0.164  Sum_probs=156.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC-----------CCeEEEEecCCcEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-----------GGRSLSVGCKGGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~~~d~~v~  169 (350)
                      +.-++.|++...+|.+..+|..++|||+...+..-.+.....|...|+++.--|-           ...+++++.|++|+
T Consensus       326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR  405 (1080)
T KOG1408|consen  326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR  405 (1080)
T ss_pred             ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence            4678899999999999999999999999754432222222357788887766541           13588899999999


Q ss_pred             EEecCCCCCCceeeccccccc-ceecCCCCC------------ceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCe
Q 018806          170 IWAPSYPGNAASVRSGAASFL-GALSRGPGT------------RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS  236 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~  236 (350)
                      +|++....+-......-.+.. ..+....+.            .-.....+.+.  ..+.+++.||+|++|++|..- |+
T Consensus       406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r--~G~R~~~vSp~gqhLAsGDr~-Gn  482 (1080)
T KOG1408|consen  406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSR--FGFRALAVSPDGQHLASGDRG-GN  482 (1080)
T ss_pred             EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcc--cceEEEEECCCcceecccCcc-Cc
Confidence            999985333222111100000 000000000            00011112221  367777777777777777666 67


Q ss_pred             EEEEeCCCC-----------------------------------------------------------------------
Q 018806          237 FTIWDVAQG-----------------------------------------------------------------------  245 (350)
Q Consensus       237 i~iwd~~~~-----------------------------------------------------------------------  245 (350)
                      +++|++..-                                                                       
T Consensus       483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence            777776432                                                                       


Q ss_pred             ----------------C----ceeee-e----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc----cCCC
Q 018806          246 ----------------L----GTPIR-R----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----STSG  296 (350)
Q Consensus       246 ----------------~----~~~~~-~----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~  296 (350)
                                      +    ...+. .    .+..++.++..|..+++++++.|+.|+|||+++++....+    .|++
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG  642 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence                            0    00000 0    1134677888888899999999999999999999985433    5677


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCceeecccccceee
Q 018806          297 FVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  345 (350)
                      ....+...|.|.||++++ ++...++++.-........+|.-.|++..|.
T Consensus       643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            888899999999999988 5555555555555566888999888876654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=5.5e-16  Score=124.67  Aligned_cols=183  Identities=16%  Similarity=0.147  Sum_probs=138.3

Q ss_pred             EEEEECCCeEEEEEccCCC----CC-ce----eEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeec
Q 018806          114 VAFISGSTQVIVRDYEDSE----GK-DA----CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  184 (350)
Q Consensus       114 la~~s~d~~i~iw~~~~~~----~~-~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  184 (350)
                      |++|++...|.-++++...    .. ..    .-....|.++|++++.+  +.++++++.|.+|+|||+........   
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~---   78 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGI---   78 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcc---
Confidence            6677888777666664322    01 11    11123689999999986  57888888899999999985544332   


Q ss_pred             ccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC--eEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEE
Q 018806          185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK  261 (350)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~  261 (350)
                                            +..|. +.|+++.|.+.-.  +|++++.| |.|.+|+...-.... +..|.+.|+.++
T Consensus        79 ----------------------ll~Ha-gsitaL~F~~~~S~shLlS~sdD-G~i~iw~~~~W~~~~slK~H~~~Vt~ls  134 (362)
T KOG0294|consen   79 ----------------------LLSHA-GSITALKFYPPLSKSHLLSGSDD-GHIIIWRVGSWELLKSLKAHKGQVTDLS  134 (362)
T ss_pred             ----------------------eeccc-cceEEEEecCCcchhheeeecCC-CcEEEEEcCCeEEeeeecccccccceeE
Confidence                                  44454 7999999998765  89999999 799999998876554 667888899999


Q ss_pred             EcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       262 ~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      .+|.|++.++.+.|+.++.||+-.|+......-....+.+.|+|.|.++++...+.+.+|.++.
T Consensus       135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~  198 (362)
T KOG0294|consen  135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDN  198 (362)
T ss_pred             ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEeccc
Confidence            9999999999999999999999988874444334445568999999988888766666666554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.74  E-value=7.4e-17  Score=135.58  Aligned_cols=189  Identities=17%  Similarity=0.233  Sum_probs=138.6

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +.+|.++.|+|.. ..+++.|.||+|++-|++......+.... .....+.++.|+.+...++++..-|.+.+||++.++
T Consensus       234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~  312 (498)
T KOG4328|consen  234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG  312 (498)
T ss_pred             CccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCC
Confidence            4469999999955 67888899999999999754333333331 234567788898886777777666899999999665


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCCCc-----eeee
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG-----TPIR  251 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~~~-----~~~~  251 (350)
                      ....                        .+.-|. ..|.+++++|-. .+|++++.| ++.+|||++.-..     ....
T Consensus       313 s~~~------------------------~~~lh~-kKI~sv~~NP~~p~~laT~s~D-~T~kIWD~R~l~~K~sp~lst~  366 (498)
T KOG4328|consen  313 SEYE------------------------NLRLHK-KKITSVALNPVCPWFLATASLD-QTAKIWDLRQLRGKASPFLSTL  366 (498)
T ss_pred             ccch------------------------hhhhhh-cccceeecCCCCchheeecccC-cceeeeehhhhcCCCCcceecc
Confidence            4322                        234454 599999999965 567888999 5999999986432     2345


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCC----CCceeccccCCC------CeEEEEEcCCCCEEEEEE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN----TWTSEPWSSTSG------FVTGATWDPEGRMILLAF  314 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~----~~~~~~~~~~~~------~v~~~~~s~~g~~l~~~~  314 (350)
                      .|...|.+..|||+|-.|++.+.|..|+|||..    .-.......|..      .....+|.|+..+++++.
T Consensus       367 ~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~  439 (498)
T KOG4328|consen  367 PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR  439 (498)
T ss_pred             cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec
Confidence            688899999999998789999999999999984    222222333322      234678999999999884

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.5e-16  Score=126.83  Aligned_cols=182  Identities=15%  Similarity=0.249  Sum_probs=125.3

Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC--ceee-cccccccceecCCC-----------CCceEEeee
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA--ASVR-SGAASFLGALSRGP-----------GTRWTLVDF  206 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~  206 (350)
                      .+|.+.|++++|+.||+.|++++.|+.|++|+++.-.+.  ..+. ...........+.+           .+++.+...
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence            589999999999999999999999999999998721110  0000 00000111111211           112221111


Q ss_pred             --------------------ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce-eeeecCCCeEEEEEcCC
Q 018806          207 --------------------LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPT  265 (350)
Q Consensus       207 --------------------~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~  265 (350)
                                          -+.| ...+..+-..-.+++|++++.|. +|.+|+++ |+.. .+......-+..+.||+
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA~~~k~imsas~dt-~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIAGNAKYIMSASLDT-KICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             eecccCCCCcccccccccccchhc-ccceEEEeecCCceEEEEecCCC-cEEEEecC-CceeeeeccccccccceeeCCC
Confidence                                1112 23555666677889999999996 99999999 5443 34444566777899999


Q ss_pred             CCEEEEEecCCeEEEEeCC---CCce------eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          266 GDYFFAAKFDGTFYLWETN---TWTS------EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       266 g~~l~~~~~d~~v~iwd~~---~~~~------~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      |++|++++.--.|++|..-   .|+.      .++.+|...|..++||++.+.+++.+ |+...+|+.++
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            9999999998999999863   3332      34679999999999999999999986 66666666554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.74  E-value=1.4e-16  Score=128.69  Aligned_cols=197  Identities=14%  Similarity=0.228  Sum_probs=143.9

Q ss_pred             CeeEEEEecCC----CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEecCC
Q 018806          101 DLQGVSWHQHK----HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       101 ~V~~v~~sp~g----~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~  175 (350)
                      ....++|+-+.    .++|.|+.-|.|+|.|+..  ++....+ .+|...|+.+++.|+.. .+++++.|..|++|+++.
T Consensus        91 sfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   91 SFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--GQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             ceEEEEEEecCCCCCeeEEeecceeEEEEEecch--hhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            46778887653    4888899999999999954  4444444 58999999999999854 566666689999999995


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC---------
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL---------  246 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~---------  246 (350)
                      ......                      ..-+.+|. ..|.++.|+++|.+|++++.|. ++++|++...+         
T Consensus       168 ~~Cv~V----------------------fGG~egHr-deVLSvD~~~~gd~i~ScGmDh-slk~W~l~~~~f~~~lE~s~  223 (385)
T KOG1034|consen  168 DVCVAV----------------------FGGVEGHR-DEVLSVDFSLDGDRIASCGMDH-SLKLWRLNVKEFKNKLELSI  223 (385)
T ss_pred             CeEEEE----------------------eccccccc-CcEEEEEEcCCCCeeeccCCcc-eEEEEecChhHHhhhhhhhc
Confidence            444322                      22257786 6999999999999999999995 99999997330         


Q ss_pred             ------------------------------------------------------c----------------eeeeec---
Q 018806          247 ------------------------------------------------------G----------------TPIRRG---  253 (350)
Q Consensus       247 ------------------------------------------------------~----------------~~~~~~---  253 (350)
                                                                            .                ..+..+   
T Consensus       224 ~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~  303 (385)
T KOG1034|consen  224 TYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY  303 (385)
T ss_pred             ccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc
Confidence                                                                  0                000000   


Q ss_pred             -CCCeE--EEEEcCCCCEEEEEecCCeEEEEeCCCCceec---cc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          254 -FGGLS--ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       254 -~~~v~--~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~---~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                       ...++  ..+|.|-+++||.|...|.|++||++..+...   +.  .....|...+||.||..|+..++. ..+|.|+.
T Consensus       304 ~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd-~~Vwrwdr  382 (385)
T KOG1034|consen  304 PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD-GTVWRWDR  382 (385)
T ss_pred             CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC-CcEEEEEe
Confidence             01122  23455667889999999999999998876522   21  335678999999999999877654 47888865

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=6.2e-17  Score=141.30  Aligned_cols=207  Identities=14%  Similarity=0.264  Sum_probs=151.1

Q ss_pred             CCCccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCc----eeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEE
Q 018806           96 LLPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKD----ACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGIC  169 (350)
Q Consensus        96 ~~~~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~  169 (350)
                      +..+..|+.+.|+| |.+.||+++.||.|+||.+..+....    ...+...|...|++++|+|-.. .|++++.|.+|+
T Consensus       624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence            44455899999999 67899999999999999987543222    1223347899999999999644 455566799999


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      +||+.....                         ...+.+|. ..|.+++|||+|+.+++.+.| |+|++|+-++++.. 
T Consensus       704 lWDl~~~~~-------------------------~~~l~gHt-dqIf~~AWSpdGr~~AtVcKD-g~~rVy~Prs~e~p-  755 (1012)
T KOG1445|consen  704 LWDLANAKL-------------------------YSRLVGHT-DQIFGIAWSPDGRRIATVCKD-GTLRVYEPRSREQP-  755 (1012)
T ss_pred             eeehhhhhh-------------------------hheeccCc-CceeEEEECCCCcceeeeecC-ceEEEeCCCCCCCc-
Confidence            999984332                         33477887 699999999999999999999 79999999887543 


Q ss_pred             eeecCCC----eEEEEEcCCCCEEEEEecC----CeEEEEeCCCCceeccc----cCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          250 IRRGFGG----LSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       250 ~~~~~~~----v~~~~~sp~g~~l~~~~~d----~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      +.+..++    --.+.|.-||+++++.+.|    +.|.+||.++-....+.    .-...+.-..+.+|...|+.++.++
T Consensus       756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD  835 (1012)
T KOG1445|consen  756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD  835 (1012)
T ss_pred             cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCC
Confidence            3333332    3467899999999877765    47889988765532221    1122233346788888888888777


Q ss_pred             eEEEEEEeCCCCC
Q 018806          318 LTLGSIHFASKPP  330 (350)
Q Consensus       318 ~~~~~~~~~~~~~  330 (350)
                      ..++...+-...+
T Consensus       836 ~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  836 RFVNMYEVIYESP  848 (1012)
T ss_pred             ceEEEEEecCCCc
Confidence            7777777654433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.73  E-value=4.2e-16  Score=125.61  Aligned_cols=201  Identities=17%  Similarity=0.281  Sum_probs=152.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +|+|.+|++|++.+|.+-+...+.||.....+--........|+..|+.++|+|..++|++++.|+.-++|....+    
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~----   87 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG----   87 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC----
Confidence            5999999999999999999999999998754412233333579999999999999999999999999999998522    


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee----e-eecCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----I-RRGFG  255 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~----~-~~~~~  255 (350)
                                        ++|...-.+..++ ..++++.|+|.+..+++++... .|.+|-++...-=.    + ..+..
T Consensus        88 ------------------~~WkptlvLlRiN-rAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWVsKhikkPirS  147 (361)
T KOG1523|consen   88 ------------------GTWKPTLVLLRIN-RAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWVSKHIKKPIRS  147 (361)
T ss_pred             ------------------CeeccceeEEEec-cceeeEeecCcCceEEeccCcc-EEEEEEEecccceehhhhhCCcccc
Confidence                              2444344444554 6899999999999999999885 99999877543221    1 12356


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCC-----CCc-------e-------eccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETN-----TWT-------S-------EPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~-----~~~-------~-------~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      .|.++.|+|++-+|++|+.|+..+||..-     ...       .       .++....+.+..+.|+|+|..|+..+..
T Consensus       148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd  227 (361)
T KOG1523|consen  148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD  227 (361)
T ss_pred             ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence            78999999999999999999999998542     111       0       1122456789999999999999987633


Q ss_pred             CeEEEEEEeC
Q 018806          317 SLTLGSIHFA  326 (350)
Q Consensus       317 ~~~~~~~~~~  326 (350)
                      . .+...+-.
T Consensus       228 s-~v~~~da~  236 (361)
T KOG1523|consen  228 S-TVSFVDAA  236 (361)
T ss_pred             C-ceEEeecC
Confidence            2 34444443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.73  E-value=3.7e-16  Score=132.74  Aligned_cols=180  Identities=18%  Similarity=0.318  Sum_probs=145.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      ..|+++.++-...+||+++..|.|.|..+.+  +.....+..+....|.-+.|+|..+.++...+ +|.|.+||+.....
T Consensus       122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t--~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp  199 (673)
T KOG4378|consen  122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKT--KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP  199 (673)
T ss_pred             ceeEEEEecCCcceeEEeccCCcEEEEeccc--CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc
Confidence            4699999999999999999999999999854  44445554455667889999999777776666 59999999983222


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                      .                        ......|. .+...++|+|. ...|++.+.|. .|.+||+.............+.
T Consensus       200 ~------------------------~~~~~~Hs-AP~~gicfspsne~l~vsVG~Dk-ki~~yD~~s~~s~~~l~y~~Pl  253 (673)
T KOG4378|consen  200 I------------------------FHASEAHS-APCRGICFSPSNEALLVSVGYDK-KINIYDIRSQASTDRLTYSHPL  253 (673)
T ss_pred             c------------------------cchhhhcc-CCcCcceecCCccceEEEecccc-eEEEeecccccccceeeecCCc
Confidence            1                        11134454 78899999995 55678889995 9999999987776666777899


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCC
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g  307 (350)
                      ..++|+++|.+|+.|...|.|..||++..+.  ..+..|...|++++|-|.-
T Consensus       254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  254 STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999999999999999999998765  4566888899999998864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=6e-17  Score=141.38  Aligned_cols=188  Identities=20%  Similarity=0.316  Sum_probs=141.4

Q ss_pred             EEecCCCEEEE--EECCCeEEEEEccCCCCCceeEecC--CCCCCeeEEEEeeC-CCeEEEEecCCcEEEEecCCCCCCc
Q 018806          106 SWHQHKHIVAF--ISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       106 ~~sp~g~~la~--~s~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|+.+..++|+  ++..|.|-||+++.. |+.......  .....|+.+.|.|- ..+|++++.||.|++|.+..++...
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~P-GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEP-GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE  664 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCC-CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence            45556667765  456789999999742 333222211  14567999999984 4567777778999999998766554


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCce-eeeecCCCeE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS  258 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~~-~~~~~~~~v~  258 (350)
                      ...+.                  ...+.+|. ..|+++.|+|- ...|++++.|. +|++||+++++.. .+.+|.+.|.
T Consensus       665 ~~~tP------------------e~~lt~h~-eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~~~~~~l~gHtdqIf  724 (1012)
T KOG1445|consen  665 NEMTP------------------EKILTIHG-EKITSLRFHPLAADVLAVASYDS-TIELWDLANAKLYSRLVGHTDQIF  724 (1012)
T ss_pred             ccCCc------------------ceeeeccc-ceEEEEEecchhhhHhhhhhccc-eeeeeehhhhhhhheeccCcCcee
Confidence            43332                  34577776 69999999995 56788999995 9999999998754 5778999999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc---CCCCeEEEEEcCCCCEEEEEE
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .++|||+|+.+|+.+.||+|++|+-++++.....+   -...-..+.|.-||+++++.+
T Consensus       725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence            99999999999999999999999998876522211   123446788999999988876

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.3e-16  Score=137.46  Aligned_cols=197  Identities=16%  Similarity=0.214  Sum_probs=151.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccC---CCC--CceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED---SEG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~---~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      .++.++|+|....|++++.|+++.+|++..   ...  ......+.+|.++|.|++..+++..++++|.||+|+.|++..
T Consensus       296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~  375 (577)
T KOG0642|consen  296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP  375 (577)
T ss_pred             hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence            588889999999999999999999999921   111  122223358999999999999999999999999999999872


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc--------
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--------  247 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~--------  247 (350)
                      ...+....               +.-.+...+.||. ..++.+++|+....|++++.| |+++.|+......        
T Consensus       376 n~dp~ds~---------------dp~vl~~~l~Ght-davw~l~~s~~~~~Llscs~D-gTvr~w~~~~~~~~~f~~~~e  438 (577)
T KOG0642|consen  376 NQDPDDSY---------------DPSVLSGTLLGHT-DAVWLLALSSTKDRLLSCSSD-GTVRLWEPTEESPCTFGEPKE  438 (577)
T ss_pred             CCCccccc---------------Ccchhccceeccc-cceeeeeecccccceeeecCC-ceEEeeccCCcCccccCCccc
Confidence            22211110               0112455688997 699999999999999999999 7999998754311        


Q ss_pred             ------------------------------------eeeeec--------CCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          248 ------------------------------------TPIRRG--------FGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       248 ------------------------------------~~~~~~--------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                                                          ..+...        ...+..+.++|.+.+.+++..|+.|+++|.
T Consensus       439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn  518 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN  518 (577)
T ss_pred             cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence                                                000000        013456778888889999999999999999


Q ss_pred             CCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          284 NTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       284 ~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .+++. .....|...++++++.|+|-+|+++.
T Consensus       519 ~~~~~l~s~~a~~~svtslai~~ng~~l~s~s  550 (577)
T KOG0642|consen  519 KTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS  550 (577)
T ss_pred             cccccchheeeccceecceeecCCCceEEeec
Confidence            99998 45668889999999999999999885

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4.6e-17  Score=150.83  Aligned_cols=204  Identities=19%  Similarity=0.270  Sum_probs=145.3

Q ss_pred             ccCeeEEEEecCCCE----EEEEECCCeEEEEEccCC--CC-CceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEE
Q 018806           99 EVDLQGVSWHQHKHI----VAFISGSTQVIVRDYEDS--EG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICI  170 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~----la~~s~d~~i~iw~~~~~--~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i  170 (350)
                      ....+.++|.+.|..    ||.|..||.|.+|+....  .. .........|.+.|..+.|++....++++|. +|.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456889999998865    888889999999998641  11 2222223469999999999999775555555 699999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCe-EEEEEeCCCeEEEEeCCCCCcee
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      ||+.....+....                        .....+.|.+++|+..-.+ |++++.+ |.+.|||++..+.+.
T Consensus       144 WDlnn~~tP~~~~------------------------~~~~~~eI~~lsWNrkvqhILAS~s~s-g~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  144 WDLNKPETPFTPG------------------------SQAPPSEIKCLSWNRKVSHILASGSPS-GRAVIWDLRKKKPII  198 (1049)
T ss_pred             eccCCcCCCCCCC------------------------CCCCcccceEeccchhhhHHhhccCCC-CCceeccccCCCccc
Confidence            9998543322211                        0001368999999986555 4555555 799999999875543


Q ss_pred             -eeecC--CCeEEEEEcCCCC-EEEEEecCC---eEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 018806          250 -IRRGF--GGLSILKWSPTGD-YFFAAKFDG---TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  320 (350)
Q Consensus       250 -~~~~~--~~v~~~~~sp~g~-~l~~~~~d~---~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  320 (350)
                       +..+.  ..+..++|+|+.. .|++++.|.   .|.+||++....  +.+..|...|.++.|++.+..++.++++++.+
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence             33332  3477899999854 466665543   799999986554  45679999999999999886666666666677


Q ss_pred             EEEEeCC
Q 018806          321 GSIHFAS  327 (350)
Q Consensus       321 ~~~~~~~  327 (350)
                      ..|....
T Consensus       279 i~wN~~t  285 (1049)
T KOG0307|consen  279 ICWNPNT  285 (1049)
T ss_pred             eEecCCC
Confidence            7776554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=7.8e-16  Score=119.60  Aligned_cols=217  Identities=12%  Similarity=0.101  Sum_probs=145.2

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccC-------CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYED-------SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      |.+-+|+|.+++|+.|+.+|.|.+..+..       ..++.......+|+++|+.++|..  . ++.++.||.|+-|...
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~gdG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGGDGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeeccCceEEEeeeh
Confidence            45567899999999999999999998753       223444444468999999999983  3 4455566999998876


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccC--CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-ee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IR  251 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~  251 (350)
                      ..........               .|.+......  -.--.|.++...|....+++++.| +.++-||+++|+... +.
T Consensus        90 E~~es~~~K~---------------lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   90 EEEESLATKR---------------LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-GVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             hhhhhccchh---------------hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-eEEEEEEecCCEEEEEEc
Confidence            3322111000               1111111111  001368899999988888888888 699999999998765 66


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc----------cC-CCCeEEEEEcCCCCEEEEEECCCeEE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------ST-SGFVTGATWDPEGRMILLAFAGSLTL  320 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~----------~~-~~~v~~~~~s~~g~~l~~~~~~~~~~  320 (350)
                      +|...+.++.--.....+++|++||++++||.++++.....          .| ..+|.  +..-+..+|++|++....+
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgGp~lsl  231 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGGPKLSL  231 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCCCceeE
Confidence            78899999887444456889999999999999999874432          11 22344  4445677998776666565


Q ss_pred             EEEEeCCCCC--CCceeeccc
Q 018806          321 GSIHFASKPP--SLDAHLLPV  339 (350)
Q Consensus       321 ~~~~~~~~~~--~~~~~~~~v  339 (350)
                      |.++-.....  .+.+|..-+
T Consensus       232 whLrsse~t~vfpipa~v~~v  252 (325)
T KOG0649|consen  232 WHLRSSESTCVFPIPARVHLV  252 (325)
T ss_pred             EeccCCCceEEEecccceeEe
Confidence            5554443322  344444433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=1.1e-15  Score=121.68  Aligned_cols=153  Identities=16%  Similarity=0.361  Sum_probs=109.0

Q ss_pred             eEEEEecCCCEEEEEEC----------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec--CCcEEE
Q 018806          103 QGVSWHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICI  170 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v~i  170 (350)
                      -.+.|+|+|++|+.-..          -+...||.++..+ .....+.....++|.+++|+|+|+.++++..  ++.+.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            35789999988876432          2346677775433 2333443345567999999999998876643  589999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC--CCeEEEEeCCCCCce
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGT  248 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~~~~~~~  248 (350)
                      ||++ ...                         ...+.   ...+..+.|+|+|++|++++.+  .|.|.+||+++.+..
T Consensus        88 yd~~-~~~-------------------------i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i  138 (194)
T PF08662_consen   88 YDVK-GKK-------------------------IFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI  138 (194)
T ss_pred             EcCc-ccE-------------------------eEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence            9996 111                         11121   2467889999999999998754  268999999977665


Q ss_pred             eeeecCCCeEEEEEcCCCCEEEEEec------CCeEEEEeCCCC
Q 018806          249 PIRRGFGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTW  286 (350)
Q Consensus       249 ~~~~~~~~v~~~~~sp~g~~l~~~~~------d~~v~iwd~~~~  286 (350)
                      ....+ ..+..++|+|||++|+++..      |+.++||+....
T Consensus       139 ~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  139 STFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             ecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            54444 35789999999999988754      778999998644

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.72  E-value=7.6e-17  Score=131.82  Aligned_cols=144  Identities=13%  Similarity=0.230  Sum_probs=113.3

Q ss_pred             CCeeEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC
Q 018806          145 RDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  223 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  223 (350)
                      ..|.++.|+|....+++++ +|+.|.+||++.......+...                           -.-..++|+|.
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---------------------------mRTN~IswnPe  240 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---------------------------MRTNTICWNPE  240 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee---------------------------ccccceecCcc
Confidence            4578888888866666655 6899999999965544433221                           35578999998


Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCc--eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc--ccCCCCeE
Q 018806          224 GRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVT  299 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~  299 (350)
                      +-.+++++.|. .++.||++.-..  .....|...|.++.|||.|+.+++|+.|.+|+||..+.+.....  ..-...|.
T Consensus       241 afnF~~a~ED~-nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~  319 (433)
T KOG0268|consen  241 AFNFVAANEDH-NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF  319 (433)
T ss_pred             ccceeeccccc-cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence            88888899995 999999987543  23456778999999999999999999999999999998876432  23345799


Q ss_pred             EEEEcCCCCEEEEEECC
Q 018806          300 GATWDPEGRMILLAFAG  316 (350)
Q Consensus       300 ~~~~s~~g~~l~~~~~~  316 (350)
                      ++.||.|.+++++|++.
T Consensus       320 ~Vk~S~Dskyi~SGSdd  336 (433)
T KOG0268|consen  320 CVKYSMDSKYIISGSDD  336 (433)
T ss_pred             EEEEeccccEEEecCCC
Confidence            99999999999988633

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.70  E-value=4e-15  Score=126.80  Aligned_cols=194  Identities=11%  Similarity=0.201  Sum_probs=146.5

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCc-------------------------------------eeEe
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD-------------------------------------ACIL  139 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~-------------------------------------~~~~  139 (350)
                      .+...|.++..-.+|.+| +|+.|+.|..||-+..+...                                     ....
T Consensus       285 aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             ecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            334468888888898866 49999999999843111000                                     0011


Q ss_pred             cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEE
Q 018806          140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  219 (350)
Q Consensus       140 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (350)
                      ..+|....+.++.+|+..++++++.|+.+++|+ . . ++.                       |..+.   ..++.++.
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~-k~~-----------------------wt~~~---~d~~~~~~  414 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-H-KLE-----------------------WTKII---EDPAECAD  414 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEcc-C-C-cee-----------------------EEEEe---cCceeEee
Confidence            236777888999999988999999999999999 2 1 110                       11111   25789999


Q ss_pred             ECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee--c-cccCCC
Q 018806          220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--P-WSSTSG  296 (350)
Q Consensus       220 ~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~--~-~~~~~~  296 (350)
                      |+|.| .++.++.. |...+.|..+.....+.....++.+++|+|+|.+||.|+.|+.|+||.+......  . -.-+..
T Consensus       415 fhpsg-~va~Gt~~-G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs  492 (626)
T KOG2106|consen  415 FHPSG-VVAVGTAT-GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS  492 (626)
T ss_pred             ccCcc-eEEEeecc-ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc
Confidence            99999 99999888 7999999999777777766889999999999999999999999999998765542  1 123348


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          297 FVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +|+.+.||+|+++|.+-    ...+.+-+|
T Consensus       493 ~ithLDwS~Ds~~~~~~----S~d~eiLyW  518 (626)
T KOG2106|consen  493 PITHLDWSSDSQFLVSN----SGDYEILYW  518 (626)
T ss_pred             eeEEeeecCCCceEEec----cCceEEEEE
Confidence            99999999999999866    344566666

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.70  E-value=1.2e-15  Score=121.28  Aligned_cols=199  Identities=18%  Similarity=0.326  Sum_probs=135.5

Q ss_pred             CeeEEEEecC-CCEEEEEECC-------CeEEEEEccCCCCC-------ceeEecCCCCCCeeEEEEeeCCCeEEEEecC
Q 018806          101 DLQGVSWHQH-KHIVAFISGS-------TQVIVRDYEDSEGK-------DACILTSDSQRDVKVLEWRPNGGRSLSVGCK  165 (350)
Q Consensus       101 ~V~~v~~sp~-g~~la~~s~d-------~~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  165 (350)
                      +|+.++-+|- .+.|+++..+       ..+.||.+..+-+.       .+..+...+-+.|.++.|.|++.++++. .|
T Consensus        65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~d  143 (370)
T KOG1007|consen   65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DD  143 (370)
T ss_pred             ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-cc
Confidence            4666666664 3555555431       24669998643222       2223322455689999999997666554 48


Q ss_pred             CcEEEEecCCCCC-CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC--CCCeEEEEEeCCCeEEEEeC
Q 018806          166 GGICIWAPSYPGN-AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       166 ~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~d~g~i~iwd~  242 (350)
                      ..|.+|++..... ...+....                    -.++. ...++-+|+|  +|..+++.+ + +++..||+
T Consensus       144 n~i~l~~l~ess~~vaev~ss~--------------------s~e~~-~~ftsg~WspHHdgnqv~tt~-d-~tl~~~D~  200 (370)
T KOG1007|consen  144 NNIVLWSLDESSKIVAEVLSSE--------------------SAEMR-HSFTSGAWSPHHDGNQVATTS-D-STLQFWDL  200 (370)
T ss_pred             CceEEEEcccCcchheeecccc--------------------ccccc-ceecccccCCCCccceEEEeC-C-CcEEEEEc
Confidence            9999999986554 22222110                    01112 3567789998  678887765 4 49999999


Q ss_pred             CCCCceeee--ecCCCeEEEEEcCCCCE-EEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          243 AQGLGTPIR--RGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       243 ~~~~~~~~~--~~~~~v~~~~~sp~g~~-l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ++..+....  .|...+..+.|+|+.++ |++++.||.|+|||.+..+.  ..+.+|..+|+++.|+|.-..|+.+++.+
T Consensus       201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence            987665432  35567999999999775 68999999999999998765  56789999999999999876666655444


Q ss_pred             eEEEEE
Q 018806          318 LTLGSI  323 (350)
Q Consensus       318 ~~~~~~  323 (350)
                      ..+..+
T Consensus       281 s~V~Ls  286 (370)
T KOG1007|consen  281 SAVNLS  286 (370)
T ss_pred             ceeEEE
Confidence            444333

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=1.6e-15  Score=133.39  Aligned_cols=218  Identities=16%  Similarity=0.303  Sum_probs=141.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC--
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN--  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--  178 (350)
                      .|+.++|-|||..|+.+..+ .+.+||.+.  |.....+ ++|...|.+++|+.||+++++++.|+.|.+|+-...+.  
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd--G~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD--GTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCC--ccccccc-ccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence            58999999999988876554 588999854  6655555 69999999999999999999999999999998774432  


Q ss_pred             ---Cceeecccccccce-ecCCCCCceEEeee-----ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          179 ---AASVRSGAASFLGA-LSRGPGTRWTLVDF-----LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       179 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                         ...+....+.+... +..+.-..+.+|..     .+.....++.+.+|..||++++.|-.+ |+|.+-+-...+...
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~n-GTIsiRNk~gEek~~  168 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFN-GTISIRNKNGEEKVK  168 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccC-ceEEeecCCCCcceE
Confidence               22333334444332 22222222222221     111123578899999999999999988 799887654333333


Q ss_pred             eee---cCCCeEEEEEcC----------------------------------------------CCCEEEEEecCCeEEE
Q 018806          250 IRR---GFGGLSILKWSP----------------------------------------------TGDYFFAAKFDGTFYL  280 (350)
Q Consensus       250 ~~~---~~~~v~~~~~sp----------------------------------------------~g~~l~~~~~d~~v~i  280 (350)
                      +..   .+.+|.+++|+|                                              +|.++..|+.|+.+++
T Consensus       169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~  248 (1081)
T KOG1538|consen  169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSL  248 (1081)
T ss_pred             EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEE
Confidence            322   234555555555                                              4444444444444444


Q ss_pred             EeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          281 WETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       281 wd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      |--+.-..-++-....+|+.++..|++++++.|| ++.+.-+.+
T Consensus       249 fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  249 FTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            4322211222334567899999999999999998 665444433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=1.9e-14  Score=125.57  Aligned_cols=204  Identities=12%  Similarity=0.132  Sum_probs=133.5

Q ss_pred             CeeEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCc--eeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      ....++|+|++++|++++. ++.+.+|+++.. +..  .... ..+......++++|+++.++++.. ++.|.+||+...
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKD-GIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCC-CCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            4578999999999988764 889999999632 211  1111 123345678899999888877766 599999999743


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--CCceeee---
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIR---  251 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--~~~~~~~---  251 (350)
                      +........                    ............++|+|+|++++++...+++|.+|+++.  ++...+.   
T Consensus       159 g~l~~~~~~--------------------~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        159 GHLVAQEPA--------------------EVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             CcccccCCC--------------------ceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            322110000                    000001235678999999999998887446999999974  3322111   


Q ss_pred             ec------CCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCCCc-eeccc---cCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 018806          252 RG------FGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT-SEPWS---STSGFVTGATWDPEGRMILLAFAGSLTL  320 (350)
Q Consensus       252 ~~------~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~~~-~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~  320 (350)
                      ..      ......+.|+|+|++++++.. ++.|.+|+++... ...+.   ........++|+|||++|+++..++..+
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence            11      122346889999999988754 7899999986533 22222   1223456899999999999988545555


Q ss_pred             EEEEeC
Q 018806          321 GSIHFA  326 (350)
Q Consensus       321 ~~~~~~  326 (350)
                      ..+++.
T Consensus       299 ~v~~~~  304 (330)
T PRK11028        299 SVYEID  304 (330)
T ss_pred             EEEEEc
Confidence            555543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=3.4e-14  Score=124.01  Aligned_cols=201  Identities=10%  Similarity=0.133  Sum_probs=133.3

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      ....++++|++++|++++ .++.|.+|+++ .++...........+....++|+|+++.++++.. ++.|.+|++...+.
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~  114 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI  114 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence            466789999999987765 47889999996 3333211111123345678999999888887776 69999999974332


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC-cee-----ee-
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTP-----IR-  251 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~-~~~-----~~-  251 (350)
                      ....                     ...+.+.  .....++++|+|+++++++...+.|.+||+++.. ...     .. 
T Consensus       115 ~~~~---------------------~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~  171 (330)
T PRK11028        115 PVAP---------------------IQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT  171 (330)
T ss_pred             CCCc---------------------eeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence            2110                     1111221  3467789999999998777665799999998632 211     11 


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCC--Ccee---cccc------CCCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTSE---PWSS------TSGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~--~~~~---~~~~------~~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                      ........++|+|+|++++++.. +++|.+|+++.  ++..   .+..      +......+.|+|+|++|+++......
T Consensus       172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~  251 (330)
T PRK11028        172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL  251 (330)
T ss_pred             CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe
Confidence            12345678999999999988776 89999999973  3331   1111      11223468899999999998654445


Q ss_pred             EEEEEe
Q 018806          320 LGSIHF  325 (350)
Q Consensus       320 ~~~~~~  325 (350)
                      +..|++
T Consensus       252 I~v~~i  257 (330)
T PRK11028        252 ISVFSV  257 (330)
T ss_pred             EEEEEE
Confidence            555554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.3e-14  Score=127.69  Aligned_cols=193  Identities=16%  Similarity=0.137  Sum_probs=145.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|.+++|++ +..|.+.+.+|.|.-||+.+  .+....+ ....+.|++++.+|.+..++.++.||.+..++...+    
T Consensus        71 sIE~L~W~e-~~RLFS~g~sg~i~EwDl~~--lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~----  142 (691)
T KOG2048|consen   71 SIESLAWAE-GGRLFSSGLSGSITEWDLHT--LKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD----  142 (691)
T ss_pred             ceeeEEEcc-CCeEEeecCCceEEEEeccc--CceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCc----
Confidence            589999994 55677889999999999954  6655555 357789999999999666666666796666665521    


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-----ec--
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-----RG--  253 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-----~~--  253 (350)
                                         .+.....+... .+++.+++|+|++..|+.|+.| |.|++||..++....+.     .-  
T Consensus       143 -------------------~I~~~r~l~rq-~sRvLslsw~~~~~~i~~Gs~D-g~Iriwd~~~~~t~~~~~~~~d~l~k  201 (691)
T KOG2048|consen  143 -------------------KITYKRSLMRQ-KSRVLSLSWNPTGTKIAGGSID-GVIRIWDVKSGQTLHIITMQLDRLSK  201 (691)
T ss_pred             -------------------eEEEEeecccc-cceEEEEEecCCccEEEecccC-ceEEEEEcCCCceEEEeeeccccccc
Confidence                               11122233333 3799999999999999999999 79999999998765422     11  


Q ss_pred             --CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          254 --FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       254 --~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                        ..-|+++.|-.++ .|++|...|+|.+||...++.. .+..|..-|.+++-++++.++++++ ++.  +..+..
T Consensus       202 ~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~--ii~~~~  274 (691)
T KOG2048|consen  202 REPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK--IIQYSL  274 (691)
T ss_pred             CCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc--eEEEEe
Confidence              1236777777665 6889999999999999999984 5668899999999999999998876 443  444444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.69  E-value=1.7e-14  Score=129.83  Aligned_cols=217  Identities=15%  Similarity=0.210  Sum_probs=155.8

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCC-CCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~  178 (350)
                      .|+++.=+|--..+|.|..+|+|.|+++..  ++.+..+  .| .+.|++++|.-||..+++++.. |.+.+||++....
T Consensus       204 ~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--dkil~sF--k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl  279 (910)
T KOG1539|consen  204 RITAIEQSPALDVVAIGLENGTVIIFNLKF--DKILMSF--KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL  279 (910)
T ss_pred             ceeEeccCCcceEEEEeccCceEEEEEccc--CcEEEEE--EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence            689999999889999999999999999953  5555555  35 4899999999999988888885 9999999985444


Q ss_pred             Cceeecccccccce----------ecCCCC-----------------------------------------------Cce
Q 018806          179 AASVRSGAASFLGA----------LSRGPG-----------------------------------------------TRW  201 (350)
Q Consensus       179 ~~~~~~~~~~~~~~----------~~~~~~-----------------------------------------------~~~  201 (350)
                      ...+...+...+..          +..+.|                                               ..+
T Consensus       280 ~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~  359 (910)
T KOG1539|consen  280 INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL  359 (910)
T ss_pred             eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence            33333222111110          000000                                               000


Q ss_pred             E-----------------------------------------------------------------Eee---------ec
Q 018806          202 T-----------------------------------------------------------------LVD---------FL  207 (350)
Q Consensus       202 ~-----------------------------------------------------------------~~~---------~~  207 (350)
                      +                                                                 .|+         .+
T Consensus       360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L  439 (910)
T KOG1539|consen  360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL  439 (910)
T ss_pred             hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence            0                                                                 000         01


Q ss_pred             cCC----CCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee----ecCCCeEEEEEcCCCCEEEEEecCCeEE
Q 018806          208 RSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFY  279 (350)
Q Consensus       208 ~~~----~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~d~~v~  279 (350)
                      ...    -+..+++++.++-|++.+.|... |+|-+|++++|-....+    .|.++|..++..--++.+++++.+|.++
T Consensus       440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  440 DPKRFKKDDINATAVCVSFCGNFVFIGYSK-GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK  518 (910)
T ss_pred             cCccccccCcceEEEEEeccCceEEEeccC-CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence            100    12467788889999988888877 79999999999766544    5789999999998899999999999999


Q ss_pred             EEeCCCCce------------------------------------------eccccCCCCeEEEEEcCCCCEEEEEE-CC
Q 018806          280 LWETNTWTS------------------------------------------EPWSSTSGFVTGATWDPEGRMILLAF-AG  316 (350)
Q Consensus       280 iwd~~~~~~------------------------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~-~~  316 (350)
                      +||......                                          +.+.+|.+.|++++|||||++|++++ |+
T Consensus       519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~  598 (910)
T KOG1539|consen  519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS  598 (910)
T ss_pred             EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence            999876441                                          11236899999999999999999987 44


Q ss_pred             CeEEEE
Q 018806          317 SLTLGS  322 (350)
Q Consensus       317 ~~~~~~  322 (350)
                      .+++|+
T Consensus       599 tIr~wD  604 (910)
T KOG1539|consen  599 TIRTWD  604 (910)
T ss_pred             cEEEEe
Confidence            444333

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.69  E-value=4.6e-15  Score=119.88  Aligned_cols=202  Identities=15%  Similarity=0.185  Sum_probs=144.1

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCC----------ceeEecCCCCCCeeEEEEe-------eCCCeEEEEec
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK----------DACILTSDSQRDVKVLEWR-------PNGGRSLSVGC  164 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~----------~~~~~~~~~~~~v~~~~~s-------p~~~~l~~~~~  164 (350)
                      ...+.|||||..|++-+.|..+++|++......          ....+.......|...+|-       |+...+++++.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            567899999999999999999999998531110          1111212345678888885       66555666666


Q ss_pred             CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC-C
Q 018806          165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV-A  243 (350)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~-~  243 (350)
                      +.-|++||.-+++.......                   .+....-  ....+++|+|||.+|+++-..  +|++||+ +
T Consensus       132 ~~PIh~wdaftG~lraSy~~-------------------ydh~de~--taAhsL~Fs~DGeqlfaGykr--cirvFdt~R  188 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRA-------------------YDHQDEY--TAAHSLQFSPDGEQLFAGYKR--CIRVFDTSR  188 (406)
T ss_pred             cCceeeeeccccccccchhh-------------------hhhHHhh--hhheeEEecCCCCeEeecccc--eEEEeeccC
Confidence            89999999985554332211                   1111111  245689999999999987554  8999999 5


Q ss_pred             CCCcee---eeec-----CCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEE
Q 018806          244 QGLGTP---IRRG-----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       244 ~~~~~~---~~~~-----~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      .|....   ...+     .+-+.+++|+|- .+.+++++....+-||+-..+... .+.+|.+.|+.+.|.++|+.|++|
T Consensus       189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence            554221   1112     456889999995 558899999999999988877764 455899999999999999999999


Q ss_pred             ECCCeEEEEEEeC
Q 018806          314 FAGSLTLGSIHFA  326 (350)
Q Consensus       314 ~~~~~~~~~~~~~  326 (350)
                      ..++-.|-.|++.
T Consensus       269 aRk~dkIl~WDiR  281 (406)
T KOG2919|consen  269 ARKDDKILCWDIR  281 (406)
T ss_pred             ccCCCeEEEEeeh
Confidence            8666666666664

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=7.6e-15  Score=117.81  Aligned_cols=189  Identities=17%  Similarity=0.304  Sum_probs=143.7

Q ss_pred             ecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeE
Q 018806          139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  218 (350)
Q Consensus       139 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (350)
                      +..+|..-|.++.|.+.|+++++++.|.+|+|||....                     .+.|.+....+.|. +.|..+
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------------s~~W~~Ts~Wrah~-~Si~rV   65 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------------SGTWSCTSSWRAHD-GSIWRV   65 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCC---------------------CCceEEeeeEEecC-CcEEEE
Confidence            33478899999999999999999999999999997622                     34677777788886 899999


Q ss_pred             EECC--CCCeEEEEEeCCCeEEEEeCCCC-------C---ceeeeecCCCeEEEEEcCC--CCEEEEEecCCeEEEEeCC
Q 018806          219 SWGP--DGRYLASASYESSSFTIWDVAQG-------L---GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETN  284 (350)
Q Consensus       219 ~~sp--~g~~l~~~~~d~g~i~iwd~~~~-------~---~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~~v~iwd~~  284 (350)
                      .|.+  -|+.+|+++.| +++.||.-...       +   +..+......|+.++|.|.  |-.+|+++.||.++||+..
T Consensus        66 ~WAhPEfGqvvA~cS~D-rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~  144 (361)
T KOG2445|consen   66 VWAHPEFGQVVATCSYD-RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP  144 (361)
T ss_pred             EecCccccceEEEEecC-CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence            9965  49999999999 59999975311       1   1223345678999999995  7788999999999999875


Q ss_pred             CCce-ec------cc-------cCCCCeEEEEEcCC---CCEEEEEECC------CeEEEEEEeCC----CCCCCceeec
Q 018806          285 TWTS-EP------WS-------STSGFVTGATWDPE---GRMILLAFAG------SLTLGSIHFAS----KPPSLDAHLL  337 (350)
Q Consensus       285 ~~~~-~~------~~-------~~~~~v~~~~~s~~---g~~l~~~~~~------~~~~~~~~~~~----~~~~~~~~~~  337 (350)
                      ..-. .+      +.       .+..+..++.|+|.   ..+|++|++.      ...||...-..    +..++..|..
T Consensus       145 dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d  224 (361)
T KOG2445|consen  145 DPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD  224 (361)
T ss_pred             CccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC
Confidence            4221 11      11       35667889999984   4779999866      45555544333    3347889999


Q ss_pred             ccccceeecccCC
Q 018806          338 PVDLPDIVSLTGR  350 (350)
Q Consensus       338 ~v~~~~~~~~~g~  350 (350)
                      ||+...+.+.-||
T Consensus       225 pI~di~wAPn~Gr  237 (361)
T KOG2445|consen  225 PIRDISWAPNIGR  237 (361)
T ss_pred             cceeeeeccccCC
Confidence            9999999888776

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=5.4e-15  Score=117.81  Aligned_cols=197  Identities=16%  Similarity=0.291  Sum_probs=147.1

Q ss_pred             CeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ++++..|+. +-++|.+.|-|.+..|||++......+.+....|+..|..++|...+. .++++|.||.|++||++...+
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            688999986 568999999999999999976412122333358999999999998654 455677799999999996555


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCc--eeeeecCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG--TPIRRGFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~~~~  255 (350)
                      ...+....                     ..  ..+...++|++. -+++|+-..|+..|.|.|++....  ..+..|.+
T Consensus       232 STIIYE~p---------------------~~--~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a  288 (364)
T KOG0290|consen  232 STIIYEDP---------------------SP--STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA  288 (364)
T ss_pred             ceEEecCC---------------------CC--CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc
Confidence            44433221                     10  247788999874 567787777767999999997643  45778999


Q ss_pred             CeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCcee------ccccCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 018806          256 GLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE------PWSSTSGFVTGATWDP-EGRMILLAFAGSLTL  320 (350)
Q Consensus       256 ~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~------~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~  320 (350)
                      .|..++|.|. ...|++++.|..+-+||+...-..      -....++.|..+.|++ .+.+++.+.++...+
T Consensus       289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence            9999999996 567999999999999999764331      1123577899999995 678888887665443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.3e-14  Score=127.83  Aligned_cols=216  Identities=16%  Similarity=0.189  Sum_probs=142.7

Q ss_pred             ccCeeEEEEecCCCEEEEEECC---CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CC--cEEEEe
Q 018806           99 EVDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KG--GICIWA  172 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd  172 (350)
                      +..+...+|||||++|++.+.+   ..|.+|++..  +.. ..+. ...+.+...+|+|||+++++... ++  .|++||
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~--g~~-~~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT--GRR-EQIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC--CCE-EEcc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            3468899999999999987644   3577888854  332 2222 23345667999999988876554 44  577778


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceee
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPI  250 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~  250 (350)
                      +..+. ...                         +..+. .......|+|||+.|+..+..+|  .|+++|+.+++...+
T Consensus       274 ~~~~~-~~~-------------------------lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l  326 (430)
T PRK00178        274 LASRQ-LSR-------------------------VTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV  326 (430)
T ss_pred             CCCCC-eEE-------------------------cccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            76322 111                         22222 34567899999999988775433  688888888876554


Q ss_pred             eecCCCeEEEEEcCCCCEEEEEecC-C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEEEe
Q 018806          251 RRGFGGLSILKWSPTGDYFFAAKFD-G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF--AGSLTLGSIHF  325 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~g~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~  325 (350)
                      ...........|+|||++|+..+.+ +  .|++||+.+++...+... .......|+|||++|+++.  ++...++.++.
T Consensus       327 t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        327 TFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             ecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            4333344567899999999876643 3  588999998877555432 2334678999999999887  33456888887


Q ss_pred             CCCCC-CCceeecccccceeec
Q 018806          326 ASKPP-SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       326 ~~~~~-~~~~~~~~v~~~~~~~  346 (350)
                      ..... .+..+...+..|.+.+
T Consensus       406 ~g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        406 NGRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CCCceEECcCCCCCcCCCccCC
Confidence            65543 3433334455555554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.68  E-value=3.4e-15  Score=120.62  Aligned_cols=189  Identities=15%  Similarity=0.259  Sum_probs=135.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-----CCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~  174 (350)
                      ...+++|+|||.+|.+ +....|+++|.......+....+.     +..+-|.+++|+|-....+++++ ...+-||.-.
T Consensus       160 aAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~  238 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD  238 (406)
T ss_pred             hheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence            4689999999999975 567789999985332222222211     23678899999998775666655 5777777655


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--eeee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~~~~  252 (350)
                      . +.+                        ...+-+|. +.|+.+.|.++|+.|++++..+-.|..||++.-...  .+..
T Consensus       239 ~-~~p------------------------l~llggh~-gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r  292 (406)
T KOG2919|consen  239 G-RRP------------------------LQLLGGHG-GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER  292 (406)
T ss_pred             C-CCc------------------------eeeecccC-CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence            2 222                        33345665 799999999999999999875559999999865432  2333


Q ss_pred             cCC-CeEE--EEEcCCCCEEEEEecCCeEEEEeCCC-Cc-eeccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          253 GFG-GLSI--LKWSPTGDYFFAAKFDGTFYLWETNT-WT-SEPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       253 ~~~-~v~~--~~~sp~g~~l~~~~~d~~v~iwd~~~-~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      |.+ .-..  ....|+|++|++|+.||.|++||+++ +. ...+..+...+..++++|-=.+++++++.
T Consensus       293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            333 2223  44568999999999999999999998 55 34566788889999999987777766543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.7e-14  Score=128.97  Aligned_cols=175  Identities=17%  Similarity=0.245  Sum_probs=125.5

Q ss_pred             eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec---CCcEEEEecCCCCCCceeecccccccceecCCCC
Q 018806          122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPG  198 (350)
Q Consensus       122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (350)
                      .|.++|.+   +.....+. .+...+.+++|+|||+.+++++.   +..|++||+..+.. ..                 
T Consensus       183 ~l~~~d~d---g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~-----------------  240 (435)
T PRK05137        183 RLAIMDQD---GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-EL-----------------  240 (435)
T ss_pred             EEEEECCC---CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EE-----------------
Confidence            56677764   44444443 56778999999999998888765   36799999873321 11                 


Q ss_pred             CceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec-C
Q 018806          199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D  275 (350)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d  275 (350)
                              +..+ .+.+...+|+|||+.|+.....+|  .|++||+.++....+..+.......+|+|||+.|+..+. +
T Consensus       241 --------l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~  311 (435)
T PRK05137        241 --------VGNF-PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS  311 (435)
T ss_pred             --------eecC-CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence                    1222 246678899999998876543223  588889998877766666666778999999999987764 3


Q ss_pred             C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCC
Q 018806          276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFAS  327 (350)
Q Consensus       276 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~  327 (350)
                      +  .|+++|+.+++...+......+..+.|+|||++|++...  +...++.++...
T Consensus       312 g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        312 GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            3  689999988877766655566778899999999998763  235677777643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.3e-14  Score=127.38  Aligned_cols=217  Identities=12%  Similarity=0.142  Sum_probs=134.3

Q ss_pred             CeeEEEEecCCCEE--EEEE-CCC--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-C--cEE--E
Q 018806          101 DLQGVSWHQHKHIV--AFIS-GST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GIC--I  170 (350)
Q Consensus       101 ~V~~v~~sp~g~~l--a~~s-~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~--i  170 (350)
                      ...+-.|||||+.+  +..+ .++  .|.+.+++.  +.... +. ...+.....+|+|||++|++.+.. +  .++  +
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~--g~~~~-lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN--PAGKK-IL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCC--CCceE-ee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            45678999999753  2233 344  455556643  43322 22 234456678999999998887652 3  333  3


Q ss_pred             EecCCC--CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCe--EEEEeCCC--
Q 018806          171 WAPSYP--GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS--FTIWDVAQ--  244 (350)
Q Consensus       171 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~--i~iwd~~~--  244 (350)
                      |++...  +....+                        .... .......+|+|||+.|++.+..+|.  |+++++..  
T Consensus       262 ~~~~~g~~g~~~~l------------------------t~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        262 FSLETGAIGKPRRL------------------------LNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             eecccCCCCcceEe------------------------ecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence            555421  111111                        1111 1234678999999999887754354  44445542  


Q ss_pred             CCceeeeecCCCeEEEEEcCCCCEEEEEecC---CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE--CCCeE
Q 018806          245 GLGTPIRRGFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF--AGSLT  319 (350)
Q Consensus       245 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~~  319 (350)
                      +....+......+....|+|||++|+..+.+   ..|++||+.+++...+......+..+.|+|||++|++..  .+...
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~  396 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE  396 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence            2233344444567789999999999876543   379999999998877665555678899999999998765  34467


Q ss_pred             EEEEEeCCCCC-CCceeecccccceeec
Q 018806          320 LGSIHFASKPP-SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       320 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~  346 (350)
                      ++.+++..... .+......+..|.+.+
T Consensus       397 L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        397 LYLISLITKKTRKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             EEEEECCCCCEEEeecCCCcccCceecC
Confidence            88888765543 2322333345555544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=4e-14  Score=127.74  Aligned_cols=214  Identities=17%  Similarity=0.173  Sum_probs=136.0

Q ss_pred             CeeEEEEecCCCEEEEEECC-C--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCc--EEEEecC
Q 018806          101 DLQGVSWHQHKHIVAFISGS-T--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGG--ICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~--v~iwd~~  174 (350)
                      .+.+..|||||++|+..+.+ +  .|.+||+..  ++. ..+. ...+.....+|+|||+.++++.. ++.  |+++|+.
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t--g~~-~~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT--QVR-EKVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCC--CCe-EEec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            57789999999999987643 3  466777643  432 2222 22334567899999998887654 454  6666665


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~  252 (350)
                      .+ ...                         .+..+. ......+|+|||+.|+..+..+|  .|+++|+.+++...+..
T Consensus       295 tg-~~~-------------------------~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~  347 (448)
T PRK04792        295 TK-ALT-------------------------RITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF  347 (448)
T ss_pred             CC-CeE-------------------------ECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence            22 111                         122222 35567899999999988765433  57777888777655543


Q ss_pred             cCCCeEEEEEcCCCCEEEEEec-CC--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCC
Q 018806          253 GFGGLSILKWSPTGDYFFAAKF-DG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFAS  327 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~  327 (350)
                      ........+|+|||++|+..+. ++  .|.++|+.+++...+... .......|+|||++|+++..  +...++.++...
T Consensus       348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            3333456799999999977654 33  567788888876554432 22345689999999988763  334577777655


Q ss_pred             CCC-CCceeecccccceeec
Q 018806          328 KPP-SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       328 ~~~-~~~~~~~~v~~~~~~~  346 (350)
                      ... .+..+...+..|.+.+
T Consensus       427 ~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        427 RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CceEECcCCCCCcCCCccCC
Confidence            432 3433344455555554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.66  E-value=3.3e-15  Score=128.27  Aligned_cols=189  Identities=20%  Similarity=0.316  Sum_probs=128.3

Q ss_pred             cCCCEEEEEECCCeEEEEEccCCCCCceeEecC----CCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCce--
Q 018806          109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTS----DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS--  181 (350)
Q Consensus       109 p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~--  181 (350)
                      |.+--|..|-.-|.+.+.|.-.   .....++.    -.+..|++++|-|.+..++.++. +|.+++||.........  
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~---~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~  259 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPIN---FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS  259 (636)
T ss_pred             CCCcceEEeeccCceEEecchh---hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence            4565667777788888887642   11111111    13468999999998776666665 79999998752211110  


Q ss_pred             ---eeccc-ccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCC
Q 018806          182 ---VRSGA-ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGG  256 (350)
Q Consensus       182 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~  256 (350)
                         +..+. +................|..   . .+.|..++|+|||++||+.+.| |.++|||..+.+..-+. ..-++
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~---~-~g~in~f~FS~DG~~LA~VSqD-GfLRvF~fdt~eLlg~mkSYFGG  334 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHI---G-EGSINEFAFSPDGKYLATVSQD-GFLRIFDFDTQELLGVMKSYFGG  334 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEe---c-cccccceeEcCCCceEEEEecC-ceEEEeeccHHHHHHHHHhhccc
Confidence               00000 00000000000111111111   1 2578999999999999999999 79999999988765543 34588


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcC
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP  305 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~  305 (350)
                      ..|++|||||++|++|++|.-|.||.+..+++. +-.+|..+|+.++|.|
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999999999999999999999999998874 4578999999999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.4e-14  Score=125.53  Aligned_cols=176  Identities=18%  Similarity=0.295  Sum_probs=122.6

Q ss_pred             eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec---CCcEEEEecCCCCCCceeecccccccceecCCCC
Q 018806          122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPG  198 (350)
Q Consensus       122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (350)
                      .|.+||.+   +.....+. .+...+.+.+|+|||+.+++.+.   +..+++|++..+. ...+..              
T Consensus       180 ~l~~~d~d---g~~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~--------------  240 (429)
T PRK03629        180 ELRVSDYD---GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVAS--------------  240 (429)
T ss_pred             eEEEEcCC---CCCCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccC--------------
Confidence            57777775   33333443 35668999999999999887654   2568888886322 111111              


Q ss_pred             CceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC-
Q 018806          199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-  275 (350)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-  275 (350)
                              +.    +.+..++|+|||+.|+......|  .|++||+++++...+..+...+....|+|||+.|+..+.+ 
T Consensus       241 --------~~----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~  308 (429)
T PRK03629        241 --------FP----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA  308 (429)
T ss_pred             --------CC----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence                    11    23457899999999987644224  5999999988777766666677889999999999877654 


Q ss_pred             C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCCC
Q 018806          276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASK  328 (350)
Q Consensus       276 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~~  328 (350)
                      +  .|+++|+.+++..++...........|+|||++|++...  +...++.+++...
T Consensus       309 g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        309 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            3  566668888777666555555677899999999988763  3345666766543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.4e-14  Score=116.53  Aligned_cols=189  Identities=14%  Similarity=0.210  Sum_probs=139.5

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCCCCCceeecccccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      ..+|++-..|.|++||..+  ++....+ .++...++.++|..+  ...+++++.||+|++||++.......+..     
T Consensus        41 ~~vav~lSngsv~lyd~~t--g~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-----  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--GQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW-----  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--hhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec-----
Confidence            5688888999999999964  5555544 578888999999763  44577788899999999996655443322     


Q ss_pred             cceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe----CCCeEEEEeCCCCCc-ee--eeecCCCeEEEEE
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY----ESSSFTIWDVAQGLG-TP--IRRGFGGLSILKW  262 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~----d~g~i~iwd~~~~~~-~~--~~~~~~~v~~~~~  262 (350)
                                        ..+...+..+++..-.++.+++++.    + -.|.+||++..+. ..  ...|...|++++|
T Consensus       113 ------------------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~-A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF  173 (376)
T KOG1188|consen  113 ------------------TQQSGTPFICLDLNCKKNIIACGTELTRSD-ASVVLWDVRSEQQLLRQLNESHNDDVTQLRF  173 (376)
T ss_pred             ------------------cCCCCCcceEeeccCcCCeEEeccccccCc-eEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence                              2222245566666666777777753    3 3899999998765 22  3358899999999


Q ss_pred             cCC-CCEEEEEecCCeEEEEeCCCCce----eccccCCCCeEEEEEcCCC--CEEEEEECCCeEEEEEEeCC
Q 018806          263 SPT-GDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       263 sp~-g~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +|. -+.|++|+.||-|.+||++....    .....+...|..+.|..++  +....+...+..+|.|.-.+
T Consensus       174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            995 56789999999999999976543    3456788889999999998  65555556666677665443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.65  E-value=6.7e-14  Score=126.30  Aligned_cols=195  Identities=19%  Similarity=0.272  Sum_probs=134.7

Q ss_pred             CeeEEEEecCCCEEEEEECC---CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-C--CcEEEEecC
Q 018806          101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~~  174 (350)
                      .+.+.+|+|||++||+++.+   ..|++|++..  +.... + ..+.+.+.+++|+|||+.+++... +  ..|++|++.
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~--g~~~~-~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT--GQREK-V-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCC--CCEEE-e-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            58889999999999987654   4788999854  43222 2 234556778999999988876654 3  457788876


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~  252 (350)
                      .+. ...                         +..+. .......|+|||++|++.+...|  .|+++|+.+++...+..
T Consensus       267 ~~~-~~~-------------------------l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~  319 (417)
T TIGR02800       267 GKQ-LTR-------------------------LTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF  319 (417)
T ss_pred             CCC-EEE-------------------------CCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            322 111                         22221 34456789999999988765433  68888988877666655


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCC---eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECC-C-eEEEEEEeCC
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDG---TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG-S-LTLGSIHFAS  327 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~-~~~~~~~~~~  327 (350)
                      +......+.|+|+|++|+.++.++   .|++||+.++....+... ......+|+|||++|+++... . ..++......
T Consensus       320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            556677889999999998887765   899999988766544432 234567899999999888732 2 3444444433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=4.4e-14  Score=112.47  Aligned_cols=99  Identities=25%  Similarity=0.495  Sum_probs=77.5

Q ss_pred             CceeeEEECCCCCeEEEEE--eCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec---CCeEEEEeCCCCc
Q 018806          213 EQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWT  287 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~--~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---d~~v~iwd~~~~~  287 (350)
                      +.|.+++|+|+|+.+++..  .+ +.|.+||++ ++..... +...+..+.|+|+|++|++++.   .|.|.+||.++.+
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~-~~v~lyd~~-~~~i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMP-AKVTLYDVK-GKKIFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCC-cccEEEcCc-ccEeEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            5799999999999976553  45 489999997 3332222 3567788999999999998864   4679999999877


Q ss_pred             eeccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          288 SEPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       288 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      ......|. .++.++|+|||++|+++..
T Consensus       137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  137 KISTFEHS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             EeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence            76555554 4789999999999999863

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=5.4e-15  Score=127.29  Aligned_cols=217  Identities=17%  Similarity=0.199  Sum_probs=149.8

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (350)
                      +.+.|+||++-                  |.|+.|+.+|.+|++||.|-.+.|||..  ..+....+..+|...|.+++|
T Consensus        42 lE~eL~GH~GC------------------VN~LeWn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKF  101 (758)
T KOG1310|consen   42 LEAELTGHTGC------------------VNCLEWNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKF  101 (758)
T ss_pred             hhhhhccccce------------------ecceeecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEee
Confidence            34567888766                  9999999999999999999999999985  366677777799999999999


Q ss_pred             eeC--CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEE
Q 018806          153 RPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLAS  229 (350)
Q Consensus       153 sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~  229 (350)
                      -|.  ++.+++++.|..|+++|+........ ..+              .......+..|. ..|..++-.|++ ..+.+
T Consensus       102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~-d~~--------------~~~~~~~~~cht-~rVKria~~p~~Phtfws  165 (758)
T KOG1310|consen  102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM-DHG--------------MEETTRCWSCHT-DRVKRIATAPNGPHTFWS  165 (758)
T ss_pred             eccCCCeEEEeccCcceEEEEeccccccccc-ccC--------------ccchhhhhhhhh-hhhhheecCCCCCceEEE
Confidence            885  34566677799999999983211100 000              001112234455 588899999998 66778


Q ss_pred             EEeCCCeEEEEeCCCCCcee--------ee---ecCCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCC--------Cce-
Q 018806          230 ASYESSSFTIWDVAQGLGTP--------IR---RGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNT--------WTS-  288 (350)
Q Consensus       230 ~~~d~g~i~iwd~~~~~~~~--------~~---~~~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~--------~~~-  288 (350)
                      ++.| |+|+-+|++......        +.   ..--...++.++|.. .+|++|+.|--.++||.+.        ++. 
T Consensus       166 asED-GtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~  244 (758)
T KOG1310|consen  166 ASED-GTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN  244 (758)
T ss_pred             ecCC-cceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence            8888 899999999742111        00   111346789999965 4678999999999999432        110 


Q ss_pred             ---------ecc--ccCC-----------CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          289 ---------EPW--SSTS-----------GFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       289 ---------~~~--~~~~-----------~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                               ...  ..|-           ..++-+.|+|+|.-|++.-++. .+|..++..
T Consensus       245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~  304 (758)
T KOG1310|consen  245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNE  304 (758)
T ss_pred             CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecC
Confidence                     000  0111           1257789999999988876554 555555543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.65  E-value=2e-14  Score=125.78  Aligned_cols=206  Identities=11%  Similarity=0.132  Sum_probs=135.7

Q ss_pred             eeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCce----------------------eEe--cCCCCCCeeE---EEEe
Q 018806          102 LQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDA----------------------CIL--TSDSQRDVKV---LEWR  153 (350)
Q Consensus       102 V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~----------------------~~~--~~~~~~~v~~---~~~s  153 (350)
                      |.+++|.|+. ..+++|+.||.|.|||+.-......                      ..+  ...+...|.+   +.+.
T Consensus       147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f  226 (720)
T KOG0321|consen  147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF  226 (720)
T ss_pred             cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence            8888888865 6788899999999999853210000                      000  0123333444   4444


Q ss_pred             eCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCC--CCceeeEEECCCCCeEEEE
Q 018806          154 PNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--GEQITALSWGPDGRYLASA  230 (350)
Q Consensus       154 p~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~  230 (350)
                      .|...|+++|. |+.|+|||++............                 .+.+..|.  .-.+.++.....|.+|++.
T Consensus       227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-----------------~~~~~t~skrs~G~~nL~lDssGt~L~As  289 (720)
T KOG0321|consen  227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-----------------SDKYPTHSKRSVGQVNLILDSSGTYLFAS  289 (720)
T ss_pred             eccceeeeccCCCcceEEEeecccccccccCCCc-----------------ccCccCcccceeeeEEEEecCCCCeEEEE
Confidence            56688888888 8999999998544332221110                 01111111  1356778888888999888


Q ss_pred             EeCCCeEEEEeCCCCCceeeeecCC-----CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEE
Q 018806          231 SYESSSFTIWDVAQGLGTPIRRGFG-----GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATW  303 (350)
Q Consensus       231 ~~d~g~i~iwd~~~~~~~~~~~~~~-----~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~  303 (350)
                      +.| +.|++|++.+-.......+.+     -...-..+|++.+|++|+.|...++|.+.+.+.  ..+.+|.-.|+.++|
T Consensus       290 CtD-~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w  368 (720)
T KOG0321|consen  290 CTD-NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW  368 (720)
T ss_pred             ecC-CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee
Confidence            889 499999998765544333222     122345789999999999999999999998776  456789999999999


Q ss_pred             cCCCCE-EEEEECCCeEEEEEEeC
Q 018806          304 DPEGRM-ILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       304 s~~g~~-l~~~~~~~~~~~~~~~~  326 (350)
                      .|.... ++++ .++..+..|++.
T Consensus       369 ~pS~~t~v~Tc-SdD~~~kiW~l~  391 (720)
T KOG0321|consen  369 LPSATTPVATC-SDDFRVKIWRLS  391 (720)
T ss_pred             ccccCCCceee-ccCcceEEEecc
Confidence            885433 3334 444555566554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.64  E-value=2.8e-14  Score=113.78  Aligned_cols=229  Identities=16%  Similarity=0.240  Sum_probs=161.7

Q ss_pred             CeeEEEEec--C-CCEEEEEEC----CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC----eEEEEecCCcEE
Q 018806          101 DLQGVSWHQ--H-KHIVAFISG----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG----RSLSVGCKGGIC  169 (350)
Q Consensus       101 ~V~~v~~sp--~-g~~la~~s~----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~d~~v~  169 (350)
                      .+.++.||.  + +.+||.|+.    .+.|.|..++..+++....-...|.-+++.+.|.|+..    .+++ +++..++
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLA-Ts~D~LR  124 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLA-TSSDFLR  124 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhh-cccCeEE
Confidence            578888883  2 358888873    57888888876666655555557999999999999842    2444 4456799


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCC--
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL--  246 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~--  246 (350)
                      +|.+............                 +......+...+++++.|+. +-++|.+++-|. ++.|||+.++.  
T Consensus       125 lWri~~ee~~~~~~~~-----------------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT-TCTiWdie~~~~~  186 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSV-----------------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT-TCTIWDIETGVSG  186 (364)
T ss_pred             EEeccCcCCceehhhh-----------------hccCcccccCCcccccccccCCcceeEeecccC-eEEEEEEeecccc
Confidence            9998843221111110                 00011223346899999986 667888999995 99999999873  


Q ss_pred             --ceeeeecCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCceecccc----CCCCeEEEEEcCCC-CEEEEEEC--C
Q 018806          247 --GTPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEG-RMILLAFA--G  316 (350)
Q Consensus       247 --~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~g-~~l~~~~~--~  316 (350)
                        ..++..|...|..++|...+. .+|+.+.||.|++||++..+..++..    ...+...++|+++. +++|+-.-  .
T Consensus       187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence              345778999999999998665 56889999999999999887654432    24578899999866 44554433  3


Q ss_pred             CeEEEEEEeCCCCC-CCceeecccccceeeccc
Q 018806          317 SLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLT  348 (350)
Q Consensus       317 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  348 (350)
                      .+.+.++++...+. .+.+|...|.+..+.+-+
T Consensus       267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHS  299 (364)
T ss_pred             eEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence            35555566655554 889999999988887654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=4.8e-14  Score=113.29  Aligned_cols=157  Identities=9%  Similarity=0.172  Sum_probs=124.5

Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      ......|.++.|+|.++.|++++.||.+++|++........+                          .| ..++.+.+|
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--------------------------~~-~~plL~c~F   62 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--------------------------KH-GAPLLDCAF   62 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--------------------------ec-CCceeeeec
Confidence            345678999999999999999999999999999844222211                          12 369999999


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEE
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTG  300 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~  300 (350)
                      .+ ...+++++.| |.|+.+|+.++....+..|..++.++.+++-...+++|+.|++|++||.+.....-.......|.+
T Consensus        63 ~d-~~~~~~G~~d-g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~  140 (323)
T KOG1036|consen   63 AD-ESTIVTGGLD-GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYC  140 (323)
T ss_pred             cC-CceEEEeccC-ceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEE
Confidence            87 4678899999 799999999999988999999999999999888899999999999999997544444445557887


Q ss_pred             EEEcCCCCEEEEEE-CCCeEEEEEEeCCC
Q 018806          301 ATWDPEGRMILLAF-AGSLTLGSIHFASK  328 (350)
Q Consensus       301 ~~~s~~g~~l~~~~-~~~~~~~~~~~~~~  328 (350)
                      +..+  |..|++|+ +..+.+|+++.-..
T Consensus       141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  141 MDVS--GNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             Eecc--CCEEEEeecCceEEEEEcccccc
Confidence            7655  66777766 55566777665543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.9e-14  Score=115.98  Aligned_cols=151  Identities=18%  Similarity=0.247  Sum_probs=115.3

Q ss_pred             eeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCe
Q 018806          147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY  226 (350)
Q Consensus       147 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  226 (350)
                      ..++.|++.|..++.+..+|.|.|||+.+.+                         .-+.+.+|. .+|++++||+||+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------------------------iar~lsaH~-~pi~sl~WS~dgr~   79 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------------------------IARMLSAHV-RPITSLCWSRDGRK   79 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------hhhhhhccc-cceeEEEecCCCCE
Confidence            7899999998888888889999999998433                         234466776 69999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCCceeeeecCCC-----------------------------------------------eEE
Q 018806          227 LASASYESSSFTIWDVAQGLGTPIRRGFGG-----------------------------------------------LSI  259 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~-----------------------------------------------v~~  259 (350)
                      |++++.|. .|.+||+..|.+........+                                               ..+
T Consensus        80 LltsS~D~-si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~  158 (405)
T KOG1273|consen   80 LLTSSRDW-SIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASH  158 (405)
T ss_pred             eeeecCCc-eeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccc
Confidence            99999996 999999998843211111110                                               112


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cC-CCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-ST-SGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~-~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      ..|.+.|++|++|...|.+.+||..+.++.... -. ...|.++.++..|+.|++-+ +..++.+.++
T Consensus       159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            236677899999999999999999998874322 22 36789999999999999877 5556666655

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.62  E-value=3.8e-14  Score=113.29  Aligned_cols=229  Identities=18%  Similarity=0.245  Sum_probs=150.5

Q ss_pred             hhhhhhccccccCCCCcCCCCc--c----------------------CeeEEEEecCC---CEEEEEECCCeEEEEEccC
Q 018806           78 HGIISHSIKPLLHPDHVHLLPE--V----------------------DLQGVSWHQHK---HIVAFISGSTQVIVRDYED  130 (350)
Q Consensus        78 ~gh~~~~~~~~~~p~~~~~~~~--~----------------------~V~~v~~sp~g---~~la~~s~d~~i~iw~~~~  130 (350)
                      .||...+-...++|-+.-+...  +                      .|++-++||-.   .+||+|..+-.|++.|+..
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            3676677777777754332221  1                      46666777633   4677777888888888844


Q ss_pred             CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC-CCCceeecccccccceecCCCCCceEEeeecc
Q 018806          131 SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLR  208 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (350)
                        |.....+ .+|.+.|.++.|+|..+.+++.++ ||.|++||++.. +....+....           ..+-...+.-.
T Consensus       178 --Gs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn-----------~k~~p~~~~n~  243 (397)
T KOG4283|consen  178 --GSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN-----------TKRPPILKTNT  243 (397)
T ss_pred             --Ccceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc-----------CccCccccccc
Confidence              6666666 589999999999999888777666 899999999843 2111111110           00001122233


Q ss_pred             CCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee----ecC---CCeEEEEEcCCCCEEEEEecCCeEEEE
Q 018806          209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGF---GGLSILKWSPTGDYFFAAKFDGTFYLW  281 (350)
Q Consensus       209 ~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~----~~~---~~v~~~~~sp~g~~l~~~~~d~~v~iw  281 (350)
                      .|. +.+..++|+.+|.++++++.|+ .+++|+..+|......    .++   +.-..+. +.+...++.--.++.+.++
T Consensus       244 ah~-gkvngla~tSd~~~l~~~gtd~-r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall  320 (397)
T KOG4283|consen  244 AHY-GKVNGLAWTSDARYLASCGTDD-RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALL  320 (397)
T ss_pred             ccc-ceeeeeeecccchhhhhccCcc-ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEE
Confidence            454 7999999999999999999996 9999999988532111    111   1111122 3344444444556899999


Q ss_pred             eCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          282 ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       282 d~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      ++-.+.. ..+..|...+.+.++-|+=+...++. +..+..|..
T Consensus       321 ~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  321 NLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            9988887 45667888899999999988888775 433443433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.3e-13  Score=124.43  Aligned_cols=176  Identities=19%  Similarity=0.293  Sum_probs=121.7

Q ss_pred             eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---CcEEEEecCCCCCCceeecccccccceecCCCC
Q 018806          122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG  198 (350)
Q Consensus       122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (350)
                      .|.+||.+   +.....+. .+...+.+++|+|||+.+++++.+   ..+++||+..+.. ..                 
T Consensus       185 ~l~i~D~~---g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~-----------------  242 (433)
T PRK04922        185 ALQVADSD---GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL-----------------  242 (433)
T ss_pred             EEEEECCC---CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE-----------------
Confidence            57788874   33334443 456789999999999988887753   4688999863321 11                 


Q ss_pred             CceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec-C
Q 018806          199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D  275 (350)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d  275 (350)
                              +... .+...+++|+|||+.|+.....+|  .|++||+.+++...+..+......++|+|||++|+..+. +
T Consensus       243 --------l~~~-~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~  313 (433)
T PRK04922        243 --------VASF-RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG  313 (433)
T ss_pred             --------eccC-CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence                    1111 134457899999998875533223  699999998877666655555667899999999887764 3


Q ss_pred             C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCCC
Q 018806          276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASK  328 (350)
Q Consensus       276 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~~  328 (350)
                      +  .|+++|+.+++...+.........++|+|||++|++...  +...++.+++...
T Consensus       314 g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        314 GRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            4  477888888777655544445567899999999998763  2346777776443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=2.4e-14  Score=123.07  Aligned_cols=168  Identities=20%  Similarity=0.265  Sum_probs=126.7

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG  191 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  191 (350)
                      ..++.++.||.+.|.+-.   ++....+ ..|.+.+.+-+|+|||.-++++|.||.|++|.-. +..             
T Consensus        76 d~~~i~s~DGkf~il~k~---~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GML-------------  137 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS---ARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GML-------------  137 (737)
T ss_pred             ceEEEEcCCceEEEeccc---chhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chH-------------
Confidence            567788999999888743   4333333 4799999999999999999999999999999865 111             


Q ss_pred             eecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-CceeeeecCCCeEEEEEcCCCCEEE
Q 018806          192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFF  270 (350)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~  270 (350)
                                   +.........|.|++|.|+...++.+..+  .+.|=.+... +......|++-|.++.|++....++
T Consensus       138 -------------RStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~  202 (737)
T KOG1524|consen  138 -------------RSTVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA  202 (737)
T ss_pred             -------------HHHHhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCcccccee
Confidence                         11111124689999999999888887654  6777666544 3456678999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEE
Q 018806          271 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       271 ~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      +|++|-..+|||...........|+.+|++++|.|+ +.++++
T Consensus       203 sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  203 SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             ecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeee
Confidence            999999999999876555555566667777777776 333334

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.6e-13  Score=111.50  Aligned_cols=190  Identities=18%  Similarity=0.373  Sum_probs=129.7

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCC--Cc--------eeEec-CCCCCCeeEEEEeeCCCeEEEEec-C
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEG--KD--------ACILT-SDSQRDVKVLEWRPNGGRSLSVGC-K  165 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~--~~--------~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~-d  165 (350)
                      ..+|+|++|-|.+ +-|+.|...| |.||..+....  ..        ...+. .+| .+|++++|++||..+++++. +
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            4489999999976 5677777766 88998752111  10        01111 134 58999999999998888887 5


Q ss_pred             CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC-C
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-Q  244 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~-~  244 (350)
                      ..|.|||.+.+........                          ..+.++-+.|||||.+|++++-| +..++|+.. +
T Consensus       218 ssi~iWdpdtg~~~pL~~~--------------------------glgg~slLkwSPdgd~lfaAt~d-avfrlw~e~q~  270 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPK--------------------------GLGGFSLLKWSPDGDVLFAATCD-AVFRLWQENQS  270 (445)
T ss_pred             ceEEEEcCCCCCccccccc--------------------------CCCceeeEEEcCCCCEEEEeccc-ceeeeehhccc
Confidence            9999999996654433211                          13678899999999999999999 699999544 3


Q ss_pred             CCceeeeecCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCc----------eecc---------cc----CCCCeEE
Q 018806          245 GLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT----------SEPW---------SS----TSGFVTG  300 (350)
Q Consensus       245 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~----------~~~~---------~~----~~~~v~~  300 (350)
                      ....+.....+.|...+|+|+|++|+.. +..-.++-.......          ...+         ..    ..+++.+
T Consensus       271 wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~  350 (445)
T KOG2139|consen  271 WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQC  350 (445)
T ss_pred             ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccce
Confidence            3344444556799999999999987544 333333332221110          0000         01    1467899


Q ss_pred             EEEcCCCCEEEEEECCC
Q 018806          301 ATWDPEGRMILLAFAGS  317 (350)
Q Consensus       301 ~~~s~~g~~l~~~~~~~  317 (350)
                      ++|.|.|.+|++...+.
T Consensus       351 lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  351 LAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             eeECCCCCEEEEEEcCC
Confidence            99999999999987444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=5.7e-13  Score=109.71  Aligned_cols=192  Identities=15%  Similarity=0.189  Sum_probs=133.3

Q ss_pred             eeEEEEecCCCEEEEEECC--CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGS--TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      |-.+-||.  .++|..+.+  +.+++.++.  ....++.+.  ...+|.+++++.+  +++++-.+. |+|||+...+..
T Consensus        49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~K--k~~~ICe~~--fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklL  119 (391)
T KOG2110|consen   49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFK--KKTTICEIF--FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLL  119 (391)
T ss_pred             EEEeeccc--ceeEEEecCCCceEEEEEcc--cCceEEEEe--cCCceEEEEEccc--eEEEEEccc-EEEEecccceee
Confidence            44445554  456655543  458888884  466667665  3457999999754  555555544 999999843332


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEE-EeCCCeEEEEeCCCCCcee-eeecCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTP-IRRGFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~g~i~iwd~~~~~~~~-~~~~~~~v  257 (350)
                      ..+..                      ... +...+.++++++.+.+++.- +.+.|.|.+||+.+-+... +..|++.+
T Consensus       120 hTI~t----------------------~~~-n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l  176 (391)
T KOG2110|consen  120 HTIET----------------------TPP-NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL  176 (391)
T ss_pred             hhhhc----------------------cCC-CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce
Confidence            22221                      111 23456777777777788864 4455899999999877654 55799999


Q ss_pred             EEEEEcCCCCEEEEEecCCe-EEEEeCCCCcee-ccccC--CCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          258 SILKWSPTGDYFFAAKFDGT-FYLWETNTWTSE-PWSST--SGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~-v~iwd~~~~~~~-~~~~~--~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      .+++|+++|.+||++++.|+ |||+.+.+|+.. ++...  ...|.+++|+|++++|++++ .+.+.++.+..
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99999999999999999885 799999999874 33322  34688999999999998776 44455555543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=4.2e-14  Score=127.38  Aligned_cols=172  Identities=16%  Similarity=0.164  Sum_probs=121.7

Q ss_pred             eeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~  179 (350)
                      ..+++|+|||++|++++ .+|.+.||.++..++. ...+. .+...+..+.|+|||+.+++++. ++...||+++..+..
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            45789999999998865 6887777766543343 33443 45667889999999988887765 588899987643321


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  259 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~  259 (350)
                      ...                        + .+. .  ...+|+|||++|++.+.+  .+.+||+.+++...+... .....
T Consensus       328 ~~~------------------------l-~~~-~--~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g~~~~lt~~-~~~~~  376 (429)
T PRK01742        328 ASL------------------------V-GGR-G--YSAQISADGKTLVMINGD--NVVKQDLTSGSTEVLSST-FLDES  376 (429)
T ss_pred             eEE------------------------e-cCC-C--CCccCCCCCCEEEEEcCC--CEEEEECCCCCeEEecCC-CCCCC
Confidence            111                        1 121 2  457899999999988776  466799998876544332 23456


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCC--CCc-eeccccCCCCeEEEEEcCC
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETN--TWT-SEPWSSTSGFVTGATWDPE  306 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~--~~~-~~~~~~~~~~v~~~~~s~~  306 (350)
                      +.|+|||++|++++.++.+.+|.+.  +++ ...+..+.+.+..++|+|-
T Consensus       377 ~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        377 PSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            8899999999999888877777642  344 4566677888899999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.60  E-value=4.7e-14  Score=111.04  Aligned_cols=217  Identities=16%  Similarity=0.169  Sum_probs=139.6

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|+++.|-.+++ |.+|...|.+++|++.+  ......+...+...|+.+.--|+ ..+.+-+.|..+.+|++......
T Consensus        15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt--~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i   90 (323)
T KOG0322|consen   15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQT--ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI   90 (323)
T ss_pred             chheehhhccchh-hhcccccceEEEEEeec--CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceE
Confidence            3588888887776 77899999999999964  33333332246778999999998 78999999999999999852211


Q ss_pred             ce--------------eecccccccceecCCCCCc-------------eEEee-eccCCCCCceeeEEECCC--CCeEEE
Q 018806          180 AS--------------VRSGAASFLGALSRGPGTR-------------WTLVD-FLRSQNGEQITALSWGPD--GRYLAS  229 (350)
Q Consensus       180 ~~--------------~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~v~~~~~sp~--g~~l~~  229 (350)
                      ..              +..........+.....+.             ....+ .-.+. .+.+++..+..+  .+.++.
T Consensus        91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~K-lgsvmc~~~~~~c~s~~lll  169 (323)
T KOG0322|consen   91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSK-LGSVMCQDKDHACGSTFLLL  169 (323)
T ss_pred             EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccc-cCceeeeeccccccceEEEE
Confidence            10              0000000000000000000             00000 01111 246666665432  344556


Q ss_pred             EEeCCCeEEEEeCCCCCc---------------------------------------------------------eeeee
Q 018806          230 ASYESSSFTIWDVAQGLG---------------------------------------------------------TPIRR  252 (350)
Q Consensus       230 ~~~d~g~i~iwd~~~~~~---------------------------------------------------------~~~~~  252 (350)
                      ++.++|.+.+||+.++..                                                         ..+..
T Consensus       170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l  249 (323)
T KOG0322|consen  170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL  249 (323)
T ss_pred             EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence            666668999999987500                                                         00001


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      .+.++..+.+-||++.+|+++.|+.|+||+.++.... .+..|...|.+++|+|+...+|.++ |..+.+|
T Consensus       250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW  320 (323)
T KOG0322|consen  250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW  320 (323)
T ss_pred             cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence            1234566778899999999999999999999998874 5678999999999999988888776 4444444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.1e-13  Score=120.24  Aligned_cols=184  Identities=17%  Similarity=0.233  Sum_probs=116.2

Q ss_pred             EEEEEECC-C--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---CcEEEEecCCCCCCceeeccc
Q 018806          113 IVAFISGS-T--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGA  186 (350)
Q Consensus       113 ~la~~s~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~  186 (350)
                      .||..+.. +  .|.++|.+   +.....+. .+...+.+.+|+|||+.+++.+.+   ..|.+||+..+.. ..+    
T Consensus       165 ~iayv~~~~~~~~L~~~D~d---G~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l----  235 (427)
T PRK02889        165 RIAYVIKTGNRYQLQISDAD---GQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVV----  235 (427)
T ss_pred             EEEEEEccCCccEEEEECCC---CCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEe----
Confidence            45544432 3  45555543   44434443 466789999999999888887753   4589999874321 111    


Q ss_pred             ccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEE--EeCCCCCceeeeecCCCeEEEEEcC
Q 018806          187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI--WDVAQGLGTPIRRGFGGLSILKWSP  264 (350)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~i--wd~~~~~~~~~~~~~~~v~~~~~sp  264 (350)
                                           ... .+.+...+|+|||+.|+.....+|...+  +|+.++....+..+........|+|
T Consensus       236 ---------------------~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp  293 (427)
T PRK02889        236 ---------------------ANF-KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSP  293 (427)
T ss_pred             ---------------------ecC-CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcC
Confidence                                 111 1355688999999998865433355444  5666665555555555566789999


Q ss_pred             CCCEEEEEec-CCeEEEE--eCCCCceeccccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEEEeCC
Q 018806          265 TGDYFFAAKF-DGTFYLW--ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFAS  327 (350)
Q Consensus       265 ~g~~l~~~~~-d~~v~iw--d~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~~~~~~~~~~  327 (350)
                      ||++|+..+. ++...||  ++.+++...+..........+|||||++|++.+..  ...++.+++..
T Consensus       294 DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        294 DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence            9999876654 3444444  55666654444333445578999999999987632  24567777654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.59  E-value=3.6e-14  Score=114.98  Aligned_cols=185  Identities=13%  Similarity=0.160  Sum_probs=129.2

Q ss_pred             CCCccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEec--CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEe
Q 018806           96 LLPEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  172 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd  172 (350)
                      ..++..|+.+.++|+. ++|+++|.|..|++|++.+  ..++..+-  .+|.+.|.++.|+++|.+++++|.|..+++|+
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~--~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT--DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccC--CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence            4457789999999976 7899999999999999954  55555442  36999999999999999999999999999999


Q ss_pred             cCCCCCCceeec---------------c-cccccc-------------------eecCCCCCceEEeee-----------
Q 018806          173 PSYPGNAASVRS---------------G-AASFLG-------------------ALSRGPGTRWTLVDF-----------  206 (350)
Q Consensus       173 ~~~~~~~~~~~~---------------~-~~~~~~-------------------~~~~~~~~~~~~~~~-----------  206 (350)
                      +..+.....+..               . ...+..                   .++-+..+.+.+|..           
T Consensus       210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vk  289 (385)
T KOG1034|consen  210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVK  289 (385)
T ss_pred             cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccC
Confidence            983321111110               0 000000                   022233333334432           


Q ss_pred             -----------ccCCCCCceeeE--EECCCCCeEEEEEeCCCeEEEEeCCCCCcee---eeec--CCCeEEEEEcCCCCE
Q 018806          207 -----------LRSQNGEQITAL--SWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRG--FGGLSILKWSPTGDY  268 (350)
Q Consensus       207 -----------~~~~~~~~v~~~--~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~---~~~~--~~~v~~~~~sp~g~~  268 (350)
                                 +.-. ...|+.+  +|.|-++.|+.+... |.|.+||++......   +..+  ...|...+|+.||.+
T Consensus       290 p~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq~-g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~  367 (385)
T KOG1034|consen  290 PPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQS-GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSI  367 (385)
T ss_pred             CCccceeeeeEeccC-ccceEEEEEeecHHHHHHhhccCC-CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcE
Confidence                       1111 1234444  456778899999988 799999999876532   2222  356899999999999


Q ss_pred             EEEEecCCeEEEEeCC
Q 018806          269 FFAAKFDGTFYLWETN  284 (350)
Q Consensus       269 l~~~~~d~~v~iwd~~  284 (350)
                      |+...+|++|.-||..
T Consensus       368 lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  368 LVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEeCCCcEEEEEee
Confidence            9999999999999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=6.3e-13  Score=103.62  Aligned_cols=197  Identities=14%  Similarity=0.163  Sum_probs=142.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +|+++.+.|..+-|++++.|+.++-||+++  |+....+ .+|.+.|.++.--.....+++++.||++++||.++.++..
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~--G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~  192 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLED--GRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS  192 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecC--CEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE
Confidence            689999999988888888999999999965  6554544 6999999999985555789999999999999999877766


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  260 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~  260 (350)
                      .+....                -...++.|....|.+++-+  ..++++++..  .+.+|.+++.++..++.....+..+
T Consensus       193 ~ie~yk----------------~~~~lRp~~g~wigala~~--edWlvCGgGp--~lslwhLrsse~t~vfpipa~v~~v  252 (325)
T KOG0649|consen  193 MIEPYK----------------NPNLLRPDWGKWIGALAVN--EDWLVCGGGP--KLSLWHLRSSESTCVFPIPARVHLV  252 (325)
T ss_pred             Eecccc----------------ChhhcCcccCceeEEEecc--CceEEecCCC--ceeEEeccCCCceEEEecccceeEe
Confidence            554331                1122344444566777664  5688888765  6999999999999888888899999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      .|-.|  .++.++..+.|.-|.+..--...........++..|+-.--.+++..+.+..+-.
T Consensus       253 ~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i  312 (325)
T KOG0649|consen  253 DFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI  312 (325)
T ss_pred             eeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence            98544  6777888888988877532223333344456666665554444444444434333

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=1.5e-12  Score=105.38  Aligned_cols=174  Identities=14%  Similarity=0.141  Sum_probs=122.8

Q ss_pred             CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC-CCCceeecccccccceecCCCCC
Q 018806          121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGT  199 (350)
Q Consensus       121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~  199 (350)
                      ..+.|||=  ....++..+  ....+|.++.+.++   .+++.-++.|+||.+... +....                  
T Consensus        75 NkviIWDD--~k~~~i~el--~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~------------------  129 (346)
T KOG2111|consen   75 NKVIIWDD--LKERCIIEL--SFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHV------------------  129 (346)
T ss_pred             ceEEEEec--ccCcEEEEE--EeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheee------------------
Confidence            46778882  223333333  35678999999876   344556788999988732 22111                  


Q ss_pred             ceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc---eeeeecCCCeEEEEEcCCCCEEEEEecCC
Q 018806          200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTGDYFFAAKFDG  276 (350)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  276 (350)
                          ..+...  +....++.-..+...|++-+...|.|.|-|+...+.   ..+..|...|.+++.+-+|..+|+++..|
T Consensus       130 ----~et~~N--PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG  203 (346)
T KOG2111|consen  130 ----IETRSN--PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG  203 (346)
T ss_pred             ----eecccC--CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence                111221  234555554555667888777779999999987665   56778999999999999999999999998


Q ss_pred             e-EEEEeCCCCceec-cc--cCCCCeEEEEEcCCCCEEEEEECCC-eEEEEEEe
Q 018806          277 T-FYLWETNTWTSEP-WS--STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHF  325 (350)
Q Consensus       277 ~-v~iwd~~~~~~~~-~~--~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~~~~~  325 (350)
                      + |+|||..+|+... +.  .....|.+|+||||..+|++++++. ..++.++-
T Consensus       204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            5 7999999998843 33  3345799999999999999998654 55555554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.8e-12  Score=115.47  Aligned_cols=195  Identities=14%  Similarity=0.097  Sum_probs=130.1

Q ss_pred             CeeEEEEecCCCE-EEEEECC---CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-C--CcEEEEec
Q 018806          101 DLQGVSWHQHKHI-VAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAP  173 (350)
Q Consensus       101 ~V~~v~~sp~g~~-la~~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~  173 (350)
                      ......|||||+. ++..+.+   ..|.++|+.  +++.....  ...+......|+|||++++.... +  ..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~--tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY--TGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC--CCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            5678999999985 6665544   456666664  34433332  24556677899999988877655 3  45666676


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIR  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~  251 (350)
                      ..+ ....                         +..+. .......|+|||+.|+..+...|  .|+++|+.+++...+.
T Consensus       265 ~~g-~~~~-------------------------LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt  317 (419)
T PRK04043        265 NTK-TLTQ-------------------------ITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV  317 (419)
T ss_pred             CCC-cEEE-------------------------cccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence            522 2211                         11111 22345689999999988875433  6888899888765544


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecC---------CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE--CCCeEE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFD---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF--AGSLTL  320 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~~~  320 (350)
                      .....  ...|+|||++|+.....         ..|++.|+.+++...+... .......|+|||++|++..  .+...+
T Consensus       318 ~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L  394 (419)
T PRK04043        318 FHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL  394 (419)
T ss_pred             cCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence            32211  35899999998766543         3788999999887666654 2344689999999998876  344568


Q ss_pred             EEEEeCCCC
Q 018806          321 GSIHFASKP  329 (350)
Q Consensus       321 ~~~~~~~~~  329 (350)
                      +.+++....
T Consensus       395 ~~~~l~g~~  403 (419)
T PRK04043        395 GIIRLNYNK  403 (419)
T ss_pred             EEEecCCCe
Confidence            888887654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.58  E-value=3.7e-14  Score=117.85  Aligned_cols=164  Identities=17%  Similarity=0.329  Sum_probs=128.3

Q ss_pred             CCCeeEEEEeeCCC-eEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC
Q 018806          144 QRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  222 (350)
Q Consensus       144 ~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  222 (350)
                      ..+|.++.|.+++. .++++|.|..|++|-+........                +.++.....+..|+ ..|+.+.|+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------------~~~V~y~s~Ls~H~-~aVN~vRf~p   75 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------------DMKVEYLSSLSRHT-RAVNVVRFSP   75 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------------ceeEEEeecccCCc-ceeEEEEEcC
Confidence            45899999998876 788888899999999874332211                12344556677886 7999999999


Q ss_pred             CCCeEEEEEeCCCeEEEEeCC--------C-----CC----ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 018806          223 DGRYLASASYESSSFTIWDVA--------Q-----GL----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~--------~-----~~----~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~  285 (350)
                      +|..|++++.+ |.|.+|-..        +     .+    ...+..|...++.++|+|++.++++++.|+.+++||+..
T Consensus        76 ~gelLASg~D~-g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   76 DGELLASGGDG-GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             CcCeeeecCCC-ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence            99999999988 799999765        2     11    112345778899999999999999999999999999999


Q ss_pred             Ccee-ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          286 WTSE-PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       286 ~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      |... .+..|...+..++|.|-++++++=+ +...+.+.+..
T Consensus       155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            9985 4668999999999999999998765 44344444433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.57  E-value=6.6e-14  Score=120.40  Aligned_cols=174  Identities=13%  Similarity=0.224  Sum_probs=129.1

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.+-.|+|||.-|++++.||.|++|.-.   |.....+ .....+|.|++|.|+.+.++++..+ .+.|=-+..... 
T Consensus       105 ~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs---GMLRStl-~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k-  178 (737)
T KOG1524|consen  105 AAISSGRWSPDGAGLLTAGEDGVIKIWSRS---GMLRSTV-VQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSK-  178 (737)
T ss_pred             hhhhhcccCCCCceeeeecCCceEEEEecc---chHHHHH-hhcCceeEEEEECCCCCceEEecCC-eEEEeecccccc-
Confidence            457888999999999999999999999953   4433333 3466789999999998888776654 344433331111 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  259 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~  259 (350)
                                              .-..+.| ++-|.++.|++....+++++.|- ..++||........-..|..+|++
T Consensus       179 ------------------------~i~WkAH-DGiiL~~~W~~~s~lI~sgGED~-kfKvWD~~G~~Lf~S~~~ey~ITS  232 (737)
T KOG1524|consen  179 ------------------------IIRWRAH-DGLVLSLSWSTQSNIIASGGEDF-RFKIWDAQGANLFTSAAEEYAITS  232 (737)
T ss_pred             ------------------------eeEEecc-CcEEEEeecCccccceeecCCce-eEEeecccCcccccCChhccceee
Confidence                                    1113455 48999999999999999999994 999999876655555668899999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ++|+|+ +.++.++. +++++          .....+.|..++||+||.++++|+...
T Consensus       233 va~npd-~~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWSY-NTARF----------SSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeeccc-cceeeeee-eeeee----------cCCCccceEEEEEcCCCceeeccccCc
Confidence            999999 66666653 33441          112346899999999999999887544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.4e-13  Score=119.57  Aligned_cols=183  Identities=17%  Similarity=0.192  Sum_probs=121.6

Q ss_pred             eeEEEEecCCCEEEEEEC-CC--eE--EEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCC
Q 018806          102 LQGVSWHQHKHIVAFISG-ST--QV--IVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSY  175 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~-d~--~i--~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~  175 (350)
                      ....+|||||++||..+. +|  .+  .+|++..........++..........+|+|||+.+++.+. ++...+|.+..
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            456799999999998663 22  23  34565432122233343333344577899999998888775 56656665432


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeec
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~  253 (350)
                      ......                      ...+..+. ..+....|||||+.|+..+.++|  .|.+||+.+++...+...
T Consensus       313 ~~~g~~----------------------~~~lt~~~-~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~  369 (428)
T PRK01029        313 DPEGQS----------------------PRLLTKKY-RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS  369 (428)
T ss_pred             cccccc----------------------eEEeccCC-CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence            110000                      01122222 35678899999999998765432  799999999987766555


Q ss_pred             CCCeEEEEEcCCCCEEEEEec---CCeEEEEeCCCCceeccccCCCCeEEEEEcCCC
Q 018806          254 FGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g  307 (350)
                      ...+....|+|||+.|+....   ...|+++|+.+++...+....+.+...+|+|-.
T Consensus       370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            556778999999998875543   357999999998887776666667888999854

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.1e-12  Score=116.80  Aligned_cols=175  Identities=16%  Similarity=0.236  Sum_probs=118.5

Q ss_pred             EEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---CcEEEEecCCCCCCceeecccccccceecCCCCC
Q 018806          123 VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  199 (350)
Q Consensus       123 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (350)
                      |.++|.+   +.....+. .+...+...+|+|||+++++.+.+   ..|.+|++..+. ...+                 
T Consensus       181 l~~~d~~---g~~~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l-----------------  238 (430)
T PRK00178        181 LQRSDYD---GARAVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQI-----------------  238 (430)
T ss_pred             EEEECCC---CCCceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEc-----------------
Confidence            5566654   33334443 456789999999999999887754   468888886332 1111                 


Q ss_pred             ceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec-C-
Q 018806          200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D-  275 (350)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d-  275 (350)
                              ... .+.+...+|+|||+.|+.....+|  .|++||+.+++...+..+........|+|||+.|+..+. + 
T Consensus       239 --------~~~-~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g  309 (430)
T PRK00178        239 --------TNF-EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG  309 (430)
T ss_pred             --------cCC-CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence                    111 134557899999999886543324  688899998877666555556677899999998876654 3 


Q ss_pred             -CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCCC
Q 018806          276 -GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASK  328 (350)
Q Consensus       276 -~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~~  328 (350)
                       ..|+++|+.+++...+..........+|+|||++|++...  +...++.+++...
T Consensus       310 ~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        310 KPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence             3688889988887655433334456789999999998863  2245666666543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=7e-14  Score=121.65  Aligned_cols=191  Identities=17%  Similarity=0.252  Sum_probs=143.8

Q ss_pred             cCeeEEEEecCCCEEEEEEC---CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ..|+.+.||..|.||++...   ...|.|..+.....+   .-+....+.|.++.|+|. ...+.+++...|+|||+...
T Consensus       522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ---~PF~kskG~vq~v~FHPs-~p~lfVaTq~~vRiYdL~kq  597 (733)
T KOG0650|consen  522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ---SPFRKSKGLVQRVKFHPS-KPYLFVATQRSVRIYDLSKQ  597 (733)
T ss_pred             CccceeeeecCCceEEEeccCCCcceEEEEeccccccc---CchhhcCCceeEEEecCC-CceEEEEeccceEEEehhHH
Confidence            47999999999999999754   356778888532222   222235678999999999 56666677789999999854


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC--ceeeeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~--~~~~~~~~  254 (350)
                      ...+.+.++                         . ..|.+++.+|.|..|+.++.|+ .+..+|+.-..  ...+..|.
T Consensus       598 elvKkL~tg-------------------------~-kwiS~msihp~GDnli~gs~d~-k~~WfDldlsskPyk~lr~H~  650 (733)
T KOG0650|consen  598 ELVKKLLTG-------------------------S-KWISSMSIHPNGDNLILGSYDK-KMCWFDLDLSSKPYKTLRLHE  650 (733)
T ss_pred             HHHHHHhcC-------------------------C-eeeeeeeecCCCCeEEEecCCC-eeEEEEcccCcchhHHhhhhh
Confidence            444443333                         2 5899999999999999999994 99999988653  34566788


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCC-------CCce---eccccCCCC----eEEEEEcCCCCEEEEEE-CCCeE
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETN-------TWTS---EPWSSTSGF----VTGATWDPEGRMILLAF-AGSLT  319 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~-------~~~~---~~~~~~~~~----v~~~~~s~~g~~l~~~~-~~~~~  319 (350)
                      ..+++++|++.-.++++|+.||++.|+.-.       +.-+   ..+.+|...    |..+.|+|...+|++++ ++.+.
T Consensus       651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir  730 (733)
T KOG0650|consen  651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR  730 (733)
T ss_pred             hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence            999999999999999999999999998432       1112   335566544    88999999999999886 44444


Q ss_pred             EE
Q 018806          320 LG  321 (350)
Q Consensus       320 ~~  321 (350)
                      +|
T Consensus       731 lf  732 (733)
T KOG0650|consen  731 LF  732 (733)
T ss_pred             ee
Confidence            43

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=1.5e-12  Score=117.59  Aligned_cols=176  Identities=19%  Similarity=0.334  Sum_probs=122.9

Q ss_pred             eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---CcEEEEecCCCCCCceeecccccccceecCCCC
Q 018806          122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG  198 (350)
Q Consensus       122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (350)
                      .|.++|.+   +.....+. .+...+...+|+|||++++++..+   ..|++||+..+.. ..                 
T Consensus       171 ~l~~~d~~---g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~-----------------  228 (417)
T TIGR02800       171 ELQVADYD---GANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EK-----------------  228 (417)
T ss_pred             eEEEEcCC---CCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EE-----------------
Confidence            46666664   33334443 456678999999999998887654   4789999874321 11                 


Q ss_pred             CceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC-
Q 018806          199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-  275 (350)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-  275 (350)
                              +..+. +.+.+++|+|||+.|++....+|  .|++||+.++....+..+........|+|||++|+..+.. 
T Consensus       229 --------~~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~  299 (417)
T TIGR02800       229 --------VASFP-GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG  299 (417)
T ss_pred             --------eecCC-CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC
Confidence                    11111 35567899999998876543222  6999999988766665555555678999999998776543 


Q ss_pred             C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEEEeCCC
Q 018806          276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFASK  328 (350)
Q Consensus       276 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~~~~~~~~~~~  328 (350)
                      +  .|+++|+.+++...+..+...+..++|+|+|++|+++...  ...++.+++...
T Consensus       300 g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       300 GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            2  6888999888776666566677889999999999988733  346777776543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=5.4e-13  Score=121.08  Aligned_cols=227  Identities=15%  Similarity=0.215  Sum_probs=143.6

Q ss_pred             CCCccCeeEEEEecCCCEEEEEECCCeEEEEEccC-CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED-SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      +.+...+++.++||+++++|++..||.|.+|.-.. ......+...+=|...|.+++|+++|..++++|..+.+-+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            33455789999999999999999999999997432 22334445545688899999999999999999999999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceE----------Eee--------eccC----------CCCCceeeEEECCCCCe
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWT----------LVD--------FLRS----------QNGEQITALSWGPDGRY  226 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--------~~~~----------~~~~~v~~~~~sp~g~~  226 (350)
                      +++  +++.+.-.+++..+..++++...          ++.        ++.+          ...+-.+.++++|.-+.
T Consensus       282 T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  282 TGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            665  44444444455555555544322          111        0000          01122344555554444


Q ss_pred             EEEEEeCCCeEEEEeCCCC-------------------------------------------------------------
Q 018806          227 LASASYESSSFTIWDVAQG-------------------------------------------------------------  245 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~-------------------------------------------------------------  245 (350)
                      ++..+.. |.|.+||+.+.                                                             
T Consensus       360 ~vln~~~-g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  360 LVLNGHP-GHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             eeecCCC-ceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            4444444 45555554322                                                             


Q ss_pred             --Ccee------eeecCCCeEEEEE-cCCCC-EEEEEecCCeEEEEeCCCCce----------ec-cccCCCCeEEEEEc
Q 018806          246 --LGTP------IRRGFGGLSILKW-SPTGD-YFFAAKFDGTFYLWETNTWTS----------EP-WSSTSGFVTGATWD  304 (350)
Q Consensus       246 --~~~~------~~~~~~~v~~~~~-sp~g~-~l~~~~~d~~v~iwd~~~~~~----------~~-~~~~~~~v~~~~~s  304 (350)
                        ....      ...|...+...++ ++... ..++++.||.++||-+...+.          .. -..|..++++++|+
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS  518 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence              1111      1123333333333 33333 678899999999998843322          10 11467889999999


Q ss_pred             CCCCEEEEEECCCeEEEEEEe
Q 018806          305 PEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       305 ~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      .||..|+++.++.+.+|..+-
T Consensus       519 ~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  519 QDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             CCCcEEEEecCCEEEEecCCC
Confidence            999999988888777776655

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=2.5e-13  Score=112.71  Aligned_cols=188  Identities=9%  Similarity=0.089  Sum_probs=133.8

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccC----CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED----SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      -|.++.||.++++||+|+.|..+++|+++.    ...+.+......|...|.+++|......+++++.+++|...|+++.
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~  137 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK  137 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc
Confidence            499999999999999999999999999863    1223334443457789999999887666666677899999999854


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC-cee---eee
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTP---IRR  252 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~-~~~---~~~  252 (350)
                      +.+..+..                        ....+.|+.+..+|-...|++.+.+ |.|.+||.+..+ ...   ...
T Consensus       138 qsi~V~~~------------------------~~~~~~VY~m~~~P~DN~~~~~t~~-~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  138 QSIYVANE------------------------NNNRGDVYHMDQHPTDNTLIVVTRA-KLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             eeeeeecc------------------------cCcccceeecccCCCCceEEEEecC-ceEEEEeccCCCCCCceeeecC
Confidence            43222111                        1123689999999998899999888 699999998765 221   222


Q ss_pred             cCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCceec--------cccCCCCeEEEEEcCCCCEEEEE
Q 018806          253 GFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      .......+.|+|... +|++.+..+-+-+||.+......        +......-.++.|+|+|.++++-
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            346688899999754 56788888889999998755311        11212222456788887776543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.3e-12  Score=116.39  Aligned_cols=176  Identities=19%  Similarity=0.278  Sum_probs=118.3

Q ss_pred             eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---CcEEEEecCCCCCCceeecccccccceecCCCC
Q 018806          122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG  198 (350)
Q Consensus       122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (350)
                      .+.++|.+   +.....+. .+...+.+..|+|||++++++..+   ..|++||+..+. ...+..              
T Consensus       199 ~l~i~d~d---G~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~--------------  259 (448)
T PRK04792        199 QLMIADYD---GYNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTS--------------  259 (448)
T ss_pred             EEEEEeCC---CCCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecC--------------
Confidence            55566764   33233333 456789999999999998887653   357777876322 111111              


Q ss_pred             CceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec-C
Q 018806          199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D  275 (350)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d  275 (350)
                              +.    +.....+|+|||+.|+.....+|  .|+++|+.+++...+..+.......+|+|||++|+..+. +
T Consensus       260 --------~~----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~  327 (448)
T PRK04792        260 --------FP----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG  327 (448)
T ss_pred             --------CC----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence                    11    23457899999999987644335  488889988877666655556678999999999876654 3


Q ss_pred             C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCCC
Q 018806          276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASK  328 (350)
Q Consensus       276 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~~  328 (350)
                      +  .|+++|+.+++...+..........+|+|||++|++...  +...++.+++...
T Consensus       328 g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        328 GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            3  677888888887655433334456799999999988763  3346777776544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.54  E-value=4.9e-13  Score=108.15  Aligned_cols=191  Identities=14%  Similarity=0.227  Sum_probs=138.4

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEc-cCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDY-EDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ...|++|.|+|..+.|++++.|..-++|.. +..+-+....+ ..++..++++.|+|..+++++++..+.|.||-++.+.
T Consensus        55 d~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN  133 (361)
T KOG1523|consen   55 DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN  133 (361)
T ss_pred             CcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEeccc
Confidence            446999999999999999999999999998 33333333333 3688999999999998888888888999999988332


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC-----CC-------
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-----QG-------  245 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~-----~~-------  245 (350)
                                            .|-+.+.++....+.|.++.|+|++-.|++++.| +.++++..-     ..       
T Consensus       134 ----------------------dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D-~k~rVfSayIK~Vdekpap~pWg  190 (361)
T KOG1523|consen  134 ----------------------DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD-GKCRVFSAYIKGVDEKPAPTPWG  190 (361)
T ss_pred             ----------------------ceehhhhhCCccccceeeeeccCCcceecccccC-cceeEEEEeeeccccCCCCCCCc
Confidence                                  2222222333334789999999999999999999 799998642     11       


Q ss_pred             Cce----eee---ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEE
Q 018806          246 LGT----PIR---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       246 ~~~----~~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      ...    .+.   ...+.+..+.|+|+|..|+-.+.|..+.+-|......  .......-+..++.|-.+...++++
T Consensus       191 sk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  191 SKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG  267 (361)
T ss_pred             cCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence            111    111   2347799999999999999999999999999877652  2233333566677776554444433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.53  E-value=2.9e-12  Score=115.64  Aligned_cols=214  Identities=14%  Similarity=0.163  Sum_probs=143.9

Q ss_pred             ccCeeEEEEecC-CCEEEEEECCCeEEEEEccCCCCC---ceeEecCCCCCCeeEEEEeeCCCe--EEEEecCCcEEEEe
Q 018806           99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK---DACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWA  172 (350)
Q Consensus        99 ~~~V~~v~~sp~-g~~la~~s~d~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~d~~v~iwd  172 (350)
                      ...|+++.|+|. ..+||.|..+|.|.+||+......   ........|..++..+.|..+-..  +++++.||.|+.|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            347999999994 578888889999999999643321   122333468999999999766444  99999999999998


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCC---CC--
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQ---GL--  246 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~---~~--  246 (350)
                      ++.-..+.........            ........  ....+++++|.+. -..++.|+.+ |.|.--+...   ..  
T Consensus       322 ~~~l~~P~e~~~~~~~------------~~~~~~~~--~~~~~t~~~F~~~~p~~FiVGTe~-G~v~~~~r~g~~~~~~~  386 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESK------------KHKGQQSS--KAVGATSLKFEPTDPNHFIVGTEE-GKVYKGCRKGYTPAPEV  386 (555)
T ss_pred             ccccccchhhcccccc------------cccccccc--cccceeeEeeccCCCceEEEEcCC-cEEEEEeccCCcccccc
Confidence            8743332221111000            00000111  1247889999884 4567777777 7887733332   22  


Q ss_pred             ----ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCC-CCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 018806          247 ----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  320 (350)
Q Consensus       247 ----~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~-~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  320 (350)
                          ......|.++|..+.++|=+..++..+.|-+++||... .... ..+..+...+++++|||-...++++.+.++.+
T Consensus       387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l  466 (555)
T KOG1587|consen  387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL  466 (555)
T ss_pred             cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence                11234577899999999987766555559999999887 3333 34556667799999999988888887766666


Q ss_pred             EEEEeCC
Q 018806          321 GSIHFAS  327 (350)
Q Consensus       321 ~~~~~~~  327 (350)
                      ..|++..
T Consensus       467 ~iWDLl~  473 (555)
T KOG1587|consen  467 DIWDLLQ  473 (555)
T ss_pred             ehhhhhc
Confidence            6666643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.52  E-value=3.5e-13  Score=109.46  Aligned_cols=179  Identities=17%  Similarity=0.286  Sum_probs=122.0

Q ss_pred             EEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceee
Q 018806          105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR  183 (350)
Q Consensus       105 v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~  183 (350)
                      .+|||+|++||+++.- .+.|-|.++  -+... ++. --..|.-+.|..|..+++.+.. ++.|.+|++...+-...+.
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~t--lq~~q-lf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSET--LQLHQ-LFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccch--hhHHH-HHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence            6899999999998766 566777643  22211 111 1246788999999777777776 5899999998555444433


Q ss_pred             cccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEc
Q 018806          184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS  263 (350)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~s  263 (350)
                      .+                          ...+.++.|||||++|+..+.-+-.|.+|.+.+.+...+...+..+..++|+
T Consensus        89 eg--------------------------~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   89 EG--------------------------QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFH  142 (447)
T ss_pred             cC--------------------------CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEEC
Confidence            33                          3689999999999887655543259999999988777666666778889999


Q ss_pred             CCCCEEEEEec-C-----------------------------------CeEEEEeCCCCceeccccCCCCeEEEEEcCCC
Q 018806          264 PTGDYFFAAKF-D-----------------------------------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       264 p~g~~l~~~~~-d-----------------------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g  307 (350)
                      |||++.+..+. |                                   ..+.+||.--........-.-.+..++|+|.+
T Consensus       143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN  222 (447)
T ss_pred             CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc
Confidence            99998876543 1                                   12333332111010011123467889999999


Q ss_pred             CEEEEEE
Q 018806          308 RMILLAF  314 (350)
Q Consensus       308 ~~l~~~~  314 (350)
                      ++|++|+
T Consensus       223 qflavGs  229 (447)
T KOG4497|consen  223 QFLAVGS  229 (447)
T ss_pred             ceEEeec
Confidence            9999996

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.8e-13  Score=114.44  Aligned_cols=173  Identities=17%  Similarity=0.235  Sum_probs=123.4

Q ss_pred             eEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeE
Q 018806          148 KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  227 (350)
Q Consensus       148 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  227 (350)
                      ..++|+.+|..+.+++.||++|||+.+.....                         .....|+ +.|.++.|+|||+.|
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-------------------------l~e~~~~-~eV~DL~FS~dgk~l  201 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-------------------------LEEIAHH-AEVKDLDFSPDGKFL  201 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh-------------------------hhhHhhc-CccccceeCCCCcEE
Confidence            78999999999999999999999997632221                         1233454 799999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeee---cCCCeEEEEEcCCC---CEE--EEEecCCeEEEEeCCCCce------ecccc
Q 018806          228 ASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTG---DYF--FAAKFDGTFYLWETNTWTS------EPWSS  293 (350)
Q Consensus       228 ~~~~~d~g~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~g---~~l--~~~~~d~~v~iwd~~~~~~------~~~~~  293 (350)
                      ++.+.+  ..++|+.+++.......   .+.-...+.|+.|+   .+.  +.....+.|..|++...+.      .+...
T Consensus       202 asig~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~  279 (398)
T KOG0771|consen  202 ASIGAD--SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK  279 (398)
T ss_pred             EEecCC--ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence            999988  69999999995544332   23346678898876   322  3333455677776654332      22233


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCC-CCceeecccccceeeccc
Q 018806          294 TSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLT  348 (350)
Q Consensus       294 ~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  348 (350)
                      ....|++++.|+||++++.|+ ++++.++...--+... ...+|..-|+..++.+-+
T Consensus       280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds  336 (398)
T KOG0771|consen  280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS  336 (398)
T ss_pred             ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc
Confidence            455799999999999999998 7777776665443322 456888888877776543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.52  E-value=7e-11  Score=103.41  Aligned_cols=208  Identities=16%  Similarity=0.227  Sum_probs=137.8

Q ss_pred             ccCeeEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCceeE--ec----------CCCCCCeeEEEEeeCCCeEEEEecC
Q 018806           99 EVDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACI--LT----------SDSQRDVKVLEWRPNGGRSLSVGCK  165 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~~~~--~~----------~~~~~~v~~~~~sp~~~~l~~~~~d  165 (350)
                      +.....++++|++++|+++.. +|.+.+++++.. +.....  ..          ........++.|+|+|+.+++....
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            334567999999999999875 899999999743 322221  11          0123457899999998888776653


Q ss_pred             -CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC-
Q 018806          166 -GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-  243 (350)
Q Consensus       166 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~-  243 (350)
                       ..|.+|++.......                     .....+..........++|+|++++++.....+++|.++++. 
T Consensus       165 ~D~v~~~~~~~~~~~l---------------------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKL---------------------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             TTEEEEEEE-TTS-TE---------------------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEEEeCCCceE---------------------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence             889999997443211                     111122222345789999999999998888766799999988 


Q ss_pred             -CCCceeee--e-------cCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCC--CCceec---cccCCCCeEEEEEcCCC
Q 018806          244 -QGLGTPIR--R-------GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEP---WSSTSGFVTGATWDPEG  307 (350)
Q Consensus       244 -~~~~~~~~--~-------~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~--~~~~~~---~~~~~~~v~~~~~s~~g  307 (350)
                       .+....+.  .       .......++++|||++|+++. .++.|.+|+++  +++...   +.........++++|+|
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence             44322211  1       112577899999999997765 46789999983  355432   22334558999999999


Q ss_pred             CEEEEEECCCeEEEEEEeCCC
Q 018806          308 RMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ++|++++.++..+..+++...
T Consensus       304 ~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETT
T ss_pred             CEEEEEecCCCeEEEEEEeCC
Confidence            999999866656666666433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=4.7e-13  Score=115.22  Aligned_cols=137  Identities=14%  Similarity=0.260  Sum_probs=101.5

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCC------------Cc--------------eeEecCCCCCCeeEEE
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEG------------KD--------------ACILTSDSQRDVKVLE  151 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~------------~~--------------~~~~~~~~~~~v~~~~  151 (350)
                      ...|+|+.|-|.+ ..++++-.+|.+.+||.....+            ..              +..+. --.+.|..++
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~in~f~  297 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IGEGSINEFA  297 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-ecccccccee
Confidence            3579999999965 4445567889999997642111            00              01111 1234789999


Q ss_pred             EeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE
Q 018806          152 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS  231 (350)
Q Consensus       152 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  231 (350)
                      |+|||++|++++.||.++|+|+........                         ++.. -+...+++|||||++|++++
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------------------------mkSY-FGGLLCvcWSPDGKyIvtGG  351 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLGV-------------------------MKSY-FGGLLCVCWSPDGKYIVTGG  351 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHHH-------------------------HHhh-ccceEEEEEcCCccEEEecC
Confidence            999999999999999999999984333222                         2222 26889999999999999999


Q ss_pred             eCCCeEEEEeCCCCCcee-eeecCCCeEEEEEc
Q 018806          232 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWS  263 (350)
Q Consensus       232 ~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~s  263 (350)
                      .|+ -|.||.+..++.+. -.+|+.+|..++|.
T Consensus       352 EDD-LVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  352 EDD-LVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             Ccc-eEEEEEeccceEEEeccccccceeeEeec
Confidence            997 99999998876553 45688999999998

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.49  E-value=1.2e-13  Score=124.64  Aligned_cols=198  Identities=16%  Similarity=0.132  Sum_probs=141.6

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|+|+.|...|.+|++|+.|..++||..++  +.+.... .+|.+.|+.++.+.+.-.+++++.|..|++|.+..+..
T Consensus       190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p  266 (1113)
T KOG0644|consen  190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--ARCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP  266 (1113)
T ss_pred             hhheeeeeeccccceEeecCccceeeeeeccc--hhhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence            34699999999999999999999999999754  6655555 58999999999998866667777799999999984332


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee-----eec
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-----RRG  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~-----~~~  253 (350)
                                               +..+.+|. +.|++++|+|-.    +.+.| |++++||.+-......     ...
T Consensus       267 -------------------------vsvLrght-gavtaiafsP~~----sss~d-gt~~~wd~r~~~~~y~prp~~~~~  315 (1113)
T KOG0644|consen  267 -------------------------VSVLRGHT-GAVTAIAFSPRA----SSSDD-GTCRIWDARLEPRIYVPRPLKFTE  315 (1113)
T ss_pred             -------------------------HHHHhccc-cceeeeccCccc----cCCCC-CceEeccccccccccCCCCCCccc
Confidence                                     34478887 799999999965    44556 8999999881100000     000


Q ss_pred             C--------------------------CCeEEEEEcCCCCEEE-----------EEecCCeEEEEeCCCCce-eccccCC
Q 018806          254 F--------------------------GGLSILKWSPTGDYFF-----------AAKFDGTFYLWETNTWTS-EPWSSTS  295 (350)
Q Consensus       254 ~--------------------------~~v~~~~~sp~g~~l~-----------~~~~d~~v~iwd~~~~~~-~~~~~~~  295 (350)
                      .                          ....+++|...+-.++           ++-.+..+++|++.+|.. ..+.+|.
T Consensus       316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             ccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence            0                          1122233333222223           333455788899988876 4567889


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC
Q 018806          296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  330 (350)
Q Consensus       296 ~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~  330 (350)
                      ..+..+.++|-...++...+.+.....|++|...+
T Consensus       396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP  430 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence            99999999998888877665556677888886544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.48  E-value=2.3e-11  Score=109.11  Aligned_cols=195  Identities=19%  Similarity=0.338  Sum_probs=141.8

Q ss_pred             CeeEEEE-ecCCC-EEEEEEC-CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806          101 DLQGVSW-HQHKH-IVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~-sp~g~-~la~~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      .+..+.+ ++++. .++..+. |+.+.+|+...  ..........|...|..++|+|++..++.++. ++.+++|+....
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG  188 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence            4666666 78887 5555444 99999999853  12223333578899999999999887777765 899999999842


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCCCcee--eeec
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTP--IRRG  253 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~~~~~--~~~~  253 (350)
                      .                         ....+.+|. ..+.+++|+|++. .+++++.| +.|++||...+....  +..|
T Consensus       189 ~-------------------------~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d-~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         189 K-------------------------PLSTLAGHT-DPVSSLAFSPDGGLLIASGSSD-GTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             c-------------------------eEEeeccCC-CceEEEEEcCCcceEEEEecCC-CcEEEEECCCCcEEeeecCCC
Confidence            1                         133345554 6999999999998 44444777 699999988666554  3345


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      .... ...|+|++..+++++.|+.+++|+.+....  .....|...+.++.|+|++..+++++.. ..+..|+..
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~~~~~~~~  314 (466)
T COG2319         242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-GTVRLWDLE  314 (466)
T ss_pred             Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-CcEEEEEcC
Confidence            4443 338999998889999999999999987664  2234678899999999999998885533 334444443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=4.8e-12  Score=104.35  Aligned_cols=154  Identities=17%  Similarity=0.253  Sum_probs=114.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC--CCCCCeeEEEEeeCCCeEEEEec-C-CcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGC-K-GGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-d-~~v~iwd~~~~  176 (350)
                      +|.+|.++.  ++|+++-.+. |+|||+..  .+.+..+..  .+...+.++++++.+.++++-+. + |.|.+||...-
T Consensus        89 ~IL~VrmNr--~RLvV~Lee~-IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   89 SILAVRMNR--KRLVVCLEES-IYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             ceEEEEEcc--ceEEEEEccc-EEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            567777764  4566655554 99999953  555554432  35556777777776667777555 3 99999999832


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ec--
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RG--  253 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~--  253 (350)
                                               .....+..|. +.+.+++|+++|.+||+++..+-.||++.+.+|+....+ .+  
T Consensus       164 -------------------------~~v~~I~aH~-~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~  217 (391)
T KOG2110|consen  164 -------------------------QPVNTINAHK-GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY  217 (391)
T ss_pred             -------------------------eeeeEEEecC-CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence                                     2345567775 799999999999999999988335799999999876433 33  


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~  285 (350)
                      ...|.+++|+|++++|++.+..++|+||.++.
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            24588999999999999999999999998864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=103.11  Aligned_cols=170  Identities=15%  Similarity=0.236  Sum_probs=121.5

Q ss_pred             CCCcCCCCccCeeEEEEec-CCC--EEEEEECCCeEEEEEccCCCC-------CceeEecCCCCCCeeEEEEeeCCCeEE
Q 018806           91 PDHVHLLPEVDLQGVSWHQ-HKH--IVAFISGSTQVIVRDYEDSEG-------KDACILTSDSQRDVKVLEWRPNGGRSL  160 (350)
Q Consensus        91 p~~~~~~~~~~V~~v~~sp-~g~--~la~~s~d~~i~iw~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~  160 (350)
                      +++........|.+..|.. ++.  +|+.|..+|.+.+||+...+.       .....-...|..+|.++.+.+.-.+=+
T Consensus       142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi  221 (323)
T KOG0322|consen  142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI  221 (323)
T ss_pred             cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence            3333444444677776543 332  455667899999999975311       011112235889999999987655666


Q ss_pred             EEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE
Q 018806          161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW  240 (350)
Q Consensus       161 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw  240 (350)
                      .++.+..+..|.+.......++..                     .+.-.+ -.+..+..-||++.+|+++.| |.|++|
T Consensus       222 sgga~dkl~~~Sl~~s~gslq~~~---------------------e~~lkn-pGv~gvrIRpD~KIlATAGWD-~RiRVy  278 (323)
T KOG0322|consen  222 SGGADDKLVMYSLNHSTGSLQIRK---------------------EITLKN-PGVSGVRIRPDGKILATAGWD-HRIRVY  278 (323)
T ss_pred             CCCccccceeeeeccccCcccccc---------------------eEEecC-CCccceEEccCCcEEeecccC-CcEEEE
Confidence            777778888998874322222111                     111112 368889999999999999999 799999


Q ss_pred             eCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          241 DVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       241 d~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      +.++.....+ ..|...|.+++|+|+...+|.++.|+.|.+|++
T Consensus       279 swrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999987664 458899999999999999999999999999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1.9e-10  Score=95.16  Aligned_cols=212  Identities=13%  Similarity=0.219  Sum_probs=144.6

Q ss_pred             cCeeEEEEecCCCEEEEEEC---CCeEEEEEccCCCCCceeEecC-CCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecC
Q 018806          100 VDLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  174 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~---d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~  174 (350)
                      ..++=++|+|++++|.++..   +|.|..|.++..+|.....-.. ....+-..++++++|+.++++... |.|.++-+.
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~  119 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ  119 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence            35778999999999998754   5788888887544543222111 122344889999998888887775 999999997


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCC----CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~  250 (350)
                      ..+.........                 ...-.+.+    ...+....+.|++++|++.....-.|.+|++..++....
T Consensus       120 ~dG~l~~~v~~~-----------------~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~  182 (346)
T COG2706         120 ADGSLQPVVQVV-----------------KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA  182 (346)
T ss_pred             cCCccccceeee-----------------ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence            655443321110                 00001000    123788999999999998864323899999998865432


Q ss_pred             e----ecCCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCC--Cceeccc---------cCCCCeEEEEEcCCCCEEEEEE
Q 018806          251 R----RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTSEPWS---------STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       251 ~----~~~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~--~~~~~~~---------~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .    ....+.+.+.|+|++++..+..+ +++|.+|..+.  ++...++         ....+...+..++||++|+++.
T Consensus       183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN  262 (346)
T COG2706         183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN  262 (346)
T ss_pred             cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence            2    33467889999999999866654 89999999887  4443322         2345678899999999999887


Q ss_pred             CCCeEEEEEEeCCC
Q 018806          315 AGSLTLGSIHFASK  328 (350)
Q Consensus       315 ~~~~~~~~~~~~~~  328 (350)
                      .+...++..++...
T Consensus       263 Rg~dsI~~f~V~~~  276 (346)
T COG2706         263 RGHDSIAVFSVDPD  276 (346)
T ss_pred             CCCCeEEEEEEcCC
Confidence            55556666666543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=3.1e-13  Score=114.36  Aligned_cols=198  Identities=16%  Similarity=0.183  Sum_probs=161.3

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      .+.-+.+.++.+|++|+.|+..|.+..+|+.+  +...+.+.  -...|.++.|-.+ ..+++++..+.++|||-. +..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t--~~L~~Ei~--v~Etv~Dv~~LHn-eq~~AVAQK~y~yvYD~~-GtE  202 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT--KKLHFEIN--VMETVRDVTFLHN-EQFFAVAQKKYVYVYDNN-GTE  202 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeeccc--ceeeeeee--hhhhhhhhhhhcc-hHHHHhhhhceEEEecCC-CcE
Confidence            44568889999999999999999999999954  55555553  4567999999887 788888999999999976 221


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v  257 (350)
                                               ...++.+  ..|..+.|-|..-.|++++.. |.++.-|+.+|+... +....+.+
T Consensus       203 -------------------------lHClk~~--~~v~rLeFLPyHfLL~~~~~~-G~L~Y~DVS~GklVa~~~t~~G~~  254 (545)
T KOG1272|consen  203 -------------------------LHCLKRH--IRVARLEFLPYHFLLVAASEA-GFLKYQDVSTGKLVASIRTGAGRT  254 (545)
T ss_pred             -------------------------Eeehhhc--CchhhhcccchhheeeecccC-CceEEEeechhhhhHHHHccCCcc
Confidence                                     1223333  588999999987777777777 899999999998765 44566888


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCC
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPP  330 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~  330 (350)
                      ..++-+|-...+-+|..+|+|.+|.....+. ..+..|.++|.++++.++|+++++++ |....||+++......
T Consensus       255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~  329 (545)
T KOG1272|consen  255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH  329 (545)
T ss_pred             chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence            8899999888899999999999999988776 56789999999999999999999988 7778888888776443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=5.1e-12  Score=109.51  Aligned_cols=187  Identities=14%  Similarity=0.153  Sum_probs=131.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCC-------CCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEe
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-------EGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  172 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd  172 (350)
                      .+|-|+.+.++++.+++|+-||+|+.|++...       +.........+|.+.|+.+++|+...+|++++.||+++.|+
T Consensus       345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE  424 (577)
T ss_pred             CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence            37999999999999999999999999966411       01122233358999999999999988999999999999999


Q ss_pred             cCCCCCCceeeccccc-ccceecC--------------C--CCCc------eEEeee--ccCC-CCCceeeEEECCCCCe
Q 018806          173 PSYPGNAASVRSGAAS-FLGALSR--------------G--PGTR------WTLVDF--LRSQ-NGEQITALSWGPDGRY  226 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~-~~~~~~~--------------~--~~~~------~~~~~~--~~~~-~~~~v~~~~~sp~g~~  226 (350)
                      ...... ..+...... .-..+.+              +  .-..      +.....  ..+. ....+..+.++|.+..
T Consensus       425 ~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~  503 (577)
T KOG0642|consen  425 PTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI  503 (577)
T ss_pred             cCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe
Confidence            873322 111111000 0000000              0  0000      001110  1111 0135677889999988


Q ss_pred             EEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          227 LASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      .+++..+ +.|+++|..++.... ...|...++++++.|+|-+|++++.|+.+++|.+....+
T Consensus       504 ~~~~hed-~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  504 TFTAHED-RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             eEecccC-CceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            8888888 699999999998764 667889999999999999999999999999999977655

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.44  E-value=2.1e-11  Score=99.27  Aligned_cols=221  Identities=15%  Similarity=0.249  Sum_probs=146.0

Q ss_pred             eeEEEEecCCCEEEE-EECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~g~~la~-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~  179 (350)
                      |.-+.|..|..+++. ...++.|.+|++..  ..-.+.+. ....++.+++|||||++++..+. +-.|.+|.+.+....
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Q--pew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQ--PEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeec--ceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            566889888876665 46788999999964  44445553 45678999999999988887766 799999999743211


Q ss_pred             cee------ecccccccc-------------------------------------eecCCCCCceE-Eeee------ccC
Q 018806          180 ASV------RSGAASFLG-------------------------------------ALSRGPGTRWT-LVDF------LRS  209 (350)
Q Consensus       180 ~~~------~~~~~~~~~-------------------------------------~~~~~~~~~~~-~~~~------~~~  209 (350)
                      ..-      ...++.+.+                                     .+.+++++.|. +++.      +.-
T Consensus       128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY  207 (447)
T KOG4497|consen  128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY  207 (447)
T ss_pred             EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence            100      000111111                                     13334455443 2221      122


Q ss_pred             CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC--------------------------------------------
Q 018806          210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--------------------------------------------  245 (350)
Q Consensus       210 ~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~--------------------------------------------  245 (350)
                      +..-.+..++|+|-+++|+.|+.| +.+++.+--+-                                            
T Consensus       208 e~~lG~k~v~wsP~~qflavGsyD-~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  208 ERGLGLKFVEWSPCNQFLAVGSYD-QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeccceeEEEeccccceEEeeccc-hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            223467889999999999999999 67776432110                                            


Q ss_pred             ----------C----cee---ee------ecCCCeEEEEEcCCCCEEEEEecC--CeEEEEeCCCCceeccccCCCCeEE
Q 018806          246 ----------L----GTP---IR------RGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTG  300 (350)
Q Consensus       246 ----------~----~~~---~~------~~~~~v~~~~~sp~g~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~  300 (350)
                                +    ...   +.      ...-++.-++|++|..++++-.+.  +.+.+||++..+.........+|..
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pira  366 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRA  366 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeE
Confidence                      0    000   00      011246679999999999887543  5899999999888766667789999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          301 ATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       301 ~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ..|+|....|+.+.++ ++++.|....
T Consensus       367 f~WdP~~prL~vctg~-srLY~W~psg  392 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGK-SRLYFWAPSG  392 (447)
T ss_pred             EEeCCCCceEEEEcCC-ceEEEEcCCC
Confidence            9999999888876544 4677776544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.2e-11  Score=112.52  Aligned_cols=217  Identities=14%  Similarity=0.212  Sum_probs=150.8

Q ss_pred             EEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC---eEEEEecCCcEEEEecCCCCCCce
Q 018806          105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG---RSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       105 v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ..||+|+++++.. .+..|.||...+  +.++..+ .+|..++..+.+.|...   .+++++.+|.|++||...+...+.
T Consensus        22 avfSnD~k~l~~~-~~~~V~VyS~~T--g~~i~~l-~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt   97 (792)
T KOG1963|consen   22 AVFSNDAKFLFLC-TGNFVKVYSTAT--GECITSL-EDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT   97 (792)
T ss_pred             cccccCCcEEEEe-eCCEEEEEecch--Hhhhhhc-ccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence            4688999988765 456799999854  7776644 58999999999988754   345667799999999874332222


Q ss_pred             eecccccc------------------------cc---------------------------------eecCCCCCceE--
Q 018806          182 VRSGAASF------------------------LG---------------------------------ALSRGPGTRWT--  202 (350)
Q Consensus       182 ~~~~~~~~------------------------~~---------------------------------~~~~~~~~~~~--  202 (350)
                      +.......                        ..                                 .+..++.+.+.  
T Consensus        98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen   98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI  177 (792)
T ss_pred             EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence            21110000                        00                                 00001111111  


Q ss_pred             -------Eee-----------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--C---CceeeeecCCCeEE
Q 018806          203 -------LVD-----------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--G---LGTPIRRGFGGLSI  259 (350)
Q Consensus       203 -------~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--~---~~~~~~~~~~~v~~  259 (350)
                             .+.           ...-|+...+++.++||.+++++++..| |.|.+|.--.  .   .+..+.-|...|.+
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~d-GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSD-GRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccC-CcEEEEeccccccccccceEEEecccccce
Confidence                   000           0111222357889999999999999999 8999996443  2   23455668899999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ++|+++|.+|++|+..+.+-+|.+.+++.+-+..-.++|..+.+|||+.+.+..+. +..+..++..+
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~-DNqI~li~~~d  323 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE-DNQIHLIKASD  323 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEec-CceEEEEeccc
Confidence            99999999999999999999999999997667788899999999999999887763 23455555543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.44  E-value=1e-10  Score=104.96  Aligned_cols=200  Identities=24%  Similarity=0.401  Sum_probs=144.2

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE-eeCCC-eEEEEec-CCcEEEEecC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-RPNGG-RSLSVGC-KGGICIWAPS  174 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~-~l~~~~~-d~~v~iwd~~  174 (350)
                      +...+.++.+++.+..++.++.|+.+.+|+..... .....+...+...+..+.+ ++++. .++..+. ++.+.+|+..
T Consensus        64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  142 (466)
T COG2319          64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS  142 (466)
T ss_pred             ccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence            34579999999999999999999999999986422 1333332223246777777 77766 3444445 7999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-CCCeEEEEeCCCCCcee-eee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTP-IRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~g~i~iwd~~~~~~~~-~~~  252 (350)
                      ..                        ......+..|. ..|..++|+|+++.++.++. + +.+++|+...+.... +..
T Consensus       143 ~~------------------------~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         143 TP------------------------GKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLD-GTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             CC------------------------CeEEEEEecCc-ccEEEEEECCCCCEEEecCCCC-CceEEEEcCCCceEEeecc
Confidence            40                        11234456665 68899999999998888875 7 699999999865554 444


Q ss_pred             cCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCceec--cccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          253 GFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      |...+.+++|+|++. .+++++.|+.|++||...+....  +..|.... -..|+|++.++++++ ++...++..+.
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence            788999999999998 55555899999999988776644  56666664 338999997777554 44445554443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.43  E-value=2.7e-13  Score=114.72  Aligned_cols=187  Identities=16%  Similarity=0.216  Sum_probs=142.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~~  179 (350)
                      .|.++.|-.+.+++|++ ....++|||-.   |..+..+. . ...|..+.|-|. ..|++++++ |.++--|+..++..
T Consensus       172 tv~Dv~~LHneq~~AVA-QK~y~yvYD~~---GtElHClk-~-~~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklV  244 (545)
T KOG1272|consen  172 TVRDVTFLHNEQFFAVA-QKKYVYVYDNN---GTELHCLK-R-HIRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLV  244 (545)
T ss_pred             hhhhhhhhcchHHHHhh-hhceEEEecCC---CcEEeehh-h-cCchhhhcccch-hheeeecccCCceEEEeechhhhh
Confidence            58889999888988875 56678899953   66666553 3 357999999998 666666665 99999999977776


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce-eeeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~-~~~~~~~~v~  258 (350)
                      ..+.++                          .+.+..+.-+|-.-.+-.|... |+|.+|.-...+.. .+..|.++|.
T Consensus       245 a~~~t~--------------------------~G~~~vm~qNP~NaVih~Ghsn-GtVSlWSP~skePLvKiLcH~g~V~  297 (545)
T KOG1272|consen  245 ASIRTG--------------------------AGRTDVMKQNPYNAVIHLGHSN-GTVSLWSPNSKEPLVKILCHRGPVS  297 (545)
T ss_pred             HHHHcc--------------------------CCccchhhcCCccceEEEcCCC-ceEEecCCCCcchHHHHHhcCCCcc
Confidence            665554                          2677888888988778788777 89999999887754 5788999999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      ++++.++|+++++.+.|+.++|||+++...........+...+++|..|- ||.+.+....+|.
T Consensus       298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LALSYGDHVQIWK  360 (545)
T ss_pred             eEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccc-eeeecCCeeeeeh
Confidence            99999999999999999999999999877532222245677888887653 4444344344443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=4.2e-11  Score=104.59  Aligned_cols=191  Identities=13%  Similarity=0.122  Sum_probs=137.5

Q ss_pred             cCCCEEEEEECCCeEEEEEccCCCCCceeEecC--CCCCCeeEEEEe------e-------------CCCeEEEEec-CC
Q 018806          109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWR------P-------------NGGRSLSVGC-KG  166 (350)
Q Consensus       109 p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~s------p-------------~~~~l~~~~~-d~  166 (350)
                      |-+.++|....||.++||+...+  +....+..  .-.+...+..|.      |             .+..+++-|. .|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            45678999999999999998643  22222211  123455555552      1             1133444444 58


Q ss_pred             cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC
Q 018806          167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL  246 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~  246 (350)
                      .|.+|++..++-...+.+                       ..| .+.|.++.++.+-..|.+++.| +.+..|+...+.
T Consensus        81 ~v~~ys~~~g~it~~~st-----------------------~~h-~~~v~~~~~~~~~~ciyS~~ad-~~v~~~~~~~~~  135 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLST-----------------------DKH-YGNVNEILDAQRLGCIYSVGAD-LKVVYILEKEKV  135 (541)
T ss_pred             cEEEEEecCCeEEEEEec-----------------------CCC-CCcceeeecccccCceEecCCc-eeEEEEecccce
Confidence            888888874433222221                       234 5799999999999999999999 699999999887


Q ss_pred             ceeeee-cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCC-----CCEEEEEEC--CC
Q 018806          247 GTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE-----GRMILLAFA--GS  317 (350)
Q Consensus       247 ~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~-----g~~l~~~~~--~~  317 (350)
                      ...+.. .+..+.+++.+|||..+++++  +.|++||+++++. ..+.+|.++|..++|--+     |.+++++..  ..
T Consensus       136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~  213 (541)
T KOG4547|consen  136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG  213 (541)
T ss_pred             eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence            766554 456788999999999999886  7899999999998 678899999999999887     888887653  33


Q ss_pred             eEEEEEEeCCC
Q 018806          318 LTLGSIHFASK  328 (350)
Q Consensus       318 ~~~~~~~~~~~  328 (350)
                      +.+|.++...+
T Consensus       214 i~~w~v~~~~k  224 (541)
T KOG4547|consen  214 ITVWVVEKEDK  224 (541)
T ss_pred             eeEEEEEcccc
Confidence            55666665444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=1e-11  Score=115.12  Aligned_cols=186  Identities=15%  Similarity=0.138  Sum_probs=130.8

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC-CCeEEEEecCCcEEEEecCCCCCCce
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      .-+.|.....+|++++.-..|+|||.+.  ......+..+....|+++.-+-. |+.++++-.||.|++||.+.......
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~--E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHK--EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEeccc--ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence            3456777666777777788999999963  34444444455667777765443 45666666689999999985433211


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCC-CceeeEEECCCCCe-EEEEEeCCCeEEEEeCCCCCcee---eeecC--
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNG-EQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP---IRRGF--  254 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~-l~~~~~d~g~i~iwd~~~~~~~~---~~~~~--  254 (350)
                                            +...+.|+. .+|..+.+.+.|-. |++++.+ |.|++||++......   +..|-  
T Consensus      1247 ----------------------v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~-G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1247 ----------------------VCVYREHNDVEPIVHLSLQRQGLGELVSGSQD-GDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred             ----------------------ceeecccCCcccceeEEeecCCCcceeeeccC-CeEEEEecccCcccccceeeecccc
Confidence                                  233444441 23899999987654 9999999 899999999843222   22222  


Q ss_pred             C-CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-------cCCCCeEEEEEcCCCCEEEEEE
Q 018806          255 G-GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       255 ~-~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      + ..+++..+++...+|+|+. +.|+||++...+...+.       ...+.+.+++|+|.--+|++|.
T Consensus      1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             CccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence            3 4899999999999999998 99999999876653322       2345679999999888888774

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.40  E-value=1.5e-10  Score=101.41  Aligned_cols=218  Identities=17%  Similarity=0.261  Sum_probs=126.9

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCce
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS  181 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~  181 (350)
                      ..+.|+|||+++++++.||.|.++|+..  .+....+..  .....++++++||++++++.. .+.+.++|..+.+....
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~--~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~  115 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLAT--GKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT  115 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTS--SSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCc--ccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence            3467899999999999999999999954  565566543  445789999999988887776 59999999986655555


Q ss_pred             eeccccc------ccceecCCCCCc-e----------EEee----------eccCCCCCceeeEEECCCCCeEEEEEeCC
Q 018806          182 VRSGAAS------FLGALSRGPGTR-W----------TLVD----------FLRSQNGEQITALSWGPDGRYLASASYES  234 (350)
Q Consensus       182 ~~~~~~~------~~~~~~~~~~~~-~----------~~~~----------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  234 (350)
                      +......      ....+..++... |          -+.+          .+.  .........|+|++++++.+...+
T Consensus       116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCcccceeeeccccc
Confidence            5433211      111122222211 1          1111          111  123567889999999987765443


Q ss_pred             CeEEEEeCCCCCceeee-------------------------------------------------------ecCCCeEE
Q 018806          235 SSFTIWDVAQGLGTPIR-------------------------------------------------------RGFGGLSI  259 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~-------------------------------------------------------~~~~~v~~  259 (350)
                      ..|-++|.++++.....                                                       ...+.-.-
T Consensus       194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glF  273 (369)
T PF02239_consen  194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLF  273 (369)
T ss_dssp             TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred             ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcce
Confidence            58888887766221110                                                       00111144


Q ss_pred             EEEcCCCCEEEEE----ecCCeEEEEeCCCCcee-ccc-cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          260 LKWSPTGDYFFAA----KFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       260 ~~~sp~g~~l~~~----~~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                      +..+|+++++.+.    ...++|.++|.++.+.. .+. .....+..+.|+++|+++.++. +....+..++-.
T Consensus       274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            6678999999877    44579999999998763 332 2233589999999999998887 333355555543

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=1.2e-09  Score=90.52  Aligned_cols=205  Identities=15%  Similarity=0.189  Sum_probs=139.1

Q ss_pred             ccCeeEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCceeE-ecCCCCCC----------eeEEEEeeCCCeEEEEecC-
Q 018806           99 EVDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACI-LTSDSQRD----------VKVLEWRPNGGRSLSVGCK-  165 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~~~~-~~~~~~~~----------v~~~~~sp~~~~l~~~~~d-  165 (350)
                      +.+-.-++++++|++|+++.. .|.|.++.+... |..... -...|.+.          +....+.|+++.+++..-. 
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            445588999999999999875 688999988543 322211 11234444          8899999998787777664 


Q ss_pred             CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC-
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-  244 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~-  244 (350)
                      ..|.+|++. .+........                    .+  ......+.|.|+|++++.+..++-+++|.+|..+. 
T Consensus       167 Dri~~y~~~-dg~L~~~~~~--------------------~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         167 DRIFLYDLD-DGKLTPADPA--------------------EV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             ceEEEEEcc-cCcccccccc--------------------cc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            889999998 3332222111                    01  12356789999999999988887667999999887 


Q ss_pred             -CCceeeee---------cCCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCC--Ccee---ccccCCCCeEEEEEcCCCC
Q 018806          245 -GLGTPIRR---------GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTSE---PWSSTSGFVTGATWDPEGR  308 (350)
Q Consensus       245 -~~~~~~~~---------~~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~--~~~~---~~~~~~~~v~~~~~s~~g~  308 (350)
                       ++...++.         ...+...+.+++||++|.++.. ...|.+|.+..  ++..   ....+........|++.|+
T Consensus       224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~  303 (346)
T COG2706         224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR  303 (346)
T ss_pred             CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC
Confidence             33333321         2356778899999999987754 34788887653  4432   2223444578899999999


Q ss_pred             EEEEEECCCeEEEEEEeCC
Q 018806          309 MILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~  327 (350)
                      +|+++..++..+.......
T Consensus       304 ~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         304 FLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEEEccCCCcEEEEEEcC
Confidence            9999984443444444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.38  E-value=1.7e-11  Score=108.55  Aligned_cols=195  Identities=16%  Similarity=0.182  Sum_probs=128.5

Q ss_pred             ccchhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCce--------eEec--
Q 018806           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA--------CILT--  140 (350)
Q Consensus        71 ~~~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~--------~~~~--  140 (350)
                      ..++.+|.||.+.                  |++++|+.||+++|+|+.|+.+.+|.... +|...        +..+  
T Consensus        43 G~llqtLKgHKDt------------------VycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP  103 (1081)
T KOG1538|consen   43 GTLLQPLKGHKDT------------------VYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNP  103 (1081)
T ss_pred             cccccccccccce------------------EEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCc
Confidence            4556777777655                  99999999999999999999999998642 11100        0000  


Q ss_pred             -------------------------CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeec-ccccccceec
Q 018806          141 -------------------------SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS-GAASFLGALS  194 (350)
Q Consensus       141 -------------------------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~  194 (350)
                                               ......|.+++|..||+.++.+-.+|+|.|-+-........-.+ +..+++.++.
T Consensus       104 ~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~  183 (1081)
T KOG1538|consen  104 ITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSIC  183 (1081)
T ss_pred             hHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEE
Confidence                                     01123467778888877777777789988876542222222222 2345555555


Q ss_pred             CCCCCc-----------eE---EeeeccCCC-------CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec
Q 018806          195 RGPGTR-----------WT---LVDFLRSQN-------GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       195 ~~~~~~-----------~~---~~~~~~~~~-------~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~  253 (350)
                      +++...           |.   ...++.|..       +-...++++.++|.+++.|+.| +.+.+|--+.-..-.+-..
T Consensus       184 ~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd-k~L~~fTR~GvrLGTvg~~  262 (1081)
T KOG1538|consen  184 WNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSD-KQLSLFTRDGVRLGTVGEQ  262 (1081)
T ss_pred             ecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCC-CceEEEeecCeEEeecccc
Confidence            554322           11   111222211       1245688899999999999999 5999986543222233335


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~  285 (350)
                      +.+|+.++..|+++.++.|+.||+|.-|++-.
T Consensus       263 D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  263 DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            68899999999999999999999999998753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=1.2e-09  Score=95.74  Aligned_cols=213  Identities=15%  Similarity=0.227  Sum_probs=137.2

Q ss_pred             CeeEEEEecCCCEEEEEEC----CCeEEEEEccCCCCCceeEecCC-CCCCeeEEEEeeCCCeEEEEec-CCcEEEEecC
Q 018806          101 DLQGVSWHQHKHIVAFISG----STQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~----d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~  174 (350)
                      ....++++|++++|.++..    ++.|..|.++..++.....-... .......++++|+++.++++.. ++.+.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            4677899999999998876    57999999875433322221111 3345667999999888888876 6999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeec-cCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC--cee--
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFL-RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTP--  249 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~--~~~--  249 (350)
                      ..+......... ...+            ...- .........++.|+|+|+++++.......|.+|++....  ...  
T Consensus       118 ~~g~l~~~~~~~-~~~g------------~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~  184 (345)
T PF10282_consen  118 DDGSLGEVVQTV-RHEG------------SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD  184 (345)
T ss_dssp             TTSEEEEEEEEE-ESEE------------EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred             CCcccceeeeec-ccCC------------CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence            654433321100 0000            0000 001124678999999999998876544589999998765  322  


Q ss_pred             -e-eecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCC--CCceeccc---------cCCCCeEEEEEcCCCCEEEEEEC
Q 018806          250 -I-RRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEPWS---------STSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       250 -~-~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~--~~~~~~~~---------~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                       + .......+.++|+|+|+++++.. .+++|.++++.  +++.....         ........++++|||++|+++..
T Consensus       185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred             ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence             1 12346789999999999986665 47889999988  44432111         11225789999999999999986


Q ss_pred             CCeEEEEEEeC
Q 018806          316 GSLTLGSIHFA  326 (350)
Q Consensus       316 ~~~~~~~~~~~  326 (350)
                      +...|..+++.
T Consensus       265 ~~~sI~vf~~d  275 (345)
T PF10282_consen  265 GSNSISVFDLD  275 (345)
T ss_dssp             TTTEEEEEEEC
T ss_pred             cCCEEEEEEEe
Confidence            66666666663

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=6.6e-11  Score=98.41  Aligned_cols=194  Identities=11%  Similarity=0.091  Sum_probs=139.0

Q ss_pred             CEEEEEECCCeEEEEEccCCC--CCceeEecCCCCCCeeEEEEeeCCCeEEEEec-C--CcEEEEecCCCCCCceeeccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSE--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPSYPGNAASVRSGA  186 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~~~~~~~~~~~~~~  186 (350)
                      ..|++|-.+|.+.+|....+.  ......+  .....+..+.-++....+++.|. .  ..+.|||++..   .++...+
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aK  190 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAK  190 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeecc
Confidence            356778899999999986433  2222333  23356788888887777777555 5  78999999854   2222221


Q ss_pred             ccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCCCcee--eeecCCCeEEEEE
Q 018806          187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKW  262 (350)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~~~~~--~~~~~~~v~~~~~  262 (350)
                      ..+.              +.+.-.-+-+++++.|-+.  ...|++++.- +.+++||.+.+....  +.-...+++++..
T Consensus       191 Nvpn--------------D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~-hqvR~YDt~~qRRPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  191 NVPN--------------DRLGLRVPVWITDIRFLEGSPNYKFATITRY-HQVRLYDTRHQRRPVAQFDFLENPISSTGL  255 (412)
T ss_pred             CCCC--------------ccccceeeeeeccceecCCCCCceEEEEecc-eeEEEecCcccCcceeEeccccCcceeeee
Confidence            1110              0111111346788999887  7899999998 699999999665432  2224688999999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCcee--ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          263 SPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       263 sp~g~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      .|.|++|++|...+.+..||++.++..  .+.+..+.|.++..+|.+++|++++ |.-.+|++++.
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            999999999999999999999999983  3678889999999999999999886 54455555544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1.4e-10  Score=94.86  Aligned_cols=161  Identities=15%  Similarity=0.230  Sum_probs=115.3

Q ss_pred             CeeEEEEec--CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCC-CCeeEEEEeeCCCeEEEEec-----CCcEEEEe
Q 018806          101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGC-----KGGICIWA  172 (350)
Q Consensus       101 ~V~~v~~sp--~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd  172 (350)
                      .+..+.|..  ..+.+.+|+.||+|++||+............ ++. .+..+++-.-. ..++++|.     +-.|.+||
T Consensus        72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwD  149 (376)
T KOG1188|consen   72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTPFICLDLNCK-KNIIACGTELTRSDASVVLWD  149 (376)
T ss_pred             cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCcceEeeccCc-CCeEEeccccccCceEEEEEE
Confidence            356677765  4578889999999999999764444333332 343 45666666545 55666665     36789999


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCc----
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG----  247 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~----  247 (350)
                      ++.....  +                     -.....|+ ..|+++.|+|. ...|++|+.| |-|.+||++....    
T Consensus       150 vR~~qq~--l---------------------~~~~eSH~-DDVT~lrFHP~~pnlLlSGSvD-GLvnlfD~~~d~EeDaL  204 (376)
T KOG1188|consen  150 VRSEQQL--L---------------------RQLNESHN-DDVTQLRFHPSDPNLLLSGSVD-GLVNLFDTKKDNEEDAL  204 (376)
T ss_pred             eccccch--h---------------------hhhhhhcc-CcceeEEecCCCCCeEEeeccc-ceEEeeecCCCcchhhH
Confidence            9854431  1                     11134565 69999999995 5678899999 8999999986532    


Q ss_pred             eeeeecCCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCce
Q 018806          248 TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       248 ~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      .....+...|.++.|..++ +.|.+-+...+.++|+++.+..
T Consensus       205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            2344566779999999887 4578888899999999998875

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=5e-11  Score=97.63  Aligned_cols=234  Identities=15%  Similarity=0.178  Sum_probs=148.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCC-CC-ceeEecCCC------------CCCeeEEEEeeCCC--eEEEEe
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-GK-DACILTSDS------------QRDVKVLEWRPNGG--RSLSVG  163 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~-~~-~~~~~~~~~------------~~~v~~~~~sp~~~--~l~~~~  163 (350)
                      .-+.+|.|...|.+||+|..+|.|-++.-+... +. .....++.|            ...|..++|.++++  .++.++
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            348999999999999999999999988754221 11 011222223            23688999988754  577778


Q ss_pred             cCCcEEEEecCCCCCCcee----ecccccccceecC---CCCC---ceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC
Q 018806          164 CKGGICIWAPSYPGNAASV----RSGAASFLGALSR---GPGT---RWTLVDFLRSQNGEQITALSWGPDGRYLASASYE  233 (350)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  233 (350)
                      .|.+|++|.+........-    ..+....+..+..   .+-+   ...+.+.+...+.--|.+++++.|++.++++.. 
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd-  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD-  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc-
Confidence            8999999999744332200    0011111111111   1111   112333343333467899999999999988743 


Q ss_pred             CCeEEEEeCCCCCc-e---eeeecC-----CCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCce----eccc-------
Q 018806          234 SSSFTIWDVAQGLG-T---PIRRGF-----GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS----EPWS-------  292 (350)
Q Consensus       234 ~g~i~iwd~~~~~~-~---~~~~~~-----~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~----~~~~-------  292 (350)
                       -.|.+|++.-... .   -+..+.     .-|++..|+|. ...++..+..|+|++-|++....    ..+.       
T Consensus       185 -LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  185 -LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             -eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence             3899999874322 1   122222     34788899995 56778888899999999985332    0111       


Q ss_pred             ------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC-CCcee
Q 018806          293 ------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAH  335 (350)
Q Consensus       293 ------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~  335 (350)
                            .--..|..+.|+++|++|++-.--...+|++.+..++. ++..|
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeeh
Confidence                  12346889999999999998765667777777777665 33344

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.35  E-value=4.3e-10  Score=98.56  Aligned_cols=187  Identities=19%  Similarity=0.242  Sum_probs=124.1

Q ss_pred             CEEE-EEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccccccc
Q 018806          112 HIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       112 ~~la-~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      ++++ +-..++.+.+.|..+  .+....+..+ ...-..+.|+|||+++++++.|+.|.++|+...+....+..+     
T Consensus         6 ~l~~V~~~~~~~v~viD~~t--~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-----   77 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT--NKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-----   77 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT---SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-----
T ss_pred             cEEEEEecCCCEEEEEECCC--CeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-----
Confidence            4444 345689999999853  5555555422 223345789999998888888999999999966654444433     


Q ss_pred             ceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec--------CCCeEEEEE
Q 018806          191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG--------FGGLSILKW  262 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~--------~~~v~~~~~  262 (350)
                                            ....++++|+||++++++....+.+.++|.++.+.......        ...+..+..
T Consensus        78 ----------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~  135 (369)
T PF02239_consen   78 ----------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA  135 (369)
T ss_dssp             ----------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE
T ss_pred             ----------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe
Confidence                                  46788999999999998887657999999999876653321        235677878


Q ss_pred             cCCCCEEEE-EecCCeEEEEeCCCCcee--ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          263 SPTGDYFFA-AKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       263 sp~g~~l~~-~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      +|....++. .-+.+.|.+.|....+..  .............|+|+|++++++...+..+..++....
T Consensus       136 s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  136 SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             -SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence            888885554 455588999998776542  334455677889999999999988766667777776654

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.34  E-value=1.4e-09  Score=88.39  Aligned_cols=158  Identities=16%  Similarity=0.266  Sum_probs=110.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-CCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~  178 (350)
                      +|.+|.++++  +|++. .++.|.||.+..+ .+....+.. .....+.+++-+.+...|+.-|.. |.|+|-|+.....
T Consensus        96 ~I~~V~l~r~--riVvv-l~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~  171 (346)
T KOG2111|consen   96 EIKAVKLRRD--RIVVV-LENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP  171 (346)
T ss_pred             ceeeEEEcCC--eEEEE-ecCeEEEEEcCCC-hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence            6888888765  45443 5678999998632 333333322 224445555544443334444544 9999999973322


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeec--CC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRG--FG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~--~~  255 (350)
                      -.                       -..+..|. +.|.+++.+.+|..+|+++..+--|+|||..+|.... +..+  ..
T Consensus       172 ~~-----------------------p~~I~AH~-s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A  227 (346)
T KOG2111|consen  172 NA-----------------------PSIINAHD-SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA  227 (346)
T ss_pred             CC-----------------------ceEEEccc-CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh
Confidence            10                       12355664 8999999999999999999983248999999998654 3332  36


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTW  286 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~  286 (350)
                      .+++++|||++.+||++++.|+|+||.++..
T Consensus       228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            7999999999999999999999999988763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.34  E-value=4.7e-12  Score=114.51  Aligned_cols=214  Identities=13%  Similarity=0.210  Sum_probs=133.2

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ++.++.+.+..++|++|.|..|++|.+.  .+..+..+ .+|.+.|++++|+|-.    +++.||++++||.+.......
T Consensus       235 itdlavs~~n~~iaaaS~D~vIrvWrl~--~~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~  307 (1113)
T KOG0644|consen  235 ITDLAVSSNNTMIAAASNDKVIRVWRLP--DGAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV  307 (1113)
T ss_pred             cchhccchhhhhhhhcccCceEEEEecC--CCchHHHH-hccccceeeeccCccc----cCCCCCceEeccccccccccC
Confidence            7888888899999999999999999994  36655555 5999999999999972    666689999999982211111


Q ss_pred             ---eecccccccceecCCCCC----------ceE--EeeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCC
Q 018806          182 ---VRSGAASFLGALSRGPGT----------RWT--LVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQG  245 (350)
Q Consensus       182 ---~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~  245 (350)
                         ...........+-+....          .-.  -...+..+. ..+.-+.++.+- .+.+++-.+ -.+++|++.++
T Consensus       308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~-~~~~vwnl~~g  385 (1113)
T KOG0644|consen  308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARND-HRLCVWNLYTG  385 (1113)
T ss_pred             CCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeee-eEeeeeecccc
Confidence               000000011111110000          000  000011111 112222222222 233344445 37899999999


Q ss_pred             Ccee-eeecCCCeEEEEEcCCCCEE-EEEecCCeEEEEeCCCCceec--cccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 018806          246 LGTP-IRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLG  321 (350)
Q Consensus       246 ~~~~-~~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  321 (350)
                      .... ...|...++.+.++|-...+ .+++.||...|||+-.|...+  ..+| ..+...+||+||..++.. +..+.++
T Consensus       386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~ls-d~hgql~  463 (1113)
T KOG0644|consen  386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALS-DDHGQLY  463 (1113)
T ss_pred             hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecC-CCCCceE
Confidence            7765 44677889999999966555 578899999999998877632  3444 456677999999988754 3334555


Q ss_pred             EEEeC
Q 018806          322 SIHFA  326 (350)
Q Consensus       322 ~~~~~  326 (350)
                      .+-..
T Consensus       464 i~g~g  468 (1113)
T KOG0644|consen  464 ILGTG  468 (1113)
T ss_pred             EeccC
Confidence            55443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=4.6e-11  Score=99.45  Aligned_cols=168  Identities=12%  Similarity=0.131  Sum_probs=126.4

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  221 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  221 (350)
                      +|.+.|+++.|+.+++.|+++|.|..+++|+++.--....-.                   .+.....|+...|.+++|.
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K-------------------PI~~~~~~H~SNIF~L~F~  114 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK-------------------PIGVMEHPHRSNIFSLEFD  114 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC-------------------CceeccCccccceEEEEEc
Confidence            699999999999998888888888999999987211100000                   1222333445789999999


Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-e---ccccC
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E---PWSST  294 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~---~~~~~  294 (350)
                      ...+.++++..+ |+|..-|+.+.+.+.+..+.   +.|+.+..+|..+.|++.+.++.|.+||.+.... .   .....
T Consensus       115 ~~N~~~~SG~~~-~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  115 LENRFLYSGERW-GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             cCCeeEecCCCc-ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence            999999999999 79999999999888777665   5899999999999999999999999999987652 1   22234


Q ss_pred             CCCeEEEEEcCCCCEEEEE-E-CCCeEEEEEEeCCCC
Q 018806          295 SGFVTGATWDPEGRMILLA-F-AGSLTLGSIHFASKP  329 (350)
Q Consensus       295 ~~~v~~~~~s~~g~~l~~~-~-~~~~~~~~~~~~~~~  329 (350)
                      ......+.|+|....|+.. . .+...+|++++...+
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~  230 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP  230 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence            5567889999987665544 3 444567777766543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=3.1e-10  Score=105.51  Aligned_cols=205  Identities=15%  Similarity=0.174  Sum_probs=137.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC--CCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD--SQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      +-..+.|+|-...++++...-.|+|||++.  ++....+..+  ....|+.+.+-++  ...+++++.||.|+||+--..
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~--~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEK--GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEeccc--CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            467789999999999988778899999964  4433333221  3457899998653  356788888999999976533


Q ss_pred             C-CCceeecccccccceecCCCCCceEEeeeccCCC---CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-
Q 018806          177 G-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN---GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-  251 (350)
Q Consensus       177 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-  251 (350)
                      . ....+.+.                  |..+.++.   .+.-.-+.|.....+|++++.-. .|+|||........-. 
T Consensus      1144 ~~~~~eLVTa------------------w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r-~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1144 KWKKPELVTA------------------WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR-SIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred             ccCCceeEEe------------------eccccccCccCCCCCeeeehhhhCCeEEecCCee-EEEEEecccceeEeecc
Confidence            2 22222111                  22232221   11124467877766777776663 9999999876554322 


Q ss_pred             -ecCCCeEEEEEc-CCCCEEEEEecCCeEEEEeCCCCce----eccccCCCC--eEEEEEcCCCCE-EEEEE-CCCeEEE
Q 018806          252 -RGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGF--VTGATWDPEGRM-ILLAF-AGSLTLG  321 (350)
Q Consensus       252 -~~~~~v~~~~~s-p~g~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~--v~~~~~s~~g~~-l~~~~-~~~~~~~  321 (350)
                       +....++++.-+ +.|..|++|-.||.|++||.+....    .....|...  |..+.+.+.|-- |++++ ++++.++
T Consensus      1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred             cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence             223445555433 3478999999999999999987654    234567666  999999887754 77676 8888888


Q ss_pred             EEEeC
Q 018806          322 SIHFA  326 (350)
Q Consensus       322 ~~~~~  326 (350)
                      ++++.
T Consensus      1285 DlR~~ 1289 (1387)
T KOG1517|consen 1285 DLRMS 1289 (1387)
T ss_pred             ecccC
Confidence            88884

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.31  E-value=4.5e-10  Score=101.62  Aligned_cols=207  Identities=17%  Similarity=0.191  Sum_probs=131.9

Q ss_pred             ccCeeEEEEecCCCE--EEEEECCCeEEEEEccCCCCCceeE----ec-----CCCCCCeeEEEEeeCCCeEEEEecC-C
Q 018806           99 EVDLQGVSWHQHKHI--VAFISGSTQVIVRDYEDSEGKDACI----LT-----SDSQRDVKVLEWRPNGGRSLSVGCK-G  166 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~--la~~s~d~~i~iw~~~~~~~~~~~~----~~-----~~~~~~v~~~~~sp~~~~l~~~~~d-~  166 (350)
                      ..+|+.+.|-.+..-  +++++.||.|..|+++.-.......    ..     ......+++++|.+.....+..|++ |
T Consensus       291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G  370 (555)
T KOG1587|consen  291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG  370 (555)
T ss_pred             CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence            457999999776544  9999999999999875321100000    00     0122468999998876666666664 8


Q ss_pred             cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC-CC
Q 018806          167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-QG  245 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~-~~  245 (350)
                      .|.--+-. +.......                .+.....+..| .+.|+.+.++|-+..++.++.| .+++||... ..
T Consensus       371 ~v~~~~r~-g~~~~~~~----------------~~~~~~~~~~h-~g~v~~v~~nPF~~k~fls~gD-W~vriWs~~~~~  431 (555)
T KOG1587|consen  371 KVYKGCRK-GYTPAPEV----------------SYKGHSTFITH-IGPVYAVSRNPFYPKNFLSVGD-WTVRIWSEDVIA  431 (555)
T ss_pred             EEEEEecc-CCcccccc----------------ccccccccccc-CcceEeeecCCCccceeeeecc-ceeEeccccCCC
Confidence            87653322 11111000                00112223444 3799999999987766666567 599999877 33


Q ss_pred             Cce-eeeecCCCeEEEEEcCCCCE-EEEEecCCeEEEEeCCCCceec---cccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 018806          246 LGT-PIRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTL  320 (350)
Q Consensus       246 ~~~-~~~~~~~~v~~~~~sp~g~~-l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  320 (350)
                      ... ....+...+.+++|||...- ++++..||.+.+||+......+   ...+......+.|+++|+.|++|..+ +.+
T Consensus       432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~-G~~  510 (555)
T KOG1587|consen  432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN-GTT  510 (555)
T ss_pred             CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC-CcE
Confidence            333 23345566999999998654 5777889999999997665532   22335566788999999999988633 234


Q ss_pred             EEEEe
Q 018806          321 GSIHF  325 (350)
Q Consensus       321 ~~~~~  325 (350)
                      ..+++
T Consensus       511 ~~~~l  515 (555)
T KOG1587|consen  511 HILKL  515 (555)
T ss_pred             EEEEc
Confidence            44444

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=3.3e-09  Score=94.70  Aligned_cols=173  Identities=10%  Similarity=0.027  Sum_probs=112.3

Q ss_pred             eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEecC---CcEEEEecCCCCCCceeecccccccceecCCC
Q 018806          122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGP  197 (350)
Q Consensus       122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  197 (350)
                      .|.+-|.+   +.....+..+  +.+....|+|||++ +++.+.+   ..|+++|+..+. ...+..             
T Consensus       170 ~l~~~d~d---g~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~~lt~-------------  230 (419)
T PRK04043        170 NIVLADYT---LTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KEKIAS-------------  230 (419)
T ss_pred             eEEEECCC---CCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EEEEec-------------
Confidence            44454543   4444444433  37889999999986 5544443   457777776322 222111             


Q ss_pred             CCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC
Q 018806          198 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  275 (350)
Q Consensus       198 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  275 (350)
                                  . .+......|+|||+.|+.....+  ..|+++|+.++....+..+........|+|||+.|+..+..
T Consensus       231 ------------~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr  297 (419)
T PRK04043        231 ------------S-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDR  297 (419)
T ss_pred             ------------C-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECC
Confidence                        1 24556788999999887654322  37888899888766665555444567899999988776542


Q ss_pred             -C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCC--------eEEEEEEeCCC
Q 018806          276 -G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASK  328 (350)
Q Consensus       276 -~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------~~~~~~~~~~~  328 (350)
                       +  .|+++|+.+++..++......  ...|||||++|+......        ..++.+++...
T Consensus       298 ~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        298 LGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             CCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence             2  788999998888655433222  358999999999887322        46777776543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=2.1e-10  Score=95.51  Aligned_cols=181  Identities=10%  Similarity=0.064  Sum_probs=131.0

Q ss_pred             ccCeeEEEEecCC-CEEEEEECC--CeEEEEEccCCCCCceeEecCC--------CCCCeeEEEEeeC--CCeEEEEecC
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGS--TQVIVRDYEDSEGKDACILTSD--------SQRDVKVLEWRPN--GGRSLSVGCK  165 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d--~~i~iw~~~~~~~~~~~~~~~~--------~~~~v~~~~~sp~--~~~l~~~~~d  165 (350)
                      +..+..+.-++.- ..+|+|+..  ..+.|||++.  .+.+-.-..-        -.-.++++.|-+.  ...++++..-
T Consensus       148 g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~--~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~  225 (412)
T KOG3881|consen  148 GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ--SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY  225 (412)
T ss_pred             CCceeeeccCCCCCceEecCchhcccceeeeeccc--ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc
Confidence            4566777666654 455668888  8899999964  2222211110        1124678888766  5778888888


Q ss_pred             CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG  245 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~  245 (350)
                      +.+++||...+..+..-..                        -. ...++++...|+|+.|+++... |.+..||++.+
T Consensus       226 hqvR~YDt~~qRRPV~~fd------------------------~~-E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~  279 (412)
T KOG3881|consen  226 HQVRLYDTRHQRRPVAQFD------------------------FL-ENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGG  279 (412)
T ss_pred             eeEEEecCcccCcceeEec------------------------cc-cCcceeeeecCCCcEEEEeccc-chhheecccCc
Confidence            9999999985554422111                        11 3589999999999999999888 79999999998


Q ss_pred             Ccee--eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCC
Q 018806          246 LGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       246 ~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g  307 (350)
                      +..-  +.+-.+.++++..+|.++++++++-|+.|+|+|+++.+...-..-...++.+.+.++-
T Consensus       280 kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  280 KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            7653  3445688999999999999999999999999999997764433444566777776543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.28  E-value=8.4e-10  Score=94.34  Aligned_cols=171  Identities=15%  Similarity=0.265  Sum_probs=132.5

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC-cEEEEecCCCCCCceeeccccc
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAAS  188 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~  188 (350)
                      +|.++|..|. |...|.+...  +   ..+..+|.+.|.-..+.-+++.++.+..|| .+-|+|.+.. ..+.       
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~--~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-e~kr-------  396 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWD--G---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-EVKR-------  396 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCC--C---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-eEEE-------
Confidence            6788888765 4566766531  2   333347888899999998888788888886 8999998832 2222       


Q ss_pred             ccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-CCCeEEEEEcCCCC
Q 018806          189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGD  267 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~g~  267 (350)
                                        +...- +.|.++..+|+|++++.+... ..+.+.|+.++....+-.. .+-|..+.|+|+++
T Consensus       397 ------------------~e~~l-g~I~av~vs~dGK~~vvaNdr-~el~vididngnv~~idkS~~~lItdf~~~~nsr  456 (668)
T COG4946         397 ------------------IEKDL-GNIEAVKVSPDGKKVVVANDR-FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR  456 (668)
T ss_pred             ------------------eeCCc-cceEEEEEcCCCcEEEEEcCc-eEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence                              22222 689999999999999988777 7999999999987665544 46689999999999


Q ss_pred             EEEEEecCC----eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          268 YFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       268 ~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ++|.+--+|    .|+++|+.+++........+.-.+.+|.|||++|..-+
T Consensus       457 ~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         457 WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            999886665    79999999999876666666677889999999998754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.25  E-value=1.6e-09  Score=102.40  Aligned_cols=207  Identities=13%  Similarity=0.085  Sum_probs=134.6

Q ss_pred             cCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCC---ceeEecC-CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGK---DACILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       100 ~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~---~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      ..|..++.++ ++.++++||.||+|++|+...-.+.   .....+. .....+..+...+.+..+++++.||.|++.+++
T Consensus      1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred             ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence            3566777765 4599999999999999998532221   2222222 256789999999998999999889999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeE-EECCC-CC-eEEEEEeCCCeEEEEeCCCCCceeee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL-SWGPD-GR-YLASASYESSSFTIWDVAQGLGTPIR  251 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~-g~-~l~~~~~d~g~i~iwd~~~~~~~~~~  251 (350)
                      ..........                  +......+..+.+.++ +|... +. .++++... +.|..||++........
T Consensus      1129 ~~~~~~~~~~------------------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~-~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1129 HYNVSKRVAT------------------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL-SRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             ccccccceee------------------eeecccccCCCceEEeecccccccceeEEEEEec-cceEEecchhhhhHHhh
Confidence            4211111000                  1111122222344333 34332 23 57777777 69999999987654333


Q ss_pred             ---ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec--cccCCCCeEEEEEcCCC---CEEEEEEC-CCeEEEE
Q 018806          252 ---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEG---RMILLAFA-GSLTLGS  322 (350)
Q Consensus       252 ---~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g---~~l~~~~~-~~~~~~~  322 (350)
                         ...+.|++++.+|.+.|++.|...|.+-+||++-+....  ...+..++..+..+|-.   ...++++. +...+-.
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence               235889999999999999999999999999999877632  22444667777666533   45555543 3344444


Q ss_pred             EEe
Q 018806          323 IHF  325 (350)
Q Consensus       323 ~~~  325 (350)
                      |.+
T Consensus      1270 wn~ 1272 (1431)
T KOG1240|consen 1270 WNM 1272 (1431)
T ss_pred             eec
Confidence            444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=1.2e-09  Score=95.51  Aligned_cols=93  Identities=11%  Similarity=0.148  Sum_probs=76.2

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-------ecC-----CCeEEEEEcCCCCEEEEEecCCeEEE
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-------RGF-----GGLSILKWSPTGDYFFAAKFDGTFYL  280 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-------~~~-----~~v~~~~~sp~g~~l~~~~~d~~v~i  280 (350)
                      +.++++..++-...|++|+.+ |.|..||.+........       .+.     ..|+++.|+-+|-.+++|..+|.|.|
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~-g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i  254 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTED-GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI  254 (703)
T ss_pred             ccceeeeecCccceEEecccC-ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence            689999999998899999988 79999999887543322       122     23899999999999999999999999


Q ss_pred             EeCCCCceeccccC--CCCeEEEEEcCC
Q 018806          281 WETNTWTSEPWSST--SGFVTGATWDPE  306 (350)
Q Consensus       281 wd~~~~~~~~~~~~--~~~v~~~~~s~~  306 (350)
                      ||+++.+..-...|  .-+|..+.|.+.
T Consensus       255 yDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  255 YDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             EEcccCCceeecccCCccceeeeccccc
Confidence            99999988666655  447888999775

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.21  E-value=2.3e-10  Score=106.17  Aligned_cols=154  Identities=13%  Similarity=0.062  Sum_probs=124.8

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ..-+.++++.-++++|+.-+.|.+|++.. +... . ...+|.+.|.++.|+.||.++++++.|+++++|+++..+... 
T Consensus       136 ~~~~g~s~~~~~i~~gsv~~~iivW~~~~-dn~p-~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-  211 (967)
T KOG0974|consen  136 SLIIGDSAEELYIASGSVFGEIIVWKPHE-DNKP-I-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-  211 (967)
T ss_pred             EEEEeccCcEEEEEeccccccEEEEeccc-cCCc-c-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-
Confidence            34455677788999999999999999962 2222 2 335899999999999999999999999999999999554432 


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC-CCeEEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSIL  260 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~-~~v~~~  260 (350)
                                             ...-+|. .+++.+.|.|+  .+++++.| -+.++|+.+..+...+.+|. +.+..+
T Consensus       212 -----------------------~~~fgHs-aRvw~~~~~~n--~i~t~ged-ctcrvW~~~~~~l~~y~~h~g~~iw~~  264 (967)
T KOG0974|consen  212 -----------------------CTGFGHS-ARVWACCFLPN--RIITVGED-CTCRVWGVNGTQLEVYDEHSGKGIWKI  264 (967)
T ss_pred             -----------------------ccccccc-ceeEEEEeccc--eeEEeccc-eEEEEEecccceehhhhhhhhcceeEE
Confidence                                   1234665 79999999998  99999999 59999988766666666665 679999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCC
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTW  286 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~  286 (350)
                      +..++..++++++.|+.+++|++...
T Consensus       265 ~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  265 AVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999989999999999999998653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=5.5e-10  Score=91.67  Aligned_cols=207  Identities=14%  Similarity=0.201  Sum_probs=130.6

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCC-----CCeeEEEEeeCCC-eEEEEecCCcEEEE
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-----RDVKVLEWRPNGG-RSLSVGCKGGICIW  171 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~-~l~~~~~d~~v~iw  171 (350)
                      +...|.+++++.|+..++++ .|-.|.+|+++..++..-..-.+++.     .-|++..|+|.-. .++++++.|+|++-
T Consensus       163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            34579999999999988874 67789999997544332222222232     3588999999744 45566667999999


Q ss_pred             ecCCCCC----CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-C
Q 018806          172 APSYPGN----AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-L  246 (350)
Q Consensus       172 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-~  246 (350)
                      |++....    ...+... ..+.        .    ..-+..- -..|.++.|+++|+++++-..-  +|++||++-. +
T Consensus       242 DmR~~aLCd~hsKlfEep-edp~--------~----rsffsei-IsSISDvKFs~sGryilsRDyl--tvk~wD~nme~~  305 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEP-EDPS--------S----RSFFSEI-ISSISDVKFSHSGRYILSRDYL--TVKLWDLNMEAK  305 (433)
T ss_pred             echhhhhhcchhhhhccc-cCCc--------c----hhhHHHH-hhhhhceEEccCCcEEEEeccc--eeEEEeccccCC
Confidence            9982211    1111000 0000        0    0001111 1478899999999999987665  8999998532 2


Q ss_pred             c-eeeeecC------------CC---eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc------------------
Q 018806          247 G-TPIRRGF------------GG---LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS------------------  292 (350)
Q Consensus       247 ~-~~~~~~~------------~~---v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~------------------  292 (350)
                      . ....-|.            ..   -..++|+-++.++++|+..+.+++|+...|......                  
T Consensus       306 pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~  385 (433)
T KOG1354|consen  306 PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRL  385 (433)
T ss_pred             cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccccccee
Confidence            2 2222221            22   246899999999999999999999996654431110                  


Q ss_pred             ---c--------------CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 018806          293 ---S--------------TSGFVTGATWDPEGRMILLAFAGSLTLG  321 (350)
Q Consensus       293 ---~--------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~  321 (350)
                         +              ....+...+|+|....+|++..+..+++
T Consensus       386 V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif  431 (433)
T KOG1354|consen  386 VSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIF  431 (433)
T ss_pred             eecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEe
Confidence               0              0113456788998888888876555543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.19  E-value=3.1e-08  Score=85.15  Aligned_cols=217  Identities=9%  Similarity=0.022  Sum_probs=135.4

Q ss_pred             EecCCCEEEEEEC----------CCeEEEEEccCCCCCceeEecCCC------CCCeeEEEEeeCCCeEEEEe-c-CCcE
Q 018806          107 WHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVG-C-KGGI  168 (350)
Q Consensus       107 ~sp~g~~la~~s~----------d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~-~-d~~v  168 (350)
                      +||||+.|+.+..          +..|.+||..+  .+....+..+.      ...-..++++|||++++... . +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence            8999998888765          78899999954  55555554321      12334789999988887666 3 5999


Q ss_pred             EEEecCCCCCCceeeccccccc------ceecCCCCCceEEe----------ee---ccCCCCCce-eeEEECC-CCCeE
Q 018806          169 CIWAPSYPGNAASVRSGAASFL------GALSRGPGTRWTLV----------DF---LRSQNGEQI-TALSWGP-DGRYL  227 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------~~---~~~~~~~~v-~~~~~sp-~g~~l  227 (350)
                      .+.|+...+....+........      ..+..+.|+.+...          ..   +.+.. ..+ ..-.|.+ +|+++
T Consensus       131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~-~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED-EYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc-cccccCCceEcCCCcEE
Confidence            9999997766655544321111      11222333332221          11   11100 000 0113455 77666


Q ss_pred             EEEEeCCCeEEEEeCCCCCc-----eeeee--------cCCCeEEEEEcCCCCEEEEEec----------CCeEEEEeCC
Q 018806          228 ASASYESSSFTIWDVAQGLG-----TPIRR--------GFGGLSILKWSPTGDYFFAAKF----------DGTFYLWETN  284 (350)
Q Consensus       228 ~~~~~d~g~i~iwd~~~~~~-----~~~~~--------~~~~v~~~~~sp~g~~l~~~~~----------d~~v~iwd~~  284 (350)
                      ..+. . |+|.+.|+.....     ..+..        ..+...-++++|+|+.+++...          .+.|.++|..
T Consensus       210 ~vs~-e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~  287 (352)
T TIGR02658       210 WPTY-T-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK  287 (352)
T ss_pred             EEec-C-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence            6554 4 6999999654322     11111        1234455999999999877431          2579999999


Q ss_pred             CCceeccccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEEeCCC
Q 018806          285 TWTSEPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       285 ~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~  328 (350)
                      +++..........+..++++|||+ +|+++......+..++....
T Consensus       288 t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       288 TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            999876665667899999999999 77766645556666665543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=1.2e-09  Score=95.36  Aligned_cols=191  Identities=14%  Similarity=0.197  Sum_probs=131.2

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCcee
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  182 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~  182 (350)
                      ..++++.-..-|++++....|+=+++  .+|..+.-+. -..+.++++..++..+.+++++.+|.|..||.+.......+
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNL--EqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNL--EQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEc--cccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence            34555533333444444444544455  4566555442 34478999999998444444444899999999865554443


Q ss_pred             ecccccccceecCCCCCceEEeeeccCCC----CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC--CC
Q 018806          183 RSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GG  256 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~--~~  256 (350)
                      ....                   .+..|.    ...|+++.|+.+|-.+++|+.. |.+.|||+++.++..+..|.  -+
T Consensus       214 ~~~~-------------------~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-G~v~iyDLRa~~pl~~kdh~~e~p  273 (703)
T KOG2321|consen  214 DAAS-------------------SVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-GSVLIYDLRASKPLLVKDHGYELP  273 (703)
T ss_pred             eccc-------------------ccCCCccccccCcceEEEecCCceeEEeeccC-CcEEEEEcccCCceeecccCCccc
Confidence            3221                   111111    1359999999999999999999 89999999999888777765  56


Q ss_pred             eEEEEEcCCCCE-EEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          257 LSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       257 v~~~~~sp~g~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      |..+.|.+.+.. -+.......++|||-.+|+..........+..+++-|++-+++++.+.
T Consensus       274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~  334 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANES  334 (703)
T ss_pred             eeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCC
Confidence            888999876333 233334568999999999986666556679999999999999988744

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=5.9e-10  Score=95.41  Aligned_cols=221  Identities=14%  Similarity=0.191  Sum_probs=144.6

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      .-|..|.|+..|..|++++.|..|.+||+..  ++....+..+|...|....|-|.  .+.++.++.||.+++-.+...+
T Consensus       143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~--~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~  220 (559)
T KOG1334|consen  143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVS--GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG  220 (559)
T ss_pred             CccceeeecccCceeeccCccceEEeehhhc--cCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence            4699999999999999999999999999964  55556666689999988888775  3578888888988877665322


Q ss_pred             CCceeecc--cccccce-------------------------------------------------ecCCCC--------
Q 018806          178 NAASVRSG--AASFLGA-------------------------------------------------LSRGPG--------  198 (350)
Q Consensus       178 ~~~~~~~~--~~~~~~~-------------------------------------------------~~~~~~--------  198 (350)
                      ........  ...++..                                                 ++..+.        
T Consensus       221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg  300 (559)
T KOG1334|consen  221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG  300 (559)
T ss_pred             ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence            22211000  0000000                                                 000000        


Q ss_pred             --CceE---------------Eeeec-----cCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc---------
Q 018806          199 --TRWT---------------LVDFL-----RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---------  247 (350)
Q Consensus       199 --~~~~---------------~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~---------  247 (350)
                        +.+.               .++.+     .......|++++|+.++.-|+++-.|. .|+++.-.-+..         
T Consensus       301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe-~IYLF~~~~~~G~~p~~~s~~  379 (559)
T KOG1334|consen  301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE-DIYLFNKSMGDGSEPDPSSPR  379 (559)
T ss_pred             ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc-ceEEeccccccCCCCCCCcch
Confidence              0000               00111     111134689999998877777777774 899995332211         


Q ss_pred             ----ee-eeecC--CCeEEEEE-cCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 018806          248 ----TP-IRRGF--GGLSILKW-SPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSL  318 (350)
Q Consensus       248 ----~~-~~~~~--~~v~~~~~-sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~  318 (350)
                          .. ..+|.  ..|..+-| -|...++++|+.-|.|.||+-.+++...+. +....|.++.=+|--..||+++    
T Consensus       380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG----  455 (559)
T KOG1334|consen  380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG----  455 (559)
T ss_pred             hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC----
Confidence                11 33443  33666664 688999999999999999999999986544 4455889999999999999874    


Q ss_pred             EEEEEEeCC
Q 018806          319 TLGSIHFAS  327 (350)
Q Consensus       319 ~~~~~~~~~  327 (350)
                      ....+++|.
T Consensus       456 id~DVKIWT  464 (559)
T KOG1334|consen  456 IDHDVKIWT  464 (559)
T ss_pred             Cccceeeec
Confidence            455555554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=3e-09  Score=98.92  Aligned_cols=177  Identities=15%  Similarity=0.159  Sum_probs=128.1

Q ss_pred             EEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCe-----eEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDV-----KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       105 v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.-+...++.+..+..+.+||...  +.....+  .+...+     .-+-++++.-++++++.-+.+.+|+......+
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~--~~~~~~i--~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKN--SSVLSKI--QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEeccc--Cceehhc--CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            34444667888889999999999842  3333322  232221     12233555223334444699999998732221


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--eeeecCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~~~~~~~~v  257 (350)
                      .                         .+.+|. +.+.++.|+-||+++++.++|. ++++|++.+.+..  ..++|...+
T Consensus       169 ~-------------------------~l~GHe-G~iF~i~~s~dg~~i~s~SdDR-siRlW~i~s~~~~~~~~fgHsaRv  221 (967)
T KOG0974|consen  169 I-------------------------RLKGHE-GSIFSIVTSLDGRYIASVSDDR-SIRLWPIDSREVLGCTGFGHSARV  221 (967)
T ss_pred             c-------------------------eecccC-CceEEEEEccCCcEEEEEecCc-ceeeeecccccccCccccccccee
Confidence            1                         367775 8999999999999999999995 9999999998754  466889999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC-CCCeEEEEEcCCCCEEEEEE
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-SGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ..++|.|+  .+++++.|.+.++|+.+..+...+..| ...++.++..++...+++++
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g  277 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG  277 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeec
Confidence            99999999  899999999999997776655555555 34689999988777777664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=7.6e-09  Score=90.24  Aligned_cols=169  Identities=15%  Similarity=0.303  Sum_probs=111.0

Q ss_pred             eEEEEecCCCEE-EEEEC-----------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec--CCcE
Q 018806          103 QGVSWHQHKHIV-AFISG-----------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGI  168 (350)
Q Consensus       103 ~~v~~sp~g~~l-a~~s~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v  168 (350)
                      -.+.|++-|+-| +.++.           +.++++++++   +.. +.......++|.++.|+|+++.++++-.  -.++
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~---g~s-~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkv  296 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ---GES-VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKV  296 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec---Cce-EEEecCCCCCceEEEECCCCCEEEEEEecccceE
Confidence            457788877533 22221           2356666664   222 3332346789999999999887766554  3889


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--CeEEEEeCCCCC
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL  246 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--g~i~iwd~~~~~  246 (350)
                      .|+|++. .....                         +   ..++-.++-|+|.|++|+.++.++  |.|.+||+.+.+
T Consensus       297 tifnlr~-~~v~d-------------------------f---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  297 TIFNLRG-KPVFD-------------------------F---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             EEEcCCC-CEeEe-------------------------C---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence            9999872 11100                         1   124667899999999999887764  799999999865


Q ss_pred             ceeeeecCCCeEEEEEcCCCCEEEEEec------CCeEEEEeCCCCceeccccCCCCeEEEEEcCC
Q 018806          247 GTPIRRGFGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPE  306 (350)
Q Consensus       247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~  306 (350)
                      ++.... ....+-+.|+|||++++++..      |+.++||++........ ......+.+.|-|.
T Consensus       348 ~i~~~~-a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~-~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  348 LIAKFK-AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK-MFKSELLQVEWRPF  411 (566)
T ss_pred             hccccc-cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh-hhhHhHhheeeeec
Confidence            543322 234455899999999988754      68899999975443211 11115667777753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.10  E-value=4.3e-09  Score=99.57  Aligned_cols=196  Identities=14%  Similarity=0.125  Sum_probs=125.6

Q ss_pred             CCceeEecCCCCCCeeEEEEeeCC-CeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCC
Q 018806          133 GKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN  211 (350)
Q Consensus       133 ~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (350)
                      |..+..+ ..|...+..++.++.. ..+++++.||+|++|+...-..-..                  ..+...++... 
T Consensus      1038 G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------------s~rS~ltys~~- 1097 (1431)
T KOG1240|consen 1038 GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------------SARSELTYSPE- 1097 (1431)
T ss_pred             ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc------------------eeeeeEEEecc-
Confidence            5544444 4688888888887764 6677777789999999973221100                  11122222222 


Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC--ce-----eeee--cCCCeE-EEEEcC-CCC-EEEEEecCCeEE
Q 018806          212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GT-----PIRR--GFGGLS-ILKWSP-TGD-YFFAAKFDGTFY  279 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~--~~-----~~~~--~~~~v~-~~~~sp-~g~-~l~~~~~d~~v~  279 (350)
                      ...+..+...+.+..+|+++.| |.|.+.+++...  ..     .+..  ..+.+. .-+|.. .+. .|+.+..-+.|.
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~D-G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKD-GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCC-CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            3689999999999999999999 899999987621  11     1111  123333 334433 333 677888889999


Q ss_pred             EEeCCCCcee---ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCc-eeecccccceeecccC
Q 018806          280 LWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLD-AHLLPVDLPDIVSLTG  349 (350)
Q Consensus       280 iwd~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~g  349 (350)
                      .||+++....   +.....+.|++++.+|.+.+++.|. .|...+|++++.-....+. .+..+++..+...+.+
T Consensus      1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred             EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence            9999886652   3334457899999999999999998 4446677777654332221 2335555555544433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.09  E-value=3e-08  Score=79.06  Aligned_cols=186  Identities=11%  Similarity=0.074  Sum_probs=123.5

Q ss_pred             EEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccccccccee
Q 018806          114 VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL  193 (350)
Q Consensus       114 la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  193 (350)
                      +..++.|.++++.+++....+.....  . .-.+.+++.++|++.+++++....|..|.++....               
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~--~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se---------------  192 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHN--Q-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE---------------  192 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeec--c-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccc---------------
Confidence            45568999999999875332221111  1 13488999999988888888889999998873321               


Q ss_pred             cCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee------eeecCCCeEEEEEcCCCC
Q 018806          194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP------IRRGFGGLSILKWSPTGD  267 (350)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~------~~~~~~~v~~~~~sp~g~  267 (350)
                              .+.+.........-.+.+|+.....+|++..| |++.|||++......      ...|.+.+..+.|++-|.
T Consensus       193 --------y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd-g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  193 --------YIENIYEAPTSDHGFYNSFSENDLQFAVVFQD-GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             --------eeeeeEecccCCCceeeeeccCcceEEEEecC-CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence                    11121111122344678999999999999999 799999999754321      123678999999998664


Q ss_pred             --EEEEEecCCeEEEEeCCCCceeccc--------cCC-CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          268 --YFFAAKFDGTFYLWETNTWTSEPWS--------STS-GFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       268 --~l~~~~~d~~v~iwd~~~~~~~~~~--------~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                        +|+..-.-+.+++.|+++++..+..        .|. ..|..-.|+.++..+.+....  .+++|.+..+
T Consensus       264 lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~--~~ae~ni~sr  333 (344)
T KOG4532|consen  264 LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL--QGAEYNILSR  333 (344)
T ss_pred             ceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch--hhheeecccc
Confidence              3455555678999999998763321        232 237777888888777666433  3445555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.09  E-value=4.2e-08  Score=79.18  Aligned_cols=168  Identities=16%  Similarity=0.273  Sum_probs=107.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC------CCCCeeEEEEeeC------CCeEEEEecCCcE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPN------GGRSLSVGCKGGI  168 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~------~~~l~~~~~d~~v  168 (350)
                      .-+-++||||+..||.+...|+|+++|+.   +.....+...      -...|..+.|.+.      ...|++...+|.+
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~---g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM---GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecc---cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            36789999999999999999999999985   3333333222      2345666767543      1246666667777


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC----------eEE
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----------SFT  238 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g----------~i~  238 (350)
                      +-|-+..+....-...                  ..-.+..|....|.++.++|..+.|+.++....          -+.
T Consensus       122 ~Sy~vs~gt~q~y~e~------------------hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLt  183 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQEN------------------HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLT  183 (282)
T ss_pred             eeEEEEcccCCcceee------------------EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCce
Confidence            6666532211111000                  112244444568999999998888887754321          134


Q ss_pred             EEeCCCCCc---------------------ee-----ee----ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          239 IWDVAQGLG---------------------TP-----IR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       239 iwd~~~~~~---------------------~~-----~~----~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      .|.+-++.+                     ..     +.    .....|..+..||||+.||+...+|.|.+|++.+-+.
T Consensus       184 aWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  184 AWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            454332200                     00     10    1246789999999999999999999999999988766


Q ss_pred             e
Q 018806          289 E  289 (350)
Q Consensus       289 ~  289 (350)
                      +
T Consensus       264 ~  264 (282)
T PF15492_consen  264 Q  264 (282)
T ss_pred             h
Confidence            3

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=6e-08  Score=84.78  Aligned_cols=202  Identities=18%  Similarity=0.277  Sum_probs=123.6

Q ss_pred             CCCccCeeEEEEecCC--CEEEE-----EECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe-c--C
Q 018806           96 LLPEVDLQGVSWHQHK--HIVAF-----ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-C--K  165 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g--~~la~-----~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~--d  165 (350)
                      .++...++.+++||.+  ..+|+     .+.-..++||.+.............-....=-.+.|++-|.-|+... .  |
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence            3344578999999874  45555     34556899998752111100000000112234578888776555432 2  2


Q ss_pred             C---------cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEE--EEeCC
Q 018806          166 G---------GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS--ASYES  234 (350)
Q Consensus       166 ~---------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~--~~~d~  234 (350)
                      .         ++++.++.  +....+                       .+.  ..++|.++.|+|+|+.++.  |-+-.
T Consensus       242 ktn~SYYGEq~Lyll~t~--g~s~~V-----------------------~L~--k~GPVhdv~W~~s~~EF~VvyGfMPA  294 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQ--GESVSV-----------------------PLL--KEGPVHDVTWSPSGREFAVVYGFMPA  294 (566)
T ss_pred             CCCccccccceEEEEEec--CceEEE-----------------------ecC--CCCCceEEEECCCCCEEEEEEecccc
Confidence            2         35555554  221111                       122  2479999999999987664  44553


Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC---CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  311 (350)
                       ++.|||++..-  ...-..++-.++-|+|.|++|+.++.+   |.|-|||+.+.++....... .-+-+.|+|||++++
T Consensus       295 -kvtifnlr~~~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  295 -KVTIFNLRGKP--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFL  370 (566)
T ss_pred             -eEEEEcCCCCE--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEE
Confidence             89999987431  122245677789999999999877664   79999999997764433222 235579999999999


Q ss_pred             EEECC-----CeEEEEEEeCCC
Q 018806          312 LAFAG-----SLTLGSIHFASK  328 (350)
Q Consensus       312 ~~~~~-----~~~~~~~~~~~~  328 (350)
                      ++...     +..+..|++.+.
T Consensus       371 TATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  371 TATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEeccccEEecCCeEEEEecCc
Confidence            98643     234455555543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=2.8e-08  Score=89.39  Aligned_cols=225  Identities=13%  Similarity=0.182  Sum_probs=142.1

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCc------------eeEecCCCCCCeeEEEEeeCCCeEEEEecCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD------------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKG  166 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  166 (350)
                      .....|++|+....+||+|+.||.+++..+++.+...            ..+...+|...|..+.|+.+.+.+-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4468999999999999999999999999886532211            1123358999999999998877777777789


Q ss_pred             cEEEEecCCCCCCceee-cccccccceecCCCCCceEEe---------eeccCCC-------CCceeeEEECCCCCeEEE
Q 018806          167 GICIWAPSYPGNAASVR-SGAASFLGALSRGPGTRWTLV---------DFLRSQN-------GEQITALSWGPDGRYLAS  229 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-------~~~v~~~~~sp~g~~l~~  229 (350)
                      -|.+|-+-.+.-...+. ....+.+.++++..++.-.++         .++.|..       ......+.|++|.+.++.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf  173 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF  173 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence            99999886433222221 222233344444444432221         1111110       113356788888777776


Q ss_pred             EEeCCCeEEEEeCCCCC--------------------------------------------------ceeee--------
Q 018806          230 ASYESSSFTIWDVAQGL--------------------------------------------------GTPIR--------  251 (350)
Q Consensus       230 ~~~d~g~i~iwd~~~~~--------------------------------------------------~~~~~--------  251 (350)
                      +-.. |.+.+||....-                                                  ...+.        
T Consensus       174 ~~an-ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  174 KKAN-GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhcC-CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            6666 677777754320                                                  00000        


Q ss_pred             ---ecCCCeEEEEEcCCCCEEEEEecC---------CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          252 ---RGFGGLSILKWSPTGDYFFAAKFD---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       252 ---~~~~~v~~~~~sp~g~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                         ...-.+....|+++|..||+++.+         +.|++|..-..-...+......|++++|-..|-.++.+.++-++
T Consensus       253 vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiy  332 (1189)
T KOG2041|consen  253 VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIY  332 (1189)
T ss_pred             eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEecceEE
Confidence               001134567899999999888754         25666654433334556667789999999888888888776666


Q ss_pred             EEEEE
Q 018806          320 LGSIH  324 (350)
Q Consensus       320 ~~~~~  324 (350)
                      ...++
T Consensus       333 fanIR  337 (1189)
T KOG2041|consen  333 FANIR  337 (1189)
T ss_pred             EEeec
Confidence            65554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=1.9e-07  Score=92.65  Aligned_cols=211  Identities=15%  Similarity=0.118  Sum_probs=127.5

Q ss_pred             eeEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCceeEecC-CC---------------CCCeeEEEEeeCCCeEEEEe-
Q 018806          102 LQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTS-DS---------------QRDVKVLEWRPNGGRSLSVG-  163 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~~~~~~~-~~---------------~~~v~~~~~sp~~~~l~~~~-  163 (350)
                      ...++++++++.|+++.. .+.|+++|+..  +. +..+.. +.               -..-..++|+|+++.++++. 
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~--~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVN--ET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCC--CE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            578899998887766654 56788888743  21 221110 00               01235799999555555544 


Q ss_pred             cCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                      .++.|++||..... ...+...     +.. ...++..    .... .......++++|+|+.|+.+..+++.|++||+.
T Consensus       703 ~~~~I~v~d~~~g~-v~~~~G~-----G~~-~~~~g~~----~~~~-~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~  770 (1057)
T PLN02919        703 GQHQIWEYNISDGV-TRVFSGD-----GYE-RNLNGSS----GTST-SFAQPSGISLSPDLKELYIADSESSSIRALDLK  770 (1057)
T ss_pred             CCCeEEEEECCCCe-EEEEecC-----Ccc-ccCCCCc----cccc-cccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            46899999986321 1111100     000 0000000    0000 113567899999999777666655699999998


Q ss_pred             CCCceeeeec----------------------CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC-------
Q 018806          244 QGLGTPIRRG----------------------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-------  294 (350)
Q Consensus       244 ~~~~~~~~~~----------------------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------  294 (350)
                      ++....+...                      -.....++++++|+.+++-..++.|++||..++....+.+.       
T Consensus       771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d  850 (1057)
T PLN02919        771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD  850 (1057)
T ss_pred             CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC
Confidence            7653221110                      01245889999999888888899999999998876543321       


Q ss_pred             -------CCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          295 -------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       295 -------~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                             -.....++++++|+.+ ++......+..|++...
T Consensus       851 G~~~~a~l~~P~GIavd~dG~ly-VaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        851 GKALKAQLSEPAGLALGENGRLF-VADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CcccccccCCceEEEEeCCCCEE-EEECCCCEEEEEECCCC
Confidence                   1256789999999854 45545557777776543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=1.5e-09  Score=94.37  Aligned_cols=157  Identities=16%  Similarity=0.170  Sum_probs=112.2

Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      .+|.+.|+++.|+.+|..|++++.|-.+.|||.-..+....+                        -.+|. ..|.++.|
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI------------------------~TgHt-aNIFsvKF  101 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI------------------------STGHT-ANIFSVKF  101 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee------------------------ecccc-cceeEEee
Confidence            489999999999999888888888899999998733332222                        23555 78999999


Q ss_pred             CC--CCCeEEEEEeCCCeEEEEeCCCCCc----------e-eeeecCCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCC
Q 018806          221 GP--DGRYLASASYESSSFTIWDVAQGLG----------T-PIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTW  286 (350)
Q Consensus       221 sp--~g~~l~~~~~d~g~i~iwd~~~~~~----------~-~~~~~~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~  286 (350)
                      -|  +.+.++++..|. .|+++|+...+.          . ....|...|..++-.|++ ..+-++++||+++-+|++..
T Consensus       102 vP~tnnriv~sgAgDk-~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  102 VPYTNNRIVLSGAGDK-LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             eccCCCeEEEeccCcc-eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            88  467888899995 999999985321          1 122466778888999998 56789999999999999874


Q ss_pred             ceec--------cc---cCCCCeEEEEEcCCCCE-EEEEECC-CeEEEEE
Q 018806          287 TSEP--------WS---STSGFVTGATWDPEGRM-ILLAFAG-SLTLGSI  323 (350)
Q Consensus       287 ~~~~--------~~---~~~~~v~~~~~s~~g~~-l~~~~~~-~~~~~~~  323 (350)
                      ....        +.   ..--...++..+|...+ |++|+.+ -..+|+.
T Consensus       181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            3211        11   11234578899997655 5555432 2455553

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=1.8e-09  Score=105.56  Aligned_cols=172  Identities=17%  Similarity=0.295  Sum_probs=124.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|.++.=+|...+.++|+.||.+++|.+..  ++.++.........|+.+.|+.+|+.+-++..||.+.+|...    +.
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~--~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGH--GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PK 2283 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccC--CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----Cc
Confidence            578888889989999999999999999954  555555544445889999999999999999999999999987    11


Q ss_pred             eeeccc--------cccccee----cCCC-CCceEEeeec---------cCCCCCceeeEEECCCCCeEEEEEeCCCeEE
Q 018806          181 SVRSGA--------ASFLGAL----SRGP-GTRWTLVDFL---------RSQNGEQITALSWGPDGRYLASASYESSSFT  238 (350)
Q Consensus       181 ~~~~~~--------~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~  238 (350)
                      .+....        +..++++    ..++ +....+|+++         ..| ++.++++++-|..+.|++|+.+ |.|+
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H-~~gaT~l~~~P~~qllisggr~-G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH-DGGATVLAYAPKHQLLISGGRK-GEVC 2361 (2439)
T ss_pred             ceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeec-CCCceEEEEcCcceEEEecCCc-CcEE
Confidence            121111        1111110    0111 1223334333         344 4789999999999999999999 8999


Q ss_pred             EEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          239 IWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       239 iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      +||++..+.+.....        +. ...++++++..|.++||++......
T Consensus      2362 l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             EeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchh
Confidence            999987665443221        44 5678999999999999999876553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=6.7e-08  Score=83.00  Aligned_cols=192  Identities=18%  Similarity=0.226  Sum_probs=130.7

Q ss_pred             EEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-C----CC---CCeeEEE-EeeCCCeEEEEecCCcEEEEecCCC
Q 018806          106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-D----SQ---RDVKVLE-WRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       106 ~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-~----~~---~~v~~~~-~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      -.+.||+.|+. +..|.|.++|.++..-+.+..-.. .    ..   .+..-+. |++-...+++.-+.|...|.+.. .
T Consensus       273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~-~  350 (668)
T COG4946         273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPW-D  350 (668)
T ss_pred             ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCC-C
Confidence            44568888887 677889999986533222111100 0    00   1111111 44433445555555677766554 1


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG  256 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~  256 (350)
                      +..-                          -.++ .+.|.-..+.-+++-++.+..|.-.+-++|.++++...+...-+.
T Consensus       351 ~~~i--------------------------qv~~-~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~  403 (668)
T COG4946         351 GYSI--------------------------QVGK-KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGN  403 (668)
T ss_pred             CeeE--------------------------EcCC-CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccc
Confidence            1111                          1122 356888888888888888888833999999999988888888899


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      |.++..+++|++++++.....+.++|+++++..... ...+-|+.++|+|+++++|.+.-.......+++.
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly  474 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY  474 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence            999999999999999998899999999999985443 4567899999999999999987444333444433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=5.5e-08  Score=84.97  Aligned_cols=100  Identities=20%  Similarity=0.400  Sum_probs=69.6

Q ss_pred             ceeeEEECCCCCeEEEEEeC--CCeEEEEeCCCC-Ccee-eee-cCCCeEEEEEcCCCCEEEEE---ecCCeEEEEeCCC
Q 018806          214 QITALSWGPDGRYLASASYE--SSSFTIWDVAQG-LGTP-IRR-GFGGLSILKWSPTGDYFFAA---KFDGTFYLWETNT  285 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~~~~-~~~~-~~~-~~~~v~~~~~sp~g~~l~~~---~~d~~v~iwd~~~  285 (350)
                      .|...+|.|.|..+++-+.+  ..++.+|-+.+. .... +.. .......+.|+|.|++++.+   +..|.+.++|+.-
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            56688999999887765432  237888988742 2211 111 23556789999999998765   4578999999985


Q ss_pred             Cce--eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          286 WTS--EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       286 ~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ...  .....|. ..+.+.|.|.|+|+++++
T Consensus       527 a~~k~~~~~eh~-~at~veWDPtGRYvvT~s  556 (698)
T KOG2314|consen  527 ADLKDTASPEHF-AATEVEWDPTGRYVVTSS  556 (698)
T ss_pred             hhhhhccCcccc-ccccceECCCCCEEEEee
Confidence            333  2333343 467889999999999884

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.00  E-value=1.8e-08  Score=81.27  Aligned_cols=187  Identities=11%  Similarity=0.122  Sum_probs=125.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~  179 (350)
                      ..-++.|++.+..++++..+|.+.+-+.....-+... ..+.|+-.++-..|+-....+++.|+ |+.+..||++.++. 
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq-~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-  200 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQ-TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-  200 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecc-cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence            3567889999999999888999885554221111111 23579999999999866555666555 69999999984431 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCC-CceeeeecCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~-~~~~~~~~~~~v  257 (350)
                                            .++...+.|. ..|.++.-+| .+.+|++|+.|. .|++||.+.. ++..-..-.++|
T Consensus       201 ----------------------~i~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~v~GGV  256 (339)
T KOG0280|consen  201 ----------------------FIWHNSKVHT-SGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAKVGGGV  256 (339)
T ss_pred             ----------------------eeeecceeee-cceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCccccce
Confidence                                  1233345555 6888888876 578999999997 9999999964 333333345899


Q ss_pred             EEEEEcCCC--CEEEEEecCCeEEEEeCCCCcee---c---cccCCCCeEEEEEcCCCCEEEEEE
Q 018806          258 SILKWSPTG--DYFFAAKFDGTFYLWETNTWTSE---P---WSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       258 ~~~~~sp~g--~~l~~~~~d~~v~iwd~~~~~~~---~---~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +.+.++|.-  +.|+++..+| .+|.+...+...   .   ...|.+-+..-.|......|++++
T Consensus       257 WRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  257 WRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             EEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence            999999953  3345544444 677777655432   1   235556666667755555677765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.00  E-value=1.9e-08  Score=84.46  Aligned_cols=158  Identities=13%  Similarity=0.104  Sum_probs=107.9

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCC-CceeEecCCCCCCeeEEEEeeCCCeEEEEecC---CcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~  176 (350)
                      .+..+..++.+++||.+..+....++++..... ...... ..-...-+++.|..+....+.+-..   ..+.+|.... 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence            355667788999999998888877888764332 111111 1223344556665554555554443   4445555442 


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--eeeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~~~~~~  254 (350)
                      ..                         ...+-||- +.+++++|+||+++|+++..| ..|++-........  ...+|.
T Consensus       142 ~~-------------------------~~~~lGhv-Sml~dVavS~D~~~IitaDRD-EkIRvs~ypa~f~IesfclGH~  194 (390)
T KOG3914|consen  142 GR-------------------------CEPILGHV-SMLLDVAVSPDDQFIITADRD-EKIRVSRYPATFVIESFCLGHK  194 (390)
T ss_pred             cC-------------------------cchhhhhh-hhhheeeecCCCCEEEEecCC-ceEEEEecCcccchhhhccccH
Confidence            11                         12245665 789999999999999999999 59999877654433  355788


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      .-|..++.-++. .|++++.|++|++||+.+|+.
T Consensus       195 eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  195 EFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             hheeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence            889999987654 589999999999999999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=1.4e-08  Score=82.58  Aligned_cols=227  Identities=15%  Similarity=0.189  Sum_probs=142.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCce--eEecCCCC------------CCeeEEEEeeCCC--eEEEEe
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQ------------RDVKVLEWRPNGG--RSLSVG  163 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~--~~~~~~~~------------~~v~~~~~sp~~~--~l~~~~  163 (350)
                      ..|+++.|...|.+||+|...|.|.++.-+...+-..  ..-+++|.            ..|..+.|..+++  .++.++
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            3589999999999999998889999987643221110  00122332            3588899976643  577888


Q ss_pred             cCCcEEEEecCCCCCCceeecc---------cccccce-----e-cCCCCCceEEeee---c-cCCCCCceeeEEECCCC
Q 018806          164 CKGGICIWAPSYPGNAASVRSG---------AASFLGA-----L-SRGPGTRWTLVDF---L-RSQNGEQITALSWGPDG  224 (350)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~---------~~~~~~~-----~-~~~~~~~~~~~~~---~-~~~~~~~v~~~~~sp~g  224 (350)
                      .|++|++|.+... +...+...         ...+..+     + ..+....+.....   . ..| .-.+.+++|+.|.
T Consensus       107 NdktiKlWKiyek-nlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH-~yhiNSiS~NsD~  184 (460)
T COG5170         107 NDKTIKLWKIYEK-NLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH-PYHINSISFNSDK  184 (460)
T ss_pred             CCceeeeeeeecc-cchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc-eeEeeeeeecCch
Confidence            8999999998732 22222111         0001111     0 0111222222221   2 234 3578899999998


Q ss_pred             CeEEEEEeCCCeEEEEeCCCCCc----eeeeecC-----CCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCce-----e
Q 018806          225 RYLASASYESSSFTIWDVAQGLG----TPIRRGF-----GGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-----E  289 (350)
Q Consensus       225 ~~l~~~~~d~g~i~iwd~~~~~~----~~~~~~~-----~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~-----~  289 (350)
                      +.++++..  -.|.+|++.-...    .-+..|.     .-|++..|+|.. ..+...+..|.|++-|++....     .
T Consensus       185 et~lSaDd--LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLLSADD--LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heeeeccc--eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            88887643  3899999875422    1222332     347888999964 4566777899999999984322     1


Q ss_pred             c------------cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC
Q 018806          290 P------------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  330 (350)
Q Consensus       290 ~------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~  330 (350)
                      .            +......|..+.|+++|+++++-.-....+|++++...+.
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi  315 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI  315 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc
Confidence            1            1122356889999999999998766667777777766554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.96  E-value=4.3e-08  Score=87.15  Aligned_cols=197  Identities=19%  Similarity=0.284  Sum_probs=128.4

Q ss_pred             CeeEEEEecCCCEEEEEE---CC-CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEE--EEec
Q 018806          101 DLQGVSWHQHKHIVAFIS---GS-TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGIC--IWAP  173 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s---~d-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~--iwd~  173 (350)
                      .+..-.|+|+++.++..+   .. ..+.+++++.  +.......  ..+.-...+|+|||++++.+.. |+...  +.|+
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccC--Cccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            577789999998887754   22 3577888865  44333332  3445667899999999888877 55554  4455


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIR  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~  251 (350)
                      ....... +..                         . .+.-..-.|+|||++|+..+...|  .|.+++.+.+....+.
T Consensus       270 ~~~~~~~-Lt~-------------------------~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT  322 (425)
T COG0823         270 DGKNLPR-LTN-------------------------G-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT  322 (425)
T ss_pred             CCCccee-ccc-------------------------C-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence            5322111 111                         1 123347789999999999987756  5666677777665555


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEec-CCe--EEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEEEeC
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKF-DGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFA  326 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~~~~~~~~~  326 (350)
                      ...+.-....|+|||++|+..+. +|.  |.+.|+.++...+............|.++|+.++..++.  ...+..+...
T Consensus       323 ~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~  402 (425)
T COG0823         323 FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD  402 (425)
T ss_pred             ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence            55444448899999999987664 343  777777776644444444555677899999999887632  3445555444


Q ss_pred             CC
Q 018806          327 SK  328 (350)
Q Consensus       327 ~~  328 (350)
                      .+
T Consensus       403 g~  404 (425)
T COG0823         403 GR  404 (425)
T ss_pred             ce
Confidence            43

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.93  E-value=6.5e-07  Score=87.32  Aligned_cols=224  Identities=14%  Similarity=0.246  Sum_probs=137.4

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      .....|.++.+-++...|+.+..+|.|.+...+.............-+..|.+++||||++.++.+..++++.+.+-...
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            34457999999999999999999999999832211122222222235678999999999888888888888877654411


Q ss_pred             C------------CCceeecccccccceecCCCCCceE--Ee---------eeccCCCCCceeeEEECCCCCeEEEEEe-
Q 018806          177 G------------NAASVRSGAASFLGALSRGPGTRWT--LV---------DFLRSQNGEQITALSWGPDGRYLASASY-  232 (350)
Q Consensus       177 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~v~~~~~sp~g~~l~~~~~-  232 (350)
                      .            ..+.+.-+-.+..+.|..+....-.  ..         ..+. . +..-..++|-.||+++|+.+. 
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~-dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-W-DDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-c-CCCceEEEECCCCcEEEEEEEE
Confidence            1            1111111111111112111111000  00         0111 1 235578999999999998875 


Q ss_pred             --C--CCeEEEEeCCCCCceeeeecC-CCeEEEEEcCCCCEEEEEec---CCeEEEEeCCCCcee----ccccCCCCeEE
Q 018806          233 --E--SSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSE----PWSSTSGFVTG  300 (350)
Q Consensus       233 --d--~g~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~---d~~v~iwd~~~~~~~----~~~~~~~~v~~  300 (350)
                        .  ...+++|+-+ |......+.. +--.+++|-|.|++||+...   ...|.+|.-+.-+..    ++......|..
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence              2  1389999976 5443333322 33447899999999988754   346777765443332    22245668999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEE
Q 018806          301 ATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       301 ~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                      +.|++|+..|++-..+.+.+|..
T Consensus       310 l~Wn~ds~iLAv~~~~~vqLWt~  332 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDRVQLWTR  332 (928)
T ss_pred             EEECCCCCEEEEEecCCceEEEe
Confidence            99999999999987555555543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.90  E-value=1.2e-07  Score=84.25  Aligned_cols=145  Identities=21%  Similarity=0.335  Sum_probs=103.6

Q ss_pred             CCCCeeEEEEeeCCCeEEEEecC--C--cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeE
Q 018806          143 SQRDVKVLEWRPNGGRSLSVGCK--G--GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  218 (350)
Q Consensus       143 ~~~~v~~~~~sp~~~~l~~~~~d--~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (350)
                      ....+...+|+|++..+++....  +  .+.++++..+.....+.                       +    .+.-...
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------------~----~g~~~~P  243 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------------F----NGNNGAP  243 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------------c----CCccCCc
Confidence            34568888999999988877553  3  48888888554433322                       1    1344567


Q ss_pred             EECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC-C--eEEEEeCCCCceecccc
Q 018806          219 SWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G--TFYLWETNTWTSEPWSS  293 (350)
Q Consensus       219 ~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~--~v~iwd~~~~~~~~~~~  293 (350)
                      +|+|||+.|+.+...+|  .|+++|+.++....+....+.-..-.|+|||++|+..+.. |  .|+++|.+.+...++..
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~  323 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF  323 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence            99999999998876556  5667788877755555445555588999999999876553 3  68888888887755554


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE
Q 018806          294 TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       294 ~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ....-....|+|||++|+...
T Consensus       324 ~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         324 SGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             cCCCCcCccCCCCCCEEEEEe
Confidence            444444789999999999887

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.90  E-value=2.3e-07  Score=74.97  Aligned_cols=180  Identities=13%  Similarity=0.112  Sum_probs=118.0

Q ss_pred             CeeEEEEec---CCC-EEEEEECCCeEEEEEccCCCCCceeEec--CCC---CCCeeEEEEeeCCCeEEEEecCCcEEEE
Q 018806          101 DLQGVSWHQ---HKH-IVAFISGSTQVIVRDYEDSEGKDACILT--SDS---QRDVKVLEWRPNGGRSLSVGCKGGICIW  171 (350)
Q Consensus       101 ~V~~v~~sp---~g~-~la~~s~d~~i~iw~~~~~~~~~~~~~~--~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iw  171 (350)
                      .+..+.|..   +|. .++-+...|.|.++..+.....  ..+.  ...   .....++.|++.+..+++.-.+|.+.+-
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceee--eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            456666653   445 5556677899999887532111  1111  011   1124578899988888777778888854


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCCC-cee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGL-GTP  249 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~~-~~~  249 (350)
                      +.. .....                      -.+..+.|. ..++...|+... +.+++|+.| |.+..||++... ...
T Consensus       149 ~~t-~~~le----------------------~vq~wk~He-~E~Wta~f~~~~pnlvytGgDD-~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  149 YET-EMVLE----------------------KVQTWKVHE-FEAWTAKFSDKEPNLVYTGGDD-GSLSCWDIRIPKTFIW  203 (339)
T ss_pred             ecc-eeeee----------------------ecccccccc-eeeeeeecccCCCceEEecCCC-ceEEEEEecCCcceee
Confidence            443 11111                      123466665 688888887654 455666666 799999999443 222


Q ss_pred             --eeecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCC-ceeccccCCCCeEEEEEcCCC
Q 018806          250 --IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       250 --~~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~g  307 (350)
                        ...|..+|.++.-+| .+.+|++|+.|-.|++||.++. +...-..-.+.|+.+.++|.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence              334778888888776 5789999999999999999954 444333456889999999853

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.86  E-value=1e-06  Score=70.48  Aligned_cols=186  Identities=11%  Similarity=-0.010  Sum_probs=122.4

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC-CCeEEEEecCCcEEEEecCCCCCCceeeccccccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      .+||.|+..|...+|...++++..  .+...|...|+-+.=.-+ ...++.++.|.++++.+++.+.....         
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~--~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~---------  153 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHL--YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA---------  153 (344)
T ss_pred             cEEEeccccceeeeecccCcccce--eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce---------
Confidence            578999999999999987544322  221223333322211111 13466777788888888873322111         


Q ss_pred             ceecCCCCCceEEeeeccCCCC-CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--e--eeecCCCeEEEEEcCC
Q 018806          191 GALSRGPGTRWTLVDFLRSQNG-EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--P--IRRGFGGLSILKWSPT  265 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~--~~~~~~~v~~~~~sp~  265 (350)
                                        .|.. -.+.++++++|++++++.+... .|..|.+......  .  .......-.+..|+..
T Consensus       154 ------------------~h~~~~~~ns~~~snd~~~~~~Vgds~-~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  154 ------------------VHNQNLTQNSLHYSNDPSWGSSVGDSR-RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             ------------------eeccccceeeeEEcCCCceEEEecCCC-cceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence                              1111 2367899999999999998885 9999998764322  2  2223455677899999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCce------eccccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEEEeCC
Q 018806          266 GDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       266 g~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~  327 (350)
                      ...+|++..||++.|||++....      .+...|.+.+..+.|++-|.. |+.-+..-.++..+++..
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            99999999999999999987554      223468899999999986643 333344445566666543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.81  E-value=9e-08  Score=84.19  Aligned_cols=180  Identities=16%  Similarity=0.174  Sum_probs=121.1

Q ss_pred             CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCC-CCCceEEeeeccCCCCCceeeEEE----CCCCCeEEEE
Q 018806          156 GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG-PGTRWTLVDFLRSQNGEQITALSW----GPDGRYLASA  230 (350)
Q Consensus       156 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~----sp~g~~l~~~  230 (350)
                      ..+++....||.+++|+...++....+.+.     ..++.. -...|.+.-   +.......++.+    +-+-..++-|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----~~~s~t~~~~~w~L~~---~~s~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----ASLSGTCTYTKWGLSA---DYSPMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccc-----hhccCcceeEEEEEEe---ccchHHHHhHHHHhhccCCceEEEee
Confidence            345666777899999999865544333222     111110 011222111   111111222222    2233456666


Q ss_pred             EeCCCeEEEEeCCCCCceeee---ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCC
Q 018806          231 SYESSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPE  306 (350)
Q Consensus       231 ~~d~g~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~  306 (350)
                      ... |.|.+|++..++.....   .|.+.|.++.++.+-..|.+++.|..+..|+....... .+......+.+++.+||
T Consensus        77 t~~-g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   77 TPQ-GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             cCC-ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence            666 89999999999876544   36788999999999889999999999999999998874 45566778899999999


Q ss_pred             CCEEEEEECCCeEEEEEEeCCCCC--CCceeecccccceeecc
Q 018806          307 GRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSL  347 (350)
Q Consensus       307 g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~  347 (350)
                      |+.|++++   ..+..|++..+..  .+++|..||+...+..+
T Consensus       156 ~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  156 GKILLTAS---RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             CCEEEecc---ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            99999875   4556666665544  88999999998877654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=1e-06  Score=87.45  Aligned_cols=178  Identities=13%  Similarity=0.088  Sum_probs=108.3

Q ss_pred             eeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEec-------CC------CCCCeeEEEEeeCCCeEEEEec-CC
Q 018806          102 LQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILT-------SD------SQRDVKVLEWRPNGGRSLSVGC-KG  166 (350)
Q Consensus       102 V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~-------~~------~~~~v~~~~~sp~~~~l~~~~~-d~  166 (350)
                      -+.++|+| ++.++++.+.++.|++|+...  +.......       .+      .-.....++|+|+++.++++.. ++
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~--g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~  762 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISD--GVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS  762 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCC--CeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence            46899999 555666666788899999753  22111000       00      0123567999999886766665 59


Q ss_pred             cEEEEecCCCCCCceeeccc-ccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC
Q 018806          167 GICIWAPSYPGNAASVRSGA-ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG  245 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~  245 (350)
                      .|++||+..... ..+..+. ........++..+....    ... ......++++++|+.+++-..+ +.|++||..++
T Consensus       763 ~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~----~~~-l~~P~Gvavd~dG~LYVADs~N-~rIrviD~~tg  835 (1057)
T PLN02919        763 SIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGS----EVL-LQHPLGVLCAKDGQIYVADSYN-HKIKKLDPATK  835 (1057)
T ss_pred             eEEEEECCCCcE-EEEEecccccCcccccccCCCCchh----hhh-ccCCceeeEeCCCcEEEEECCC-CEEEEEECCCC
Confidence            999999874331 1111000 00000001110000000    000 1234689999999876666666 69999999887


Q ss_pred             Cceeeeec--------------CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          246 LGTPIRRG--------------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       246 ~~~~~~~~--------------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      ....+.+.              -.....++++++|+.+++-+.++.|++||+++++.
T Consensus       836 ~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        836 RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            65544321              12467899999999888888899999999998764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=3.8e-08  Score=86.03  Aligned_cols=154  Identities=15%  Similarity=0.181  Sum_probs=103.2

Q ss_pred             cCCCEEEEEECCCeEEEEEccCCC---CCceeEec-CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeec
Q 018806          109 QHKHIVAFISGSTQVIVRDYEDSE---GKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  184 (350)
Q Consensus       109 p~g~~la~~s~d~~i~iw~~~~~~---~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  184 (350)
                      .+.+-+++++.|+++++|.+....   +...++++ ..|..+|.++.|-.+-+.  .++.|+.+++||.-.+....++..
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--i~ScD~giHlWDPFigr~Laq~~d  822 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--IASCDGGIHLWDPFIGRLLAQMED  822 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce--eeeccCcceeecccccchhHhhhc
Confidence            366778899999999999986321   11223332 369999999999887333  356789999999764443332221


Q ss_pred             ccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEE-EEeCCCeEEEEeCCCCCcee---eee---cCC
Q 018806          185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLAS-ASYESSSFTIWDVAQGLGTP---IRR---GFG  255 (350)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~-~~~d~g~i~iwd~~~~~~~~---~~~---~~~  255 (350)
                      .                        ...+.+..+..-++  ...+.. ++..+ +|+++|.+.++...   +-.   ...
T Consensus       823 a------------------------pk~~a~~~ikcl~nv~~~iliAgcsaeS-TVKl~DaRsce~~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  823 A------------------------PKEGAGGNIKCLENVDRHILIAGCSAES-TVKLFDARSCEWTCELKVCNAPGPNA  877 (1034)
T ss_pred             C------------------------cccCCCceeEecccCcchheeeeccchh-hheeeecccccceeeEEeccCCCCch
Confidence            1                        11123333333333  233333 35664 99999999886532   111   234


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      -+.+++..+.|++++++-.+|.|.+.|.++|+..
T Consensus       878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             heeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence            5889999999999999999999999999999963

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.77  E-value=5.6e-06  Score=67.15  Aligned_cols=197  Identities=14%  Similarity=0.224  Sum_probs=114.7

Q ss_pred             EEEecCCCEEEEEECCCeEEEEEccCCCCC--ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCcee
Q 018806          105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  182 (350)
Q Consensus       105 v~~sp~g~~la~~s~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~  182 (350)
                      ++.+.+|+.||. -.|..|.|-...++-..  ..+.+..+....=..++||||+..++.+.+.|+|+++|+. +.....+
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVI   80 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEc
Confidence            567789998886 57777888765432222  1233333344456889999997777777778999999997 3333332


Q ss_pred             ecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC------CCeEEEEEeCCCeEEEEeCCCCC-----cee--
Q 018806          183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGL-----GTP--  249 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------g~~l~~~~~d~g~i~iwd~~~~~-----~~~--  249 (350)
                      .....                   ..+.-...|..+.|-+-      ...|++-..+ |.++-|-+..+.     ...  
T Consensus        81 ~p~~~-------------------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-G~L~Sy~vs~gt~q~y~e~hsf  140 (282)
T PF15492_consen   81 PPAMS-------------------FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-GQLRSYLVSVGTNQGYQENHSF  140 (282)
T ss_pred             Ccccc-------------------cCCccccceeeeEeeccccccccceeEEEEecc-ceeeeEEEEcccCCcceeeEEE
Confidence            22110                   00001134445545331      2245555666 677777653321     111  


Q ss_pred             -eee-cCCCeEEEEEcCCCCEEEEEec----CC-------eEEEEeCCCCce---------------------ecc----
Q 018806          250 -IRR-GFGGLSILKWSPTGDYFFAAKF----DG-------TFYLWETNTWTS---------------------EPW----  291 (350)
Q Consensus       250 -~~~-~~~~v~~~~~sp~g~~l~~~~~----d~-------~v~iwd~~~~~~---------------------~~~----  291 (350)
                       +.. ...+|.++.++|.-+.|++|+.    ++       -+..|.+-++..                     .++    
T Consensus       141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~  220 (282)
T PF15492_consen  141 SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK  220 (282)
T ss_pred             EecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee
Confidence             111 3578999999999888876643    11       255564432211                     000    


Q ss_pred             -----ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          292 -----SSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       292 -----~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                           ......|..|..||||+.|++.. ++.+.+|.+
T Consensus       221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence                 12356789999999999999886 555444443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.76  E-value=7.1e-06  Score=70.84  Aligned_cols=209  Identities=13%  Similarity=0.062  Sum_probs=114.1

Q ss_pred             hhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEE-C-CCeEEEEEccCCCCCceeEecCCCCC------CeeEEEE
Q 018806           81 ISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFIS-G-STQVIVRDYEDSEGKDACILTSDSQR------DVKVLEW  152 (350)
Q Consensus        81 ~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s-~-d~~i~iw~~~~~~~~~~~~~~~~~~~------~v~~~~~  152 (350)
                      +......+..|.+++.+.+..-..+++||||++|++.. . +..+.+.|+..  ++.+..+..+-..      .-..+..
T Consensus        86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~vy~t~e~~~~~~  163 (352)
T TIGR02658        86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYHIFPTANDTFFMH  163 (352)
T ss_pred             cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcEEEEecCCccEEE
Confidence            33444555666666666666677899999999998765 3 78899999854  4444433221111      1112223


Q ss_pred             eeCCCeEEEEec-CCcEEEEecCC--C------CCCceee-ccc------ccccceecCCCCC--ceEEeeecc------
Q 018806          153 RPNGGRSLSVGC-KGGICIWAPSY--P------GNAASVR-SGA------ASFLGALSRGPGT--RWTLVDFLR------  208 (350)
Q Consensus       153 sp~~~~l~~~~~-d~~v~iwd~~~--~------~~~~~~~-~~~------~~~~~~~~~~~~~--~~~~~~~~~------  208 (350)
                      +.||..+..... +|+...=....  .      ..+.... .+.      ...+..+..+.+.  ....+..+.      
T Consensus       164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~  243 (352)
T TIGR02658       164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKAD  243 (352)
T ss_pred             eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccccc
Confidence            344333322222 23322111110  0      0000000 000      0000001100000  001111111      


Q ss_pred             CCCCCceeeEEECCCCCeEEEEEeC---------CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCC-EEEEEe-cCCe
Q 018806          209 SQNGEQITALSWGPDGRYLASASYE---------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD-YFFAAK-FDGT  277 (350)
Q Consensus       209 ~~~~~~v~~~~~sp~g~~l~~~~~d---------~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~d~~  277 (350)
                      +-..+.+.-++++|++++++.....         .+.|.++|..+++......-...+..++++|||+ +|++.. .++.
T Consensus       244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc
Confidence            1122344559999999998875321         1389999999998877666667899999999999 777665 5788


Q ss_pred             EEEEeCCCCceecc
Q 018806          278 FYLWETNTWTSEPW  291 (350)
Q Consensus       278 v~iwd~~~~~~~~~  291 (350)
                      |.++|..+++....
T Consensus       324 VsViD~~t~k~i~~  337 (352)
T TIGR02658       324 LYIFDAETGKELSS  337 (352)
T ss_pred             EEEEECcCCeEEee
Confidence            99999999987543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.76  E-value=5.5e-07  Score=74.40  Aligned_cols=234  Identities=15%  Similarity=0.147  Sum_probs=130.4

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (350)
                      |..-++||...++.+...|.                  ..-+.+.+.|.+++||--. +.++.-..+......+++++.+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~------------------e~gv~~~s~drtvrv~lkr-ds~q~wpsI~~~mP~~~~~~~y   76 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPK------------------EEGVISVSEDRTVRVWLKR-DSGQYWPSIYHYMPSPCSAMEY   76 (404)
T ss_pred             hhhhhcCchhhhhhheeccC------------------CCCeEEccccceeeeEEec-cccccCchhhhhCCCCceEeee
Confidence            46677888888666555553                  4457788999999999743 3344444444445678999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCCceee---cccccccceecCCCCCceEEeeec---------cCC-CCCceeeEE
Q 018806          153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVR---SGAASFLGALSRGPGTRWTLVDFL---------RSQ-NGEQITALS  219 (350)
Q Consensus       153 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~v~~~~  219 (350)
                      .++..+|+.+-..|++.-+.+...-+...+.   ......+..+.++-..+|.+....         +.. .-+...-..
T Consensus        77 ~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~  156 (404)
T KOG1409|consen   77 VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET  156 (404)
T ss_pred             eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec
Confidence            9995445444445888877665221111110   111111122222222222221110         000 000000000


Q ss_pred             ECCCCCe---EEEEEeCCCeEEEEeCCCCC---ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--ecc
Q 018806          220 WGPDGRY---LASASYESSSFTIWDVAQGL---GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPW  291 (350)
Q Consensus       220 ~sp~g~~---l~~~~~d~g~i~iwd~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~  291 (350)
                      +..+-++   .+..+...|.|.+-.+....   ...+.+|.+.+.+++|.+..+.|++|..|..+-+||+-..+-  ..+
T Consensus       157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el  236 (404)
T KOG1409|consen  157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL  236 (404)
T ss_pred             cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence            0000011   11111111333333332222   223446778999999999999999999999999999966554  567


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          292 SSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       292 ~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      .+|...|..+...+--+.|.++. ++.+.+|.++.
T Consensus       237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            78888998888877777777655 44455555543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.74  E-value=6.4e-06  Score=68.73  Aligned_cols=184  Identities=13%  Similarity=0.125  Sum_probs=110.3

Q ss_pred             eeEEEEe-cCCCEEEEEECCCeEEEEEccCCCCCceeEec-CC-CCCCeeEEEEeeCCCeEEEEecCC----c--EEEEe
Q 018806          102 LQGVSWH-QHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SD-SQRDVKVLEWRPNGGRSLSVGCKG----G--ICIWA  172 (350)
Q Consensus       102 V~~v~~s-p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l~~~~~d~----~--v~iwd  172 (350)
                      ...+.+. +++.++ .+...+ +.++|+...+-....... .. .....+.+++.|+|+.+++.....    .  =.+|.
T Consensus        42 ~~G~~~~~~~g~l~-v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLY-VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEE-EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEE-EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6778888 665544 455555 556687542222222221 11 345688999999977555544321    1  23444


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-----
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----  247 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-----  247 (350)
                      +...+....+.                        .+  ......++|+|+++.|+.+....+.|..+++.....     
T Consensus       120 ~~~~~~~~~~~------------------------~~--~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~  173 (246)
T PF08450_consen  120 IDPDGKVTVVA------------------------DG--LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR  173 (246)
T ss_dssp             EETTSEEEEEE------------------------EE--ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE
T ss_pred             ECCCCeEEEEe------------------------cC--cccccceEECCcchheeecccccceeEEEeccccccceeee
Confidence            43222211111                        11  135689999999998876655547999999864322     


Q ss_pred             eeeeec-C--CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccCCCCeEEEEE-cCCCCEEEEEE
Q 018806          248 TPIRRG-F--GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATW-DPEGRMILLAF  314 (350)
Q Consensus       248 ~~~~~~-~--~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~-s~~g~~l~~~~  314 (350)
                      ..+... .  +....+++..+|++.++....+.|.++|.+ |+... +......+++++| -++.+.|++++
T Consensus       174 ~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  174 RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            112221 2  247789999999988887788999999988 66533 3333358999999 57778777664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.66  E-value=2.3e-06  Score=74.41  Aligned_cols=171  Identities=16%  Similarity=0.343  Sum_probs=112.7

Q ss_pred             eEEEEecCCCEEEEEE-----------CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec--CCcEE
Q 018806          103 QGVSWHQHKHIVAFIS-----------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGIC  169 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s-----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v~  169 (350)
                      ..+.|++.|++|++--           .+..+.|+++.   +..+... .+-.++|..++|.|.++++++++.  +-.+.
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~---e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s  301 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT---ERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVS  301 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeec---cccccee-ccccccceeeeecccCCceeEEeccccccee
Confidence            4567889998877631           13456777774   2222222 245789999999999888887764  58888


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--CeEEEEeCCCCCc
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGLG  247 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--g~i~iwd~~~~~~  247 (350)
                      ++|++..  ...                        .+.   ...=..+.|+|.+++++.++.++  |.+.+||......
T Consensus       302 ~~~lr~N--l~~------------------------~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         302 VFDLRGN--LRF------------------------YFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             ecccccc--eEE------------------------ecC---CcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            8888721  110                        011   12345688999999999987765  6899999876543


Q ss_pred             eeeeecCCCeEEEEEcCCCCEEEEEe------cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEE
Q 018806          248 TPIRRGFGGLSILKWSPTGDYFFAAK------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       248 ~~~~~~~~~v~~~~~sp~g~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      ..-.-......-+.|+|||+++.+..      .|..++|||+...+.-       ..+.+.|.|.|++..+.
T Consensus       353 ~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~tts  417 (561)
T COG5354         353 VAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTS  417 (561)
T ss_pred             EEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhccccCCcccceee
Confidence            33122234455678999999987653      3788999999765443       34556666666665544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.64  E-value=1.5e-05  Score=78.02  Aligned_cols=195  Identities=18%  Similarity=0.282  Sum_probs=120.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccC-------------CC--------CCceeEe---------------cC--
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED-------------SE--------GKDACIL---------------TS--  141 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~-------------~~--------~~~~~~~---------------~~--  141 (350)
                      ..|.+++||||+..||.++.++++.+..-+-             +.        |++..++               ..  
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~  200 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPK  200 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCc
Confidence            4799999999999999999999888764320             00        0000000               00  


Q ss_pred             ------CCCCCeeEEEEeeCCCeEEEEec------CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccC
Q 018806          142 ------DSQRDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS  209 (350)
Q Consensus       142 ------~~~~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (350)
                            ..+..-..++|-.||+++++..-      .+.++||+-+ + ....                         ...
T Consensus       201 ~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~s-------------------------tSE  253 (928)
T PF04762_consen  201 VDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQS-------------------------TSE  253 (928)
T ss_pred             cccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEe-------------------------ccc
Confidence                  02234567889999888777654      1578899876 1 1111                         011


Q ss_pred             CCCCceeeEEECCCCCeEEEEEeC--CCeEEEEeCCCCCceee--e--ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          210 QNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPI--R--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       210 ~~~~~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~~~~~~~~~--~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      ..++--.+++|.|.|..||+.-..  .-.|.+|.-+.-+.-.+  .  .....+..+.|++|+..||..-.|. |.+|-.
T Consensus       254 ~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  254 PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence            112344678999999999988651  12677777554332221  1  2346789999999999999877555 999988


Q ss_pred             CCCce--ec-cc-cCCCCeEEEEEcCCCC-EEEEEEC-CCeEEEE
Q 018806          284 NTWTS--EP-WS-STSGFVTGATWDPEGR-MILLAFA-GSLTLGS  322 (350)
Q Consensus       284 ~~~~~--~~-~~-~~~~~v~~~~~s~~g~-~l~~~~~-~~~~~~~  322 (350)
                      .+..-  ++ +. .....+..+.|+|... .|.+.+. +....+.
T Consensus       333 ~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  333 SNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             eCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence            77653  22 22 2233445589999543 3555553 5543333

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=3.1e-06  Score=74.38  Aligned_cols=182  Identities=14%  Similarity=0.187  Sum_probs=123.0

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-----------CcEEE
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----------GGICI  170 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------~~v~i  170 (350)
                      =+-+.|||-|.+|++--..| |.+|-=..  -.....+  .|. .|.-+.|||+.++|++-+..           ..++|
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~--f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGES--FDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCcc--HHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            46789999999999987777 77997421  2333333  355 58999999997777775531           56899


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~  250 (350)
                      ||+.++.....+..                      +++.. ....-+.||.|++++|.-..+  .|.||+..+......
T Consensus       287 WDI~tG~lkrsF~~----------------------~~~~~-~~WP~frWS~DdKy~Arm~~~--sisIyEtpsf~lld~  341 (698)
T KOG2314|consen  287 WDIATGLLKRSFPV----------------------IKSPY-LKWPIFRWSHDDKYFARMTGN--SISIYETPSFMLLDK  341 (698)
T ss_pred             EEccccchhcceec----------------------cCCCc-cccceEEeccCCceeEEeccc--eEEEEecCceeeecc
Confidence            99996655444332                      11111 223457899999999988776  799999876433322


Q ss_pred             ee-cCCCeEEEEEcCCCCEEEEEec--C---CeEEEEeCCCCceecccc-CCCCeEEEEEcCCCCEEEEEE
Q 018806          251 RR-GFGGLSILKWSPTGDYFFAAKF--D---GTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       251 ~~-~~~~v~~~~~sp~g~~l~~~~~--d---~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .. ...+|....|+|.++.||.-..  +   ..+.+..+.++...+... +.-.-..+-|-.+|.+|++-.
T Consensus       342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence            22 2367889999999999886533  1   367788887776643332 222234577889999998764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.61  E-value=2.6e-07  Score=83.62  Aligned_cols=185  Identities=14%  Similarity=0.239  Sum_probs=128.3

Q ss_pred             cCeeEEEEecCC---CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe-cCCcEEEEecCC
Q 018806          100 VDLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp~g---~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~  175 (350)
                      -.|-.+.|||..   .++++.+. ....+|++.......+.....+|...|+.+.|+|...-+++.. .|-.+..||++.
T Consensus        68 w~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             chhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            368888998865   35555444 4455999987666666777779999999999998866555544 489999999985


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--eeeec
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRG  253 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~~~~~  253 (350)
                      ...+...                        ....+ .....++|+-....+.+.+..+ .|++||.+.+...  .+.+|
T Consensus       147 p~~p~ys------------------------~~~w~-s~asqVkwnyk~p~vlasshg~-~i~vwd~r~gs~pl~s~K~~  200 (1081)
T KOG0309|consen  147 PHRPFYS------------------------TSSWR-SAASQVKWNYKDPNVLASSHGN-DIFVWDLRKGSTPLCSLKGH  200 (1081)
T ss_pred             CCcceee------------------------eeccc-ccCceeeecccCcchhhhccCC-ceEEEeccCCCcceEEeccc
Confidence            5433221                        11112 4667899987544444445553 8999999987532  35556


Q ss_pred             CCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEE
Q 018806          254 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       254 ~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~  311 (350)
                      ...+..+.|+.- ...+.+++.|++|++||......  ........+|+...|-|-|+-.+
T Consensus       201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence            677888888753 33577888999999999976544  34555667888888888665433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=2.7e-07  Score=79.51  Aligned_cols=174  Identities=16%  Similarity=0.182  Sum_probs=118.3

Q ss_pred             CeeEEEEecCCC-EEEEEECCCeEEEEEccCCCCCce----eE-----ecCCCCCCeeEEEEeeCCCeEEEEecCCcEEE
Q 018806          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDA----CI-----LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  170 (350)
Q Consensus       101 ~V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~~~~~----~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i  170 (350)
                      ...+++.+|... .+|+++.|..+++||...-.....    ..     +.....-.|++++++.++..++++-.|-.|++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            357788888654 888899999999998743222111    11     11123346999999999899999999999999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCC-CceeeEEE-CCCCCeEEEEEeCCCeEEEEeCCCCCce
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG-EQITALSW-GPDGRYLASASYESSSFTIWDVAQGLGT  248 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-sp~g~~l~~~~~d~g~i~iwd~~~~~~~  248 (350)
                      +.-..+.-.......   +         ..-.....+++|.+ ..|..+-| -|...++++|+.- |.|.||+-.+++.+
T Consensus       363 F~~~~~~G~~p~~~s---~---------~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC-GhIFiW~K~t~eii  429 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSS---P---------REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC-GHIFIWDKKTGEII  429 (559)
T ss_pred             eccccccCCCCCCCc---c---------hhhccchhhcccccccccceeeeccCccceEEecCcc-ceEEEEecchhHHH
Confidence            954422111110000   0         00011233677753 34667765 5778888888777 89999999999887


Q ss_pred             eeeec-CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc
Q 018806          249 PIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       249 ~~~~~-~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~  287 (350)
                      .++.. ..-|.|+.=+|--..||+++-|..|+||-..+.+
T Consensus       430 ~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  430 RFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             HHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            65544 4578899999999999999999999999774433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.59  E-value=0.00015  Score=60.53  Aligned_cols=191  Identities=16%  Similarity=0.267  Sum_probs=116.1

Q ss_pred             EEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEe-eCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          104 GVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       104 ~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ++.|.+ ++.++++-...+.|..|+...  +. ...+.  ... ...+++. ++ ..++++... .+.++|...+ ....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~--~~-~~~~~--~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g-~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT--GE-VEVID--LPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTG-KVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTT--TE-EEEEE--SSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTT-EEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCC--Ce-EEEEe--cCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCC-cEEE
Confidence            678998 666666655688898888753  32 22222  122 7778887 55 666666554 4555677632 1111


Q ss_pred             eecccccccceecCCCCCceEEeeec--cCCCCCceeeEEECCCCCeEEEEEeCC-------CeEEEEeCCCCCceeeee
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYES-------SSFTIWDVAQGLGTPIRR  252 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~-------g~i~iwd~~~~~~~~~~~  252 (350)
                                            ....  ..+......++++.|+|+..++.....       |.|..++.. ++...+..
T Consensus        75 ----------------------~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~  131 (246)
T PF08450_consen   75 ----------------------LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD  131 (246)
T ss_dssp             ----------------------EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred             ----------------------EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence                                  1111  121235788999999999666654321       357778877 55555555


Q ss_pred             cCCCeEEEEEcCCCCEEEE-EecCCeEEEEeCCCCc--e---eccc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 018806          253 GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWT--S---EPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~-~~~d~~v~iwd~~~~~--~---~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                      .-.....++|+|+++.|+. -+..+.|..|++....  .   ..+.   ...+..-.+++..+|+..++.. ....+..+
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~  210 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF  210 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence            5677889999999998764 4567889999986322  2   1121   2223478899999998766443 33466666


Q ss_pred             EeCC
Q 018806          324 HFAS  327 (350)
Q Consensus       324 ~~~~  327 (350)
                      +-..
T Consensus       211 ~p~G  214 (246)
T PF08450_consen  211 DPDG  214 (246)
T ss_dssp             ETTS
T ss_pred             CCCc
Confidence            6543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.59  E-value=1.6e-07  Score=84.90  Aligned_cols=179  Identities=11%  Similarity=0.165  Sum_probs=119.2

Q ss_pred             cCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..|+.+.|+|+. ..+|+++.|-.+..||+...  .........-......++|+-....+++.+..+.|++||++.+..
T Consensus       115 raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~  192 (1081)
T KOG0309|consen  115 RAITDINFNPQHPDVLATCSVDTYVHAWDMRSP--HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST  192 (1081)
T ss_pred             cceeccccCCCCCcceeeccccccceeeeccCC--CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence            358888898865 68899999999999999642  222222233445678899998778888888889999999996554


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCc--eeeeecCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG--TPIRRGFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~--~~~~~~~~  255 (350)
                      +                        ...+++|. ..|..+.|..- ...+.+++.| |+|+.||......  ......+.
T Consensus       193 p------------------------l~s~K~~v-s~vn~~~fnr~~~s~~~s~~~d-~tvkfw~y~kSt~e~~~~vtt~~  246 (1081)
T KOG0309|consen  193 P------------------------LCSLKGHV-SSVNSIDFNRFKYSEIMSSSND-GTVKFWDYSKSTTESKRTVTTNF  246 (1081)
T ss_pred             c------------------------eEEecccc-eeeehHHHhhhhhhhhcccCCC-CceeeecccccccccceeccccC
Confidence            3                        23355554 67788888653 3456777888 7999999876543  34445567


Q ss_pred             CeEEEEEcCCCC--EEEEEecCCeEEEEeCCC---------Cce--eccccCCCCeEEEEEcCC
Q 018806          256 GLSILKWSPTGD--YFFAAKFDGTFYLWETNT---------WTS--EPWSSTSGFVTGATWDPE  306 (350)
Q Consensus       256 ~v~~~~~sp~g~--~l~~~~~d~~v~iwd~~~---------~~~--~~~~~~~~~v~~~~~s~~  306 (350)
                      ++..-++-|-|+  ++.-.-.+..+.+++-++         +..  ..+.+|...|....|-..
T Consensus       247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r  310 (1081)
T KOG0309|consen  247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR  310 (1081)
T ss_pred             cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc
Confidence            788888888544  332222223444444332         221  456788887766666443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.55  E-value=5e-06  Score=68.92  Aligned_cols=187  Identities=13%  Similarity=0.158  Sum_probs=128.3

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCC-CCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..+++++++++....|+.|-..|++.-+.+...- ..........|...+..+-|+-..+.+++.+.|..+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            4579999999999999999999999877664211 111122223689999999998776788888888665433333222


Q ss_pred             CCc--eeecccccc--cceecCCCCCc------------eEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          178 NAA--SVRSGAASF--LGALSRGPGTR------------WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       178 ~~~--~~~~~~~~~--~~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                      ...  .+.......  +....+..+..            ..++..+.+|. +.+.+++|.|..+.|.++..|. .+.+||
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~-~~~~~l~Wd~~~~~LfSg~~d~-~vi~wd  225 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHT-GEVTCLKWDPGQRLLFSGASDH-SVIMWD  225 (404)
T ss_pred             cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcc-cceEEEEEcCCCcEEEeccccC-ceEEEe
Confidence            111  111111111  11122222211            12445677887 7999999999999999999995 999999


Q ss_pred             CCCCCc--eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc
Q 018806          242 VAQGLG--TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       242 ~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~  287 (350)
                      +...+.  .....|...|..++..+--+.+.+++.||.|.+||++...
T Consensus       226 igg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  226 IGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            976554  3466788888888888888889999999999999997543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.5e-05  Score=73.32  Aligned_cols=178  Identities=17%  Similarity=0.225  Sum_probs=122.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .++|++++  ++.++.|+-+|.+++.+..   +.. ... ..|...      .-+|+++++++.||+|.|-.+.+.....
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~---~~~-~~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQ---GNP-KTN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecC---Ccc-ccc-cccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            45555554  5789999999999999975   322 222 234433      5678899999999999998877554432


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-----CCeEEEEEeCCCeEEEEeCCC---CCceeeee
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-----GRYLASASYESSSFTIWDVAQ---GLGTPIRR  252 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~~~~~d~g~i~iwd~~~---~~~~~~~~  252 (350)
                      ...-                           ..++.+++++|+     .+++++|+.. | +.++.-+-   ........
T Consensus       108 ~~df---------------------------~rpiksial~Pd~~~~~sk~fv~GG~a-g-lvL~er~wlgnk~~v~l~~  158 (846)
T KOG2066|consen  108 QYDF---------------------------KRPIKSIALHPDFSRQQSKQFVSGGMA-G-LVLSERNWLGNKDSVVLSE  158 (846)
T ss_pred             eEec---------------------------CCcceeEEeccchhhhhhhheeecCcc-e-EEEehhhhhcCccceeeec
Confidence            2211                           258899999997     5678888877 6 77775432   12223445


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      ..++|.++.|.  |.+||-++.+| |+|||+.+++.....       ..+.....+.|.++.+. +.|-+..+.+..++
T Consensus       159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGDSVKICSIK  233 (846)
T ss_pred             CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCCeEEEEEEe
Confidence            67999999994  77888887766 999999988764322       11223456788886654 45767777777777

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.53  E-value=3.4e-05  Score=67.34  Aligned_cols=208  Identities=13%  Similarity=0.119  Sum_probs=117.3

Q ss_pred             cCeeEEEEecCCCEEEEEECC---------------CeEEEEEccCCCCCceeEecCCCCCC--ee-EEEEeeCCCeEEE
Q 018806          100 VDLQGVSWHQHKHIVAFISGS---------------TQVIVRDYEDSEGKDACILTSDSQRD--VK-VLEWRPNGGRSLS  161 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d---------------~~i~iw~~~~~~~~~~~~~~~~~~~~--v~-~~~~sp~~~~l~~  161 (350)
                      .+|..+.|||.+++|.+=+..               ..+.+||...  +..+... .....+  .+ -+.|+-++.+.+-
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s--g~iv~sf-~~~~q~~~~Wp~~k~s~~D~y~AR  148 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS--GMIVFSF-NGISQPYLGWPVLKFSIDDKYVAR  148 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC--ceeEeec-cccCCcccccceeeeeecchhhhh
Confidence            359999999999999985543               2488999853  4443333 232223  44 6789888544433


Q ss_pred             EecCCcEEEEecCCCCCCceeecccccccceecCCCCCc---eEEe--------------e-----eccCCC--CCceee
Q 018806          162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR---WTLV--------------D-----FLRSQN--GEQITA  217 (350)
Q Consensus       162 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~-----~~~~~~--~~~v~~  217 (350)
                       -....++|+++...-....+.......+..+++++.+.   +..+              .     .+..++  ...=..
T Consensus       149 -vv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q  227 (561)
T COG5354         149 -VVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ  227 (561)
T ss_pred             -hccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence             35577889886311111222222222233333333311   1111              1     011110  011236


Q ss_pred             EEECCCCCeEEEEEe-----------CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe--cCCeEEEEeCC
Q 018806          218 LSWGPDGRYLASASY-----------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK--FDGTFYLWETN  284 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~-----------d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~--~d~~v~iwd~~  284 (350)
                      +.|.+.|++|++-..           ++ .++++++............++|...+|.|.++.+++.+  ..-.+.++|++
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfges-nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGES-NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccc-eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence            789999998765321           22 68888888554443335578999999999988876554  57788999988


Q ss_pred             CCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          285 TWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       285 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .. + .+......=..+.|+|.++++++++
T Consensus       307 ~N-l-~~~~Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         307 GN-L-RFYFPEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             cc-e-EEecCCcccccccccCcccEEEEec
Confidence            75 2 2222222223445566666655543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.50  E-value=4.1e-06  Score=70.69  Aligned_cols=112  Identities=20%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             ceeeEEECCCCCeEEEEEeC--CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee--
Q 018806          214 QITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--  289 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~--  289 (350)
                      ..+++.|-.+......+..-  ...+.+|....+....+.+|-.-++.++|+||+++|+++..|..|+|-.+...-..  
T Consensus       109 ~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies  188 (390)
T KOG3914|consen  109 RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES  188 (390)
T ss_pred             CcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence            34555555554444443322  23566666666778889999999999999999999999999999999888765442  


Q ss_pred             ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          290 PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       290 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      -..+|...|..++.-++. .|++++ ++..++.|++.+
T Consensus       189 fclGH~eFVS~isl~~~~-~LlS~s-GD~tlr~Wd~~s  224 (390)
T KOG3914|consen  189 FCLGHKEFVSTISLTDNY-LLLSGS-GDKTLRLWDITS  224 (390)
T ss_pred             hccccHhheeeeeeccCc-eeeecC-CCCcEEEEeccc
Confidence            345899999999988754 455443 333455555443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.50  E-value=5.8e-07  Score=51.18  Aligned_cols=38  Identities=34%  Similarity=0.827  Sum_probs=34.2

Q ss_pred             EEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          202 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       202 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                      .+...+.+|. +.|.+++|+|++++|++++.| ++|++||
T Consensus         2 ~~~~~~~~h~-~~i~~i~~~~~~~~~~s~~~D-~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS-SSINSIAWSPDGNFLASGSSD-GTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS-SSEEEEEEETTSSEEEEEETT-SEEEEEE
T ss_pred             eEEEEEcCCC-CcEEEEEEecccccceeeCCC-CEEEEEC
Confidence            4567788886 799999999999999999999 6999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.47  E-value=0.00014  Score=62.84  Aligned_cols=111  Identities=18%  Similarity=0.246  Sum_probs=57.9

Q ss_pred             eeEEECCCCCeEEEEEe-CCC---eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCC---------------
Q 018806          216 TALSWGPDGRYLASASY-ESS---SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG---------------  276 (350)
Q Consensus       216 ~~~~~sp~g~~l~~~~~-d~g---~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---------------  276 (350)
                      ..=-|.|||..|..-+. .+|   .|.-+|..+++...+..- .....+.-++||++++.=+.|.               
T Consensus       241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~  319 (386)
T PF14583_consen  241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND  319 (386)
T ss_dssp             EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE------------------
T ss_pred             ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence            33457788877766443 112   566677777655443322 2445666688998876433331               


Q ss_pred             -eEEEEeCCCCceeccccCC---------C--CeEEEEEcCCCCEEEEEE--CCCeEEEEEEeCC
Q 018806          277 -TFYLWETNTWTSEPWSSTS---------G--FVTGATWDPEGRMILLAF--AGSLTLGSIHFAS  327 (350)
Q Consensus       277 -~v~iwd~~~~~~~~~~~~~---------~--~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~  327 (350)
                       -|++++++.++...+..|.         .  .=-.+.|+|||++|++.+  .+...+|.+.+..
T Consensus       320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~  384 (386)
T PF14583_consen  320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD  384 (386)
T ss_dssp             -EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred             cEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence             5777888877654333321         1  124679999999999988  4446777777653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=2.2e-06  Score=73.37  Aligned_cols=215  Identities=10%  Similarity=0.048  Sum_probs=137.7

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeec----
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS----  184 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~----  184 (350)
                      -.+++.+++.||.++.|.-..-.+......+..|-..|.+++.+-++-.+.+.+. |..++++|++.-.-..-+..    
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            4578999999999999986532444444444568889999999999655555566 79999999873221111110    


Q ss_pred             -------ccccccceecCC--CCCceEEee---------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-
Q 018806          185 -------GAASFLGALSRG--PGTRWTLVD---------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-  245 (350)
Q Consensus       185 -------~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-  245 (350)
                             ........++.+  ..+...+++         .+.+-+..+|..+.+.|-+..+++.... |.|.-|..... 
T Consensus        99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~-gmVEyWs~e~~~  177 (558)
T KOG0882|consen   99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS-GMVEYWSAEGPF  177 (558)
T ss_pred             CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc-ceeEeecCCCcc
Confidence                   011111111111  112222221         2233234789999999999988888777 79999988731 


Q ss_pred             -----Cce-------ee---eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc------------------
Q 018806          246 -----LGT-------PI---RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS------------------  292 (350)
Q Consensus       246 -----~~~-------~~---~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~------------------  292 (350)
                           ...       .+   ...+....++.|+|+|..+.+-+.|..|+++++++++..+..                  
T Consensus       178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~  257 (558)
T KOG0882|consen  178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM  257 (558)
T ss_pred             cCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence                 010       01   122356789999999999999999999999999998752211                  


Q ss_pred             ---------------cCC-CCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          293 ---------------STS-GFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       293 ---------------~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                                     .+. ..-+.+.|...|++|+.++--.+.+..++.
T Consensus       258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t  306 (558)
T KOG0882|consen  258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT  306 (558)
T ss_pred             eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence                           111 234678899999999998644445554443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.47  E-value=0.00021  Score=59.92  Aligned_cols=199  Identities=21%  Similarity=0.222  Sum_probs=123.6

Q ss_pred             eeEEEEec-CCCEEEEEECCCe-EEEEEccCCCCCceeEecCCCCC-CeeEEEEeeCCCeEEEEecC-----CcEEEEec
Q 018806          102 LQGVSWHQ-HKHIVAFISGSTQ-VIVRDYEDSEGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGCK-----GGICIWAP  173 (350)
Q Consensus       102 V~~v~~sp-~g~~la~~s~d~~-i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~  173 (350)
                      ...++.+| ++..++++-.-|+ ..+||..+  ++....+...... ---.-.||+||+.|+++-.|     |.|-|||.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~--g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRT--GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCC--CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            45678888 5566777766654 45677743  5544444321111 11245799999888887554     88999999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe------CCC-----------e
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESS-----------S  236 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~------d~g-----------~  236 (350)
                      . .+                       +..+..+..+- -....+.+.|||+.|+.+..      |.|           .
T Consensus        85 ~-~~-----------------------~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   85 A-RG-----------------------YRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             c-CC-----------------------cEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            8 11                       11233344442 35577889999988887632      111           4


Q ss_pred             EEEEeCCCCCceee-----eecCCCeEEEEEcCCCCEEEEEecCC-------eEEEEeCCCC-ce-----eccccCCCCe
Q 018806          237 FTIWDVAQGLGTPI-----RRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTW-TS-----EPWSSTSGFV  298 (350)
Q Consensus       237 i~iwd~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~~~~~d~-------~v~iwd~~~~-~~-----~~~~~~~~~v  298 (350)
                      +...|..+|+....     ..|.-.+..+++.++|..++..-..+       -|.+++.... +.     ..+....+.+
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence            55667777765433     12456799999999997666554333       2444443331 11     1123456789


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          299 TGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       299 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      -+|+++++|.++++++-....+..|+...
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            99999999999999986666777776544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.47  E-value=4.5e-05  Score=73.33  Aligned_cols=207  Identities=14%  Similarity=0.270  Sum_probs=126.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC----
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY----  175 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----  175 (350)
                      ..|.++.|..++..|+.+...|.|.+-|..+  ..  ..+...-...|.+++||||.+.++.....+++.+-+-..    
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et--~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPET--LE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccc--cc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence            3699999999999999999999999988753  22  222223567899999999988777777777776654421    


Q ss_pred             CCCC-------ceeecccccc-cceecCCCCCceEEeeecc-----C--CCCCceeeEEECCCCCeEEEEEe----CCCe
Q 018806          176 PGNA-------ASVRSGAASF-LGALSRGPGTRWTLVDFLR-----S--QNGEQITALSWGPDGRYLASASY----ESSS  236 (350)
Q Consensus       176 ~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~--~~~~~v~~~~~sp~g~~l~~~~~----d~g~  236 (350)
                      .+..       ..+....+.. .+.|..+.. +-...+.+.     +  .....=+++.|--||+++++...    +...
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~g-r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEG-RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchh-hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            1111       0011111111 111111111 000000000     0  00123357999999999998432    2038


Q ss_pred             EEEEeCCCCCceeeeec-CCCeEEEEEcCCCCEEEEEe---cCCeEEEEeCCCCce----eccccCCCCeEEEEEcCCCC
Q 018806          237 FTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGR  308 (350)
Q Consensus       237 i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~---~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~s~~g~  308 (350)
                      |++||.+ |........ .+--.+++|-|.|.++++-.   .|+.|.+|.-+.-..    .++......+..++|+.++.
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence            9999987 544333322 23445799999999998763   356798987654333    23334445599999999999


Q ss_pred             EEEE
Q 018806          309 MILL  312 (350)
Q Consensus       309 ~l~~  312 (350)
                      .|++
T Consensus       303 iLAv  306 (1265)
T KOG1920|consen  303 ILAV  306 (1265)
T ss_pred             ceee
Confidence            9988

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=1.3e-06  Score=79.07  Aligned_cols=159  Identities=11%  Similarity=0.211  Sum_probs=116.3

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  221 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  221 (350)
                      +......++.|+...+.++++|.||.+++..+.+...-......          .......+.+++.||+ +.|.-+.|+
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gl----------aa~snLsmNQtLeGH~-~sV~vvTWN   80 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGL----------AAASNLSMNQTLEGHN-ASVMVVTWN   80 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccc----------ccccccchhhhhccCc-ceEEEEEec
Confidence            34567899999999788888888999999988743322111110          0112344567899997 799999999


Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCcee-eee--cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCC
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLGTP-IRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSG  296 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~  296 (350)
                      .+.+.|.++..+ |-|.+|-+-.+.... +..  .+.-|.+++|+.||..|+..-.||.|-+=.++....  +.+.+  .
T Consensus        81 e~~QKLTtSDt~-GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~  157 (1189)
T KOG2041|consen   81 ENNQKLTTSDTS-GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--Q  157 (1189)
T ss_pred             cccccccccCCC-ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--h
Confidence            999999888777 899999998886532 322  346688999999999999999999888877776554  22322  2


Q ss_pred             CeEEEEEcCCCCEEEEEE
Q 018806          297 FVTGATWDPEGRMILLAF  314 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~  314 (350)
                      ....+.|++|.+.++++-
T Consensus       158 ~l~hv~ws~D~~~~Lf~~  175 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQALFKK  175 (1189)
T ss_pred             eccceeecccHHHHHhhh
Confidence            245788999988877764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1.5e-05  Score=67.59  Aligned_cols=221  Identities=10%  Similarity=0.071  Sum_probs=122.0

Q ss_pred             ccCeeEEEEecCCC-EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      +..|.+++|||..+ ++..++.+.+|+|.|+++  ....... ..+ ..+++++|.-|..+++++|. .|.|.|||++..
T Consensus       193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet--~~~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET--SCVVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             chhhhhhccCccccceeeeeccCceEEEEeccc--ceeeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            45799999999887 788899999999999964  2222222 234 78999999999888888887 599999999865


Q ss_pred             CCCceeec--ccccccceecCCCCCc-----------------eEEee-------eccCCCCCceeeEEECCCCCeEEEE
Q 018806          177 GNAASVRS--GAASFLGALSRGPGTR-----------------WTLVD-------FLRSQNGEQITALSWGPDGRYLASA  230 (350)
Q Consensus       177 ~~~~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~~~~v~~~~~sp~g~~l~~~  230 (350)
                      .....-..  ....++..++.-+..+                 |....       ++.-...+...+++..+-.++++..
T Consensus       269 ~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  269 EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             CchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence            43321111  1222222211111110                 11000       0111112455666666655665554


Q ss_pred             EeCCC------eEEE-EeCCCCCcee--eeecCC----Ce--EEEEE-cCCCCEEE-EEecCCeEEEEeCCCCceecccc
Q 018806          231 SYESS------SFTI-WDVAQGLGTP--IRRGFG----GL--SILKW-SPTGDYFF-AAKFDGTFYLWETNTWTSEPWSS  293 (350)
Q Consensus       231 ~~d~g------~i~i-wd~~~~~~~~--~~~~~~----~v--~~~~~-sp~g~~l~-~~~~d~~v~iwd~~~~~~~~~~~  293 (350)
                      ...+-      .|-. -|...|....  ...+.+    .+  ....+ .++.++|+ ++...+.+.+||..+.+..+...
T Consensus       349 yRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~  428 (463)
T KOG1645|consen  349 YRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA  428 (463)
T ss_pred             ecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc
Confidence            33210      1111 1222222111  001100    00  01112 34455554 45556799999999999877666


Q ss_pred             CCCCeEEEEEcC-C-CCEEEEEECCCeEEEEE
Q 018806          294 TSGFVTGATWDP-E-GRMILLAFAGSLTLGSI  323 (350)
Q Consensus       294 ~~~~v~~~~~s~-~-g~~l~~~~~~~~~~~~~  323 (350)
                      ...+|.++.... + +.+|++=.++...++.+
T Consensus       429 ~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  429 LSEPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             cCcceeecceeecCCcchhhheecceEEEEec
Confidence            678888776543 2 34565555555555544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.45  E-value=3.7e-06  Score=67.10  Aligned_cols=72  Identities=18%  Similarity=0.382  Sum_probs=59.4

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--eeeecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCC
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~  285 (350)
                      .|.+++-+|..+++++++.++|.+.+||.+.....  .+..|+.++..+-|+| ++..|+++++||.+.-||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            58889999987777666655589999999987432  2456889999999999 578899999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.44  E-value=1e-06  Score=50.12  Aligned_cols=34  Identities=26%  Similarity=0.725  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEe
Q 018806          249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  282 (350)
Q Consensus       249 ~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd  282 (350)
                      .+..|...|.+++|+|++++|++++.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567889999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.40  E-value=2.5e-05  Score=71.32  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce---------eee---ecCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---------PIR---RGFGGLSILKWSPTGDYFFAAKFDGTFYL  280 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~---------~~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  280 (350)
                      .....+.++|||+++++++.-+.++.+.|+.+.+..         .+.   .-.......+|.++|....+..-|..|..
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEE
Confidence            467889999999999988876579999999875421         011   11234567899999987777788999999


Q ss_pred             EeCCC----------Cceec-cc-----cCCCCeEEEEEcCCCCEEEEEE
Q 018806          281 WETNT----------WTSEP-WS-----STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       281 wd~~~----------~~~~~-~~-----~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ||+..          ..... +.     +|......=.-.|||++|++.+
T Consensus       401 wn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        401 WNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             EehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            99876          12211 21     2221111223478999998764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.37  E-value=0.00022  Score=62.86  Aligned_cols=100  Identities=17%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             eEEEC-CCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecCCCeE-EEEEcCCCCEEE-EEec----CCeEEEEeCC-CC
Q 018806          217 ALSWG-PDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLS-ILKWSPTGDYFF-AAKF----DGTFYLWETN-TW  286 (350)
Q Consensus       217 ~~~~s-p~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~-~~~~----d~~v~iwd~~-~~  286 (350)
                      .+.|. +++..++..+..+|  .|.+++...+....+..+.-.|. -+.|+++++.|. ++..    ...|+.-+++ .+
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            45554 77766665554445  67777877776666666666675 477899888774 4443    2367777888 66


Q ss_pred             ceeccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          287 TSEPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       287 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      +...+.........+.|||+|++++..+.+
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            666666544444699999999999887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=0.0001  Score=68.53  Aligned_cols=198  Identities=10%  Similarity=0.029  Sum_probs=120.2

Q ss_pred             EEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC-CeEEEEecC-C----cEEEEecCCCCCC
Q 018806          106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCK-G----GICIWAPSYPGNA  179 (350)
Q Consensus       106 ~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d-~----~v~iwd~~~~~~~  179 (350)
                      .|++.+..+|.|+.+|.|.+++-.   .+....+ ..+...+...-|.-++ ..|++.+.| .    .++||+++.....
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS---FQLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc---ceeeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            467889999999999998777642   2221222 3444453333344443 466667766 3    5899999843211


Q ss_pred             c-eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC----CCce-eeeec
Q 018806          180 A-SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGT-PIRRG  253 (350)
Q Consensus       180 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~----~~~~-~~~~~  253 (350)
                      . +....              ..++.....+....++.+++.+.+-+.+++|-.+ |.|..+.-+-    +... .....
T Consensus       106 ~sP~c~~--------------~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~n-G~V~~~~GDi~RDrgsr~~~~~~~  170 (933)
T KOG2114|consen  106 NSPQCLY--------------EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTN-GLVICYKGDILRDRGSRQDYSHRG  170 (933)
T ss_pred             CCcceee--------------eeeeeccCCCCCCCcceEEEEEccccEEEEEecC-cEEEEEcCcchhccccceeeeccC
Confidence            1 00000              0000110111124678899999998888888888 8999885321    1111 12234


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      ..+|+.+++..+++.++....-..|.+|.+.....  ..+..++..+.+.+|++-...++++.+.-...|.
T Consensus       171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~  241 (933)
T KOG2114|consen  171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD  241 (933)
T ss_pred             CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence            67899999999998854445556799999985552  3355677788888888866646656544334333

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.37  E-value=0.00031  Score=58.84  Aligned_cols=192  Identities=11%  Similarity=0.037  Sum_probs=111.6

Q ss_pred             EEEecCCCEEEEEE-----CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-------CcEEEEe
Q 018806          105 VSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-------GGICIWA  172 (350)
Q Consensus       105 v~~sp~g~~la~~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------~~v~iwd  172 (350)
                      -.||+||++|++.-     ..|.|-|||.. .....+..+ ..|.-.-..+.+.|||+.|+++-..       |..++ |
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-N  132 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-N  132 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-C
Confidence            46899999999853     36899999996 234444444 3455566788999998777664321       22222 2


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeec-cCCCCCceeeEEECCCCCeEEEEEeCCC-------eEEEEeCCC
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL-RSQNGEQITALSWGPDGRYLASASYESS-------SFTIWDVAQ  244 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~g-------~i~iwd~~~  244 (350)
                      ++.......           +-...++.+.-...+ ..++..++..+++.++|..++..-.. |       -+.+++...
T Consensus       133 l~tM~psL~-----------~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q-g~~~~~~PLva~~~~g~  200 (305)
T PF07433_consen  133 LDTMQPSLV-----------YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ-GDPGDAPPLVALHRRGG  200 (305)
T ss_pred             hhhcCCceE-----------EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC-CCCCccCCeEEEEcCCC
Confidence            221111100           000111221112223 12233689999999998766654333 2       234444332


Q ss_pred             CCceee-------eecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          245 GLGTPI-------RRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       245 ~~~~~~-------~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      . ...+       ..-.+.+-+++++++|.++++.+ ..+.+.+||..+++......-. -+..++-.+++ ++++++
T Consensus       201 ~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  201 A-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             c-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCC
Confidence            1 1111       12247899999999999886554 5679999999999986544332 35667766766 555443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.37  E-value=5.5e-07  Score=83.21  Aligned_cols=183  Identities=13%  Similarity=0.212  Sum_probs=127.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC--CcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~~  178 (350)
                      ..+|++|+-+.++|+.|+-.|.|+++++..  |...... .+|+..|+.+.-+-+|..+++.+.-  --..+|++.....
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s--G~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS--GSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccC--ccccccc-cccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence            479999999999999999999999999965  5544444 5899999999999999888887764  3567999873221


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee-ee----c
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RR----G  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~-~~----~  253 (350)
                      .                             .|.-..-.++.|+..-+.-+.++..+ ...+||+.++..... ..    .
T Consensus      1180 ~-----------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d-~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1180 P-----------------------------RHSFDEDKAVKFSNSLQFRALGTEAD-DALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred             c-----------------------------cccccccceeehhhhHHHHHhccccc-ceEEEecccCcHHHHhcCcchhh
Confidence            1                             12223446778877655545555553 799999999865432 22    2


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ...-....|+|+..+++-   ||  -+||++..+... +-..... ..-.|+|+|..++.-    ..+|+++.+
T Consensus      1230 ~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIIN----SEIwD~RTF 1293 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIIN----SEIWDMRTF 1293 (1516)
T ss_pred             hhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEee----chhhhhHHH
Confidence            233467889999987763   45  479998775532 2222222 234689999998877    567776654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=2.3e-06  Score=70.96  Aligned_cols=175  Identities=13%  Similarity=0.146  Sum_probs=111.3

Q ss_pred             CeeEEEEecC--CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~--g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..+.++|+-+  |-. ++.+.+-.+-+-++++  +..  .. ....+.|.++.|.-.+..++.+...|.|..+|++....
T Consensus       213 ~a~~CawSlni~gyh-fs~G~sqqv~L~nvet--g~~--qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq  286 (425)
T KOG2695|consen  213 KAWSCAWSLNIMGYH-FSVGLSQQVLLTNVET--GHQ--QS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ  286 (425)
T ss_pred             cchhhhhhhccceee-ecccccceeEEEEeec--ccc--cc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc
Confidence            3445577643  233 4445666677888864  321  11 13567799999998767777777789999999985421


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCce-eeeecCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~-~~~~~~~~  256 (350)
                      - .                  .|.... +  .+++.|+++..-. ++++|++.+.+ |+|++||.+--++. .+....+.
T Consensus       287 G-~------------------~~~a~r-l--yh~Ssvtslq~Lq~s~q~LmaS~M~-gkikLyD~R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  287 G-N------------------GWCAQR-L--YHDSSVTSLQILQFSQQKLMASDMT-GKIKLYDLRATKCKKSVMQYEGH  343 (425)
T ss_pred             C-C------------------CcceEE-E--EcCcchhhhhhhccccceEeeccCc-CceeEeeehhhhcccceeeeecc
Confidence            1 1                  111111 1  1246888887765 78899999999 79999999876552 12222222


Q ss_pred             eEE-----EEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC-----CCCeEEEEEc
Q 018806          257 LSI-----LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-----SGFVTGATWD  304 (350)
Q Consensus       257 v~~-----~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s  304 (350)
                      |..     +-..+....++++++|...+||.++.+........     +..+.+++|.
T Consensus       344 vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  344 VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            322     33456667888899999999999999987443322     2234555654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=2.5e-06  Score=70.71  Aligned_cols=132  Identities=13%  Similarity=0.068  Sum_probs=94.4

Q ss_pred             CCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCC---CCCceeEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEEE
Q 018806           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---EGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIW  171 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iw  171 (350)
                      +....+|.++.|...++++..|...|.|...|+...   ++.+...+  -|+..|+++..-. +++.|++++.+|+|++|
T Consensus       249 f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  249 FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            344558999999999999999999999999999643   23333444  4888999988765 56788888889999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCC-ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE-QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~  250 (350)
                      |++..+....                      +..+.||.+. ...-+...+....+++++.| -..+||.++.+.....
T Consensus       327 D~R~~K~~~~----------------------V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD-cytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  327 DLRATKCKKS----------------------VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD-CYTRIWSLDSGHLLCT  383 (425)
T ss_pred             eehhhhcccc----------------------eeeeecccccccccccccccccceEEEccCe-eEEEEEecccCceeec
Confidence            9984443222                      3345666421 11223445666788888888 5999999999977654


Q ss_pred             ee
Q 018806          251 RR  252 (350)
Q Consensus       251 ~~  252 (350)
                      ..
T Consensus       384 ip  385 (425)
T KOG2695|consen  384 IP  385 (425)
T ss_pred             cC
Confidence            43

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.33  E-value=0.00063  Score=56.08  Aligned_cols=191  Identities=13%  Similarity=0.186  Sum_probs=99.6

Q ss_pred             CeeEEEEecCCCEEEE-EECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      ++.+++|+|+.+.|++ ....+.|..++.   +++.+..+.....+-.-.+++..++ .++.+.. ++.+.++++.....
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~---~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL---DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEET---T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE----T
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcC---CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecccc
Confidence            4999999998765555 445666655554   3565555543334568889998764 4544443 68899988853322


Q ss_pred             CceeecccccccceecCCCCCceEEee-eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC---CCceeee---
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIR---  251 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~---~~~~~~~---  251 (350)
                      .......                .... .+....+..+-.++|+|.++.|+.+-..+ -..+|.++.   .......   
T Consensus        99 ~~~~~~~----------------~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~  161 (248)
T PF06977_consen   99 SLDRADV----------------QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQ  161 (248)
T ss_dssp             T--EEEE----------------EEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-H
T ss_pred             ccchhhc----------------eEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeecccc
Confidence            1111100                0000 01111235789999999888888776664 666666654   1111111   


Q ss_pred             ------ecCCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCceec---ccc-------CCCCeEEEEEcCCCCEEEEE
Q 018806          252 ------RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP---WSS-------TSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       252 ------~~~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~~---~~~-------~~~~v~~~~~s~~g~~l~~~  313 (350)
                            .....+.++.++|. |++++....++.|..+| ..|+...   +..       .-...-.|+|.++|++.+++
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence                  12245788999996 55667777788999999 4555532   221       11346789999999777655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.30  E-value=6.6e-06  Score=67.38  Aligned_cols=171  Identities=15%  Similarity=0.212  Sum_probs=108.5

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCC-----CCeeEEEEeeCCCe-EEEEecCCcEEE
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-----RDVKVLEWRPNGGR-SLSVGCKGGICI  170 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~-l~~~~~d~~v~i  170 (350)
                      .+...+.+++|+.|...+++ +.|-.|.+|+++..++.....-..+|.     .-|++..|+|.... +.++++.|.|++
T Consensus       170 aH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            34557899999999988887 467789999998665544333333443     35889999997544 445566799999


Q ss_pred             EecCCCCCC---ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          171 WAPSYPGNA---ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       171 wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      -|++.....   ..+......        +.    -..-+.+-. ..|..+.|+++|++|++-...  ++++||++..+.
T Consensus       249 ~DlRq~alcdn~~klfe~~~D--------~v----~~~ff~eiv-sSISD~kFs~ngryIlsRdyl--tvkiwDvnm~k~  313 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTID--------GV----DVDFFEEIV-SSISDFKFSDNGRYILSRDYL--TVKIWDVNMAKN  313 (460)
T ss_pred             hhhhhhhhccCchhhhhhccC--------cc----cchhHHHHh-hhhcceEEcCCCcEEEEeccc--eEEEEecccccC
Confidence            999832111   111000000        00    001122222 578899999999999987665  899999986532


Q ss_pred             -eeee-ec------------CCCe---EEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          248 -TPIR-RG------------FGGL---SILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       248 -~~~~-~~------------~~~v---~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                       .... -|            ...|   ..+.||-|.+.+++|+..+..-+|-.
T Consensus       314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence             2211 11            1233   35788988888988887776666653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.29  E-value=0.0013  Score=59.11  Aligned_cols=124  Identities=12%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             ceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeC---CC----eEEEEeCCCCCcee----eeecCCCeEEEEEcCCCC
Q 018806          200 RWTLVDFLRSQNGEQITALSWGP-DGRYLASASYE---SS----SFTIWDVAQGLGTP----IRRGFGGLSILKWSPTGD  267 (350)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d---~g----~i~iwd~~~~~~~~----~~~~~~~v~~~~~sp~g~  267 (350)
                      +..+...++..  ....++.||- +...+.+....   +|    .-.+|++...+...    .......+.+++++|+..
T Consensus       195 klEvL~yirTE--~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~  272 (545)
T PF11768_consen  195 KLEVLSYIRTE--NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED  272 (545)
T ss_pred             cEEEEEEEEec--CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc
Confidence            44444444443  3457777876 34445443221   12    34567776554332    224568899999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEEEeC
Q 018806          268 YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFA  326 (350)
Q Consensus       268 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~~~~~~  326 (350)
                      .++.|+.||+|.+||...+... +....-.++.++|+|+|..+++|++ +...++++-+.
T Consensus       273 kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  273 KLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             eEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999876443 3344456789999999999999874 44555555444

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.28  E-value=7.3e-05  Score=69.66  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=98.8

Q ss_pred             CCeeEEEEeeCCCeEEEEec------CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeE
Q 018806          145 RDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  218 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (350)
                      ..+.+.+.+|+|+.+++...      |..-.||-...++....+..+                           ...+..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g---------------------------~~~t~P  402 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG---------------------------HSLTRP  402 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC---------------------------CCCCCc
Confidence            46789999999999888762      444455544433322222111                           247788


Q ss_pred             EECCCCCeEEEEEeCC-----------CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEE---EeCC
Q 018806          219 SWGPDGRYLASASYES-----------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL---WETN  284 (350)
Q Consensus       219 ~~sp~g~~l~~~~~d~-----------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i---wd~~  284 (350)
                      .|+|||+.|++....+           +.+.+.+++.+....  ...+.|..+.|||||..|+... ++.|++   -...
T Consensus       403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~  479 (591)
T PRK13616        403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE  479 (591)
T ss_pred             eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence            9999998877765321           234444554443332  3356799999999999998766 477777   4444


Q ss_pred             CCcee-----cccc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC
Q 018806          285 TWTSE-----PWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  330 (350)
Q Consensus       285 ~~~~~-----~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~  330 (350)
                      .|+..     .+.. ....+.+++|..++.+++...+.+..++.+.+.....
T Consensus       480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~  531 (591)
T PRK13616        480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS  531 (591)
T ss_pred             CCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccc
Confidence            55421     1222 3334688999999997654445556788888876544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.25  E-value=6.5e-06  Score=81.76  Aligned_cols=154  Identities=14%  Similarity=0.193  Sum_probs=114.2

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  221 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  221 (350)
                      .+-..|.++.=+|....+++++.||.+++|....+.....+...                       +  ...|+.+.|+
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-----------------------g--~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-----------------------G--NSRVTRSRFN 2260 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-----------------------C--cchhhhhhhc
Confidence            35567888888898888999999999999998755443332222                       1  2689999999


Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe---cCCeEEEEeCCCCce--eccccCCC
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS--EPWSSTSG  296 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~---~d~~v~iwd~~~~~~--~~~~~~~~  296 (350)
                      .+|..+..+..| |.+.+|.+........+.|......++|-.  ..+++++   .++.+.+||.--...  ..-..|.+
T Consensus      2261 ~qGnk~~i~d~d-g~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGD-GDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred             ccCCceeeeccC-CceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence            999999999999 799999998444444556778888888865  4566553   467999999753332  22368999


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          297 FVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      .++.+++.|.-+.|++|+ .+.+.+|++
T Consensus      2338 gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred             CceEEEEcCcceEEEecCCcCcEEEeeh
Confidence            999999999999888776 444444444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.25  E-value=9.4e-07  Score=78.91  Aligned_cols=202  Identities=16%  Similarity=0.214  Sum_probs=127.2

Q ss_pred             CeeEEEEecCC--CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-----CcEEEEec
Q 018806          101 DLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAP  173 (350)
Q Consensus       101 ~V~~v~~sp~g--~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~  173 (350)
                      .+.|++++-+.  ..++.|..+|.|.+-.+..+... -..+..++...+++++|++-+...+++|.|     ..+.|||+
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            47777776543  58888999999999887532222 244455788999999999876667777654     56899999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~  253 (350)
                      ... ...++...                .    +.+.......+++|-.+.+.+.+|.... .+.++|++........-.
T Consensus       137 ~s~-ltvPke~~----------------~----fs~~~l~gqns~cwlrd~klvlaGm~sr-~~~ifdlRqs~~~~~svn  194 (783)
T KOG1008|consen  137 NSL-LTVPKESP----------------L----FSSSTLDGQNSVCWLRDTKLVLAGMTSR-SVHIFDLRQSLDSVSSVN  194 (783)
T ss_pred             ccc-cCCCcccc----------------c----cccccccCccccccccCcchhhcccccc-hhhhhhhhhhhhhhhhhh
Confidence            833 11111111                0    0110123455888888888888888874 899999984422222222


Q ss_pred             CCCeEEEEEcC-CCCEEEEEecCCeEEEEeC-CCCce-e-ccccCC----CCeEEEEEcCCCCEEEE-EECCCeEEEEEE
Q 018806          254 FGGLSILKWSP-TGDYFFAAKFDGTFYLWET-NTWTS-E-PWSSTS----GFVTGATWDPEGRMILL-AFAGSLTLGSIH  324 (350)
Q Consensus       254 ~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~-~~~~~-~-~~~~~~----~~v~~~~~s~~g~~l~~-~~~~~~~~~~~~  324 (350)
                      ...+..+...| .+.++++-. |+.|.+||. +.-+. . .+....    ..+..++|+|-..-+.+ ...++++++..+
T Consensus       195 Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  195 TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            34566677777 667776655 999999994 33222 1 122222    24889999996654443 345556666665


Q ss_pred             eC
Q 018806          325 FA  326 (350)
Q Consensus       325 ~~  326 (350)
                      +.
T Consensus       274 i~  275 (783)
T KOG1008|consen  274 IC  275 (783)
T ss_pred             cc
Confidence            54

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.21  E-value=0.00037  Score=61.44  Aligned_cols=223  Identities=20%  Similarity=0.323  Sum_probs=123.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCC----------------CCCeeEEEEeeCCCeEEEEe
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS----------------QRDVKVLEWRPNGGRSLSVG  163 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~sp~~~~l~~~~  163 (350)
                      ..+....|||+|+.||... ++.|.+++...  +........+.                -+.-..+-||||+++|++..
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~--~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT--GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTT--SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCC--CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            4578899999999999875 57788887743  33222222220                11236788999999999888


Q ss_pred             cC-CcEEEEecCC---CCC--Cc--eee---ccccccccee--cCCCCCceEEeee---ccCCCCCceeeEEECCCCCeE
Q 018806          164 CK-GGICIWAPSY---PGN--AA--SVR---SGAASFLGAL--SRGPGTRWTLVDF---LRSQNGEQITALSWGPDGRYL  227 (350)
Q Consensus       164 ~d-~~v~iwd~~~---~~~--~~--~~~---~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~g~~l  227 (350)
                      .| ..|..+.+..   ...  +.  .+.   .+...+...+  ..-..++...+..   +... +.-+..+.|.++++.|
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~-~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ-DYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS-SEEEEEEEEEETTEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC-ccCcccceecCCCcEE
Confidence            75 5555554431   111  11  111   1111111110  0011111111111   1122 3467899999999855


Q ss_pred             EEEEeCC----CeEEEEeCCCCCceeeee--cCCCe---EEEEEc-CCCCEE-EEEecCC--eEEEEeCCCCceeccccC
Q 018806          228 ASASYES----SSFTIWDVAQGLGTPIRR--GFGGL---SILKWS-PTGDYF-FAAKFDG--TFYLWETNTWTSEPWSST  294 (350)
Q Consensus       228 ~~~~~d~----g~i~iwd~~~~~~~~~~~--~~~~v---~~~~~s-p~g~~l-~~~~~d~--~v~iwd~~~~~~~~~~~~  294 (350)
                      +..-.+.    ..+.++|..++....+..  ..+.+   ....|. +++..+ .....+|  .|++++..++....+...
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G  278 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG  278 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S
T ss_pred             EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC
Confidence            5443321    257777888776654332  23333   355554 666554 4444666  677778888877777766


Q ss_pred             CCCeEE-EEEcCCCCEEEEEECC----CeEEEEEEeC
Q 018806          295 SGFVTG-ATWDPEGRMILLAFAG----SLTLGSIHFA  326 (350)
Q Consensus       295 ~~~v~~-~~~s~~g~~l~~~~~~----~~~~~~~~~~  326 (350)
                      .-.|.. +.|+++++.|++.+..    ...++.+.+.
T Consensus       279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            667754 7789999998877644    3688888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.20  E-value=0.00064  Score=60.99  Aligned_cols=94  Identities=15%  Similarity=0.275  Sum_probs=72.9

Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce---
Q 018806          212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---  288 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~---  288 (350)
                      +..+.+.+++|+.+.++.|+.| |.|.+||...+..... ...-.+..++|+|+|..+++|+..|.+.+||+.-...   
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~D-gSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q  336 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCED-GSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ  336 (545)
T ss_pred             CCcceEEecCcccceEEEEecC-CeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence            4689999999999999999999 7999999987743333 3445577899999999999999999999999864332   


Q ss_pred             -----------e---ccccCCCCeEEEEEcCCC
Q 018806          289 -----------E---PWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       289 -----------~---~~~~~~~~v~~~~~s~~g  307 (350)
                                 .   ....+......+.|++..
T Consensus       337 LlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  337 LLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             eccccCCCccEEeeehhccCcchhheeEeccCC
Confidence                       0   112345566788888544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0012  Score=58.76  Aligned_cols=194  Identities=15%  Similarity=0.136  Sum_probs=128.7

Q ss_pred             eeEEEEecCCCEEEEE-ECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec---CCcEEEEecCCCC
Q 018806          102 LQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPG  177 (350)
Q Consensus       102 V~~v~~sp~g~~la~~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~  177 (350)
                      -..+++++.+..+... ..++.|.+.|...  .........+.  ....++++|+++.+.++..   ++++.+.|-....
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcc--cceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            4577888888755544 4468899999643  33333332232  6788999999877777666   3666666665333


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-----eee
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRR  252 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-----~~~  252 (350)
                      ....+.                        .+.  .+ ..++++|+|..++.+..+++.|.+.|........     ...
T Consensus       152 ~~~~~~------------------------vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~  204 (381)
T COG3391         152 VTATIP------------------------VGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG  204 (381)
T ss_pred             EEEEEe------------------------cCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc
Confidence            322211                        111  23 8899999999888777555799999977665442     122


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecC---CeEEEEeCCCCceecc--c-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPW--S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d---~~v~iwd~~~~~~~~~--~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      -......+.++|+|+.+.+....   +.+...|..++.....  . ... ....+..+|+|+.+.+.......+..++..
T Consensus       205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            23445678999999987665443   5899999999887543  2 222 456789999999999886555566666654


Q ss_pred             C
Q 018806          327 S  327 (350)
Q Consensus       327 ~  327 (350)
                      .
T Consensus       284 ~  284 (381)
T COG3391         284 T  284 (381)
T ss_pred             C
Confidence            3

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.14  E-value=0.00017  Score=64.70  Aligned_cols=161  Identities=14%  Similarity=0.124  Sum_probs=88.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEE-ecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW-APSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw-d~~~~~~~  179 (350)
                      ....++++|+|+.+++ ..+|...|+....  ..  ...    .+.-..+.|.+. +.+++....++|.|+ ++. ....
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~--~r--~k~----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~-~~~~  102 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALA--WR--NKA----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFK-NEVV  102 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTT--TE--EEE----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTE-E-TT
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccC--Cc--ccc----cCceeEEEEecC-ccEEEEECCCeEEEEEcCc-cccc
Confidence            4688999999999988 5677777877321  11  111    234677899985 677777778889996 443 2111


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  259 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~  259 (350)
                      ..+..                           +..+..+-.   |..|...+.+  .|.+||+.+++........ +|..
T Consensus       103 k~i~~---------------------------~~~~~~If~---G~LL~~~~~~--~i~~yDw~~~~~i~~i~v~-~vk~  149 (443)
T PF04053_consen  103 KSIKL---------------------------PFSVEKIFG---GNLLGVKSSD--FICFYDWETGKLIRRIDVS-AVKY  149 (443)
T ss_dssp             --------------------------------SS-EEEEE----SSSEEEEETT--EEEEE-TTT--EEEEESS--E-EE
T ss_pred             eEEcC---------------------------CcccceEEc---CcEEEEECCC--CEEEEEhhHcceeeEEecC-CCcE
Confidence            11111                           112233322   7777766544  8999999998776655433 3899


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCC------------ceeccccCCCCeEEEEEcCC
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTW------------TSEPWSSTSGFVTGATWDPE  306 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~------------~~~~~~~~~~~v~~~~~s~~  306 (350)
                      +.|+++|++++..+.+ .++|++.+..            ....+......|.+.+|..|
T Consensus       150 V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  150 VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            9999999999888754 6778766543            12222222567888888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.08  E-value=0.00016  Score=65.89  Aligned_cols=199  Identities=14%  Similarity=0.100  Sum_probs=117.7

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~  180 (350)
                      |.=-+++..+++|+.|+.-|.+++|+-..  +........+..+.+..+..+++ ..++++++ .|.|.++-+.......
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~--~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHT--GEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCc--hhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCCCc
Confidence            44456677889999999999999999753  33323222233455666777887 55655555 5889988887533332


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-----CceeeeecCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFG  255 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-----~~~~~~~~~~  255 (350)
                      .+.                    .......+...|++++|++++..+++|... |+|..-.+.+.     ....+....+
T Consensus       113 ~~~--------------------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~-Gkv~~~~L~s~~~~~~~~q~il~~ds  171 (726)
T KOG3621|consen  113 LDY--------------------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQ-GKVVLTELDSRQAFLSKSQEILSEDS  171 (726)
T ss_pred             cee--------------------eccccccCCceEEEEEecccccEEeecCCC-ceEEEEEechhhhhccccceeeccCc
Confidence            221                    111222124799999999999999999887 89998888772     1223444556


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--cCCC-CeEEEEEcCC----CCEEEEEECCCeEEEEEEeCC
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSG-FVTGATWDPE----GRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~-~v~~~~~s~~----g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .|..+... ++..|++.. -+ -.+++++.++..++-  .-.+ .-...+|-|.    .+-.+++..-..++|..++.+
T Consensus       172 ~IVQlD~~-q~~LLVStl-~r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G  247 (726)
T KOG3621|consen  172 EIVQLDYL-QSYLLVSTL-TR-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG  247 (726)
T ss_pred             ceEEeecc-cceehHhhh-hh-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce
Confidence            77666654 333333322 22 235566554432211  1111 1123344332    333444555557888888765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.08  E-value=0.00016  Score=66.53  Aligned_cols=169  Identities=17%  Similarity=0.260  Sum_probs=109.6

Q ss_pred             CCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC
Q 018806          143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  222 (350)
Q Consensus       143 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  222 (350)
                      |...-.++.|+|.|  +++.|+...|.+-|...-+                         .++.+.-|. ..|+.+.|.|
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygshslV~VVDs~s~q-------------------------~iqsie~h~-s~V~~VrWap   65 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSHSLVSVVDSRSLQ-------------------------LIQSIELHQ-SAVTSVRWAP   65 (1062)
T ss_pred             CcccccccccCccc--eEEEecCceEEEEehhhhh-------------------------hhhccccCc-cceeEEEecc
Confidence            34457788999985  6666677778888877332                         234455554 7899999977


Q ss_pred             CC-----------C-eEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcC---CC-CEEEEEecCCeEEEEeCCC
Q 018806          223 DG-----------R-YLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSP---TG-DYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       223 ~g-----------~-~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp---~g-~~l~~~~~d~~v~iwd~~~  285 (350)
                      -.           . .|+++... |.|.+||...+.... +..+..++..++|-+   +. ..|++-....++.+||..+
T Consensus        66 ~~~p~~llS~~~~~lliAsaD~~-GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt  144 (1062)
T KOG1912|consen   66 APSPRDLLSPSSSQLLIASADIS-GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT  144 (1062)
T ss_pred             CCCchhccCccccceeEEecccc-CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence            21           1 34444445 899999999876544 555678889999875   34 4566667788999999999


Q ss_pred             Cceeccc-cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEEeC-CCCCCCceeeccccc
Q 018806          286 WTSEPWS-STSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFA-SKPPSLDAHLLPVDL  341 (350)
Q Consensus       286 ~~~~~~~-~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~  341 (350)
                      |+..--. .......++.+.| |.+.+.+-+.+. .+...++- ..++...+|..-|..
T Consensus       145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g-~vl~~~~l~~sep~~pgk~~qI~s  202 (1062)
T KOG1912|consen  145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG-FVLSCKDLGLSEPDVPGKEFQITS  202 (1062)
T ss_pred             CceeeccccCCcceeeeeeCCCCcceEEEEccCc-eEEEEeccCCCCCCCCceeEEEec
Confidence            9874333 2334456688888 455555544443 45555543 344455555554443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=2.2e-05  Score=69.21  Aligned_cols=154  Identities=13%  Similarity=0.186  Sum_probs=105.3

Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      .+|...|..++--.+.+.+++++.|++|++|.++..+....                  .-.+.-+++.|. .+|.++.|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~------------------tsaCQfTY~aHk-k~i~~igf  792 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG------------------TSACQFTYQAHK-KPIHDIGF  792 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc------------------cceeeeEhhhcc-Ccccceee
Confidence            47888888877655657899999999999999984332211                  112455677786 79999999


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCCcee-eee--cCCCeEEEEEcC--CCCEEEEE-ecCCeEEEEeCCCCcee-cc--
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRR--GFGGLSILKWSP--TGDYFFAA-KFDGTFYLWETNTWTSE-PW--  291 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~--~~~~v~~~~~sp--~g~~l~~~-~~d~~v~iwd~~~~~~~-~~--  291 (350)
                      -.+-++++++  | |-|.+||---+.... +..  ..+.+..+..-+  +...+..+ +...+|+++|.+..+-. .+  
T Consensus       793 L~~lr~i~Sc--D-~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  793 LADLRSIASC--D-GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             eeccceeeec--c-CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence            9988888765  6 689999987766543 221  122222222223  44555444 77899999999987652 12  


Q ss_pred             ---ccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          292 ---SSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       292 ---~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                         ......+.+++..+.|++++++-++
T Consensus       870 cna~~Pna~~R~iaVa~~GN~lAa~LSn  897 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKGNKLAAALSN  897 (1034)
T ss_pred             ccCCCCchheeEEEeccCcchhhHHhcC
Confidence               2344568899999999999987533

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.02  E-value=0.00079  Score=65.16  Aligned_cols=159  Identities=16%  Similarity=0.282  Sum_probs=99.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccC--C-------------------CCCceeEecCC----------------
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED--S-------------------EGKDACILTSD----------------  142 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~--~-------------------~~~~~~~~~~~----------------  142 (350)
                      ..|.+++||||+++++..+..+++.+..-+-  -                   =|+....+ .+                
T Consensus       110 ~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  110 NGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             CceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceee-ecchhhhccccccccccc
Confidence            4799999999999999999988887654310  0                   00000011 00                


Q ss_pred             -----CCCCeeEEEEeeCCCeEEEEe----cC-CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCC
Q 018806          143 -----SQRDVKVLEWRPNGGRSLSVG----CK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG  212 (350)
Q Consensus       143 -----~~~~v~~~~~sp~~~~l~~~~----~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (350)
                           ....=..+.|--||+.+++..    .+ ++++|||-+  +.....                         .....
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~-------------------------se~~~  241 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNST-------------------------SEPVE  241 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcc-------------------------cCccc
Confidence                 011123589998976666532    34 789999977  211111                         11112


Q ss_pred             CceeeEEECCCCCeEEEEE---eCCCeEEEEeCCCCCcee----eeecCCCeEEEEEcCCCCEEEE---EecCCeEEEEe
Q 018806          213 EQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLGTP----IRRGFGGLSILKWSPTGDYFFA---AKFDGTFYLWE  282 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~---~d~g~i~iwd~~~~~~~~----~~~~~~~v~~~~~sp~g~~l~~---~~~d~~v~iwd  282 (350)
                      +.-.+++|-|.|..+++..   .+ +.|.+|.-+.-..-.    .......+..++|+.++..||+   ......|++|-
T Consensus       242 ~l~~~LsWkPsgs~iA~iq~~~sd-~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  242 GLQHSLSWKPSGSLIAAIQCKTSD-SDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             ccccceeecCCCCeEeeeeecCCC-CcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence            3456899999999998763   34 379999866433221    1222344899999999999987   44455699998


Q ss_pred             CCCCc
Q 018806          283 TNTWT  287 (350)
Q Consensus       283 ~~~~~  287 (350)
                      +.+..
T Consensus       321 ~~Nyh  325 (1265)
T KOG1920|consen  321 TGNYH  325 (1265)
T ss_pred             ecCeE
Confidence            87654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.01  E-value=0.0045  Score=55.61  Aligned_cols=192  Identities=13%  Similarity=0.079  Sum_probs=103.5

Q ss_pred             EEEecCCCEEEEEECC----------C-eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEec
Q 018806          105 VSWHQHKHIVAFISGS----------T-QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  173 (350)
Q Consensus       105 v~~sp~g~~la~~s~d----------~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~  173 (350)
                      ++.+|.|.-||....+          . .|+||+..   |+.+..+...+ +.|.++.|+.+ ..|++...||.++++|+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s---G~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS---GKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC---CCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence            4566667666665433          1 48888864   66666655445 78999999987 88999999999999998


Q ss_pred             CCCCCCceeecc----------------cccccceecCCCCCceEEeeeccCC--------CCCceee----------EE
Q 018806          174 SYPGNAASVRSG----------------AASFLGALSRGPGTRWTLVDFLRSQ--------NGEQITA----------LS  219 (350)
Q Consensus       174 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~----------~~  219 (350)
                      . +..  .+..+                .....+-+....+..+.....+...        .......          ..
T Consensus       109 ~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  109 F-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             C-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence            5 222  11100                0000111111222222222211110        0000000          11


Q ss_pred             ECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cc-cCCCC
Q 018806          220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGF  297 (350)
Q Consensus       220 ~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~  297 (350)
                      ++.+....+....+ +.+.+.+-...+.   ....+++..++.||+|++||.-..+|.+.+...+-.+... +. .....
T Consensus       186 l~~~~~~~i~~~~g-~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~  261 (410)
T PF04841_consen  186 LSSDRVVEILLANG-ETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP  261 (410)
T ss_pred             eecCcceEEEEecC-CEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence            22233333333333 2444333222111   2234689999999999999999999999998765544421 11 22345


Q ss_pred             eEEEEEcCCCC
Q 018806          298 VTGATWDPEGR  308 (350)
Q Consensus       298 v~~~~~s~~g~  308 (350)
                      ...|.|.-+..
T Consensus       262 p~~~~WCG~da  272 (410)
T PF04841_consen  262 PKQMAWCGNDA  272 (410)
T ss_pred             CcEEEEECCCc
Confidence            66777776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.99  E-value=3.4e-05  Score=61.76  Aligned_cols=72  Identities=14%  Similarity=0.226  Sum_probs=60.1

Q ss_pred             CeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC-CCeEEEEecCCcEEEEecC
Q 018806          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~  174 (350)
                      .|++++-+|.. +.+++|+.||.+-+||+..  ...+..+...|+.+|+.+.|+|. +.+|++++.||.+--||..
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn--~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARN--VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccc--ccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            58999999965 5666788899999999964  45556666789999999999985 5689999999999999987

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0095  Score=53.10  Aligned_cols=194  Identities=18%  Similarity=0.173  Sum_probs=123.4

Q ss_pred             eeEEEEecCCCEEEEEECCC-eEEEEEccCCCCCceeEecCCCC-CCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGST-QVIVRDYEDSEGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  178 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~-~i~iw~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~  178 (350)
                      ...+...+++..+....... .+...+..   ... ......-. ..-..++.++.+.+++....+ +.|.+.|......
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~---~n~-~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDAT---SNT-VTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccc---cce-eeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence            55677788885555543322 33333331   111 11111111 334577888887767666654 8999999664433


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC--CCeEEEEeCCCCCceeeee-cCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIRR-GFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~~~~~~~~~~~-~~~  255 (350)
                      ......+                           .....++++|+++.++.+...  ++++.+.|..+.+...... ...
T Consensus       109 ~~~~~vG---------------------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~  161 (381)
T COG3391         109 LGSIPVG---------------------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT  161 (381)
T ss_pred             eeEeeec---------------------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence            3222221                           256789999999988887662  3599999988887655422 223


Q ss_pred             CeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceec-----cccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEEEeCC
Q 018806          256 GLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFAS  327 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~--~~~~~~~~~~  327 (350)
                      + ..++++|+|+.++... .++.|.+.|..+....+     ..........++++|+|..+++.....  ..+..++...
T Consensus       162 P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         162 P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence            4 8899999999776654 68899999987766653     122334457789999999988887554  4666665544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.94  E-value=0.0029  Score=59.29  Aligned_cols=187  Identities=13%  Similarity=0.120  Sum_probs=104.2

Q ss_pred             cCeeEEEEecCCCEEEEEE------CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEe
Q 018806          100 VDLQGVSWHQHKHIVAFIS------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWA  172 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd  172 (350)
                      ..+.+.++||+|+.+|+..      .|..-.||-.... +.. ..++.+  .......|+|+|+.+.+.... ..+++.+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            4688999999999998866      2554556655422 222 333333  248899999998877776543 2233333


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEE---EeCCCCCcee
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI---WDVAQGLGTP  249 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~i---wd~~~~~~~~  249 (350)
                      .........+....                  ........+.|..+.|||||+.++... + |.|++   -....|....
T Consensus       426 ~~~~gql~~~~vd~------------------ge~~~~~~g~Issl~wSpDG~RiA~i~-~-g~v~Va~Vvr~~~G~~~l  485 (591)
T PRK13616        426 DPATGQLARTPVDA------------------SAVASRVPGPISELQLSRDGVRAAMII-G-GKVYLAVVEQTEDGQYAL  485 (591)
T ss_pred             cCCCceEEEEeccC------------------chhhhccCCCcCeEEECCCCCEEEEEE-C-CEEEEEEEEeCCCCceee
Confidence            22111111000000                  000001135799999999999999876 4 57877   4444454111


Q ss_pred             -----eeecCC-CeEEEEEcCCCCEEEEEecCC--eEEEEeCCCCceecccc--CCCCeEEEEEcCCCCEEEEE
Q 018806          250 -----IRRGFG-GLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSS--TSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       250 -----~~~~~~-~v~~~~~sp~g~~l~~~~~d~--~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~  313 (350)
                           +..... .+.++.|..++.++ ++..++  .++..++.......+..  ....+..++=+++  .|+++
T Consensus       486 ~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~  556 (591)
T PRK13616        486 TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVT  556 (591)
T ss_pred             cccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEE
Confidence                 222223 36889999999855 444443  45555555433322222  2566777877763  34444

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.93  E-value=0.00015  Score=67.93  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=98.8

Q ss_pred             cCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---------CcEEEEecCCCCCC
Q 018806          109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------GGICIWAPSYPGNA  179 (350)
Q Consensus       109 p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------~~v~iwd~~~~~~~  179 (350)
                      .+++.+.+|...|+|.+-|...  .+.+..+ ..|.+.|.++..+  |+.|+++|..         ..|+|||++.-+..
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s--~~~iht~-~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral  259 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNS--FETIHTF-DAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL  259 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCc--Cceeeee-eccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence            4678899999999999999853  4444555 5799999876654  6788888754         34789999844332


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEe---CCCCCc-eeeee-c
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWD---VAQGLG-TPIRR-G  253 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd---~~~~~~-~~~~~-~  253 (350)
                      ..+                         .-+  ....-+.|.|. ...++.++.. |...+-|   +..... ..+.. .
T Consensus       260 ~PI-------------------------~~~--~~P~flrf~Psl~t~~~V~S~s-Gq~q~vd~~~lsNP~~~~~~v~p~  311 (1118)
T KOG1275|consen  260 SPI-------------------------QFP--YGPQFLRFHPSLTTRLAVTSQS-GQFQFVDTATLSNPPAGVKMVNPN  311 (1118)
T ss_pred             CCc-------------------------ccc--cCchhhhhcccccceEEEEecc-cceeeccccccCCCccceeEEccC
Confidence            222                         111  12345677775 4566667777 7999988   333322 22222 2


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEe
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWE  282 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd  282 (350)
                      ...+..++++++|+.++.+..+|.|.+|.
T Consensus       312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  312 GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCcceeEEecCCCceEEEecccCcEeeec
Confidence            34599999999999999999999999997

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.92  E-value=0.00055  Score=62.88  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=70.6

Q ss_pred             ceeeEEECCCCCeEEEEEe---CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC-----
Q 018806          214 QITALSWGPDGRYLASASY---ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-----  285 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~---d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~-----  285 (350)
                      ....++++|+|+++++++.   ..+++...+.........+.-. .  .-++.++|++...  .++.|.+.|..+     
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~  310 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-R--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAG  310 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-H--HHHhhhCCCEEEE--CCCEEEEEECCccccCC
Confidence            4567899999999988863   2234444443322211111100 0  0134568887665  367899999998     


Q ss_pred             CceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          286 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       286 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      .+......-......++++|||+++++++..+..+-.+++....
T Consensus       311 ~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        311 SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            34455555667789999999999999998655566666665433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.91  E-value=0.00061  Score=64.00  Aligned_cols=171  Identities=12%  Similarity=0.161  Sum_probs=107.1

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccccccc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      +..++.|+-...+..+|+..  .+...... -..+.|.-++-  +++.++++...|+|.+-|...-              
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~--~~e~r~~~-v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~--------------  207 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNT--EKETRTTN-VSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF--------------  207 (1118)
T ss_pred             Ccceeecchhhheeeeeccc--ceeeeeee-ccCCceEEEEe--cCcEEEeecccceEEeecCCcC--------------
Confidence            34555565555566677743  33333222 22334666654  3355555555799999998732              


Q ss_pred             ceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--------CeEEEEeCCCCCceeeeecCCCeEEEEE
Q 018806          191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------SSFTIWDVAQGLGTPIRRGFGGLSILKW  262 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--------g~i~iwd~~~~~~~~~~~~~~~v~~~~~  262 (350)
                                 ....++..|. +.+.++..  .|+.|++++...        -.|++||++..+...=..-.....-+.|
T Consensus       208 -----------~~iht~~aHs-~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf  273 (1118)
T KOG1275|consen  208 -----------ETIHTFDAHS-GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRF  273 (1118)
T ss_pred             -----------ceeeeeeccc-cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhh
Confidence                       3356677776 57776554  588888886531        2689999987654432222223355778


Q ss_pred             cCC-CCEEEEEecCCeEEEEeCC---CCce--eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          263 SPT-GDYFFAAKFDGTFYLWETN---TWTS--EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       263 sp~-g~~l~~~~~d~~v~iwd~~---~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .|. -..+++++..|...+-|..   +...  .........+..+.+|++|+.|+++.
T Consensus       274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd  331 (1118)
T KOG1275|consen  274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD  331 (1118)
T ss_pred             cccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec
Confidence            885 4567888889999999843   3222  12223445599999999999999985

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=0.00083  Score=60.41  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             CCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC
Q 018806          144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  223 (350)
Q Consensus       144 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  223 (350)
                      .-....+.++|+|+ +++...+|...|+.......                         .      ..+....++|.+.
T Consensus        32 ~~~p~~ls~npngr-~v~V~g~geY~iyt~~~~r~-------------------------k------~~G~g~~~vw~~~   79 (443)
T PF04053_consen   32 EIYPQSLSHNPNGR-FVLVCGDGEYEIYTALAWRN-------------------------K------AFGSGLSFVWSSR   79 (443)
T ss_dssp             SS--SEEEE-TTSS-EEEEEETTEEEEEETTTTEE-------------------------E------EEEE-SEEEE-TS
T ss_pred             CcCCeeEEECCCCC-EEEEEcCCEEEEEEccCCcc-------------------------c------ccCceeEEEEecC
Confidence            34578999999955 55557788888887331100                         0      0145677899996


Q ss_pred             CCeEEEEEeCCCeEEEE-eCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEE
Q 018806          224 GRYLASASYESSSFTIW-DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGAT  302 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iw-d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  302 (350)
                      ++ +|+-... .+|.++ +........+ .....+..+-.   |..|+..+. +.|.+||..+++........ .|..+.
T Consensus        80 n~-yAv~~~~-~~I~I~kn~~~~~~k~i-~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~  151 (443)
T PF04053_consen   80 NR-YAVLESS-STIKIYKNFKNEVVKSI-KLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVI  151 (443)
T ss_dssp             SE-EEEE-TT-S-EEEEETTEE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEE
T ss_pred             cc-EEEEECC-CeEEEEEcCccccceEE-cCCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEE
Confidence            65 5555445 489996 4432221122 12222333322   887777664 48999999999886555443 389999


Q ss_pred             EcCCCCEEEEEECCCeEEEEEEeC
Q 018806          303 WDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       303 ~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      |+++|.+++..+.....+...+..
T Consensus       152 Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  152 WSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             E-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             EECCCCEEEEEeCCeEEEEEecch
Confidence            999999999998877777666655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.87  E-value=0.0074  Score=51.47  Aligned_cols=198  Identities=11%  Similarity=-0.016  Sum_probs=107.3

Q ss_pred             cCCCCcCCCCccCeeEEEEecCCCEEEEEE--CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC
Q 018806           89 LHPDHVHLLPEVDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG  166 (350)
Q Consensus        89 ~~p~~~~~~~~~~V~~v~~sp~g~~la~~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  166 (350)
                      ..|..++.+.......+++|.||++++...  -...|.|-|+..  .+....+.  -.+ +..+--+.+ +.+.+.+.||
T Consensus        84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~--~kvv~ei~--~PG-C~~iyP~~~-~~F~~lC~DG  157 (342)
T PF06433_consen   84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA--KKVVGEID--TPG-CWLIYPSGN-RGFSMLCGDG  157 (342)
T ss_dssp             EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT--TEEEEEEE--GTS-EEEEEEEET-TEEEEEETTS
T ss_pred             ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC--Cceeeeec--CCC-EEEEEecCC-CceEEEecCC
Confidence            455554444444566778999999988854  356788888853  44444442  222 333322333 5677888899


Q ss_pred             cEEEEecCCCCCCceeecccccccce--ecC----CCCCceE----------------------Eeeecc------CCCC
Q 018806          167 GICIWAPSYPGNAASVRSGAASFLGA--LSR----GPGTRWT----------------------LVDFLR------SQNG  212 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~----------------------~~~~~~------~~~~  212 (350)
                      .+.-..+...++.....+.-+.....  +..    ..++.+.                      .+..+.      +-.+
T Consensus       158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP  237 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP  237 (342)
T ss_dssp             CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred             ceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence            99888888666554332222222111  000    0111111                      011000      1112


Q ss_pred             CceeeEEECCCCCeEEEEEeCC--C-------eEEEEeCCCCCceeeeecCCCeEEEEEcCCCC-EEEEE-ecCCeEEEE
Q 018806          213 EQITALSWGPDGRYLASASYES--S-------SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD-YFFAA-KFDGTFYLW  281 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~--g-------~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~-~~d~~v~iw  281 (350)
                      +...-+++++...+|+......  |       .|.++|+.+++......-..++.+++.+.+.+ +|++. ..++.+.+|
T Consensus       238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVY  317 (342)
T ss_dssp             -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred             cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence            2334567776555555432210  1       68888999998876666566788999998876 55444 457899999


Q ss_pred             eCCCCceeccc
Q 018806          282 ETNTWTSEPWS  292 (350)
Q Consensus       282 d~~~~~~~~~~  292 (350)
                      |..+++.....
T Consensus       318 D~~tGk~~~~~  328 (342)
T PF06433_consen  318 DAATGKLVRSI  328 (342)
T ss_dssp             ETTT--EEEEE
T ss_pred             eCcCCcEEeeh
Confidence            99999885433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=0.00059  Score=62.97  Aligned_cols=151  Identities=20%  Similarity=0.251  Sum_probs=97.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC----------CeEEEEecC--CcE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG----------GRSLSVGCK--GGI  168 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~~~~~d--~~v  168 (350)
                      .-.++.|+|.| +||+|+.. .|.+-|..  +-+.+..+ ..|...|+.++|.|-.          ..++.++.|  |.|
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~--s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSR--SLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehh--hhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            46778899877 67777654 46676763  34444444 3688999999997631          234444444  999


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC---CCC-eEEEEEeCCCeEEEEeCCC
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP---DGR-YLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~-~l~~~~~d~g~i~iwd~~~  244 (350)
                      .+||+........                         +..+. .++..+.|-+   +.+ .|+.-...+ ++.+|+..+
T Consensus        92 il~d~~~~s~~~~-------------------------l~~~~-~~~qdl~W~~~rd~Srd~LlaIh~ss-~lvLwntdt  144 (1062)
T KOG1912|consen   92 ILVDFVLASVINW-------------------------LSHSN-DSVQDLCWVPARDDSRDVLLAIHGSS-TLVLWNTDT  144 (1062)
T ss_pred             EEEEehhhhhhhh-------------------------hcCCC-cchhheeeeeccCcchheeEEecCCc-EEEEEEccC
Confidence            9999984433322                         33333 5778888865   443 455555554 999999999


Q ss_pred             CCceeeeec-CCCeEEEEEcC-CCCEEEEEecCCeEEEEeC
Q 018806          245 GLGTPIRRG-FGGLSILKWSP-TGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       245 ~~~~~~~~~-~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~  283 (350)
                      |+....... +....|+.+.| |.+.+..-+..|.+-+-+.
T Consensus       145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            987654443 34456688888 5666666555666555543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.00041  Score=64.18  Aligned_cols=143  Identities=14%  Similarity=0.087  Sum_probs=104.1

Q ss_pred             CCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC
Q 018806          145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  224 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  224 (350)
                      ..+.+++++  +..++.+..+|.|++++.....  ..                         ...|.. .      .-+|
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~-------------------------~~~~s~-~------~~~G   83 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KT-------------------------NFDHSS-S------ILEG   83 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc--cc-------------------------cccccc-c------ccCC
Confidence            457777776  2566666668999999887221  11                         111111 1      5579


Q ss_pred             CeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCC-----CCEEEEEecCCeEEEEeCCC---CceeccccCCC
Q 018806          225 RYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT-----GDYFFAAKFDGTFYLWETNT---WTSEPWSSTSG  296 (350)
Q Consensus       225 ~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~~~~~d~~v~iwd~~~---~~~~~~~~~~~  296 (350)
                      .++++++.| |+|.|-.+-+.+.......+.++.+++++|+     .+.+++|+..| +.++.-+-   .....+....+
T Consensus        84 ey~asCS~D-Gkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG  161 (846)
T KOG2066|consen   84 EYVASCSDD-GKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG  161 (846)
T ss_pred             ceEEEecCC-CcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence            999999999 7999999988887777777889999999998     56788888888 76764321   11233556678


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          297 FVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +|.++.|.  |.++|.+.+.++++++.....
T Consensus       162 ~I~~i~W~--g~lIAWand~Gv~vyd~~~~~  190 (846)
T KOG2066|consen  162 PIHSIKWR--GNLIAWANDDGVKVYDTPTRQ  190 (846)
T ss_pred             ceEEEEec--CcEEEEecCCCcEEEeccccc
Confidence            99999997  889999998888888876543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.84  E-value=0.012  Score=48.61  Aligned_cols=186  Identities=13%  Similarity=0.028  Sum_probs=105.7

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccc
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      ++.++++++.++.+..||..+  ++..-....  ...+..... .++..+++...++.++.+|...+.........    
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~t--G~~~W~~~~--~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~----  105 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKT--GKVLWRFDL--PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT----  105 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTT--SEEEEEEEC--SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-----
T ss_pred             eCCEEEEEcCCCEEEEEECCC--CCEEEEeec--cccccceee-ecccccccccceeeeEecccCCcceeeeeccc----
Confidence            566777778999999999844  655444432  222222222 33467777778889999997744432221000    


Q ss_pred             cceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCC-C----------eE
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-G----------LS  258 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~-~----------v~  258 (350)
                                      .....  ..........++..++++..+ |.|..+|.++|+......... .          +.
T Consensus       106 ----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen  106 ----------------SSPPA--GVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN  166 (238)
T ss_dssp             ----------------SSCTC--STB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred             ----------------ccccc--ccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence                            00000  111222222237778777777 699999999998754332211 1          11


Q ss_pred             EEEEcCCCCEEEEEecCCe-EEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          259 ILKWSPTGDYFFAAKFDGT-FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      .-....++ .++.++.++. +.+ |+++++.. +......+.. ....++..|++++ .+..++.++....
T Consensus       167 ~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~-~~~~~~~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  167 GSPVISDG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYS-LPSVDGGTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             EEEECCTT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECE-CEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred             cceEEECC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccC-CceeeCCEEEEEe-CCCEEEEEECCCC
Confidence            22222345 6666776775 555 99999865 3322233332 1457788888777 4567888876654

...

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.81  E-value=0.019  Score=51.93  Aligned_cols=198  Identities=14%  Similarity=0.128  Sum_probs=109.0

Q ss_pred             eeEEEEecCCCEEEEEE-CCC----eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC----------
Q 018806          102 LQGVSWHQHKHIVAFIS-GST----QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG----------  166 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s-~d~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----------  166 (350)
                      +..+++||||++||.+- ..|    .++++|+.+  ++.+.....  ......+.|.++++.+++...+.          
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--g~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET--GKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT--TEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC--CcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            45678999999999763 333    588888854  543332211  11123399999988888887652          


Q ss_pred             -cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCc-eeeEEECCCCCeEEEEEeCCC---eEEEEe
Q 018806          167 -GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ-ITALSWGPDGRYLASASYESS---SFTIWD  241 (350)
Q Consensus       167 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~~~~~d~g---~i~iwd  241 (350)
                       .|+.|.+........+                       .+....... ...+..++|+++|+.......   .+++.|
T Consensus       202 ~~v~~~~~gt~~~~d~l-----------------------vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d  258 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDEL-----------------------VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD  258 (414)
T ss_dssp             EEEEEEETTS-GGG-EE-----------------------EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred             cEEEEEECCCChHhCee-----------------------EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence             2566666533222111                       112211122 567889999999876544321   578888


Q ss_pred             CCCC-----CceeeeecCCCeEEEEEcCCCCEEEEEec---CCeEEEEeCCCCce---e-ccccCCCCeEEEEEcCCCCE
Q 018806          242 VAQG-----LGTPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTS---E-PWSSTSGFVTGATWDPEGRM  309 (350)
Q Consensus       242 ~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---d~~v~iwd~~~~~~---~-~~~~~~~~v~~~~~s~~g~~  309 (350)
                      +..+     ....+......+....-+..+.+++....   ++.|...++.....   . .+..+...+.-..+...+.+
T Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  338 (414)
T PF02897_consen  259 LDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY  338 (414)
T ss_dssp             CCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred             ccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence            8875     34445554444443333334444444432   45777788887763   2 34455553333334445666


Q ss_pred             EEEEE--CCCeEEEEEEeC
Q 018806          310 ILLAF--AGSLTLGSIHFA  326 (350)
Q Consensus       310 l~~~~--~~~~~~~~~~~~  326 (350)
                      |+...  ++...+..+++.
T Consensus       339 Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  339 LVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEEETTEEEEEEEETT
T ss_pred             EEEEEEECCccEEEEEECC
Confidence            66654  555667777666

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.00038  Score=64.83  Aligned_cols=76  Identities=14%  Similarity=0.323  Sum_probs=62.3

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ...+++++|+|..-.||.|-.-|.+.+|....   .........|..+|..+.||++|..++++..-|.+.+|.....+
T Consensus        59 P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~---~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   59 PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT---TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ceehhhhccChHHHHHhhccccceeEEEecCC---ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            34578899999999999998899999999753   33345555799999999999999988888777999999887433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00016  Score=65.04  Aligned_cols=91  Identities=18%  Similarity=0.216  Sum_probs=72.6

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeE-EEEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~-~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      ..+.-+.|+|.-..||++..+ |.+.+..++ .+...... +...+. +++|.|||+.||+|-.||+|++-|++++....
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~-gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEK-GELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccC-CcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            467889999999999999999 799998888 44444333 555555 99999999999999999999999999988743


Q ss_pred             c--ccCCCCeEEEEEcC
Q 018806          291 W--SSTSGFVTGATWDP  305 (350)
Q Consensus       291 ~--~~~~~~v~~~~~s~  305 (350)
                      -  ..-...|..+-|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            2  44556778888874

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.75  E-value=0.01  Score=50.72  Aligned_cols=225  Identities=11%  Similarity=0.107  Sum_probs=122.0

Q ss_pred             eeEEEEecCCCEEEEEE----------CCCeEEEEEccCCCCCceeEecCCCC----CCeeEEEEeeCCCeEEEEec--C
Q 018806          102 LQGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGC--K  165 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~--d  165 (350)
                      .-.+..||+++.+++++          ..-.|.+||..+-.......+...|.    .....++++.||++++..-.  .
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence            34577899999888754          24468899986432222222321111    23355688888877776555  3


Q ss_pred             CcEEEEecCCCCCCceeeccccccc------ceecCCCCCceEEee-------------eccCCCCCceeeEEECCCCCe
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFL------GALSRGPGTRWTLVD-------------FLRSQNGEQITALSWGPDGRY  226 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~sp~g~~  226 (350)
                      ..|.|-|+..++....+....+..+      .-...|.++.+..+.             .+....+-....-++...+..
T Consensus       118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~  197 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR  197 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred             CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence            7788888885555444433322111      112334444332221             111111111123344445556


Q ss_pred             EEEEEeCCCeEEEEeCCCCCceeeee-------------cCCCeEEEEEcCCCCEEEEEec---C-------CeEEEEeC
Q 018806          227 LASASYESSSFTIWDVAQGLGTPIRR-------------GFGGLSILKWSPTGDYFFAAKF---D-------GTFYLWET  283 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~---d-------~~v~iwd~  283 (350)
                      ++..+.+ |.|+--|+..........             ..++-.-+++++..+.|++...   +       ..|.++|+
T Consensus       198 ~~F~Sy~-G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  198 LYFVSYE-GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEBTT-SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             EEEEecC-CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            6667778 788888887664322110             0134456888876666654322   1       15888999


Q ss_pred             CCCceeccccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEEEeCC
Q 018806          284 NTWTSEPWSSTSGFVTGATWDPEGRMILLA-FAGSLTLGSIHFAS  327 (350)
Q Consensus       284 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~  327 (350)
                      .+++.........++.+++.+.+.+=++.+ ..++..+..++...
T Consensus       277 ~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  277 KTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             TTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             CCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            999886544445578899999988755544 45555666666554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0003  Score=64.10  Aligned_cols=113  Identities=15%  Similarity=0.114  Sum_probs=84.8

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee--cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      ..+.--+++..+++++.|+.. |.+++|+-..++...+..  ..+.+..++.|++..++|.|+..|.|.++-+.......
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             ceEEEEEeecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            345555667788999999988 799999988887655544  44567778889999999999999999999887644321


Q ss_pred             -------cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          291 -------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       291 -------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                             -..|...|++++|++|+..+++|.+. +.+-...+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~-Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ-GKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCC-ceEEEEEech
Confidence                   12467889999999999999987533 3555555544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00089  Score=57.14  Aligned_cols=147  Identities=14%  Similarity=0.112  Sum_probs=91.4

Q ss_pred             ecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceee
Q 018806          139 LTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA  217 (350)
Q Consensus       139 ~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (350)
                      +...+...|.+++|||..+- +..++.+.+|+|.|++....                         ...+..+  ..+++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-------------------------vssy~a~--~~~wS  240 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-------------------------VSSYIAY--NQIWS  240 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEeccccee-------------------------eeheecc--CCcee
Confidence            33467888999999998653 45555689999999984332                         2223333  58999


Q ss_pred             EEECCCCCeEEEEEeCCCeEEEEeCCCCCcee--eee--cCCCeEEEE------EcCCCCEEEEEecCCeEEEEeCCCCc
Q 018806          218 LSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRR--GFGGLSILK------WSPTGDYFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~--~~~--~~~~v~~~~------~sp~g~~l~~~~~d~~v~iwd~~~~~  287 (350)
                      ++|.-|..+.++++..+|.|.+||++..+...  +..  ...+|..++      ..+.|.+++....+  +..|++....
T Consensus       241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~  318 (463)
T KOG1645|consen  241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSA  318 (463)
T ss_pred             eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccc
Confidence            99999888887777777999999999764321  111  123333332      23345555554433  4556554322


Q ss_pred             e----eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          288 S----EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       288 ~----~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .    ..-....+.+.++++.+-.+.++.+.
T Consensus       319 ~~~p~vlele~pG~cismqy~~~snh~l~ty  349 (463)
T KOG1645|consen  319 ECLPCVLELEPPGICISMQYHGVSNHLLLTY  349 (463)
T ss_pred             cCCCcccccCCCcceeeeeecCccceEEEEe
Confidence            1    11123355677777777667766654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.58  E-value=0.0052  Score=54.82  Aligned_cols=142  Identities=12%  Similarity=0.049  Sum_probs=81.0

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCC---C------e-eEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---D------V-KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~---~------v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ..++.+..++.+..+|..+  ++..-........   .      + .....  .++.+++++.++.++.+|...++..  
T Consensus       191 ~~v~~~~~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~--  264 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVL--  264 (377)
T ss_pred             CEEEEECCCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEE--
Confidence            3566677778888888743  4332211111000   0      1 11112  2356777777889999998743321  


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-C-CCeEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-F-GGLSI  259 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~-~~v~~  259 (350)
                                            |..-.    .....+.  .++..++.++.+ |.+..+|..+++....... . .....
T Consensus       265 ----------------------W~~~~----~~~~~p~--~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~~~~~~ss  315 (377)
T TIGR03300       265 ----------------------WKRDA----SSYQGPA--VDDNRLYVTDAD-GVVVALDRRSGSELWKNDELKYRQLTA  315 (377)
T ss_pred             ----------------------Eeecc----CCccCce--EeCCEEEEECCC-CeEEEEECCCCcEEEccccccCCcccc
Confidence                                  11000    0111122  245677777777 7999999998876543311 1 12222


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      ...  .+..|++++.+|.|+++|.++++...
T Consensus       316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       316 PAV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             CEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            222  46688899999999999999998853

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.024  Score=48.59  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--CC---ce-eee--ecCCCeEEEEEcCCCCEEEEEecCC-eEEEEeCC
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQ--GL---GT-PIR--RGFGGLSILKWSPTGDYFFAAKFDG-TFYLWETN  284 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--~~---~~-~~~--~~~~~v~~~~~sp~g~~l~~~~~d~-~v~iwd~~  284 (350)
                      ..+.++||||++.++.+-...+.|..|++..  +.   .. ...  ...+..-.++...+|.+.+++..+| .|.+|+.+
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            4568999999998888766545888887762  21   11 111  2346677788888998876555444 89999998


Q ss_pred             CCcee-ccccCCCCeEEEEE-cCCCCEEEEEECCC
Q 018806          285 TWTSE-PWSSTSGFVTGATW-DPEGRMILLAFAGS  317 (350)
Q Consensus       285 ~~~~~-~~~~~~~~v~~~~~-s~~g~~l~~~~~~~  317 (350)
                       ++.. ...-....+++++| .|+.+.|++++...
T Consensus       244 -G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         244 -GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             -CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence             6663 33333367888888 55677777776443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.57  E-value=0.026  Score=47.11  Aligned_cols=153  Identities=21%  Similarity=0.334  Sum_probs=94.0

Q ss_pred             CeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC
Q 018806          146 DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  224 (350)
Q Consensus       146 ~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  224 (350)
                      .+.+.+++++++.+++... ++.-.+|-....+....+..                           ...+...+|++++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---------------------------g~~l~~PS~d~~g   77 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---------------------------GGSLTRPSWDPDG   77 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---------------------------CCccccccccCCC
Confidence            6899999999988887772 33333444343332222111                           2477888999998


Q ss_pred             CeEEEEEeCCCeEEEEe-CCCCCceeee--ec-C-CCeEEEEEcCCCCEEEEEe---cCCeEEEEeCC---CCce-----
Q 018806          225 RYLASASYESSSFTIWD-VAQGLGTPIR--RG-F-GGLSILKWSPTGDYFFAAK---FDGTFYLWETN---TWTS-----  288 (350)
Q Consensus       225 ~~l~~~~~d~g~i~iwd-~~~~~~~~~~--~~-~-~~v~~~~~sp~g~~l~~~~---~d~~v~iwd~~---~~~~-----  288 (350)
                      ...+....+ ...+++. ...+......  .. . +.|..+++||||..+|...   .++.|++--+.   .+..     
T Consensus        78 ~~W~v~~~~-~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~  156 (253)
T PF10647_consen   78 WVWTVDDGS-GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG  156 (253)
T ss_pred             CEEEEEcCC-CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence            777666655 3666663 3444333222  11 1 2899999999999987665   34677776543   2211     


Q ss_pred             -eccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE-EEeC
Q 018806          289 -EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGS-IHFA  326 (350)
Q Consensus       289 -~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~-~~~~  326 (350)
                       ..+. .....+.+++|.+++.+++.+...+..+.. +...
T Consensus       157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d  197 (253)
T PF10647_consen  157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD  197 (253)
T ss_pred             ceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEcc
Confidence             1111 335678999999999988877654444444 4443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.51  E-value=0.0066  Score=58.03  Aligned_cols=97  Identities=13%  Similarity=0.097  Sum_probs=67.9

Q ss_pred             EEEEEeCCCeEEEEeCCCCCc--eeee----ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeE
Q 018806          227 LASASYESSSFTIWDVAQGLG--TPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVT  299 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~~~--~~~~----~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~  299 (350)
                      .+.|-.++ .+..||.+-...  ....    .......|++-+.+| +||+|+.+|.||+||--....+ .+.+.+.+|.
T Consensus       545 tflGls~n-~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDN-SLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCC-ceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCee
Confidence            34455554 899999986432  1111    123457788877777 6899999999999994332223 3456789999


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          300 GATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       300 ~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      .+..+.||+||+++|..-..+....+
T Consensus       623 ~iDvt~DGkwilaTc~tyLlLi~t~~  648 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTYLLLIDTLI  648 (794)
T ss_pred             EEEecCCCcEEEEeecceEEEEEEee
Confidence            99999999999988876555555544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.47  E-value=3.4e-05  Score=69.33  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             CeeEEEEec-CCCEEEEEE----CCCeEEEEEccCC--CCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEec
Q 018806          101 DLQGVSWHQ-HKHIVAFIS----GSTQVIVRDYEDS--EGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  173 (350)
Q Consensus       101 ~V~~v~~sp-~g~~la~~s----~d~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~  173 (350)
                      ..++++|++ |.++||.|-    .|-.+.|||+...  ..+....+..+......+++|-.+.+.++++...+.++++|+
T Consensus       104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl  183 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL  183 (783)
T ss_pred             cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence            688999988 567777763    3667899999653  112222222223445678999977555555556789999999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeC-CCCC-ceee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDV-AQGL-GTPI  250 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~-~~~~-~~~~  250 (350)
                      +........                        +.   ...+..+..+| .+.++++-. | |.|.+||. +.-+ ....
T Consensus       184 Rqs~~~~~s------------------------vn---Tk~vqG~tVdp~~~nY~cs~~-d-g~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  184 RQSLDSVSS------------------------VN---TKYVQGITVDPFSPNYFCSNS-D-GDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             hhhhhhhhh------------------------hh---hhhcccceecCCCCCceeccc-c-CceeeccchhhhccHHHH
Confidence            822111100                        00   13566778888 566666554 6 69999994 3222 1111


Q ss_pred             eec-----CCCeEEEEEcCCCC-EEEEE-ecCCeEEEEeCCC
Q 018806          251 RRG-----FGGLSILKWSPTGD-YFFAA-KFDGTFYLWETNT  285 (350)
Q Consensus       251 ~~~-----~~~v~~~~~sp~g~-~l~~~-~~d~~v~iwd~~~  285 (350)
                      ..+     ...+..++|+|... .+++. -..++|++||+..
T Consensus       235 i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  235 ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            112     13488999999543 34444 4457999999853

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.47  E-value=0.024  Score=46.78  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=80.1

Q ss_pred             CCeEEEEEccCCCCCceeEecCCCCCCeeEEE--EeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCC
Q 018806          120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLE--WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP  197 (350)
Q Consensus       120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  197 (350)
                      +|.|..||..+  ++.+-......  ......  ..++++.++++..++.+..||...++....+.              
T Consensus         2 ~g~l~~~d~~t--G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--------------   63 (238)
T PF13360_consen    2 DGTLSALDPRT--GKELWSYDLGP--GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD--------------   63 (238)
T ss_dssp             TSEEEEEETTT--TEEEEEEECSS--SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE--------------
T ss_pred             CCEEEEEECCC--CCEEEEEECCC--CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee--------------
Confidence            56777777733  55444432211  122222  33355788888888999999987443321111              


Q ss_pred             CCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee-eecC----CCeEEEEEcCCCCEEEEE
Q 018806          198 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGF----GGLSILKWSPTGDYFFAA  272 (350)
Q Consensus       198 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~----~~v~~~~~sp~g~~l~~~  272 (350)
                               +.    ..+.... ..++..+++++.+ +.++.+|..+|+.... ....    ..........++..++++
T Consensus        64 ---------~~----~~~~~~~-~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (238)
T PF13360_consen   64 ---------LP----GPISGAP-VVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG  128 (238)
T ss_dssp             ---------CS----SCGGSGE-EEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE
T ss_pred             ---------cc----cccccee-eecccccccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE
Confidence                     11    1111111 2235566666677 5999999999987665 2221    112223333347888888


Q ss_pred             ecCCeEEEEeCCCCcee
Q 018806          273 KFDGTFYLWETNTWTSE  289 (350)
Q Consensus       273 ~~d~~v~iwd~~~~~~~  289 (350)
                      ..++.|+.+|.++|+..
T Consensus       129 ~~~g~l~~~d~~tG~~~  145 (238)
T PF13360_consen  129 TSSGKLVALDPKTGKLL  145 (238)
T ss_dssp             ETCSEEEEEETTTTEEE
T ss_pred             eccCcEEEEecCCCcEE
Confidence            88999999999999883

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.47  E-value=0.059  Score=48.06  Aligned_cols=205  Identities=15%  Similarity=0.089  Sum_probs=103.8

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccc--
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAA--  187 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--  187 (350)
                      ++..++.++.++.+..+|..+  ++..-...  ..+.+.+.-.. .+..+++...++.++.||...++..........  
T Consensus       104 ~~~~v~v~~~~g~l~ald~~t--G~~~W~~~--~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~  178 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAED--GKELWRAK--LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL  178 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCC--CcEeeeec--cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence            466777888899999998754  55433221  12222221111 235677777789999999875543322211110  


Q ss_pred             ------ccc---ce-ecCCCCCceEEeeeccCCC--------C---Cc---eeeEEECC--CCCeEEEEEeCCCeEEEEe
Q 018806          188 ------SFL---GA-LSRGPGTRWTLVDFLRSQN--------G---EQ---ITALSWGP--DGRYLASASYESSSFTIWD  241 (350)
Q Consensus       188 ------~~~---~~-~~~~~~~~~~~~~~~~~~~--------~---~~---v~~~~~sp--~g~~l~~~~~d~g~i~iwd  241 (350)
                            .+.   .. +....++.+..++.-.+..        .   ..   ...+.-+|  .+..++.++.+ |.++.||
T Consensus       179 ~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g~l~a~d  257 (377)
T TIGR03300       179 TLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-GRVAALD  257 (377)
T ss_pred             eecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-CEEEEEE
Confidence                  000   01 1112223333222211110        0   00   00000111  24567777777 6999999


Q ss_pred             CCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cC-CCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          242 VAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-ST-SGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~-~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                      ..+++........ ....+.  .++..+++++.+|.|+.+|..+++..-.. .. .....+...  .+..|++++. +..
T Consensus       258 ~~tG~~~W~~~~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~-~G~  331 (377)
T TIGR03300       258 LRSGRVLWKRDAS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF-EGY  331 (377)
T ss_pred             CCCCcEEEeeccC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC-CCE
Confidence            9998765543321 111222  24667888888999999999998864211 11 112222222  3556665542 235


Q ss_pred             EEEEEeC
Q 018806          320 LGSIHFA  326 (350)
Q Consensus       320 ~~~~~~~  326 (350)
                      ++.++..
T Consensus       332 l~~~d~~  338 (377)
T TIGR03300       332 LHWLSRE  338 (377)
T ss_pred             EEEEECC
Confidence            5555543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.00041  Score=64.69  Aligned_cols=111  Identities=22%  Similarity=0.233  Sum_probs=81.3

Q ss_pred             ceeeEEECCCCCeEEEEEe---CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          214 QITALSWGPDGRYLASASY---ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~---d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      .-+-.+|+|...+++.++.   ..|.|.||- ++|++..-....-.+.++||+|..-.|+.|-.-|.+.+|...+.+...
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            3455689999999887753   237888884 455544333334456679999998888999999999999998877754


Q ss_pred             c-ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          291 W-SSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       291 ~-~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      . ..|..+|..+.||++|..|+++. -+...+|..+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            3 47889999999999999999875 22344444443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.40  E-value=0.022  Score=40.13  Aligned_cols=66  Identities=12%  Similarity=0.056  Sum_probs=49.3

Q ss_pred             eeEEEEec---CC-CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806          102 LQGVSWHQ---HK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       102 V~~v~~sp---~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      |+++++..   || +-|++|+.|..|++|+-    ...+..+  .....|.++.-... ++++++..+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~----~e~~~Ei--~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG----DEIVAEI--TETDKVTSLCSLGG-GRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC----CcEEEEE--ecccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence            66777654   33 67889999999999995    2333444  24567888887776 788888889999999764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0044  Score=53.83  Aligned_cols=163  Identities=13%  Similarity=0.131  Sum_probs=102.9

Q ss_pred             EEEEE-ECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccc
Q 018806          113 IVAFI-SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG  191 (350)
Q Consensus       113 ~la~~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  191 (350)
                      .||.+ -.++.+.++|-.. +.........-|..+|..+..++.+..+++....|.|.-|..+.   ..++...      
T Consensus       113 ~IAVs~~~sg~i~VvD~~~-d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~---~~qfPr~------  182 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFG-DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG---PFQFPRT------  182 (558)
T ss_pred             eEEeecccCCCcEEECCcC-CcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC---cccCccc------
Confidence            34443 3578899998642 23333444345899999999999987777777789999998872   1111000      


Q ss_pred             eecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee--------------------
Q 018806          192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--------------------  251 (350)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--------------------  251 (350)
                      .+.+..-..-.+....+.  .....++.|+|+|..+.+-+.|. .|++++.++++.....                    
T Consensus       183 ~l~~~~K~eTdLy~f~K~--Kt~pts~Efsp~g~qistl~~Dr-kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V  259 (558)
T KOG0882|consen  183 NLNFELKHETDLYGFPKA--KTEPTSFEFSPDGAQISTLNPDR-KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV  259 (558)
T ss_pred             cccccccccchhhccccc--ccCccceEEccccCcccccCccc-EEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence            000000000011111122  24678999999999999999884 9999999988432111                    


Q ss_pred             -------------ecC-CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          252 -------------RGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       252 -------------~~~-~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                                   .+. ..-..++|...|++|+.++-=| |++.++.++++.
T Consensus       260 elgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  260 ELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV  310 (558)
T ss_pred             ehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence                         011 1234577888899998887655 888888887653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.00042  Score=64.93  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=107.4

Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      ..|....++++|+-+.++++.+...|.|+++++..+.....                         ...|. +.|+-+.-
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------------------------~ncH~-SavT~veP 1151 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------------------------VNCHQ-SAVTLVEP 1151 (1516)
T ss_pred             hccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------------------------ccccc-cccccccc
Confidence            46778899999999988888888899999999985543222                         44554 78999998


Q ss_pred             CCCCCeEEEEEeCCC-eEEEEeCCCC-CceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc-c----c
Q 018806          221 GPDGRYLASASYESS-SFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-S----S  293 (350)
Q Consensus       221 sp~g~~l~~~~~d~g-~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~-~----~  293 (350)
                      +.||..+++.+.-+. -..+|++.+- .....   -..-.++.|+..-++-+.|.......+||++++..... .    +
T Consensus      1152 s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1152 SVDGSTQLTSSSSSSPLSALWDASSTGGPRHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred             cCCcceeeeeccccCchHHHhccccccCcccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh
Confidence            999988877655432 4678998752 11111   23445677877655556666667789999999876321 1    2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       294 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ....-....|+|+.++++--    +-+|+++...
T Consensus      1229 ~~y~~n~a~FsP~D~LIlnd----GvLWDvR~~~ 1258 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLILND----GVLWDVRIPE 1258 (1516)
T ss_pred             hhhhccccccCCCcceEeeC----ceeeeeccHH
Confidence            22233667899999988743    5788887654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.36  E-value=0.065  Score=44.76  Aligned_cols=188  Identities=17%  Similarity=0.176  Sum_probs=101.4

Q ss_pred             cCeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..+.+.+++++|+.+|... .++.-.||-...  +.......  ....+....|++++...++...+...+++.....+.
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            3689999999999888766 223333444432  22222222  234788999999955554444456666664211111


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC--CCeEEEEeCC---CCCce-----
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVA---QGLGT-----  248 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~~---~~~~~-----  248 (350)
                      ...+..                    . ..... ..|..+.+||||..++....+  ++.|.+=-+.   .+...     
T Consensus       100 ~~~~~v--------------------~-~~~~~-~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~  157 (253)
T PF10647_consen  100 GEPVEV--------------------D-WPGLR-GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP  157 (253)
T ss_pred             ceeEEe--------------------c-ccccC-CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence            111100                    0 01111 289999999999999887632  2466665433   22111     


Q ss_pred             -eee-ecCCCeEEEEEcCCCCEEEEEec-CCeEEE-EeCCCCceeccccCCCCeEEEEEcCCCCEEEEE
Q 018806          249 -PIR-RGFGGLSILKWSPTGDYFFAAKF-DGTFYL-WETNTWTSEPWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       249 -~~~-~~~~~v~~~~~sp~g~~l~~~~~-d~~v~i-wd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                       .+. .....+..+.|.+++.+++.+.. ++.+.. .....+....+..-...+..++...+...++..
T Consensus       158 ~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t  226 (253)
T PF10647_consen  158 RRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT  226 (253)
T ss_pred             eEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE
Confidence             111 12357889999999988766654 333433 555554444443222333334444444444444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.30  E-value=0.0092  Score=53.99  Aligned_cols=114  Identities=22%  Similarity=0.331  Sum_probs=74.0

Q ss_pred             eeeEEECCCCCeEEEEEeCCC----eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC-----------CeEE
Q 018806          215 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-----------GTFY  279 (350)
Q Consensus       215 v~~~~~sp~g~~l~~~~~d~g----~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----------~~v~  279 (350)
                      +..+.+||+|++++.+-..+|    +++++|+.+++...-.-.......+.|.++++.|+....+           ..|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            346789999999998754434    6999999999654322111122239999999888666432           2478


Q ss_pred             EEeCCCCcee--ccc-cCC-CC-eEEEEEcCCCCEEEEEE--CCC-eEEEEEEeCCC
Q 018806          280 LWETNTWTSE--PWS-STS-GF-VTGATWDPEGRMILLAF--AGS-LTLGSIHFASK  328 (350)
Q Consensus       280 iwd~~~~~~~--~~~-~~~-~~-v~~~~~s~~g~~l~~~~--~~~-~~~~~~~~~~~  328 (350)
                      .|.+.+....  .+. ... .. ...+..++|+++|++..  ... ..++.++....
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            8888776542  222 222 22 56889999999988765  333 57888887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.27  E-value=0.016  Score=55.56  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee-----CCCeEEEEecCCcEEEEecCCCCCCceeecccccccceec
Q 018806          120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS  194 (350)
Q Consensus       120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  194 (350)
                      ...++-.|+  ..|+.+..+......+|..++-..     +....+.+-.++.+..||.+..+.. .+...         
T Consensus       503 ~~~ly~mDL--e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~---------  570 (794)
T PF08553_consen  503 PNKLYKMDL--ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQ---------  570 (794)
T ss_pred             CCceEEEec--CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeecc---------
Confidence            345555566  457777766543434455443221     1245566777889999999855421 11110         


Q ss_pred             CCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEEEEEcCCCCEEEEEe
Q 018806          195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~  273 (350)
                               ...+.  ......+++-+.+| +||.|+.+ |.||+||--.......+ +-..+|..+..+.||+||++.+
T Consensus       571 ---------~k~Y~--~~~~Fs~~aTt~~G-~iavgs~~-G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc  637 (794)
T PF08553_consen  571 ---------SKQYS--SKNNFSCFATTEDG-YIAVGSNK-GDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC  637 (794)
T ss_pred             ---------ccccc--cCCCceEEEecCCc-eEEEEeCC-CcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence                     01111  12456777777776 78888888 89999995432222222 3467899999999999987655


Q ss_pred             cCCeEEEEeC
Q 018806          274 FDGTFYLWET  283 (350)
Q Consensus       274 ~d~~v~iwd~  283 (350)
                       +..|-+++.
T Consensus       638 -~tyLlLi~t  646 (794)
T PF08553_consen  638 -KTYLLLIDT  646 (794)
T ss_pred             -cceEEEEEE
Confidence             466777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0022  Score=58.08  Aligned_cols=78  Identities=14%  Similarity=0.272  Sum_probs=61.8

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCee-EEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ....+.-+.|+|.-.+||++..+|.+.+..++   .+.+..+. -++..++ +++|.|||+.++++-.||+|++.|++.+
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec---cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            34578899999999999999999999999885   34344442 2556666 9999999877777777999999999966


Q ss_pred             CCC
Q 018806          177 GNA  179 (350)
Q Consensus       177 ~~~  179 (350)
                      ...
T Consensus        95 ~~l   97 (665)
T KOG4640|consen   95 GRL   97 (665)
T ss_pred             Cce
Confidence            544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.25  E-value=0.12  Score=47.17  Aligned_cols=182  Identities=14%  Similarity=0.237  Sum_probs=104.7

Q ss_pred             CeeEEEEecCCCEEEEEE---CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC----CCeEEEEecCCcEEEEec
Q 018806          101 DLQGVSWHQHKHIVAFIS---GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWAP  173 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s---~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~~d~~v~iwd~  173 (350)
                      +|..++|. ||+.++-..   .+|.++.       |.... +  +.-.-|..+.|.|-    ...++++-..+.|.||-+
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kf-------Gds~v-i--GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKF-------GDSKV-I--GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCcccc-------CCccE-e--eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            48889998 676555422   1232222       11111 1  22235899999885    347899999999999998


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCC--CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--e
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--P  249 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~  249 (350)
                      ......                  .++|.+.++.....  .--...+.|+|....|+.-+..+ .=.+++++.....  .
T Consensus        90 ~~s~~e------------------~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVka  150 (671)
T PF15390_consen   90 CPSTTE------------------RNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVKA  150 (671)
T ss_pred             ccCccc------------------cccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEEE
Confidence            722111                  11222222222211  11234688999988888777664 4455666543322  2


Q ss_pred             eeecCCCeEEEEEcCCCCEEEEEecC-CeEEEEeCCCCcee-----ccccCCCCeEEEEEcCCCCEEEEE
Q 018806          250 IRRGFGGLSILKWSPTGDYFFAAKFD-GTFYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       250 ~~~~~~~v~~~~~sp~g~~l~~~~~d-~~v~iwd~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      -....+-|.|.||.+||+.|+++-.. =.-+|||-......     ..+.-.+.|.+|.-.-| ..+|++
T Consensus       151 Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sqVAva  219 (671)
T PF15390_consen  151 DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQVAVA  219 (671)
T ss_pred             eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ceEEEE
Confidence            23456889999999999998766433 25678886554432     23344556666554443 334444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.09  Score=49.82  Aligned_cols=153  Identities=12%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             CEEEEEECCC-----eEEEEEccCCCCCc--eeE----e-c--CC-CCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806          112 HIVAFISGST-----QVIVRDYEDSEGKD--ACI----L-T--SD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       112 ~~la~~s~d~-----~i~iw~~~~~~~~~--~~~----~-~--~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      .+|++.+.|+     .++||+++.-++..  .+.    + .  .+ ...++.+++.+.+-+.++++-.+|.|..+.-+.-
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            5777766543     58999997542222  111    1 1  11 3567889999988555655556799888754311


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-ee-eeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP-IRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~-~~~~~  254 (350)
                      .....                    +......+  ..+|+.+++..+++.++.+..-+ .|.+|.+....+ .. +-.+.
T Consensus       158 RDrgs--------------------r~~~~~~~--~~pITgL~~~~d~~s~lFv~Tt~-~V~~y~l~gr~p~~~~ld~~G  214 (933)
T KOG2114|consen  158 RDRGS--------------------RQDYSHRG--KEPITGLALRSDGKSVLFVATTE-QVMLYSLSGRTPSLKVLDNNG  214 (933)
T ss_pred             hcccc--------------------ceeeeccC--CCCceeeEEecCCceeEEEEecc-eeEEEEecCCCcceeeeccCC
Confidence            11000                    00111122  36999999999988844444443 799999985442 22 22344


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      ..+.|..|++....+++++ +..+++|+.+..+.
T Consensus       215 ~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  215 ISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP  247 (933)
T ss_pred             ccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence            5677888887655455554 45699999875444

>smart00320 WD40 WD40 repeats

Probab=97.11  E-value=0.0017  Score=35.50  Aligned_cols=32  Identities=34%  Similarity=0.695  Sum_probs=28.6

Q ss_pred             eecCCCeEEEEEcCCCCEEEEEecCCeEEEEe
Q 018806          251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  282 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd  282 (350)
                      ..+...+.+++|+++++++++++.|+.+++|+
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35667899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.07  E-value=0.082  Score=46.94  Aligned_cols=153  Identities=15%  Similarity=0.183  Sum_probs=82.5

Q ss_pred             CeeEEEEecCCCEEEEEE-----------CCC-eEEEEEccCCCCCce-eEecCCCCCCeeEEEEeeCCCeEEEEecCCc
Q 018806          101 DLQGVSWHQHKHIVAFIS-----------GST-QVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGG  167 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-----------~d~-~i~iw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  167 (350)
                      ...+|+|.++|+++++-.           ..+ .|.+++-...+++.. .......-.....+++.++|  ++++.....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            367899999999877642           122 566665433334322 12222223456889999886  444433332


Q ss_pred             EEEEecCCCCCCc-eeecccccccceecCCCCCceEEeeeccCC---CCCceeeEEECCCCCeEEEEEeC----------
Q 018806          168 ICIWAPSYPGNAA-SVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALSWGPDGRYLASASYE----------  233 (350)
Q Consensus       168 v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d----------  233 (350)
                      .++.|........ ..                  -.+...+...   .......++|.|||...++.+..          
T Consensus        93 ~~~~d~~gdg~ad~~~------------------~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~  154 (367)
T TIGR02604        93 LFLRDKDGDDKADGER------------------EVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGT  154 (367)
T ss_pred             EEEeCCCCCCCCCCcc------------------EEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCC
Confidence            3333544222111 00                  0011112111   11357789999999776654421          


Q ss_pred             --------CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe
Q 018806          234 --------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       234 --------~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  273 (350)
                              .|.|..++..+++...+.........++|+++|+++++-.
T Consensus       155 ~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       155 SDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                    1356666666555444444445567899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.024  Score=50.69  Aligned_cols=108  Identities=14%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             eeeEEECCCCCe-------EEEEEeCCCeEEEEeCCCCCc--e-eeeec----CCCeEEEEEcCCCCEEEEEecCCeEEE
Q 018806          215 ITALSWGPDGRY-------LASASYESSSFTIWDVAQGLG--T-PIRRG----FGGLSILKWSPTGDYFFAAKFDGTFYL  280 (350)
Q Consensus       215 v~~~~~sp~g~~-------l~~~~~d~g~i~iwd~~~~~~--~-~~~~~----~~~v~~~~~sp~g~~l~~~~~d~~v~i  280 (350)
                      |.-+.+.|+.+.       -+.|-.++ .|.-||.+-...  . ....+    .....|.+-..+| +|++|+.+|.|++
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n-~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRL  455 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDN-SVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRL  455 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCC-ceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEe
Confidence            555566665431       12233453 899999885432  1 12222    2345566655566 7999999999999


Q ss_pred             EeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          281 WETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       281 wd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ||- .+..  ..+.+...+|..+.-+.||++|+.+|..-..+.+..+
T Consensus       456 Ydr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  456 YDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             ehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence            997 4433  3467888999999999999999988876656666555

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.02  E-value=0.18  Score=44.93  Aligned_cols=89  Identities=8%  Similarity=0.019  Sum_probs=46.5

Q ss_pred             eEEEEeCCCCCceeeeecCC--CeEEEEEc-----CCCCEEEEEecCCeEEEEeCCCCceec-cc----cCCCCeEEEEE
Q 018806          236 SFTIWDVAQGLGTPIRRGFG--GLSILKWS-----PTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATW  303 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~--~v~~~~~s-----p~g~~l~~~~~d~~v~iwd~~~~~~~~-~~----~~~~~v~~~~~  303 (350)
                      .++++...+.+...... +.  ....+++-     ..+..|++-..+|.+++|.+..-+... ..    .....+....+
T Consensus       236 ~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             EEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             ceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            78888877665543222 22  22334452     245667888899999999998877632 11    12223456778


Q ss_pred             cCCCCEEEEEECCCeEEEEEEeCC
Q 018806          304 DPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       304 s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +++|..++..+..  .+..+.+|.
T Consensus       315 s~~Gdi~~~~gps--E~~l~sv~~  336 (395)
T PF08596_consen  315 SRNGDIFYWTGPS--EIQLFSVWG  336 (395)
T ss_dssp             -TTS-EEEE-SSS--EEEEEEEES
T ss_pred             CCCCCEEEEeCcc--cEEEEEEEc
Confidence            9999988776543  344444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.98  E-value=0.16  Score=42.04  Aligned_cols=144  Identities=13%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             CeeEEEEeeCCCeEEEEecC-C-cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC
Q 018806          146 DVKVLEWRPNGGRSLSVGCK-G-GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  223 (350)
Q Consensus       146 ~v~~~~~sp~~~~l~~~~~d-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  223 (350)
                      ....++|+|...+-++.... | ...++|......+..+...+                 -+-+.+|       =.||||
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-----------------~RHfyGH-------Gvfs~d  124 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-----------------GRHFYGH-------GVFSPD  124 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-----------------Cceeecc-------cccCCC
Confidence            34457788875555555553 4 45688887555554433321                 1123344       379999


Q ss_pred             CCeEEEEEeC----CCeEEEEeCCCCCce--eeeecCCCeEEEEEcCCCCEEEEEecC------------------CeEE
Q 018806          224 GRYLASASYE----SSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKFD------------------GTFY  279 (350)
Q Consensus       224 g~~l~~~~~d----~g~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~d------------------~~v~  279 (350)
                      |++|+..-+|    .|.|-+||.+.+-..  .+..|.-....+.|.+||+.++.+...                  -++.
T Consensus       125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlv  204 (366)
T COG3490         125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLV  204 (366)
T ss_pred             CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEE
Confidence            9999876433    278999999855322  233344556789999999998766421                  1345


Q ss_pred             EEeCCCCcee---ccc--cCCCCeEEEEEcCCCCEEEEE
Q 018806          280 LWETNTWTSE---PWS--STSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       280 iwd~~~~~~~---~~~--~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      +.|..+|+..   .+.  .+.-.+..++..+||+.++.+
T Consensus       205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            5565566552   222  345678899999999877644

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.89  E-value=0.18  Score=41.20  Aligned_cols=71  Identities=14%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCee-EEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeec
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  184 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  184 (350)
                      -|++++.|...|.+++.++++  +.....+...  +.|. .....++++.+..++.|++.+..|....+...+...
T Consensus        62 vgdfVV~GCy~g~lYfl~~~t--Gs~~w~f~~~--~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKT--GSQIWNFVIL--ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecc--hhheeeeeeh--hhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            567899999999999988854  5433333211  2222 223456767777777799999999886665554433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.88  E-value=0.085  Score=37.21  Aligned_cols=100  Identities=14%  Similarity=0.075  Sum_probs=61.8

Q ss_pred             eeEEEEee---CC-CeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC
Q 018806          147 VKVLEWRP---NG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  222 (350)
Q Consensus       147 v~~~~~sp---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  222 (350)
                      |+++++..   +| ..|++++.|..|++|+-+.                           +...+...  ..|+++.-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------------------------~~~Ei~e~--~~v~~L~~~~   52 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------------------------IVAEITET--DKVTSLCSLG   52 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------------------------EEEEEecc--cceEEEEEcC
Confidence            55666643   33 3577777789999998651                           12222222  4778887766


Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEc-C--CCC-EEEEEecCCeEE
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS-P--TGD-YFFAAKFDGTFY  279 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~s-p--~g~-~l~~~~~d~~v~  279 (350)
                      . ..++++..+ |+|-+|+-...  ......+..+.++++. .  ||. .|++|-.+|.|-
T Consensus        53 ~-~~F~Y~l~N-GTVGvY~~~~R--lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   53 G-GRFAYALAN-GTVGVYDRSQR--LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             C-CEEEEEecC-CEEEEEeCcce--eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5 568888777 89999986432  2223334445555543 3  332 578888888764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.84  E-value=0.24  Score=41.91  Aligned_cols=161  Identities=13%  Similarity=0.063  Sum_probs=88.4

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccc
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      .++.|+.|..+| +.+++...  ........  +...|..+...|+-+ ++..-.|+.++++++..-.............
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~--~~~~~~i~--~~~~I~ql~vl~~~~-~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSD--PSKPTRIL--KLSSITQLSVLPELN-LLLVLSDGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecC--CccceeEe--ecceEEEEEEecccC-EEEEEcCCccEEEEchhhccccccccccccc
Confidence            578899999988 88888832  22223222  334499999999844 4445566999999987332221100000000


Q ss_pred             cceecCCCCCceEEeeeccCCCCCceeeEE--ECCCCCeEEEEEeCCCeEEEEeCCCC--C---ceeeeecCCCeEEEEE
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQITALS--WGPDGRYLASASYESSSFTIWDVAQG--L---GTPIRRGFGGLSILKW  262 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~sp~g~~l~~~~~d~g~i~iwd~~~~--~---~~~~~~~~~~v~~~~~  262 (350)
                              ...  ....+..  ...+..++  -...+...++....+ +|.+|.....  .   ...-..-...+..++|
T Consensus        80 --------~~~--~~~~~~~--~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~  146 (275)
T PF00780_consen   80 --------SRS--LPTKLPE--TKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAF  146 (275)
T ss_pred             --------ccc--ccccccc--cCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEE
Confidence                    000  0000110  12334343  112333344444453 8888877653  2   2222334578889999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCceeccc
Q 018806          263 SPTGDYFFAAKFDGTFYLWETNTWTSEPWS  292 (350)
Q Consensus       263 sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~  292 (350)
                      .  ++.|+.|.. +...+.|+.++....+.
T Consensus       147 ~--~~~i~v~~~-~~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  147 L--GNKICVGTS-KGFYLIDLNTGSPSELL  173 (275)
T ss_pred             e--CCEEEEEeC-CceEEEecCCCCceEEe
Confidence            8  556777764 45889999987765443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=96.83  E-value=0.0042  Score=33.86  Aligned_cols=34  Identities=38%  Similarity=0.847  Sum_probs=28.5

Q ss_pred             eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       206 ~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                      .+..|. ..+.++.|+++++.+++++.+ |.+++|+
T Consensus         7 ~~~~~~-~~i~~~~~~~~~~~~~~~~~d-~~~~~~~   40 (40)
T smart00320        7 TLKGHT-GPVTSVAFSPDGKYLASASDD-GTIKLWD   40 (40)
T ss_pred             EEEecC-CceeEEEECCCCCEEEEecCC-CeEEEcC
Confidence            344554 689999999999999999999 6999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.83  E-value=0.1  Score=43.24  Aligned_cols=160  Identities=18%  Similarity=0.226  Sum_probs=91.5

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      +-...+..++|+|+.+.|+++... +.|..++.. +.....                       -.+.+.  +..-.+++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~-----------------------i~l~g~--~D~EgI~y   72 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR-----------------------IPLDGF--GDYEGITY   72 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE-----------------------EE-SS---SSEEEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE-----------------------EeCCCC--CCceeEEE
Confidence            344569999999998888888775 777666653 221111                       113332  57888999


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCC----ce---eee-----ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC--C
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGL----GT---PIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT--W  286 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~----~~---~~~-----~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~--~  286 (350)
                      ..++.++++.-.+ +.+.++++....    ..   .+.     .++.++-.++|+|.++.|+++-+..-..+|.++.  .
T Consensus        73 ~g~~~~vl~~Er~-~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~  151 (248)
T PF06977_consen   73 LGNGRYVLSEERD-QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG  151 (248)
T ss_dssp             -STTEEEEEETTT-TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred             ECCCEEEEEEcCC-CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence            8877666655445 699999884321    11   111     1345689999999988887777776666666653  1


Q ss_pred             -cee------ccc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          287 -TSE------PWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       287 -~~~------~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                       ...      .+.   .....+.+++++|....|++-++.+..+..++...+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~  203 (248)
T PF06977_consen  152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR  203 (248)
T ss_dssp             SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred             ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence             110      111   233457899999987777777777777777775544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.82  E-value=0.24  Score=43.09  Aligned_cols=110  Identities=15%  Similarity=0.055  Sum_probs=65.2

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC-ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC--Ccee
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT--WTSE  289 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~--~~~~  289 (350)
                      +.|++++-- +++ |+++...  .|.+|++...+ ..........+...+....+.+|++|...+.+.++.++.  .+..
T Consensus        89 g~V~ai~~~-~~~-lv~~~g~--~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~  164 (321)
T PF03178_consen   89 GPVTAICSF-NGR-LVVAVGN--KLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLI  164 (321)
T ss_dssp             S-EEEEEEE-TTE-EEEEETT--EEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred             CcceEhhhh-CCE-EEEeecC--EEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEE
Confidence            678888765 344 5555443  89999999887 444433333333333344466999998888888775543  3232


Q ss_pred             ccc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          290 PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       290 ~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .+.  .....++++.|-++++.++ ++|....++.++...
T Consensus       165 ~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  165 LVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-S
T ss_pred             EEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEECC
Confidence            222  2345688899987777554 555556677776653

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.82  E-value=0.074  Score=49.77  Aligned_cols=99  Identities=19%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee--eecCCCeEEEEEc--CCCCEEEEEecCCeEEEEeCCC----
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--RRGFGGLSILKWS--PTGDYFFAAKFDGTFYLWETNT----  285 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~--~~~~~~v~~~~~s--p~g~~l~~~~~d~~v~iwd~~~----  285 (350)
                      .+.-+.-|.-++.-++-+.. -++.|||.+.+....-  +...+.|..+.|.  |+|+.+++.+..+.|.+|-...    
T Consensus        31 ~~~li~gss~~k~a~V~~~~-~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSR-SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccCcEEEEECCC-CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            44555555544444443334 4999999998875432  2346889999986  6899998888999999985421    


Q ss_pred             -Cce-------eccccCC-CCeEEEEEcCCCCEEEEE
Q 018806          286 -WTS-------EPWSSTS-GFVTGATWDPEGRMILLA  313 (350)
Q Consensus       286 -~~~-------~~~~~~~-~~v~~~~~s~~g~~l~~~  313 (350)
                       ...       ..+..+. .+|.+..|.++|..++.+
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s  146 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS  146 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence             111       1122333 689999999999877644

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.24  Score=41.27  Aligned_cols=195  Identities=11%  Similarity=0.148  Sum_probs=115.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|.++.|+|+.+.|.+..+...-.|+--  .+|+.+..+.-..-...-.+.+.-+|+..++--.++.+.++.+......
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt--~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELT--KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEe--cCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            35999999999999988777766555543  3477666664433344566788777443333333688888887744322


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC-ce--eeee-c--
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GT--PIRR-G--  253 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~-~~--~~~~-~--  253 (350)
                      ..+...              ++. ....... +.....++|+|..+.|..+-..+ -+.||.+.... ..  .... +  
T Consensus       164 ~~~~~~--------------~i~-L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~~  226 (316)
T COG3204         164 ISAKVQ--------------KIP-LGTTNKK-NKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPTA  226 (316)
T ss_pred             Eeccce--------------EEe-ccccCCC-CcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCccc
Confidence            221110              000 1111121 35778999999988888887764 77777665432 11  1111 1  


Q ss_pred             -----CCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCceec--cc-------cCCCCeEEEEEcCCCCEEEEE
Q 018806          254 -----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP--WS-------STSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       254 -----~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~~--~~-------~~~~~v~~~~~s~~g~~l~~~  313 (350)
                           -..+.++.|++. +..++.+.+++.+--.|....-...  +.       ..-...-.++...+|..-+++
T Consensus       227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence                 134677888874 5566777778877777776543221  11       111234567788877766555

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.78  E-value=0.0047  Score=36.25  Aligned_cols=29  Identities=17%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEcc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~  129 (350)
                      .|.+++|+|...+||.++.+|.|.++.++
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            59999999999999999999999999984

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.71  E-value=0.36  Score=42.02  Aligned_cols=144  Identities=18%  Similarity=0.175  Sum_probs=85.0

Q ss_pred             CCEEEEEEC----------CCeEEEEEccCC-C--CCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806          111 KHIVAFISG----------STQVIVRDYEDS-E--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       111 g~~la~~s~----------d~~i~iw~~~~~-~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..+|+.|..          .|.+.++++... .  .+..........++|++++-- + ++ ++++..+.+++|++....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~-lv~~~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GR-LVVAVGNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TE-EEEEETTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CE-EEEeecCEEEEEEccCcc
Confidence            467887753          288999998642 0  121222222457889998866 3 45 555666899999998544


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--CCceeeee--c
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRR--G  253 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--~~~~~~~~--~  253 (350)
                      ....                      ...+..+  ..+.++...  +.+++.+...+ .+.++..+.  .+...+..  .
T Consensus       119 ~l~~----------------------~~~~~~~--~~i~sl~~~--~~~I~vgD~~~-sv~~~~~~~~~~~l~~va~d~~  171 (321)
T PF03178_consen  119 TLLK----------------------KAFYDSP--FYITSLSVF--KNYILVGDAMK-SVSLLRYDEENNKLILVARDYQ  171 (321)
T ss_dssp             SEEE----------------------EEEE-BS--SSEEEEEEE--TTEEEEEESSS-SEEEEEEETTTE-EEEEEEESS
T ss_pred             cchh----------------------hheecce--EEEEEEecc--ccEEEEEEccc-CEEEEEEEccCCEEEEEEecCC
Confidence            1111                      1112221  355555554  55888887764 666664433  22333332  2


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETN  284 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~  284 (350)
                      ...+.++.|-++++.++++..+|.+.++...
T Consensus       172 ~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  172 PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            3558888888777788999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.59  E-value=0.16  Score=41.44  Aligned_cols=86  Identities=15%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeE-EEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccCCCCeEEE
Q 018806          224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGA  301 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~  301 (350)
                      |.+++.+... |.+++.+.++|.....+...+.|. .....+++..+.+++.|++.+..|.++..... .+-..+...+.
T Consensus        63 gdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   63 GDFVVLGCYS-GGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             CCEEEEEEcc-CcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            6778889888 799999999997665554444443 45567899999999999999999999887743 33233334455


Q ss_pred             EEcC-CCCEE
Q 018806          302 TWDP-EGRMI  310 (350)
Q Consensus       302 ~~s~-~g~~l  310 (350)
                      +..| ++...
T Consensus       142 ~i~~g~~sly  151 (354)
T KOG4649|consen  142 VIAPGDGSLY  151 (354)
T ss_pred             eecCCCceEE
Confidence            6666 44433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.49  E-value=0.15  Score=46.54  Aligned_cols=115  Identities=20%  Similarity=0.221  Sum_probs=76.3

Q ss_pred             CceeeEEECCC----CCeEEEEEeCCCeEEEEeCCCC-----Ccee-eeec---CCC--eEEEEEcCCCCEEEEEecCCe
Q 018806          213 EQITALSWGPD----GRYLASASYESSSFTIWDVAQG-----LGTP-IRRG---FGG--LSILKWSPTGDYFFAAKFDGT  277 (350)
Q Consensus       213 ~~v~~~~~sp~----g~~l~~~~~d~g~i~iwd~~~~-----~~~~-~~~~---~~~--v~~~~~sp~g~~l~~~~~d~~  277 (350)
                      +.|..+.|.|-    -..|++.-..+ .|.+|.+...     +... ...+   .-+  ...+.|+|....|++-.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkk-hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKK-HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccc-eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            57899999984    32455555563 9999987622     1111 1111   112  346889999998876665554


Q ss_pred             EEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          278 FYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       278 v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      --+++++....  +.-....+.|.+.+|.+||+.|+++-+....-|.|+-.++
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            44566654333  2223567889999999999999999888888888876654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.47  E-value=0.015  Score=34.15  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETN  284 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~  284 (350)
                      ...|..++|+|...+||.+..+|.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3568899999999999999999999999983

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.39  E-value=0.25  Score=40.95  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             CceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCCCceeeeec-C--CCeEEEEEcCCCCEEEEEec-----CCeEEEEeC
Q 018806          213 EQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPIRRG-F--GGLSILKWSPTGDYFFAAKF-----DGTFYLWET  283 (350)
Q Consensus       213 ~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~--~~v~~~~~sp~g~~l~~~~~-----d~~v~iwd~  283 (350)
                      .....++|+|.- +-++.+-.-.-...++|....+...+... +  ...-.=+|||||.+|...-.     .|.|-|||.
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            345668888864 44556655522467888887765443321 1  22334579999999976543     368999999


Q ss_pred             CCCce--eccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          284 NTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       284 ~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      +.+-.  -.+..|.-....+.|.+||+.|+++.+
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            86543  356677777789999999999998754

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.38  E-value=0.26  Score=43.74  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEE-eCCCC-----Cceeeee--------cCCCeEEEEEcCCCCEEEEEec-----
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIW-DVAQG-----LGTPIRR--------GFGGLSILKWSPTGDYFFAAKF-----  274 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iw-d~~~~-----~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~-----  274 (350)
                      ....+++.++|  |+++...  .|..| |....     +...+..        +......++|.|||.+.++.+.     
T Consensus        73 ~p~Gi~~~~~G--lyV~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~  148 (367)
T TIGR02604        73 MVTGLAVAVGG--VYVATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK  148 (367)
T ss_pred             CccceeEecCC--EEEeCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence            56789999988  4444444  45544 54321     2222221        1234678999999987654431     


Q ss_pred             --------------CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          275 --------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       275 --------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                                    .+.|.-++.++++...+.........++|+++|+++++-.
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                          1456666666665544433334457899999998876543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.38  E-value=0.33  Score=43.63  Aligned_cols=64  Identities=11%  Similarity=0.036  Sum_probs=43.6

Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeec--CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      .+..++.++.+ |.+..+|..+++.......  .....+...  .+..|+.++.+|.|+++|..+|+..
T Consensus       293 ~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        293 DGGRIYLVDQN-DRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             ECCEEEEEcCC-CeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            45677777777 6999999998876442221  111222222  2457788899999999999999874

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.36  E-value=0.57  Score=40.25  Aligned_cols=180  Identities=16%  Similarity=0.209  Sum_probs=96.5

Q ss_pred             EEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceee
Q 018806          105 VSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  183 (350)
Q Consensus       105 v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  183 (350)
                      ..|.++...|+.+. ..+.|.-|+...  +.. ..+  .+.+.+.++..-..+..|+++..  .+.+++.+.......+.
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~--g~~-~~~--~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~  102 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPET--GKK-RVF--PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLA  102 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCc--Cce-EEE--ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEec
Confidence            34667777555544 567777777642  332 222  23445566665555455554433  34556654232211111


Q ss_pred             cccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-----C-----CCeEEEEeCCCCCceeeeec
Q 018806          184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----E-----SSSFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-----d-----~g~i~iwd~~~~~~~~~~~~  253 (350)
                                           ....+......+.....|+|.+.+....     .     .|.++.+|. .+....+...
T Consensus       103 ---------------------~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~  160 (307)
T COG3386         103 ---------------------EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD  160 (307)
T ss_pred             ---------------------cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC
Confidence                                 1112222345677888888887765544     1     144555554 3444444433


Q ss_pred             -CCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCC--Cce---e---ccccCCCCeEEEEEcCCCCEEEEE
Q 018806          254 -FGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTS---E---PWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       254 -~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~--~~~---~---~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                       -.....++||||++.|..+.. .+.|+-|++..  +..   .   .+....+..-.++...+|.+-+.+
T Consensus       161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a  230 (307)
T COG3386         161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA  230 (307)
T ss_pred             cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence             455678999999998877754 57888888763  221   1   111223444556666666665433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.018  Score=55.63  Aligned_cols=102  Identities=14%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCceeee--ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccCCCCeE-
Q 018806          224 GRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVT-  299 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~-  299 (350)
                      +-.++.++.. |.+-..|+...-.....  ...++|.+++|+.+|+.++.|-.+|.|.+||+..++..+ +..+..+.+ 
T Consensus        99 ~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4467777666 78988888764221112  235889999999999999999999999999999988744 334444433 


Q ss_pred             --EEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          300 --GATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       300 --~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                        .+.+..++..++ +++..+.+|..-+..
T Consensus       178 vi~v~~t~~nS~ll-t~D~~Gsf~~lv~nk  206 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLL-TSDTGGSFWKLVFNK  206 (1206)
T ss_pred             EEEEEEeCCCcEEE-EccCCCceEEEEech
Confidence              344455555454 445555677776654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.21  E-value=0.6  Score=39.05  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=101.2

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  221 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  221 (350)
                      +....+.++.|+|+.+.|++......-.|+=...+.....+                       .+.+-  .....+.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-----------------------PL~g~--~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-----------------------PLTGF--SDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-----------------------ccccc--CChhHeEEe
Confidence            34456999999999888888777655444433322222111                       12222  345677887


Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCce--------eee--ec-CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-e
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLGT--------PIR--RG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E  289 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~~--------~~~--~~-~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~  289 (350)
                      .+|++.++--.+ +.+.++.+......        .+.  .+ +.+.-.++|.|..+.|..+-+.+-+.||.+..... .
T Consensus       138 g~n~fvi~dER~-~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERD-RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhc-ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc
Confidence            777777776666 58888776654211        111  12 45678999999999999888888777776654331 1


Q ss_pred             c---cccC-------CCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          290 P---WSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       290 ~---~~~~-------~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      .   ...+       -.-+.++.|.+....|++=++.+..+-+++....+
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            1   1111       23467888988777777666666677777776553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.18  E-value=0.17  Score=47.54  Aligned_cols=118  Identities=17%  Similarity=0.286  Sum_probs=71.6

Q ss_pred             EEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEe--eCCCeEEEEecCCcEEEEecCCCCCCcee
Q 018806          105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCKGGICIWAPSYPGNAASV  182 (350)
Q Consensus       105 v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~v~iwd~~~~~~~~~~  182 (350)
                      +.-|.-++..++-+....+.|||...  +...........+.|.++.|.  |+|+.++++|..+.|.++.-.........
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~--~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRS--GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCC--cEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            33444444444444556789999853  332222222457889999995  78899999999999999865311111100


Q ss_pred             ecccccccceecCCCCCceEEeee--ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          183 RSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                                      ..|..++.  +..++..+|.+..|-++|..++.+  ++ .+.++|-.
T Consensus       113 ----------------p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GN-qlfv~dk~  156 (631)
T PF12234_consen  113 ----------------PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GN-QLFVFDKW  156 (631)
T ss_pred             ----------------cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CC-EEEEECCC
Confidence                            01222221  234444578999999999776654  32 78888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.10  E-value=0.66  Score=38.50  Aligned_cols=190  Identities=13%  Similarity=0.096  Sum_probs=112.2

Q ss_pred             eeEEEEecCCCEEEEEECCC--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.  +++..........----.+....  ..+.--.. ++...+||...-+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~--tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLE--TGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETT--TSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECC--CCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence            56677877888888877766  56666764  46544444323333333444443  45655555 58889999873222


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee---eecC-
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI---RRGF-  254 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~---~~~~-  254 (350)
                                               ...+.-.  +.=+.++  .||+.|+.+...+ .++++|..+.+....   .... 
T Consensus       123 -------------------------~~~~~y~--~EGWGLt--~dg~~Li~SDGS~-~L~~~dP~~f~~~~~i~V~~~g~  172 (264)
T PF05096_consen  123 -------------------------IGTFPYP--GEGWGLT--SDGKRLIMSDGSS-RLYFLDPETFKEVRTIQVTDNGR  172 (264)
T ss_dssp             -------------------------EEEEE-S--SS--EEE--ECSSCEEEE-SSS-EEEEE-TTT-SEEEEEE-EETTE
T ss_pred             -------------------------EEEEecC--CcceEEE--cCCCEEEEECCcc-ceEEECCcccceEEEEEEEECCE
Confidence                                     2222221  2335555  5677887776664 999999887654432   2222 


Q ss_pred             --CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc----------------cCCCCeEEEEEcCCCCEEEEEECC
Q 018806          255 --GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------------STSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       255 --~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~----------------~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                        ..+..+.|- +|...|-.-....|...|..+|++....                ........|||.|....|.+++..
T Consensus       173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence              345667775 7776677767778889999999874311                113467899999988888877644


Q ss_pred             CeEEEEEEeC
Q 018806          317 SLTLGSIHFA  326 (350)
Q Consensus       317 ~~~~~~~~~~  326 (350)
                      =-.++.+++.
T Consensus       252 Wp~lyeV~l~  261 (264)
T PF05096_consen  252 WPKLYEVKLV  261 (264)
T ss_dssp             -SEEEEEEEE
T ss_pred             CCceEEEEEE
Confidence            4577777764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.03  E-value=0.64  Score=39.32  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=79.2

Q ss_pred             CCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC
Q 018806          155 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES  234 (350)
Q Consensus       155 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  234 (350)
                      .+++++.+..+| +.+++.........+..                           ...|..+..-|+-+.+++-+ | 
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~---------------------------~~~I~ql~vl~~~~~llvLs-d-   55 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK---------------------------LSSITQLSVLPELNLLLVLS-D-   55 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee---------------------------cceEEEEEEecccCEEEEEc-C-
Confidence            346677775566 89998832222222111                           13588999988777766654 4 


Q ss_pred             CeEEEEeCCCCCcee---------------eeecCCCeEEEE--EcCCCCEEEEEecCCeEEEEeCCCC-----ceeccc
Q 018806          235 SSFTIWDVAQGLGTP---------------IRRGFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWS  292 (350)
Q Consensus       235 g~i~iwd~~~~~~~~---------------~~~~~~~v~~~~--~sp~g~~l~~~~~d~~v~iwd~~~~-----~~~~~~  292 (350)
                      |.++++++..-....               .......+...+  =...+...++....+.|.+|.....     +...-.
T Consensus        56 ~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~  135 (275)
T PF00780_consen   56 GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI  135 (275)
T ss_pred             CccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE
Confidence            599999987653322               111223444444  1123334444445668888877653     222223


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       293 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      .....+..++|.  ++.|+++..+.-.+.++.
T Consensus       136 ~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~  165 (275)
T PF00780_consen  136 SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN  165 (275)
T ss_pred             EcCCCcEEEEEe--CCEEEEEeCCceEEEecC
Confidence            445788999999  667777765554444433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK10115 protease 2; Provisional

Probab=96.00  E-value=1.7  Score=42.23  Aligned_cols=194  Identities=12%  Similarity=0.067  Sum_probs=98.2

Q ss_pred             CeeEEEEecCCCEEEEEEC-----CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC------CcEE
Q 018806          101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~  169 (350)
                      .+..+.|||||++||.+..     ...+++.|+.+  +..+....   ...-..++|++|++.++++..+      ..|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t--g~~l~~~i---~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET--GNWYPELL---DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC--CCCCCccc---cCcceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            5788899999999998643     23566777743  43222111   1112569999998888887653      2455


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCcee-eEEECCCCCeEEEEEeC--CCeEEEEeCC--C
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYE--SSSFTIWDVA--Q  244 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~~~d--~g~i~iwd~~--~  244 (350)
                      .+++.++.....+                       .+... +.... .+..+.++++++..+..  ++.+.+++..  .
T Consensus       203 ~h~lgt~~~~d~l-----------------------v~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~  258 (686)
T PRK10115        203 RHTIGTPASQDEL-----------------------VYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD  258 (686)
T ss_pred             EEECCCChhHCeE-----------------------EEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC
Confidence            6666543211110                       01111 11222 33345578876654432  1378888853  3


Q ss_pred             CCceeeeecC-CCeEEEEEcCCCCEEEEEecC---CeEEEEeCC-CCceeccccC-C-CCeEEEEEcCCCCEEEEEE--C
Q 018806          245 GLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD---GTFYLWETN-TWTSEPWSST-S-GFVTGATWDPEGRMILLAF--A  315 (350)
Q Consensus       245 ~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d---~~v~iwd~~-~~~~~~~~~~-~-~~v~~~~~s~~g~~l~~~~--~  315 (350)
                      +....+.... +....+. +..+.+.+....+   ..|...++. .++...+..+ . ..+..+.+.  ++.|+...  +
T Consensus       259 ~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~  335 (686)
T PRK10115        259 AEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQR  335 (686)
T ss_pred             CCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeC
Confidence            3333333333 2222222 3233333333222   234444554 2333444444 2 367778877  34554443  4


Q ss_pred             CCeEEEEEEeC
Q 018806          316 GSLTLGSIHFA  326 (350)
Q Consensus       316 ~~~~~~~~~~~  326 (350)
                      +...++.++.+
T Consensus       336 g~~~l~~~~~~  346 (686)
T PRK10115        336 GLTSLRQINRK  346 (686)
T ss_pred             CEEEEEEEcCC
Confidence            55666666654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.91  E-value=0.71  Score=41.47  Aligned_cols=136  Identities=15%  Similarity=0.070  Sum_probs=77.4

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccccccc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      +..++.++.++.+..+|..+  ++..-...  .. ....+.  ..++.+++++.++.+..+|...+...           
T Consensus       256 ~~~vy~~~~~g~l~ald~~t--G~~~W~~~--~~-~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~-----------  317 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRS--GQIVWKRE--YG-SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL-----------  317 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCC--CCEEEeec--CC-CccCcE--EECCEEEEEcCCCeEEEEECCCCcEE-----------
Confidence            44566677888888888754  54332221  11 111222  24567888888899999988743321           


Q ss_pred             ceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-CCCeE-EEEEcCCCCE
Q 018806          191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLS-ILKWSPTGDY  268 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~~~v~-~~~~sp~g~~  268 (350)
                                   |..-... .....+...  .+..|+.++.+ |.+...|..+|+....... ...+. ...+  .+..
T Consensus       318 -------------W~~~~~~-~~~~~sp~v--~~g~l~v~~~~-G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~  378 (394)
T PRK11138        318 -------------WSQSDLL-HRLLTAPVL--YNGYLVVGDSE-GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDK  378 (394)
T ss_pred             -------------EcccccC-CCcccCCEE--ECCEEEEEeCC-CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCE
Confidence                         1100000 011122222  24567777778 7999999999986654332 22232 2222  2447


Q ss_pred             EEEEecCCeEEEEeC
Q 018806          269 FFAAKFDGTFYLWET  283 (350)
Q Consensus       269 l~~~~~d~~v~iwd~  283 (350)
                      |++++.||.|+.++.
T Consensus       379 l~v~t~~G~l~~~~~  393 (394)
T PRK11138        379 LLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEeCCceEEEEeC
Confidence            888899999988764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.79  E-value=0.023  Score=45.23  Aligned_cols=139  Identities=12%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             EEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecC
Q 018806          116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR  195 (350)
Q Consensus       116 ~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  195 (350)
                      ..+.++.++-+++..  -+..+....-+...-.-+.+   +..+++++.+|.|++|+....+........          
T Consensus        35 ~~sa~~~v~~~~~~k--~k~s~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s----------   99 (238)
T KOG2444|consen   35 ATSADGLVRERKVRK--HKESCRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS----------   99 (238)
T ss_pred             cccCCcccccchhhh--hhhhhhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhhc----------
Confidence            346777777777632  11111111112222222223   356778888999999988743332211111          


Q ss_pred             CCCCceEEeeeccCCCCCceee-EEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-C-CCeEEEEEcCCCCEEEEE
Q 018806          196 GPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-F-GGLSILKWSPTGDYFFAA  272 (350)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~-~~v~~~~~sp~g~~l~~~  272 (350)
                                    . ...|.+ +.--.++.+..++..+ |.|+.|++.-.+..-...+ . ..+..+..+..+++++.+
T Consensus       100 --------------~-~e~i~~~Ip~~~~~~~~c~~~~d-g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a  163 (238)
T KOG2444|consen  100 --------------G-EESIDLGIPNGRDSSLGCVGAQD-GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIA  163 (238)
T ss_pred             --------------c-cccceeccccccccceeEEeccC-CceeeeccccCceeeeeccccCCCcceeEEecCCceEEee
Confidence                          0 122222 2222344456666777 7999999988776655543 3 344444555556666666


Q ss_pred             --ecCCeEEEEeCCC
Q 018806          273 --KFDGTFYLWETNT  285 (350)
Q Consensus       273 --~~d~~v~iwd~~~  285 (350)
                        +.|..++.|++..
T Consensus       164 ~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  164 DTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccchhhhhcchhh
Confidence              6677777777754

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.73  E-value=1.3  Score=38.82  Aligned_cols=52  Identities=13%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCC-CceeEe---cCCCCCCeeEEEEeeC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG-KDACIL---TSDSQRDVKVLEWRPN  155 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~-~~~~~~---~~~~~~~v~~~~~sp~  155 (350)
                      .++|+|.|||+++++ ...|.|++++.+ ... ..+...   ..........++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccc
Confidence            578999999987765 679999999832 221 111111   1234567899999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.70  E-value=0.64  Score=41.56  Aligned_cols=136  Identities=12%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             CeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc-eeeccc-------------ccccceecCCCC----CceEEeeec
Q 018806          146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA-SVRSGA-------------ASFLGALSRGPG----TRWTLVDFL  207 (350)
Q Consensus       146 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~----~~~~~~~~~  207 (350)
                      .|+.+.|+++...++++...|.|-||.....+.-. .-....             ......+.....    ..+.....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998888888888999999887432221 000000             001111111111    122333334


Q ss_pred             cCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee---e------cCCCeEEEEEcC-----CC---CEEE
Q 018806          208 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---R------GFGGLSILKWSP-----TG---DYFF  270 (350)
Q Consensus       208 ~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~---~------~~~~v~~~~~sp-----~g---~~l~  270 (350)
                      ... .+.|++++.|. =-+++.+..+ |.+.|.|++........   .      ....+.++.|+.     |+   -.++
T Consensus        83 ~~~-~g~vtal~~S~-iGFvaigy~~-G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAK-QGPVTALKNSD-IGFVAIGYES-GSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ----S-SEEEEEE-B-TSEEEEEETT-SEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ecc-CCcEeEEecCC-CcEEEEEecC-CcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            444 37999999974 4478888877 89999999877544321   1      123577788862     33   3578


Q ss_pred             EEecCCeEEEEeCC
Q 018806          271 AAKFDGTFYLWETN  284 (350)
Q Consensus       271 ~~~~d~~v~iwd~~  284 (350)
                      +|...|.+.+|.+-
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            88889999999774

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.60  E-value=0.68  Score=40.66  Aligned_cols=171  Identities=11%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             CCCCceeEecCCC----CCCeeEEEEeeCCCeEEEEec-C--CcEEEEecCCCCCCceeecccccccceecCCCCCceEE
Q 018806          131 SEGKDACILTSDS----QRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL  203 (350)
Q Consensus       131 ~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (350)
                      .+|..+.+++..+    .--.+.=+|.++|++|+.++. +  ..+++.|+... ...++                     
T Consensus        18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~-~i~QL---------------------   75 (386)
T PF14583_consen   18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG-EITQL---------------------   75 (386)
T ss_dssp             TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT--EEEE----------------------
T ss_pred             CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC-EEEEC---------------------
Confidence            3455555554321    122334467899988888776 5  44555566522 22221                     


Q ss_pred             eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC-CCeEEEEE--cCCCCEEEEEec------
Q 018806          204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKW--SPTGDYFFAAKF------  274 (350)
Q Consensus       204 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~-~~v~~~~~--sp~g~~l~~~~~------  274 (350)
                          ............++|+++.++..-... .++-.|+++.+...+..-. ..+....|  +.|+..++..-.      
T Consensus        76 ----Tdg~g~~~~g~~~s~~~~~~~Yv~~~~-~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~  150 (386)
T PF14583_consen   76 ----TDGPGDNTFGGFLSPDDRALYYVKNGR-SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWK  150 (386)
T ss_dssp             ------SS-B-TTT-EE-TTSSEEEEEETTT-EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG--
T ss_pred             ----ccCCCCCccceEEecCCCeEEEEECCC-eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhcc
Confidence                111112233567789888888766553 8999999998876666543 44444555  456766643311      


Q ss_pred             ----------------CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCE-EEEEECCC-----eEEEEEEeCCC
Q 018806          275 ----------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRM-ILLAFAGS-----LTLGSIHFASK  328 (350)
Q Consensus       275 ----------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~-----~~~~~~~~~~~  328 (350)
                                      ...|.-.|+++|+...+.....++..+.|||.... |++|..+.     .++|.++....
T Consensus       151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             ---SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             CccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence                            13577778999988877777888999999996554 55554332     47888886543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.58  E-value=0.0021  Score=56.52  Aligned_cols=145  Identities=16%  Similarity=0.225  Sum_probs=102.3

Q ss_pred             CCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC
Q 018806          143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  222 (350)
Q Consensus       143 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  222 (350)
                      +-.......|-|.+..++.++.+..+..||-. ++..                           +.....+....++|..
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~---------------------------le~n~tg~aldm~wDk   84 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVI---------------------------LELNPTGKALDMAWDK   84 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhh-ccee---------------------------cccCCchhHhhhhhcc
Confidence            33344566888988888888888888888865 2211                           1111124667888888


Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc-CCCCeEE
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTG  300 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~  300 (350)
                      ++..++......+.+.+||+.+.....+.. ....-.-+.|++-+..++.+...+.+.|++..+.......+ |...+++
T Consensus        85 egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq  164 (615)
T KOG2247|consen   85 EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQ  164 (615)
T ss_pred             ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeE
Confidence            888776665555799999998765443322 22222237899999899988888999999988766655455 8889999


Q ss_pred             EEEcCCCCEEEEEEC
Q 018806          301 ATWDPEGRMILLAFA  315 (350)
Q Consensus       301 ~~~s~~g~~l~~~~~  315 (350)
                      ++|.+.+..+...++
T Consensus       165 ~av~lEd~vil~dcd  179 (615)
T KOG2247|consen  165 IAVTLEDYVILCDCD  179 (615)
T ss_pred             EEecccceeeecCcH
Confidence            999998887765554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.56  E-value=1.4  Score=40.84  Aligned_cols=79  Identities=16%  Similarity=0.059  Sum_probs=45.2

Q ss_pred             CeEEEEeCCCCCceeeeecC---------CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeE--EEEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGF---------GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT--GATW  303 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~---------~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~--~~~~  303 (350)
                      |.+.-.|+.+++.+......         .+...-.....+..|++++.||.|+.+|.++|+..-.......+.  -+.|
T Consensus       366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~  445 (488)
T cd00216         366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTY  445 (488)
T ss_pred             eEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEE
Confidence            57777777777655433222         111111111256688888899999999999999853332223332  2334


Q ss_pred             cCCCCEEEEE
Q 018806          304 DPEGRMILLA  313 (350)
Q Consensus       304 s~~g~~l~~~  313 (350)
                      ..+|+..+..
T Consensus       446 ~~~g~~yv~~  455 (488)
T cd00216         446 EVNGKQYVGV  455 (488)
T ss_pred             EeCCEEEEEE
Confidence            5566554444

The alignment model contains an 8-bladed beta-propeller.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.54  E-value=0.5  Score=42.69  Aligned_cols=136  Identities=13%  Similarity=0.174  Sum_probs=80.4

Q ss_pred             CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-------eEEEEecCCcEEEEecCCCCCCceeeccccccccee
Q 018806          121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-------RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL  193 (350)
Q Consensus       121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  193 (350)
                      ..++-.|+  ..|+.+..+.. +. .|.-+.+.|+.+       .-+.+-+++.|+-||.+..+.....           
T Consensus       356 ~~l~klDI--E~GKIVeEWk~-~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~-----------  420 (644)
T KOG2395|consen  356 DKLYKLDI--ERGKIVEEWKF-ED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA-----------  420 (644)
T ss_pred             Ccceeeec--ccceeeeEeec-cC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee-----------
Confidence            33444455  44666665532 33 377777777632       2345666788999998844431110           


Q ss_pred             cCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-e-eeeecCCCeEEEEEcCCCCEEEE
Q 018806          194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-T-PIRRGFGGLSILKWSPTGDYFFA  271 (350)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~-~~~~~~~~v~~~~~sp~g~~l~~  271 (350)
                             |...+.+...  ....|++-..+| +|+.++.+ |.|++||- .+.. . .+.+-..+|..+..+.+|++|++
T Consensus       421 -------~~q~kqy~~k--~nFsc~aTT~sG-~IvvgS~~-GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  421 -------VVQSKQYSTK--NNFSCFATTESG-YIVVGSLK-GDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             -------eeeccccccc--cccceeeecCCc-eEEEeecC-CcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence                   0001111111  234455554454 78889999 79999997 4432 2 23344578999999999999876


Q ss_pred             EecCCeEEEEeCC
Q 018806          272 AKFDGTFYLWETN  284 (350)
Q Consensus       272 ~~~d~~v~iwd~~  284 (350)
                      .+ +..+.+.++.
T Consensus       489 Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  489 TC-KTYLLLIDTL  500 (644)
T ss_pred             ec-ccEEEEEEEe
Confidence            54 5666666653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.48  E-value=0.82  Score=40.70  Aligned_cols=222  Identities=12%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             eeEEEEecCCCEEEEEE--------------------CCCeEEEEEccCCCCCceeEecCCCCC-CeeEEEEeeC--CCe
Q 018806          102 LQGVSWHQHKHIVAFIS--------------------GSTQVIVRDYEDSEGKDACILTSDSQR-DVKVLEWRPN--GGR  158 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s--------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~--~~~  158 (350)
                      -+.+-|.|..+.+++..                    ....+++||+..  .+....+..+.++ ....++|..+  ...
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~--r~~~Q~idLg~~g~~pLEvRflH~P~~~~  260 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST--RKLLQTIDLGEEGQMPLEVRFLHDPDANY  260 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT--TEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC--CcEeeEEecCCCCCceEEEEecCCCCccc
Confidence            35667788778887743                    235899999954  5555555444333 4668888654  222


Q ss_pred             EEEEec-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCC--CCCceeeEEECCCCCeEEEEEeCCC
Q 018806          159 SLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--NGEQITALSWGPDGRYLASASYESS  235 (350)
Q Consensus       159 l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~g  235 (350)
                      =++++. ..+|..|--...+.- .....     ..+.......|.+-..++..  ...-|++|..|.|.++|+.++.-.|
T Consensus       261 gFvg~aLss~i~~~~k~~~g~W-~a~kV-----i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G  334 (461)
T PF05694_consen  261 GFVGCALSSSIWRFYKDDDGEW-AAEKV-----IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG  334 (461)
T ss_dssp             EEEEEE--EEEEEEEE-ETTEE-EEEEE-----EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTT
T ss_pred             eEEEEeccceEEEEEEcCCCCe-eeeEE-----EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCC
Confidence            222222 344444433211110 00000     00000000001111111110  0246899999999999999988779


Q ss_pred             eEEEEeCCCCCceeeee--------------------cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCC
Q 018806          236 SFTIWDVAQGLGTPIRR--------------------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS  295 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~--------------------~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  295 (350)
                      .|+.||+......++..                    -.+...-+..|.||+.|.+.+.  -..-||-+-.  -......
T Consensus       335 dvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS--Lys~WD~qfY--P~~~~~g  410 (461)
T PF05694_consen  335 DVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS--LYSAWDKQFY--PDGVKNG  410 (461)
T ss_dssp             EEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE------HHHHHHHS--TT-----
T ss_pred             cEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee--cccccccccC--CCccccc
Confidence            99999998764332221                    0123456777888887765431  1111221000  0011223


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC-CCceeecccc
Q 018806          296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVD  340 (350)
Q Consensus       296 ~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~  340 (350)
                      +....+.+.++.--|..     ...+.+++...+. ...+|+....
T Consensus       411 ~~m~~iDvd~~~Ggl~l-----~~~F~VDFg~ep~Gp~raHe~R~p  451 (461)
T PF05694_consen  411 SWMLKIDVDTENGGLTL-----DEDFLVDFGKEPDGPARAHEMRYP  451 (461)
T ss_dssp             -EEEEEEE-TT-S-EEE-----EEEEEEE-TT-----SEEEEEEET
T ss_pred             cEEEEEEecCCCCceee-----CccceecccccccccccceeeecC
Confidence            44556666665222221     3556666665443 3456665543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.35  E-value=1.3  Score=41.91  Aligned_cols=49  Identities=8%  Similarity=0.168  Sum_probs=38.3

Q ss_pred             CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806          121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      -.|+|++..   |.....+...|. .+-.+.|+.+ ..|++...+|++++|++-
T Consensus        64 ~~I~If~~s---G~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   64 PYIRIFNIS---GQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLL  112 (829)
T ss_pred             eeEEEEecc---ccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecc
Confidence            357777764   665555554555 7889999988 899999999999999986

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.59  Score=41.47  Aligned_cols=101  Identities=13%  Similarity=0.119  Sum_probs=70.4

Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee--eee---cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 018806          212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  286 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~--~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~  286 (350)
                      .+.|.++.||+|.+.||.--.++ +|.+++....+...  ...   ....|...+|+.+ .-+|.....| +-+|-....
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~-~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSK-TVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCc-eEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            36999999999999999998885 99999985443322  112   2345889999876 4566555444 566655443


Q ss_pred             ce--eccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          287 TS--EPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       287 ~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      +.  +-...+...|.-..|.++-+.++.+++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            32  445567778888899999887766653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.30  E-value=0.18  Score=40.98  Aligned_cols=64  Identities=22%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             EcCCCCEEEEEecCCeEEEEeCCCCcee-------ccc--------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          262 WSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       262 ~sp~g~~l~~~~~d~~v~iwd~~~~~~~-------~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      +..++++|++.+.+|.+++||+.+++..       ++.        .....|.++.++.+|.-|++-++++.+.|..++
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            4457889999999999999999998862       112        245678999999999988877777777666554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.21  E-value=2.2  Score=38.32  Aligned_cols=157  Identities=15%  Similarity=0.142  Sum_probs=90.1

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCc-eeEecCCCCCCeeEEEEe---e-CCCeEEEEecCCcEEEEecCCCCCCceeecc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKD-ACILTSDSQRDVKVLEWR---P-NGGRSLSVGCKGGICIWAPSYPGNAASVRSG  185 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~-~~~~~~~~~~~v~~~~~s---p-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  185 (350)
                      ...|++||..|.++||+......+. -..+...-..+|..+..-   + .....+++-.-+.+.||.+......  ... 
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~--~~~-  113 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT--VEH-  113 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC--ccc-
Confidence            4689999999999999985432121 122333456788877653   2 2345777778899999998422111  000 


Q ss_pred             cccccceecCCCCCceEEeeeccCCCCCceeeEEECC----C-CCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEE
Q 018806          186 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----D-GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  260 (350)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~-g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~  260 (350)
                                  +..+.+...+..+-......+.+-|    . ..+|..-+.| |.+.+|+-+...........--...+
T Consensus       114 ------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~D-G~L~~feqe~~~f~~~lp~~llPgPl  180 (418)
T PF14727_consen  114 ------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMD-GSLSFFEQESFAFSRFLPDFLLPGPL  180 (418)
T ss_pred             ------------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecC-ceEEEEeCCcEEEEEEcCCCCCCcCe
Confidence                        0112222111111122334444433    2 2456677888 89999997765433333332223346


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeC
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      +|++.-..+++++.+..+.-|..
T Consensus       181 ~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  181 CYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             EEeecCCEEEEecCceeEEEecH
Confidence            77777777888887777777754

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.20  E-value=0.084  Score=42.15  Aligned_cols=106  Identities=12%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCCCCCCceeecccccc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      +..++.|+.+|.|.+|+++.. +....... .-...|.++--.- ++....+++.++.|+.|++...+..          
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~-g~~~d~~~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~----------  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLE-GAHSDRVC-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL----------  137 (238)
T ss_pred             CceEEeecccceEEEecCCcc-chHHHhhh-cccccceeccccccccceeEEeccCCceeeeccccCcee----------
Confidence            356888999999999998632 22111111 1122233322222 2223444555899999998833322          


Q ss_pred             cceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEE--EeCCCeEEEEeCCC
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA--SYESSSFTIWDVAQ  244 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~--~~d~g~i~iwd~~~  244 (350)
                                     .....|...++.....+..++.++++  +.+. .++.|++..
T Consensus       138 ---------------g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~-~~k~W~ve~  178 (238)
T KOG2444|consen  138 ---------------GYVGQHNFESGEELIVVGSDEFLKIADTSHDR-VLKKWNVEK  178 (238)
T ss_pred             ---------------eeeccccCCCcceeEEecCCceEEeeccccch-hhhhcchhh
Confidence                           11222222344445555556666666  6663 777777654

>PRK10115 protease 2; Provisional

Probab=95.18  E-value=1.1  Score=43.43  Aligned_cols=110  Identities=10%  Similarity=0.050  Sum_probs=67.5

Q ss_pred             ceeeEEECCCCCeEEEEEeCCC----eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC------CeEEEEeC
Q 018806          214 QITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------GTFYLWET  283 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g----~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------~~v~iwd~  283 (350)
                      .+..+.|+|||++|+.+...+|    +|++.|+.++....... ...-..++|++|++.|+....+      ..|+.+++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            5677899999999998755433    68899998886322111 1111459999999877665432      36888888


Q ss_pred             CCCc--eeccc-cCCCCeE-EEEEcCCCCEEEEEE-CC-CeEEEEEE
Q 018806          284 NTWT--SEPWS-STSGFVT-GATWDPEGRMILLAF-AG-SLTLGSIH  324 (350)
Q Consensus       284 ~~~~--~~~~~-~~~~~v~-~~~~s~~g~~l~~~~-~~-~~~~~~~~  324 (350)
                      .++.  ...+. ....... .+..+.++++++..+ ++ +..++.+.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~  253 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD  253 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence            8873  22222 2222233 334455898877665 22 23455444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.16  E-value=0.17  Score=49.29  Aligned_cols=65  Identities=14%  Similarity=0.295  Sum_probs=49.3

Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCC---CeEEEEEcCCCCEEEEEecCCe
Q 018806          212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFG---GLSILKWSPTGDYFFAAKFDGT  277 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~---~v~~~~~sp~g~~l~~~~~d~~  277 (350)
                      .++|++++|+.+|+.++.|-.+ |.|.+||+..++..+.. .+..   ++..+.+..++..+.++...|.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~-G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGD-GHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             CCcceeeEecCCCceeccccCC-CcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            4799999999999999999888 89999999998766543 3333   3444555556667777777775

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.99  E-value=0.12  Score=29.39  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCC---CEEEEEecCCeEEEEeCCC
Q 018806          255 GGLSILKWSPTG---DYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       255 ~~v~~~~~sp~g---~~l~~~~~d~~v~iwd~~~  285 (350)
                      +.+.++.|+|..   .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   4788888889999999995

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=2.8  Score=37.51  Aligned_cols=161  Identities=9%  Similarity=0.111  Sum_probs=92.8

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCcee
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  182 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~  182 (350)
                      +.+-|.-..+.| .+...|.+.=|.....+...+..+.....++|.+++||+|.+.++..-.+.+|.+++.. +.++...
T Consensus        26 ngvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLE  103 (657)
T ss_pred             cceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhH
Confidence            444454333433 44555666677765443333333333456799999999996555556668999999885 2222111


Q ss_pred             ecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC--ceeeeecCCCeEEE
Q 018806          183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIRRGFGGLSIL  260 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~--~~~~~~~~~~v~~~  260 (350)
                      ..                    ...+..+ ..|..+.|+.+ .-+|.....  -+.+|.+...+  ...+..+.-.|.-.
T Consensus       104 ~~--------------------~~ck~k~-~~IlGF~W~~s-~e~A~i~~~--G~e~y~v~pekrslRlVks~~~nvnWy  159 (657)
T KOG2377|consen  104 YT--------------------QECKTKN-ANILGFCWTSS-TEIAFITDQ--GIEFYQVLPEKRSLRLVKSHNLNVNWY  159 (657)
T ss_pred             HH--------------------HHhccCc-ceeEEEEEecC-eeEEEEecC--CeEEEEEchhhhhhhhhhhcccCccEE
Confidence            11                    0111222 46888999876 566666555  36666554432  33344566778888


Q ss_pred             EEcCCCCEEEEEe--cCCeEEEEeCCCCcee
Q 018806          261 KWSPTGDYFFAAK--FDGTFYLWETNTWTSE  289 (350)
Q Consensus       261 ~~sp~g~~l~~~~--~d~~v~iwd~~~~~~~  289 (350)
                      .|+++-+.+..++  ..+++.=+.++++...
T Consensus       160 ~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~  190 (657)
T KOG2377|consen  160 MYCPETAVILLSTTVLENVLNPFHFRAGTMS  190 (657)
T ss_pred             EEccccceEeeeccccccccccEEEeeceee
Confidence            8898877654332  3455555555555443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.79  E-value=2.9  Score=37.42  Aligned_cols=185  Identities=12%  Similarity=0.063  Sum_probs=79.8

Q ss_pred             eEEEEecCCCEEEEEE--C----CCeEEEEEccCCCCCceeEecCC--CCCCeeEEEEeeCCCeEEEEe-----------
Q 018806          103 QGVSWHQHKHIVAFIS--G----STQVIVRDYEDSEGKDACILTSD--SQRDVKVLEWRPNGGRSLSVG-----------  163 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s--~----d~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-----------  163 (350)
                      ..+-.-|+|+.++++-  .    -|.+.++|-++  ..........  ....-..+-|.|.-+.++++.           
T Consensus       133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t--f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf  210 (461)
T PF05694_consen  133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGET--FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGF  210 (461)
T ss_dssp             EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT--
T ss_pred             ceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc--ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCC
Confidence            3344457898888853  2    24455666532  3333333221  223445677778755566542           


Q ss_pred             ---------cCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC--CCCeEEE-EE
Q 018806          164 ---------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLAS-AS  231 (350)
Q Consensus       164 ---------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~-~~  231 (350)
                               ...++.+||+...+..+.+.-+.                        .......+.|..  +..+=++ +.
T Consensus       211 ~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~------------------------~g~~pLEvRflH~P~~~~gFvg~a  266 (461)
T PF05694_consen  211 NPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE------------------------EGQMPLEVRFLHDPDANYGFVGCA  266 (461)
T ss_dssp             -TTTHHHH-S--EEEEEETTTTEEEEEEES-T------------------------TEEEEEEEEE-SSTT--EEEEEEE
T ss_pred             ChhHhhcccccCeEEEEECCCCcEeeEEecCC------------------------CCCceEEEEecCCCCccceEEEEe
Confidence                     12579999998555444433321                        112344555543  3333322 33


Q ss_pred             eCCCeEEEEeC-CCCCce-----eeeec-----------------CCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCc
Q 018806          232 YESSSFTIWDV-AQGLGT-----PIRRG-----------------FGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT  287 (350)
Q Consensus       232 ~d~g~i~iwd~-~~~~~~-----~~~~~-----------------~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~  287 (350)
                      .. .+|..|-- ..++..     .+-..                 ..-++.+.+|.|.++|.++. .+|.|+.||+....
T Consensus       267 Ls-s~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  267 LS-SSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cc-ceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            33 35555533 333211     11000                 23368899999999996554 58999999998754


Q ss_pred             eeccc--------------------cCCCCeEEEEEcCCCCEEEEEE
Q 018806          288 SEPWS--------------------STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       288 ~~~~~--------------------~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .-.+.                    .-.+...-+..|.||+.|+++.
T Consensus       346 ~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  346 NPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             S-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            31111                    0122346788999999999884

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.70  E-value=0.14  Score=29.17  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=24.4

Q ss_pred             CCeeEEEEeeCCC--eEEEEecC-CcEEEEecCC
Q 018806          145 RDVKVLEWRPNGG--RSLSVGCK-GGICIWAPSY  175 (350)
Q Consensus       145 ~~v~~~~~sp~~~--~l~~~~~d-~~v~iwd~~~  175 (350)
                      +.|.+++|+|+..  .|++-+.+ +.|.|+|++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998755  56666665 9999999983

It contains a characteristic DLL sequence motif.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.69  E-value=3.3  Score=37.69  Aligned_cols=54  Identities=13%  Similarity=0.179  Sum_probs=35.0

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe----cCCCCCCeeEEEEeeC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL----TSDSQRDVKVLEWRPN  155 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~  155 (350)
                      -+.|+|.|||++|++--..|.|++++...........+    .....+....|+++|+
T Consensus        32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            68899999998887654469998887543221111111    1113567899999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.64  E-value=0.0065  Score=53.64  Aligned_cols=135  Identities=15%  Similarity=0.210  Sum_probs=95.3

Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCcee
Q 018806          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV  182 (350)
Q Consensus       104 ~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~  182 (350)
                      ...|-|.+.-++.++.+..+..||-.   ++.....  ...+....++|.-+|..++.... .+.+.+||+. .+..+++
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a---gq~~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n-~eytqqL  112 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA---GQVILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN-SEYTQQL  112 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh---cceeccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhh-hhhHHHH
Confidence            34677777778888888888888853   4332322  34567788999888877776666 4999999998 3343333


Q ss_pred             ecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEE
Q 018806          183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILK  261 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~  261 (350)
                      ..+.                       .  ..-.-+.|++.+..++.+... |.+.+++..+.......+ |...+.+++
T Consensus       113 E~gg-----------------------~--~s~sll~wsKg~~el~ig~~~-gn~viynhgtsR~iiv~Gkh~RRgtq~a  166 (615)
T KOG2247|consen  113 ESGG-----------------------T--SSKSLLAWSKGTPELVIGNNA-GNIVIYNHGTSRRIIVMGKHQRRGTQIA  166 (615)
T ss_pred             hccC-----------------------c--chHHHHhhccCCccccccccc-cceEEEeccchhhhhhhcccccceeEEE
Confidence            3321                       1  111227888888888888777 799999988877666666 778899999


Q ss_pred             EcCCCCEEE
Q 018806          262 WSPTGDYFF  270 (350)
Q Consensus       262 ~sp~g~~l~  270 (350)
                      |.+.+..+.
T Consensus       167 v~lEd~vil  175 (615)
T KOG2247|consen  167 VTLEDYVIL  175 (615)
T ss_pred             ecccceeee
Confidence            998875443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.61  E-value=2.6  Score=36.13  Aligned_cols=167  Identities=17%  Similarity=0.295  Sum_probs=81.3

Q ss_pred             EECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEE-EEecCCCCCCceeecccccccceecC
Q 018806          117 ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGNAASVRSGAASFLGALSR  195 (350)
Q Consensus       117 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~  195 (350)
                      ++..|.  ||.-.. .++.-..+...-.+.+..+.-++|| .+++++..|.+. -||-..  .                 
T Consensus       120 ~~~~G~--iy~T~D-gG~tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--~-----------------  176 (302)
T PF14870_consen  120 AGDRGA--IYRTTD-GGKTWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--T-----------------  176 (302)
T ss_dssp             EETT----EEEESS-TTSSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---S-----------------
T ss_pred             EcCCCc--EEEeCC-CCCCeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--c-----------------
Confidence            344454  444432 2443344334556789999989996 466666666554 555431  1                 


Q ss_pred             CCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC-CCc-----eeeeecCCCeEEEEEcCCCCEE
Q 018806          196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLG-----TPIRRGFGGLSILKWSPTGDYF  269 (350)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~-~~~-----~~~~~~~~~v~~~~~sp~g~~l  269 (350)
                          .|......   ....|.++.|+|++...+.+ .. |.|+.=+... ...     ..+......+..++|.+++...
T Consensus       177 ----~w~~~~r~---~~~riq~~gf~~~~~lw~~~-~G-g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~w  247 (302)
T PF14870_consen  177 ----TWQPHNRN---SSRRIQSMGFSPDGNLWMLA-RG-GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIW  247 (302)
T ss_dssp             ----S-EEEE-----SSS-EEEEEE-TTS-EEEEE-TT-TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EE
T ss_pred             ----cceEEccC---ccceehhceecCCCCEEEEe-CC-cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEE
Confidence                12222211   23689999999998776654 55 6887776221 111     1111122458899999998777


Q ss_pred             EEEecCCeEEEEeCCCCce-ec---cccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          270 FAAKFDGTFYLWETNTWTS-EP---WSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       270 ~~~~~d~~v~iwd~~~~~~-~~---~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ++|+ .|.+ +...+.|+. ++   .......++.+.|..+.+-++.|.++-
T Consensus       248 a~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~  297 (302)
T PF14870_consen  248 AVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV  297 (302)
T ss_dssp             EEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred             EEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence            7665 4433 445555654 22   123345688999987777777775543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.56  E-value=2.1  Score=34.75  Aligned_cols=142  Identities=8%  Similarity=0.013  Sum_probs=77.4

Q ss_pred             CeeEEEEecCCCEEEEEEC----------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEE
Q 018806          101 DLQGVSWHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~  169 (350)
                      ..+.-..+|+|++.+ |..          .|.++.|-..    ..+..+. ..-+--+.++|+.+.+.+.+..+ +-+|.
T Consensus       110 R~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~----h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG----HQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             ccccCccCCCCceee-eeeccccccccccccEEEEeccC----CCceeee-hhccCCccccccccCcEEEEEccCceEEe
Confidence            455666789999844 322          2445555542    1112221 22334467899988666666555 57787


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      -||.+.+.-...-...              -+.+.+ .+....-..-.++...+|...+++-.. |+|...|..+|+...
T Consensus       184 a~dyd~~tG~~snr~~--------------i~dlrk-~~~~e~~~PDGm~ID~eG~L~Va~~ng-~~V~~~dp~tGK~L~  247 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKV--------------IFDLRK-SQPFESLEPDGMTIDTEGNLYVATFNG-GTVQKVDPTTGKILL  247 (310)
T ss_pred             eeecCCCcccccCcce--------------eEEecc-CCCcCCCCCCcceEccCCcEEEEEecC-cEEEEECCCCCcEEE
Confidence            7886532211000000              000111 011000122345556677777766666 799999999998765


Q ss_pred             -eeecCCCeEEEEEcC
Q 018806          250 -IRRGFGGLSILKWSP  264 (350)
Q Consensus       250 -~~~~~~~v~~~~~sp  264 (350)
                       +.-....++++||--
T Consensus       248 eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  248 EIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEEcCCCceEEEEecC
Confidence             334567899999963

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.47  E-value=1.7  Score=42.11  Aligned_cols=73  Identities=15%  Similarity=0.288  Sum_probs=51.7

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCC----------CCc----eeee--------ecCCCeEEEEEcCC---CC
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----------GLG----TPIR--------RGFGGLSILKWSPT---GD  267 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~----------~~~----~~~~--------~~~~~v~~~~~sp~---g~  267 (350)
                      ..|..+.++|+|++++..+.. | |.|..+..          ++.    ..+.        .....|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~-~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPR-G-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCC-c-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            578999999999999999887 3 44444421          111    1110        12246889999996   57


Q ss_pred             EEEEEecCCeEEEEeCCCCc
Q 018806          268 YFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       268 ~l~~~~~d~~v~iwd~~~~~  287 (350)
                      .|++-..|+++++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            89888999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.47  E-value=2.8  Score=35.92  Aligned_cols=102  Identities=20%  Similarity=0.350  Sum_probs=58.7

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeC-CCCce--
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTS--  288 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~-~~~~~--  288 (350)
                      +.+..+.-++||++++++...+ ...-||--...-... ......+..+.|+|++...+.+ ..|.|++=+. ...+.  
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~-~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGN-FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSS-EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             ceeEeEEECCCCcEEEEECccc-EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            6788899999999988886653 556777543333332 2345789999999998876654 7888888772 22221  


Q ss_pred             ---eccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          289 ---EPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       289 ---~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                         .........+.+++|.+++...++++++
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence               1122233458999999998888876554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=0.95  Score=44.83  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             CceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          213 EQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       213 ~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      ....++.|.|.-. ..+....| +.|++..+........ ..-....++++|+|.|+.++.|...|++.-|-..-.....
T Consensus       156 vf~~~~~wnP~vp~n~av~l~d-lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~  234 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSD-LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE  234 (1405)
T ss_pred             cccccccccCCccchhhhhccc-cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence            3556788888633 33444455 5788776654322221 2234568899999999999999999999888654322211


Q ss_pred             cc----cCCCCeEEEEEcCCCCEEEEEE
Q 018806          291 WS----STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       291 ~~----~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +.    .....|.++.|-....+|++-.
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEec
Confidence            11    2257899999988888877654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.08  E-value=2.5  Score=33.86  Aligned_cols=162  Identities=10%  Similarity=0.068  Sum_probs=83.7

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---C---cEEEE-ecCCC-CCCceee
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---G---GICIW-APSYP-GNAASVR  183 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~---~v~iw-d~~~~-~~~~~~~  183 (350)
                      +.|..+...+.|.+|++........+.+  .--+.|..+.++..|.++++.-.+   .   .+|+| |.+.. .....+.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            4554556778899999974334444444  345789999999999999887654   2   45655 22211 1111111


Q ss_pred             --cccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc----eeee------
Q 018806          184 --SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIR------  251 (350)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~----~~~~------  251 (350)
                        -..................+   +.-.....+.+++..|-.-.|+.++.+  ++.+|.+.....    ..+.      
T Consensus       107 vRiaG~~v~~~~~~~~~~qlei---iElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~~~~~~~~lDFe~~l  181 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEI---IELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTIQSEKFSFLDFERSL  181 (215)
T ss_pred             EEEcccccccCCCCccccceEE---EEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEEecccccEEechhhh
Confidence              00000000011111111222   222223578899999865556666555  799997764422    0111      


Q ss_pred             -ecC--CCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          252 -RGF--GGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       252 -~~~--~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                       .+.  -.+..+++.  +.++|..+ +..++++.+
T Consensus       182 ~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  182 IDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             hheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence             111  123445553  45777665 555666654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.99  E-value=0.46  Score=46.88  Aligned_cols=146  Identities=12%  Similarity=0.113  Sum_probs=87.8

Q ss_pred             ccCeeEEEEecCCCEEEEEE--CCCeEEEEEccCCCCCc--eeE------ecCCCCCCeeEEEEeeCCC-eEEEEecCCc
Q 018806           99 EVDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKD--ACI------LTSDSQRDVKVLEWRPNGG-RSLSVGCKGG  167 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s--~d~~i~iw~~~~~~~~~--~~~------~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~  167 (350)
                      ..++..+..++|++..++..  ++-.|..||+..-....  ...      ..........++.|+|.-. ..++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44677778888887666543  34477788875321111  001      1112234567788887632 3455566788


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      |++..+........                        .+  ......++++|+|.|+.++.+-.. |++.-|-..-...
T Consensus       180 l~V~~~~~~~~~v~------------------------s~--p~t~~~Tav~WSprGKQl~iG~nn-Gt~vQy~P~leik  232 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVT------------------------SF--PVTNSQTAVLWSPRGKQLFIGRNN-GTEVQYEPSLEIK  232 (1405)
T ss_pred             hhhhhhhhhhhhhc------------------------cc--CcccceeeEEeccccceeeEecCC-CeEEEeeccccee
Confidence            88876652211100                        00  112578999999999999999888 7998886543322


Q ss_pred             eeeee----cCCCeEEEEEcCCCCEEEE
Q 018806          248 TPIRR----GFGGLSILKWSPTGDYFFA  271 (350)
Q Consensus       248 ~~~~~----~~~~v~~~~~sp~g~~l~~  271 (350)
                      ..+..    ....|.+++|-....++++
T Consensus       233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  233 SEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ecccCCCcCCCcceeEEEEecceeEEEE
Confidence            22211    2467999999887777754

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.91  E-value=2.4  Score=38.48  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=47.9

Q ss_pred             CCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          265 TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       265 ~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..-++|+++..|.|++||--.... ..+.+.+..|..+..+.+|++|+++|..-..+..+.+.
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik  634 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK  634 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence            345899999999999999654443 34667778899999999999999888766666665554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.79  E-value=6.7  Score=37.72  Aligned_cols=110  Identities=7%  Similarity=-0.058  Sum_probs=64.2

Q ss_pred             ceeeEEECC--CCCeEEEEEeCCCeEEEEeCCCC--------------C------ceeeeecCCCeEEEEEc--CCCCEE
Q 018806          214 QITALSWGP--DGRYLASASYESSSFTIWDVAQG--------------L------GTPIRRGFGGLSILKWS--PTGDYF  269 (350)
Q Consensus       214 ~v~~~~~sp--~g~~l~~~~~d~g~i~iwd~~~~--------------~------~~~~~~~~~~v~~~~~s--p~g~~l  269 (350)
                      .|..+...-  +...|+.+..| |.|.+|.++.-              .      +.....-...+++++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~Dd-G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDD-GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecC-CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            456665544  23455556555 89999965210              0      11122234568889998  778888


Q ss_pred             EEEecCCeEEEEeCCCCce----eccccCCCCeEEEEEcCCC-----C-EEEEEECCCeEEEEEEe
Q 018806          270 FAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG-----R-MILLAFAGSLTLGSIHF  325 (350)
Q Consensus       270 ~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~s~~g-----~-~l~~~~~~~~~~~~~~~  325 (350)
                      |+++....|.||-+...+.    .....+...|-+++|-++.     . +|++++ =.+.++.+++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence            8888888787776544221    1222456678889987654     2 444444 3334555555

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.78  E-value=0.53  Score=38.34  Aligned_cols=67  Identities=13%  Similarity=0.291  Sum_probs=49.2

Q ss_pred             ECCCCCeEEEEEeCCCeEEEEeCCCCCce-------eee--------ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCC
Q 018806          220 WGPDGRYLASASYESSSFTIWDVAQGLGT-------PIR--------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  284 (350)
Q Consensus       220 ~sp~g~~l~~~~~d~g~i~iwd~~~~~~~-------~~~--------~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~  284 (350)
                      +..++.+|++.+.+ |.+++||+.+++..       ++.        .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~-G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSS-GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCC-CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            34568889998889 89999999987542       112        2345688889998998777665 5788999876


Q ss_pred             CCce
Q 018806          285 TWTS  288 (350)
Q Consensus       285 ~~~~  288 (350)
                      -+.-
T Consensus        96 L~~W   99 (219)
T PF07569_consen   96 LGCW   99 (219)
T ss_pred             ccee
Confidence            6544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.75  E-value=0.86  Score=44.05  Aligned_cols=85  Identities=19%  Similarity=0.335  Sum_probs=59.1

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCC---C-----CC--ceeEec--------CCCCCCeeEEEEeeC---CC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---E-----GK--DACILT--------SDSQRDVKVLEWRPN---GG  157 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~---~-----~~--~~~~~~--------~~~~~~v~~~~~sp~---~~  157 (350)
                      .+.|..|.+||+|++||..+..| |.|..+...   .     ++  ..+...        ..+...|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            46899999999999999988766 445554211   0     11  122111        134457899999997   47


Q ss_pred             eEEEEecCCcEEEEecCCCCCCceeec
Q 018806          158 RSLSVGCKGGICIWAPSYPGNAASVRS  184 (350)
Q Consensus       158 ~l~~~~~d~~v~iwd~~~~~~~~~~~~  184 (350)
                      ++++-.+|+++++||+.....+..+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            899999999999999986665555433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.73  E-value=5.1  Score=36.21  Aligned_cols=68  Identities=9%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee--cCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      +++..++.||+|+++|.-..+ |.+.+.+..-.+......  .......+.|+-+...++.-  ...|.+...
T Consensus       217 ~~i~~iavSpng~~iAl~t~~-g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~  286 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDS-GNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP  286 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECC-CCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence            579999999999999988877 799888765443332222  23567788888765433332  455666653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.70  E-value=0.44  Score=26.82  Aligned_cols=41  Identities=20%  Similarity=0.042  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEE
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW  262 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~  262 (350)
                      |++++|+++....++|.++|..+++......-......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            67888888776557999999987765543333333444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.10  E-value=0.89  Score=40.40  Aligned_cols=164  Identities=13%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCC----Cee-EEEEeeCCCeEEEEecCCcEEEE-ec
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR----DVK-VLEWRPNGGRSLSVGCKGGICIW-AP  173 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~----~v~-~~~~sp~~~~l~~~~~d~~v~iw-d~  173 (350)
                      .+|..+-..|||++|..-+. ..+.++++....-+. ..+.....+    .|+ .+..-..|..+++...||-|.-| |+
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-RKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccch-hhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence            36888899999999887655 678888886432211 122111111    122 22222334567777788877666 55


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~  253 (350)
                      .....+..                    ...+.++-. ...+..+.-..+.+-+++-... |++..+.....+.......
T Consensus       299 r~~~~p~l--------------------~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~-G~L~~f~st~~~~lL~~~~  356 (733)
T COG4590         299 RRDGQPHL--------------------NHIRNFKLA-PAEVQFLLPETNRKGFYSLYRN-GTLQSFYSTSEKLLLFERA  356 (733)
T ss_pred             ecCCCCcc--------------------eeeeccccC-cccceeeccccccceEEEEcCC-CceeeeecccCcceehhhh
Confidence            43322111                    111111111 1233333322333445555555 6887776554443333333


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      ...+.-+++||.+.++++- +.|.++++.+++...
T Consensus       357 ~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         357 YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             hcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence            3467778999999988764 357799998887654

>PRK13684 Ycf48-like protein; Provisional

Probab=92.76  E-value=6.3  Score=34.51  Aligned_cols=152  Identities=13%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+.++.+.|++.+++++ ..|.+.. ..+ ..++.-..........++++.+.++++ ++.++..|.+.+=..+ .+.  
T Consensus       174 ~~~~i~~~~~g~~v~~g-~~G~i~~-s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~G~~~~~s~d-~G~--  246 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVS-SRGNFYS-TWE-PGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARGGQIRFNDPD-DLE--  246 (334)
T ss_pred             eEEEEEECCCCeEEEEe-CCceEEE-EcC-CCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecCCEEEEccCC-CCC--
Confidence            57889999998777654 4554432 111 112222333334456899999999854 5556666766432222 111  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeee---ecCCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR---RGFGG  256 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~---~~~~~  256 (350)
                                         .|.....-.......+.++.+.++++.+++ +.+ |.+. .....++. ....   .-...
T Consensus       247 -------------------sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~-G~v~-~S~d~G~tW~~~~~~~~~~~~  304 (334)
T PRK13684        247 -------------------SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGN-GTLL-VSKDGGKTWEKDPVGEEVPSN  304 (334)
T ss_pred             -------------------ccccccCCccccccceeeEEEcCCCCEEEE-cCC-CeEE-EeCCCCCCCeECCcCCCCCcc
Confidence                               111110000001135788899998775554 455 5554 34444432 2221   11235


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEe
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWE  282 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd  282 (350)
                      ...+.|..+++.+++| ..|.|-.|+
T Consensus       305 ~~~~~~~~~~~~~~~G-~~G~il~~~  329 (334)
T PRK13684        305 FYKIVFLDPEKGFVLG-QRGVLLRYV  329 (334)
T ss_pred             eEEEEEeCCCceEEEC-CCceEEEec
Confidence            7778887776666654 567776554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.68  E-value=9.3  Score=36.25  Aligned_cols=152  Identities=16%  Similarity=0.129  Sum_probs=78.8

Q ss_pred             cCCCEEEEEECC------CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC------CcEEEEecCCC
Q 018806          109 QHKHIVAFISGS------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICIWAPSYP  176 (350)
Q Consensus       109 p~g~~la~~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~iwd~~~~  176 (350)
                      ..+.+++.|+..      ..+..+|...+...  ..........-.+++...+ ..++++|.+      .++..||....
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~--~~a~m~~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS--SLAPMPSPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEe--ecCCCCcccccccEEEECC-EEEEEccccCCCcccceEEEecCCCC
Confidence            345677777766      35667777542211  1111123344555565544 566666666      34556665522


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC-----eEEEEeCCCCCceeee
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-----SFTIWDVAQGLGTPIR  251 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g-----~i~iwd~~~~~~~~~~  251 (350)
                                             .|.....+.... .......  -+|...+.|+.+ |     ++..||..+.+.....
T Consensus       360 -----------------------~W~~~a~M~~~R-~~~~v~~--l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va  412 (571)
T KOG4441|consen  360 -----------------------QWTPVAPMNTKR-SDFGVAV--LDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVA  412 (571)
T ss_pred             -----------------------ceeccCCccCcc-ccceeEE--ECCEEEEEeccc-cccccccEEEecCCCCcccccC
Confidence                                   222222222211 1111111  256777777776 4     5888998877654433


Q ss_pred             ecCCCeEEEEE-cCCCCEEEEEecCC------eEEEEeCCCCceec
Q 018806          252 RGFGGLSILKW-SPTGDYFFAAKFDG------TFYLWETNTWTSEP  290 (350)
Q Consensus       252 ~~~~~v~~~~~-sp~g~~l~~~~~d~------~v~iwd~~~~~~~~  290 (350)
                      .........+. .-+|+..++|+.++      ++..||..+.+-..
T Consensus       413 ~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~  458 (571)
T KOG4441|consen  413 PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL  458 (571)
T ss_pred             CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence            22222222221 23677777777543      68889998877643

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.58  E-value=0.61  Score=25.87  Aligned_cols=28  Identities=32%  Similarity=0.682  Sum_probs=21.4

Q ss_pred             CceeeEEECCCCCeEEEEEeCC--CeEEEE
Q 018806          213 EQITALSWGPDGRYLASASYES--SSFTIW  240 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~--g~i~iw  240 (350)
                      +......|||||+.|+.++...  |...||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4678899999999999998775  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.49  E-value=6.8  Score=34.19  Aligned_cols=173  Identities=20%  Similarity=0.299  Sum_probs=94.4

Q ss_pred             CCCeeEEEEeeCCCeEEEEecCCc------EEEEecCCC-CCCceeecccccccceecCCCCCceEEeeeccCCCCCcee
Q 018806          144 QRDVKVLEWRPNGGRSLSVGCKGG------ICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT  216 (350)
Q Consensus       144 ~~~v~~~~~sp~~~~l~~~~~d~~------v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (350)
                      -+.+..+.+.+++..+++.+.++.      +..+++... .....+....   ...+......      .+... .....
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~G~------~~~~~-~~D~E   88 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD---MIPLRDPDGQ------PFPKN-GLDPE   88 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc---ceeccCCCCC------cCCcC-CCChh
Confidence            356889999977778888887776      555555531 1111111100   0000000000      01100 12445


Q ss_pred             eEEECCCCCeEEEEEeC------CCeEEEEeCCCCCce-ee---------------eecCCCeEEEEEcCCCCEEEEEec
Q 018806          217 ALSWGPDGRYLASASYE------SSSFTIWDVAQGLGT-PI---------------RRGFGGLSILKWSPTGDYFFAAKF  274 (350)
Q Consensus       217 ~~~~sp~g~~l~~~~~d------~g~i~iwd~~~~~~~-~~---------------~~~~~~v~~~~~sp~g~~l~~~~~  274 (350)
                      ++++.++|.++++.-.+      . .|+.++.. |... .+               ...+...-+++++|+|+.|+++.+
T Consensus        89 gi~~~~~g~~~is~E~~~~~~~~p-~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   89 GIAVPPDGSFWISSEGGRTGGIPP-RIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             HeEEecCCCEEEEeCCccCCCCCC-EEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            78887777777665444      4 78888866 4321 11               113456889999999996665532


Q ss_pred             -----CC--e-------EEEE--eCCC-Cce-ec----ccc-----CCCCeEEEEEcCCCCEEEEEEC------CCeEEE
Q 018806          275 -----DG--T-------FYLW--ETNT-WTS-EP----WSS-----TSGFVTGATWDPEGRMILLAFA------GSLTLG  321 (350)
Q Consensus       275 -----d~--~-------v~iw--d~~~-~~~-~~----~~~-----~~~~v~~~~~s~~g~~l~~~~~------~~~~~~  321 (350)
                           |+  .       ++++  |..+ ++. .+    +..     ....++.+.+-+++++|+.==+      ....++
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~  246 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIY  246 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEE
Confidence                 22  1       4555  4444 211 11    111     4567899999999998776322      346777


Q ss_pred             EEEeCCC
Q 018806          322 SIHFASK  328 (350)
Q Consensus       322 ~~~~~~~  328 (350)
                      .+++...
T Consensus       247 ~v~l~~a  253 (326)
T PF13449_consen  247 RVDLSDA  253 (326)
T ss_pred             EEEcccc
Confidence            7776643

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.47  E-value=1.5  Score=29.74  Aligned_cols=51  Identities=16%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             ecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 018806          273 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       273 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                      ..+|.+.-||..+++...+...-...+.++.++|+.+|+++-....++...
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ry   84 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRY   84 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEE
Confidence            345789999999998866665555779999999999999987555555443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.46  E-value=0.65  Score=25.75  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=17.7

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          292 SSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       292 ~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      ..........+|||||++|+.++.
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~   28 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSN   28 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEec
Confidence            344556788999999999999873

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.27  E-value=1.9  Score=29.31  Aligned_cols=39  Identities=15%  Similarity=0.149  Sum_probs=32.6

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  273 (350)
                      |.+..||..+++...+...-.....+++++|+.+|+.+-
T Consensus        37 GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   37 GRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred             cCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence            789999999998877777777889999999999887764

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.25  E-value=6.5  Score=35.87  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee------ee--ecCCCeEEEEEcCCC------CEEEEEe-----
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP------IR--RGFGGLSILKWSPTG------DYFFAAK-----  273 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~------~~--~~~~~v~~~~~sp~g------~~l~~~~-----  273 (350)
                      ...+.|+|.|||+.|++--.. |.|++++-.++....      +.  ...+....++++|+-      .+|....     
T Consensus        30 ~~Pw~maflPDG~llVtER~~-G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERAT-GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecC-CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            467899999999877765445 799999866543221      11  135778999999874      2443331     


Q ss_pred             -----cCCeEEEEeCCCC--ce---eccc-----cCCCCeEEEEEcCCCCEEEEEECC
Q 018806          274 -----FDGTFYLWETNTW--TS---EPWS-----STSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       274 -----~d~~v~iwd~~~~--~~---~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                           ....|.-|.+...  ..   ..+.     .....-..|+|.|||.+.++.++.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1234544554321  11   1111     111234578899999876655544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.24  E-value=2.9  Score=36.54  Aligned_cols=98  Identities=19%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeee-------ecCCCeEEEEEcCC---CCEE-EEEecC------
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR-------RGFGGLSILKWSPT---GDYF-FAAKFD------  275 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~-------~~~~~v~~~~~sp~---g~~l-~~~~~d------  275 (350)
                      ..++|+|.|||+.+++ ... |.|++++ ..+.. ..+.       ........++++|+   ..+| ++.+..      
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~-G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERS-GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETT-TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEE-eCC-ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            4688999999977665 445 8999999 33332 2211       23467899999994   2344 333321      


Q ss_pred             --CeEEEEeCCCC--ce---ec----cc---cCCCCeEEEEEcCCCCEEEEEE
Q 018806          276 --GTFYLWETNTW--TS---EP----WS---STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       276 --~~v~iwd~~~~--~~---~~----~~---~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                        ..|.-|....+  ..   ..    +.   .....-..|+|.|||.+.++.+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence              24444544433  11   11    11   1234557799999996655544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.23  E-value=11  Score=36.07  Aligned_cols=95  Identities=9%  Similarity=0.103  Sum_probs=56.2

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee--cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      +.+..++.||+.++|+.-... |.|.+-+.+..+...-..  .......++|.-+.  -++.+.+..+.+..-......-
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~-G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V~f  293 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTET-GKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND--AVVLSWEVNLMLVGPPGDSVQF  293 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecC-CcEEEEecchhhhhhccCCCCCCchHhceeecCC--ceEEEEeeeEEEEcCCCCcccc
Confidence            577889999999999888877 799988877665432221  22334477887655  2333344455555443333322


Q ss_pred             cccCCCCeEEEEEcCCCCEEEEE
Q 018806          291 WSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       291 ~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      +..+. .+  +.--+||-.|++.
T Consensus       294 ~yd~t-~~--l~~E~DGVRI~t~  313 (829)
T KOG2280|consen  294 YYDET-AI--LSAEVDGVRIITS  313 (829)
T ss_pred             ccCCC-ce--eeeccCeeEEecc
Confidence            22222 22  5556778777765

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.05  E-value=11  Score=35.82  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=28.1

Q ss_pred             CCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806          143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       143 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      -+..|-.+.|.++++.+++.-..|.|.+||+.
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~  159 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFS  159 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence            35679999999998889889999999999993

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.80  E-value=6.8  Score=32.69  Aligned_cols=117  Identities=14%  Similarity=0.032  Sum_probs=67.0

Q ss_pred             CCCCeeEEEEeeCCCeEEEEecC--CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          143 SQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       143 ~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      ...-...+.|..+|..+-++|.-  ..|+.+|+.+++......                       +...  ---..++.
T Consensus        43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-----------------------l~~~--~FgEGit~   97 (264)
T PF05096_consen   43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-----------------------LPPR--YFGEGITI   97 (264)
T ss_dssp             TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE------------------------TTT----EEEEEE
T ss_pred             CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-----------------------CCcc--ccceeEEE
Confidence            33456678887776555666654  578888887443221111                       1111  01122232


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      .  +..|.--+..+|...+||..+.+........+.-+.++  .||+.|+.......++++|.++.+.
T Consensus        98 ~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~  161 (264)
T PF05096_consen   98 L--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE  161 (264)
T ss_dssp             E--TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred             E--CCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence            2  33444445555799999999877666555556666666  5778888877788999999988765

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.73  E-value=0.93  Score=25.43  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=25.9

Q ss_pred             CCCCEEEEEe-cCCeEEEEeCCCCceeccccCCCCeEEEEE
Q 018806          264 PTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATW  303 (350)
Q Consensus       264 p~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~  303 (350)
                      |++++|+++. .+++|.++|..+++......-......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            5778776654 578999999988876443333334445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.65  E-value=15  Score=36.36  Aligned_cols=153  Identities=14%  Similarity=0.237  Sum_probs=89.0

Q ss_pred             CCCCCeeEEEEe---eC---CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCC--CCC
Q 018806          142 DSQRDVKVLEWR---PN---GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--NGE  213 (350)
Q Consensus       142 ~~~~~v~~~~~s---p~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  213 (350)
                      .-..+|..|+|.   ..   ...++++-....+.|+..............    ...+      ....+..+..+  .+.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~----~s~i------~~~~l~~i~~~~tgg~  146 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSR----PSRI------DPNPLLTISSSDTGGF  146 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCC----cccc------ccceeEEechhhcCCC
Confidence            356789999997   21   125777777788888885433220000000    0000      00111122211  124


Q ss_pred             ceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCc-----eeee-ecC----------CCeEEEEEcCCCCEEEEEecCC
Q 018806          214 QITALSWGPD-GRYLASASYESSSFTIWDVAQGLG-----TPIR-RGF----------GGLSILKWSPTGDYFFAAKFDG  276 (350)
Q Consensus       214 ~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~-----~~~~-~~~----------~~v~~~~~sp~g~~l~~~~~d~  276 (350)
                      ...+++|+|. .+.||..... |...||++.....     .... ...          ..-..+.|.++-..|++++ ..
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~-G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~  224 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEK-GNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS  224 (765)
T ss_pred             ccceEEeccCccceEEEEecc-CcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence            6788999994 5678888888 8999999922111     1111 111          2234788988877787775 46


Q ss_pred             eEEEEeCCCCceec-c--ccCCCCeEEEEEcCC
Q 018806          277 TFYLWETNTWTSEP-W--SSTSGFVTGATWDPE  306 (350)
Q Consensus       277 ~v~iwd~~~~~~~~-~--~~~~~~v~~~~~s~~  306 (350)
                      .+.++|+++..... +  ......|..+.-+++
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence            68999999877633 2  234567888888876

These proteins are found in fungi.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.43  E-value=4.4  Score=29.80  Aligned_cols=63  Identities=8%  Similarity=-0.021  Sum_probs=41.2

Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCC---CCEEEEEecCCeEEEEeCCCCce
Q 018806          224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      ...|+.++..  .+..||+..........-..++.++.+-.-   ..-++..+.+..|.-||.+..+.
T Consensus        64 ~D~LliGt~t--~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   64 RDCLLIGTQT--SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             cCEEEEeccc--eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            4456666665  799999998877766666678887776431   22344444467777777665443

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=91.28  E-value=2  Score=41.98  Aligned_cols=87  Identities=14%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             eEEEEEeCCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEE-EecCC-----eEEEEeCCCCce--eccccCCC
Q 018806          226 YLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFA-AKFDG-----TFYLWETNTWTS--EPWSSTSG  296 (350)
Q Consensus       226 ~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~-~~~d~-----~v~iwd~~~~~~--~~~~~~~~  296 (350)
                      .|+......|.+.+-|........+ ..+...+.+.+|||||+.|+. .+..+     .|++-|+.+...  ..+.-...
T Consensus       320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a  399 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA  399 (912)
T ss_pred             eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence            4666554335899999988777766 677889999999999999987 44333     588889876443  44444455


Q ss_pred             CeEEEEEcCCCCEEEE
Q 018806          297 FVTGATWDPEGRMILL  312 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~  312 (350)
                      .|-.-...++|..+++
T Consensus       400 aiprwrv~e~gdt~iv  415 (912)
T TIGR02171       400 AIPRWRVLENGDTVIV  415 (912)
T ss_pred             cccceEecCCCCeEEE
Confidence            6666666777766544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.19  E-value=9.8  Score=33.34  Aligned_cols=146  Identities=15%  Similarity=0.167  Sum_probs=83.0

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  221 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  221 (350)
                      +....+.++.+.|+ +.+++.+..|.+..- ....+.                     .|..   +.......++++.+.
T Consensus       170 ~~~g~~~~i~~~~~-g~~v~~g~~G~i~~s-~~~gg~---------------------tW~~---~~~~~~~~l~~i~~~  223 (334)
T PRK13684        170 DAAGVVRNLRRSPD-GKYVAVSSRGNFYST-WEPGQT---------------------AWTP---HQRNSSRRLQSMGFQ  223 (334)
T ss_pred             CCcceEEEEEECCC-CeEEEEeCCceEEEE-cCCCCC---------------------eEEE---eeCCCcccceeeeEc
Confidence            34567899999998 466677777765432 111111                     1222   222223588999999


Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCc-eeeee----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-ecc---c
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLG-TPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPW---S  292 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~---~  292 (350)
                      ++++.++++ .. |.+.+=..+.+.. .....    ....+..+.+.++++.++++ .+|.+. ...+.++. ...   .
T Consensus       224 ~~g~~~~vg-~~-G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~  299 (334)
T PRK13684        224 PDGNLWMLA-RG-GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE  299 (334)
T ss_pred             CCCCEEEEe-cC-CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC
Confidence            998877665 44 5664323444432 11111    12457788999988765554 567554 33444443 222   1


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          293 STSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       293 ~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ......+.+.|..+++.+++|..+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~G~~G~  324 (334)
T PRK13684        300 EVPSNFYKIVFLDPEKGFVLGQRGV  324 (334)
T ss_pred             CCCcceEEEEEeCCCceEEECCCce
Confidence            2223578888888888877665443

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=90.99  E-value=8.5  Score=37.00  Aligned_cols=168  Identities=14%  Similarity=0.192  Sum_probs=94.5

Q ss_pred             CccCeeEEEEecCCCEEEEEECCC--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      .+..+..+.|+|+|..++..+.++  ...+|.+... +    .. ..+...+....|+|++..++....++..+.-+.  
T Consensus        58 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~--  129 (620)
T COG1506          58 FGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LI-TKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG--  129 (620)
T ss_pred             cCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ce-eeeecccccceeCCCCCeEEEEecccccccCCc--
Confidence            345688889999999999877433  3456665433 2    11 235567889999999888877211110000000  


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCC
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG  255 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~  255 (350)
                                                       .+..-.=..+.|...+      ... ..+.+.|..+ ..........
T Consensus       130 ---------------------------------~~~~~~~~~~~~~~~g------~~~-~~l~~~d~~~-~~~~~~~~~~  168 (620)
T COG1506         130 ---------------------------------DHLFVDRLPVWFDGRG------GER-SDLYVVDIES-KLIKLGLGNL  168 (620)
T ss_pred             ---------------------------------eeeeecccceeecCCC------Ccc-cceEEEccCc-ccccccCCCC
Confidence                                             0000000111222222      223 2556666555 3333444556


Q ss_pred             CeEEEEEcCCCCEEEEEecCC-------eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          256 GLSILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .+....+++++..++....+.       ...++...++....+......+..+.|.++|+.++..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         169 DVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             ceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCCCceeeeeeeCCCCCeeEEec
Confidence            677777777777776554332       23444445666666666667789999999999766654

>PHA02713 hypothetical protein; Provisional

Probab=90.76  E-value=5.8  Score=37.55  Aligned_cols=65  Identities=5%  Similarity=0.015  Sum_probs=38.5

Q ss_pred             CCCeEEEEEeCC-----CeEEEEeCCC-CCceeeeecC---CCeEEEEEcCCCCEEEEEecCC--eEEEEeCCCCcee
Q 018806          223 DGRYLASASYES-----SSFTIWDVAQ-GLGTPIRRGF---GGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSE  289 (350)
Q Consensus       223 ~g~~l~~~~~d~-----g~i~iwd~~~-~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d~--~v~iwd~~~~~~~  289 (350)
                      +|+..+.|+.++     ..+..||..+ .+...+..-.   .....+.+  +|+..++|+.++  .+..||..+.+-.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence            466666665431     1467899887 5544322211   12222222  777788888888  7788888877654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.59  E-value=12  Score=33.54  Aligned_cols=150  Identities=15%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCce-eEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ...+..+++|.+++++.....++-|+-    +... ..........+.++.|.+++ .++.++..|.+..- .. .+...
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~----G~~~W~~~~~~~~~~l~~v~~~~dg-~l~l~g~~G~l~~S-~d-~G~~~  313 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP----GQPYWQPHNRASARRIQNMGWRADG-GLWLLTRGGGLYVS-KG-TGLTE  313 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC----CCcceEEecCCCccceeeeeEcCCC-CEEEEeCCceEEEe-cC-CCCcc
Confidence            344567788888877654443334553    3221 22223455678999999885 45556666665432 22 11110


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCC-CCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeee---ecCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR---RGFG  255 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~---~~~~  255 (350)
                      ...                   -+..+... ....+.++.|.+++..++++ .. |.+.... ..++. ....   ....
T Consensus       314 ~~~-------------------~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~-G~v~~s~-D~G~tW~~~~~~~~~~~  371 (398)
T PLN00033        314 EDF-------------------DFEEADIKSRGFGILDVGYRSKKEAWAAG-GS-GILLRST-DGGKSWKRDKGADNIAA  371 (398)
T ss_pred             ccc-------------------ceeecccCCCCcceEEEEEcCCCcEEEEE-CC-CcEEEeC-CCCcceeEccccCCCCc
Confidence            000                   01111111 12358899999887766554 55 5665553 33433 2222   1235


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEE
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLW  281 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iw  281 (350)
                      ..+.+.|.++++.+++| .+|.|--|
T Consensus       372 ~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        372 NLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             ceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            68899998877766665 46766443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.53  E-value=0.38  Score=46.27  Aligned_cols=71  Identities=15%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             CeeEEEEec---CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEE-----------EeeCCCeEEEEecCC
Q 018806          101 DLQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLE-----------WRPNGGRSLSVGCKG  166 (350)
Q Consensus       101 ~V~~v~~sp---~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~-----------~sp~~~~l~~~~~d~  166 (350)
                      ++.-|.|.|   +.-++.++-.++++++.+++...    ..++.+|...+..++           .||||..++....||
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG  257 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG  257 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence            345555554   55677777788999988875321    133335666555544           488888888888888


Q ss_pred             cEEEEecCC
Q 018806          167 GICIWAPSY  175 (350)
Q Consensus       167 ~v~iwd~~~  175 (350)
                      .++.|.+-.
T Consensus       258 ~v~f~Qiyi  266 (1283)
T KOG1916|consen  258 SVGFYQIYI  266 (1283)
T ss_pred             ccceeeeee
Confidence            888887653

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.03  E-value=21  Score=35.26  Aligned_cols=76  Identities=13%  Similarity=-0.007  Sum_probs=52.6

Q ss_pred             eEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee----e----------------cCCCeEEE
Q 018806          201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----R----------------GFGGLSIL  260 (350)
Q Consensus       201 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~----~----------------~~~~v~~~  260 (350)
                      |.....+.-+  +.|.++....-+..++.+..| |+|.++|..+.+.....    .                ....+..+
T Consensus       250 l~~~~~i~~~--~~V~si~~~~~~~~v~~~~~D-GsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~v  326 (753)
T PF11635_consen  250 LRRLDDITLN--KRVVSITSPELDIVVAFAFSD-GSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHV  326 (753)
T ss_pred             EEEecccccC--CeEEEEEecccCcEEEEEEcC-CeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceE
Confidence            4444444433  588999988888889998888 79999998776432111    0                01123457


Q ss_pred             EEcCCCCEEEEEecCCeEE
Q 018806          261 KWSPTGDYFFAAKFDGTFY  279 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~  279 (350)
                      +|||.+.-++.-..++.+.
T Consensus       327 afSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  327 AFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             EECcccceEEEEecCCCce
Confidence            8999999888888888755

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.65  E-value=9.4  Score=30.70  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=63.9

Q ss_pred             CeEEEEEeCCCeEEEEeCCCCCce--eeeecCCCeEEEEEcCCCCEEEEEecC---C---eEEEE-eCCCC----ce--e
Q 018806          225 RYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKFD---G---TFYLW-ETNTW----TS--E  289 (350)
Q Consensus       225 ~~l~~~~~d~g~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~d---~---~v~iw-d~~~~----~~--~  289 (350)
                      ..|..+... ..|.+|++......  ..+..-+.|..+.++..|.+|++--.+   .   .+|+| |.+..    +.  .
T Consensus        29 d~Lfva~~g-~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASG-CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCC-CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            444444445 48999999844433  344456889999999999999987432   2   55665 22211    11  1


Q ss_pred             cccc---------------------CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          290 PWSS---------------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       290 ~~~~---------------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ++.+                     -...+.+++-.|-.--|++|+++...+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence            1111                     2345677888886556667888888888876643

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.61  E-value=0.59  Score=41.49  Aligned_cols=159  Identities=14%  Similarity=0.104  Sum_probs=84.4

Q ss_pred             CCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC-ceeecccccccceecCCCCCceEEeeeccCCCCCcee-eEEE
Q 018806          143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSW  220 (350)
Q Consensus       143 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~  220 (350)
                      ....|..+-..|||+.+..-. ..++.++++...... .++...                     -.+.....|+ .+..
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~-g~~~~v~~L~~r~l~~rkl~~d---------------------spg~~~~~Vte~l~l  276 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRT-GSELVVALLDKRSLQIRKLVDD---------------------SPGDSRHQVTEQLYL  276 (733)
T ss_pred             CccchHhhEECCCCCEEEEec-CCeEEEEeecccccchhhhhhc---------------------CCCchHHHHHHHHHH
Confidence            345678888999976555444 478888888733211 111000                     0110001222 2222


Q ss_pred             CCCCCeEEEEEeCCCeEEEE-eCCCCCceee---eec---CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc
Q 018806          221 GPDGRYLASASYESSSFTIW-DVAQGLGTPI---RRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS  293 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iw-d~~~~~~~~~---~~~---~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~  293 (350)
                      -..|..+.....| |-|.-| |++.+....+   ...   ...+..+.=..+.+-+++-..+|++.++.....+..-...
T Consensus       277 L~Gg~SLLv~~~d-G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~  355 (733)
T COG4590         277 LSGGFSLLVVHED-GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER  355 (733)
T ss_pred             HhCceeEEEEcCC-CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh
Confidence            2346677778888 576666 6554432211   111   1222222212233446666778888877655544432222


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       294 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      .-..+.-+++||++.+|++-..+.+.++.++
T Consensus       356 ~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~  386 (733)
T COG4590         356 AYQAPQLVAMSPNQAYLLSEDQGKIRLAQLE  386 (733)
T ss_pred             hhcCcceeeeCcccchheeecCCceEEEEec
Confidence            3335677899999999987655555655554

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=89.49  E-value=14  Score=32.46  Aligned_cols=81  Identities=14%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCCCce---ecccc-CCCCeEEEEEcCCC
Q 018806          233 ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS---EPWSS-TSGFVTGATWDPEG  307 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~~~~---~~~~~-~~~~v~~~~~s~~g  307 (350)
                      ..|.+.-||..+.....+...-.-...++.|||+.+++.+-. -..|+-|=++..+.   ..+.. -.+..-.+..+++|
T Consensus       197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G  276 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTG  276 (376)
T ss_pred             CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCC
Confidence            347888899888776666666667778999999999887743 22343333444333   22222 34455567788999


Q ss_pred             CEEEEE
Q 018806          308 RMILLA  313 (350)
Q Consensus       308 ~~l~~~  313 (350)
                      .+-+.-
T Consensus       277 ~fWVal  282 (376)
T KOG1520|consen  277 HFWVAL  282 (376)
T ss_pred             CEEEEE
Confidence            665543

>PHA03098 kelch-like protein; Provisional

Probab=89.36  E-value=12  Score=35.18  Aligned_cols=66  Identities=9%  Similarity=0.043  Sum_probs=35.9

Q ss_pred             CCCeEEEEEeCC-------CeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCc
Q 018806          223 DGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWT  287 (350)
Q Consensus       223 ~g~~l~~~~~d~-------g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~  287 (350)
                      +++.++.|+...       ..+.+||..+.+...+....   .....+.+  +++.++.|+.+     +.|.+||.++.+
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            455666665321       14888998877654432111   11112222  66666666653     467888887765


Q ss_pred             eec
Q 018806          288 SEP  290 (350)
Q Consensus       288 ~~~  290 (350)
                      -..
T Consensus       515 W~~  517 (534)
T PHA03098        515 WTL  517 (534)
T ss_pred             EEe
Confidence            433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.26  E-value=20  Score=34.02  Aligned_cols=103  Identities=14%  Similarity=0.164  Sum_probs=55.6

Q ss_pred             CCCeEEEEEeCC-----CeEEEEeCCCCCceeeee---cCCCeEEEEEcCCCCEEEEEecCC-----eEEEEeCCCCcee
Q 018806          223 DGRYLASASYES-----SSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTSE  289 (350)
Q Consensus       223 ~g~~l~~~~~d~-----g~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~-----~v~iwd~~~~~~~  289 (350)
                      +|+..++|+.+.     .++..||..+.....+..   ...... ++ .-++.+.+.|+.|+     +|..||..+.+-.
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence            567777776442     167889988876543322   112222 22 22666777887765     4788999887765


Q ss_pred             ccccCCCCeEEEEE-cCCCCEEEEEE-CCCeEEEEEEeCC
Q 018806          290 PWSSTSGFVTGATW-DPEGRMILLAF-AGSLTLGSIHFAS  327 (350)
Q Consensus       290 ~~~~~~~~v~~~~~-s~~g~~l~~~~-~~~~~~~~~~~~~  327 (350)
                      .+..-......+.. .-+++..++|+ ++...+..+..++
T Consensus       505 ~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~yd  544 (571)
T KOG4441|consen  505 MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYD  544 (571)
T ss_pred             EcccCccccccccEEEECCEEEEEecccCccccceeEEcC
Confidence            44322222222211 22345555555 5555555665553

>PHA02713 hypothetical protein; Provisional

Probab=89.25  E-value=20  Score=33.97  Aligned_cols=77  Identities=13%  Similarity=0.149  Sum_probs=37.9

Q ss_pred             eEEEEeCCCCCceeeeecC-CCeEEEEEcCCCCEEEEEecC------CeEEEEeCCC-Cceeccc---cCCCCeEEEEEc
Q 018806          236 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD------GTFYLWETNT-WTSEPWS---STSGFVTGATWD  304 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d------~~v~iwd~~~-~~~~~~~---~~~~~v~~~~~s  304 (350)
                      .+..||..+.+...+..-. .........-+|++.+.|+.+      ..+..||.++ .+-....   ........++  
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--
Confidence            5778888776543322111 111111122356666667643      2467899887 4543222   1111222222  


Q ss_pred             CCCCEEEEEE
Q 018806          305 PEGRMILLAF  314 (350)
Q Consensus       305 ~~g~~l~~~~  314 (350)
                      -+|+..++|+
T Consensus       511 ~~~~iyv~Gg  520 (557)
T PHA02713        511 HDNTIMMLHC  520 (557)
T ss_pred             ECCEEEEEee
Confidence            2567777776

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.97  E-value=9.4  Score=34.39  Aligned_cols=74  Identities=18%  Similarity=0.343  Sum_probs=46.9

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEE----cCC----------------CCEE-EE
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW----SPT----------------GDYF-FA  271 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~----sp~----------------g~~l-~~  271 (350)
                      ..+.++..+|++++.++...- |.|.++|+.++....+-++-.... +.|    ...                ..+| +.
T Consensus       308 R~~~~i~~sP~~~laA~tDsl-GRV~LiD~~~~~vvrmWKGYRdAq-c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSL-GRVLLIDVARGIVVRMWKGYRDAQ-CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCC-CcEEEEECCCChhhhhhccCccce-EEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            468899999998877775444 899999999886554433221110 111    000                1122 45


Q ss_pred             EecCCeEEEEeCCCCce
Q 018806          272 AKFDGTFYLWETNTWTS  288 (350)
Q Consensus       272 ~~~d~~v~iwd~~~~~~  288 (350)
                      +-..|.|.||.+++|..
T Consensus       386 aprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPR  402 (415)
T ss_pred             eccCCeEEEEecCCCCE
Confidence            56678999999988765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.70  E-value=7.3  Score=35.64  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEe---------CCCCCce----------eeeec--CCCeEEEEEcCCC---CEE
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWD---------VAQGLGT----------PIRRG--FGGLSILKWSPTG---DYF  269 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd---------~~~~~~~----------~~~~~--~~~v~~~~~sp~g---~~l  269 (350)
                      .|..+..++.|..++.++.+ |.+.++=         ++.++..          .++..  .-.+..++|+|+.   ..|
T Consensus       105 eV~~vl~s~~GS~VaL~G~~-Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIK-GLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCceEEEecCC-eeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            56788899999999998888 5555442         1122211          11111  1235678999975   567


Q ss_pred             EEEecCCeEEEEeCCCCce
Q 018806          270 FAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       270 ~~~~~d~~v~iwd~~~~~~  288 (350)
                      ..-..|.+|++||+...+.
T Consensus       184 ~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEecCcEEEEEecCCcch
Confidence            7778899999999976544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.68  E-value=21  Score=32.18  Aligned_cols=101  Identities=12%  Similarity=0.127  Sum_probs=61.7

Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce---eeee-----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRR-----GFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~---~~~~-----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      ...+.++.|.+++..++++ .. |.+ ++....++.-   .+..     ....+..+.|.+++..+++| .+|.+.... 
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~-G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-  354 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RG-GGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-  354 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CC-ceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-
Confidence            3578999999998887765 44 454 3344444311   1111     12358889999888766555 567665553 


Q ss_pred             CCCce-ecc---ccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          284 NTWTS-EPW---SSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       284 ~~~~~-~~~---~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      +.++. ...   ..-....+.+.|.++++.++++.++.
T Consensus       355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~  392 (398)
T PLN00033        355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV  392 (398)
T ss_pred             CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence            44443 222   12345688999988888888775443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.46  E-value=6.2  Score=30.76  Aligned_cols=30  Identities=20%  Similarity=0.393  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCC------CEEEEEecCCeEEEEeCCC
Q 018806          256 GLSILKWSPTG------DYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       256 ~v~~~~~sp~g------~~l~~~~~d~~v~iwd~~~  285 (350)
                      .+..++|||.|      -.|++...++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            67889999954      3578888999999997664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PHA03098 kelch-like protein; Provisional

Probab=87.21  E-value=27  Score=32.93  Aligned_cols=90  Identities=4%  Similarity=-0.114  Sum_probs=45.3

Q ss_pred             CCCeEEEEEeCC-----CeEEEEeCCCCCceeeeecCCC-eEEEEEcCCCCEEEEEecC--------CeEEEEeCCCCce
Q 018806          223 DGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTS  288 (350)
Q Consensus       223 ~g~~l~~~~~d~-----g~i~iwd~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~~~~~d--------~~v~iwd~~~~~~  288 (350)
                      +++.++.|+...     ..+..||..+.+.........+ ....+...+++..+.|+.+        ..+.+||..+.+-
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence            566666666321     2688899887654432221111 1111222356666666542        2388999988765


Q ss_pred             eccccC---CCCeEEEEEcCCCCEEEEEE
Q 018806          289 EPWSST---SGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       289 ~~~~~~---~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ..+...   ......+.  -+++.+++|+
T Consensus       469 ~~~~~~~~~r~~~~~~~--~~~~iyv~GG  495 (534)
T PHA03098        469 TELSSLNFPRINASLCI--FNNKIYVVGG  495 (534)
T ss_pred             eeCCCCCcccccceEEE--ECCEEEEEcC
Confidence            433211   11112222  2667766665

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.19  E-value=8.3  Score=34.74  Aligned_cols=30  Identities=10%  Similarity=0.165  Sum_probs=26.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED  130 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~  130 (350)
                      .+.++..+|++++.|+...-|.|.++|+..
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~  338 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVAR  338 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            589999999999999887889999999853

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.17  E-value=9.7  Score=29.66  Aligned_cols=31  Identities=23%  Similarity=0.580  Sum_probs=22.8

Q ss_pred             CceeeEEECCCC-----C-eEEEEEeCCCeEEEEeCCC
Q 018806          213 EQITALSWGPDG-----R-YLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       213 ~~v~~~~~sp~g-----~-~l~~~~~d~g~i~iwd~~~  244 (350)
                      ..+.+++|||.|     + .|++.+.+ |.|.+|.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~-~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSN-GRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCC-CeEEEEecCC
Confidence            478999999954     3 35666666 7999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.11  E-value=15  Score=30.01  Aligned_cols=99  Identities=12%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             eeEEECCCCCeEEEEEeCCCeEEEEe--CCCCCce---eee---e----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          216 TALSWGPDGRYLASASYESSSFTIWD--VAQGLGT---PIR---R----GFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       216 ~~~~~sp~g~~l~~~~~d~g~i~iwd--~~~~~~~---~~~---~----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      ..++|+.+.+.++.....+-+|.-||  ..+|...   .+.   .    ..-..-.++...+|.+.++.-..++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            46889988887776544334776677  5565321   111   1    1112334666778888888888899999999


Q ss_pred             CCCcee-ccccCCCCeEEEEEcC-CCCEEEEEE
Q 018806          284 NTWTSE-PWSSTSGFVTGATWDP-EGRMILLAF  314 (350)
Q Consensus       284 ~~~~~~-~~~~~~~~v~~~~~s~-~g~~l~~~~  314 (350)
                      .+|+.. .+.-....+++++|-- +-..+++++
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            999984 4444577899999964 334455544

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=86.99  E-value=19  Score=30.96  Aligned_cols=87  Identities=15%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             eEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec----C----------------C
Q 018806          217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF----D----------------G  276 (350)
Q Consensus       217 ~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~----d----------------~  276 (350)
                      +..|. +|+..++-+.. |.+.-+|.++|+...+..-.+....++|.  |.+++++..    +                .
T Consensus       207 SPRWh-dgrLwvldsgt-Gev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~C  282 (335)
T TIGR03032       207 SPRWY-QGKLWLLNSGR-GELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGC  282 (335)
T ss_pred             CCcEe-CCeEEEEECCC-CEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence            33443 56666766667 79999999989888777777888899998  888776532    1                2


Q ss_pred             eEEEEeCCCCceec---cccCCCCeEEEEEcCCC
Q 018806          277 TFYLWETNTWTSEP---WSSTSGFVTGATWDPEG  307 (350)
Q Consensus       277 ~v~iwd~~~~~~~~---~~~~~~~v~~~~~s~~g  307 (350)
                      -|.+.|+++|....   +.+.-..+.+++.-|.-
T Consensus       283 Gv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~  316 (335)
T TIGR03032       283 GVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV  316 (335)
T ss_pred             cEEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence            36666777777532   33333445566666643

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK13615 lipoprotein LpqB; Provisional

Probab=86.55  E-value=29  Score=32.74  Aligned_cols=156  Identities=12%  Similarity=0.047  Sum_probs=91.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ...+++.++++..+|....++.+.++...   +.. ..+.  ....++...|.++| .+-++......++......+...
T Consensus       335 ~~~s~avS~dg~~~A~v~~~~~l~vg~~~---~~~-~~~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~  407 (557)
T PRK13615        335 QADAATLSADGRQAAVRNASGVWSVGDGD---RDA-VLLD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH  407 (557)
T ss_pred             ccccceEcCCCceEEEEcCCceEEEecCC---Ccc-eeec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE
Confidence            34788999999999988777877777653   121 2222  23357888888885 44444433334554443222221


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC--CCeEEEEeC--CCCCceee------
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDV--AQGLGTPI------  250 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~--~~~~~~~~------  250 (350)
                      .+.                       ......+.|..+..|+||-.++.-...  .++|.+=-+  ..+....+      
T Consensus       408 ~v~-----------------------v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~  464 (557)
T PRK13615        408 PVA-----------------------VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLE  464 (557)
T ss_pred             Eee-----------------------ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEE
Confidence            111                       111123589999999999988775431  135555322  22212222      


Q ss_pred             -eecCCCeEEEEEcCCCCEEEEE---ecCCeEEEEeCCCC
Q 018806          251 -RRGFGGLSILKWSPTGDYFFAA---KFDGTFYLWETNTW  286 (350)
Q Consensus       251 -~~~~~~v~~~~~sp~g~~l~~~---~~d~~v~iwd~~~~  286 (350)
                       ......+.++.|..++.+++.+   +.+..+++..+...
T Consensus       465 l~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~  504 (557)
T PRK13615        465 LLASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGP  504 (557)
T ss_pred             cccCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence             1123478899999999876655   23457788887744

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.42  E-value=20  Score=31.25  Aligned_cols=101  Identities=17%  Similarity=0.312  Sum_probs=63.3

Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCe------EEEEeCCC--CC--c------eeeeecCC--------CeEEEEEcCCCC
Q 018806          212 GEQITALSWGPDGRYLASASYESSS------FTIWDVAQ--GL--G------TPIRRGFG--------GLSILKWSPTGD  267 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~------i~iwd~~~--~~--~------~~~~~~~~--------~v~~~~~sp~g~  267 (350)
                      -+.+..+.+.+++..+++.+.+ |.      +..+++..  +.  .      ..+....+        ..-++++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDR-GPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECC-CCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3678899999765566666666 56      65555543  11  1      11111122        233688878888


Q ss_pred             EEEEEecC------CeEEEEeCCCCce-ecc---------------ccCCCCeEEEEEcCCCCEEEEEE
Q 018806          268 YFFAAKFD------GTFYLWETNTWTS-EPW---------------SSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       268 ~l~~~~~d------~~v~iwd~~~~~~-~~~---------------~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ++++.-.+      ..|+.++.. |+. ..+               .......-+++++|+|+.|+++.
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            88777667      788888876 443 111               12345678999999999777664

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.62  E-value=7.5  Score=35.55  Aligned_cols=81  Identities=20%  Similarity=0.270  Sum_probs=54.4

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccC--------CCCC--ceeEec--------CCCCCCeeEEEEeeCC---
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED--------SEGK--DACILT--------SDSQRDVKVLEWRPNG---  156 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~--------~~~~--~~~~~~--------~~~~~~v~~~~~sp~~---  156 (350)
                      ..+.|..+..|+.|..+|.++.+|.+.+ .+..        .+++  ..+..+        ....-.+..++|+|+.   
T Consensus       102 V~feV~~vl~s~~GS~VaL~G~~Gi~vM-eLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D  180 (741)
T KOG4460|consen  102 VLFEVYQVLLSPTGSHVALIGIKGLMVM-ELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD  180 (741)
T ss_pred             ceEEEEEEEecCCCceEEEecCCeeEEE-EchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence            3568999999999999999999985543 3310        1121  112111        1112246778999974   


Q ss_pred             CeEEEEecCCcEEEEecCCCCCC
Q 018806          157 GRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       157 ~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .+++.-.+|+.+++||+......
T Consensus       181 ~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  181 PHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             ceEEEEecCcEEEEEecCCcchh
Confidence            57888899999999999855543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.47  E-value=13  Score=27.50  Aligned_cols=93  Identities=9%  Similarity=0.094  Sum_probs=57.3

Q ss_pred             EECCCCCeEEEEEeCCCeEEEEeCCCCC--------ceeeeecCCCeEEEE---EcCC--CCEEEEEecCCeEEEEeCCC
Q 018806          219 SWGPDGRYLASASYESSSFTIWDVAQGL--------GTPIRRGFGGLSILK---WSPT--GDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       219 ~~sp~g~~l~~~~~d~g~i~iwd~~~~~--------~~~~~~~~~~v~~~~---~sp~--g~~l~~~~~d~~v~iwd~~~  285 (350)
                      .|......|++++.- |+|.|++.....        ...+..-...|++++   |.|+  ...|+.|+ ...+-.||+..
T Consensus         5 kfDG~~pcL~~aT~~-gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTG-GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecC-CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            455555678888877 699999866432        234445556777775   4332  33455554 56799999988


Q ss_pred             CceeccccCCCCeEEEEEcC----CCCEEEEE
Q 018806          286 WTSEPWSSTSGFVTGATWDP----EGRMILLA  313 (350)
Q Consensus       286 ~~~~~~~~~~~~v~~~~~s~----~g~~l~~~  313 (350)
                      ..-.-...-...+.++.+-.    +..++++|
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG  114 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG  114 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEEC
Confidence            77654444556677776632    34455554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=85.13  E-value=32  Score=31.98  Aligned_cols=65  Identities=11%  Similarity=0.066  Sum_probs=34.4

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEecCCCC-----CCee--EEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-----RDVK--VLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~-----~~v~--~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      +..+++++.++.+.-.|..+  ++..-.......     ..+.  .+... ++..++++..++.|+-+|.++++.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~  132 (488)
T cd00216          61 DGDMYFTTSHSALFALDAAT--GKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ  132 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCC--ChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE
Confidence            34566667778887777743  443322211111     0010  11111 125677777789999999875544

The alignment model contains an 8-bladed beta-propeller.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=84.96  E-value=0.9  Score=43.89  Aligned_cols=113  Identities=19%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             CceeeEEECC-CCCeEEEEEeCCCeEEEEeCCC--CCcee-e-----eecCCCeEEEEEcC---CCCEEEEEecCCeEEE
Q 018806          213 EQITALSWGP-DGRYLASASYESSSFTIWDVAQ--GLGTP-I-----RRGFGGLSILKWSP---TGDYFFAAKFDGTFYL  280 (350)
Q Consensus       213 ~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~--~~~~~-~-----~~~~~~v~~~~~sp---~g~~l~~~~~d~~v~i  280 (350)
                      +.+-.+.|-. +...+.   .+-|.+.+||+.-  |+... +     ......+.-+.|+|   +.-++..+-.++.+++
T Consensus       133 G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l  209 (1283)
T KOG1916|consen  133 GGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL  209 (1283)
T ss_pred             CCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence            5677777743 222222   2226788998763  33221 1     11223445566665   5667777778889999


Q ss_pred             EeCCCCceeccccCCCCeEEE-----------EEcCCCCEEEEEE-CCCeEEEEEEeCCC
Q 018806          281 WETNTWTSEPWSSTSGFVTGA-----------TWDPEGRMILLAF-AGSLTLGSIHFASK  328 (350)
Q Consensus       281 wd~~~~~~~~~~~~~~~v~~~-----------~~s~~g~~l~~~~-~~~~~~~~~~~~~~  328 (350)
                      .+..+....-+..|..++..+           ..||||+.++.++ ++....|.+.+.++
T Consensus       210 L~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  210 LNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             eeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence            888765543334455444333           3689999999987 66667777776654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.79  E-value=34  Score=35.19  Aligned_cols=146  Identities=10%  Similarity=0.140  Sum_probs=85.2

Q ss_pred             ECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE--------eeCCCeEEEEecCCcEEEEecCCCCCCceeecccccc
Q 018806          118 SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW--------RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       118 s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--------sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      +.|+.+.+|+++.  +.....+ .+-...|..+..        .|.=++++..++--.|.++-+.............   
T Consensus        96 TiDn~L~lWny~~--~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~---  169 (1311)
T KOG1900|consen   96 TIDNNLFLWNYES--DNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN---  169 (1311)
T ss_pred             EeCCeEEEEEcCC--CCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc---
Confidence            5688999999975  2222222 344445655543        3334577788887777777665333221111000   


Q ss_pred             cceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE--eCCCC---C-c----------------
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW--DVAQG---L-G----------------  247 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw--d~~~~---~-~----------------  247 (350)
                                   -.-.+... +..|.++....+|+.+++| .| |.|+-.  ....+   + +                
T Consensus       170 -------------~~~~i~~d-g~~V~~I~~t~nGRIF~~G-~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs  233 (1311)
T KOG1900|consen  170 -------------TSFKISVD-GVSVNCITYTENGRIFFAG-RD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS  233 (1311)
T ss_pred             -------------cceeeecC-CceEEEEEeccCCcEEEee-cC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence                         00001111 3578899988888877765 45 344432  22221   0 0                


Q ss_pred             -eeee-ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 018806          248 -TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       248 -~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~  285 (350)
                       ..+. .+..+|..+........+.+-++.++|.+||+..
T Consensus       234 ~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  234 LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence             1122 3356889999988888888999999999999976

>PLN02193 nitrile-specifier protein

Probab=84.31  E-value=35  Score=31.62  Aligned_cols=68  Identities=10%  Similarity=-0.004  Sum_probs=38.1

Q ss_pred             CCCeEEEEEeCC---CeEEEEeCCCCCceeeeec---C-CCeEEEEEcCCCCEEEEEecC--------------CeEEEE
Q 018806          223 DGRYLASASYES---SSFTIWDVAQGLGTPIRRG---F-GGLSILKWSPTGDYFFAAKFD--------------GTFYLW  281 (350)
Q Consensus       223 ~g~~l~~~~~d~---g~i~iwd~~~~~~~~~~~~---~-~~v~~~~~sp~g~~l~~~~~d--------------~~v~iw  281 (350)
                      +++.++.++.+.   ..+.+||..+.+...+...   . ......+..-++++++.|+.+              ..+.+|
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~  407 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL  407 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence            466666665431   2689999988765544321   1 111111222356666777642              258899


Q ss_pred             eCCCCceec
Q 018806          282 ETNTWTSEP  290 (350)
Q Consensus       282 d~~~~~~~~  290 (350)
                      |+.+.+-..
T Consensus       408 D~~t~~W~~  416 (470)
T PLN02193        408 DTETLQWER  416 (470)
T ss_pred             EcCcCEEEE
Confidence            998876543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=84.10  E-value=23  Score=29.37  Aligned_cols=143  Identities=17%  Similarity=0.225  Sum_probs=77.2

Q ss_pred             EEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-C--CcEEEEecCCCCCCceeecccccccceecCCCCCc
Q 018806          124 IVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR  200 (350)
Q Consensus       124 ~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (350)
                      .+||+.+.+..   .+....+-.+.+-.+-+||+.+.++|. +  ..+++++........                   .
T Consensus        49 ~~yD~~tn~~r---pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~-------------------~  106 (243)
T PF07250_consen   49 VEYDPNTNTFR---PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTC-------------------D  106 (243)
T ss_pred             EEEecCCCcEE---eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCC-------------------C
Confidence            37888653322   222223444555567799877766665 2  557777654201100                   1


Q ss_pred             eEEe-eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC--Ccee--eeec-----C-CCeEEEEEcCCCCEE
Q 018806          201 WTLV-DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTP--IRRG-----F-GGLSILKWSPTGDYF  269 (350)
Q Consensus       201 ~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~--~~~~--~~~~-----~-~~v~~~~~sp~g~~l  269 (350)
                      |... ..+..  ....-+..--|||+.|+.++...-+..+|.-...  ....  +...     . .-.-.+-..|+|+.+
T Consensus       107 w~e~~~~m~~--~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lF  184 (243)
T PF07250_consen  107 WTESPNDMQS--GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLF  184 (243)
T ss_pred             ceECcccccC--CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEE
Confidence            1111 11222  2355566667899999999887546666665322  1111  1111     1 112346668999999


Q ss_pred             EEEecCCeEEEEeCCCCce-eccc
Q 018806          270 FAAKFDGTFYLWETNTWTS-EPWS  292 (350)
Q Consensus       270 ~~~~~d~~v~iwd~~~~~~-~~~~  292 (350)
                      +.+..+.  .|||..+.+. ..+.
T Consensus       185 i~an~~s--~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  185 IFANRGS--IIYDYKTNTVVRTLP  206 (243)
T ss_pred             EEEcCCc--EEEeCCCCeEEeeCC
Confidence            8887554  5678888766 3443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=83.85  E-value=50  Score=33.06  Aligned_cols=220  Identities=11%  Similarity=0.094  Sum_probs=110.9

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe--cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC-
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN-  178 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-  178 (350)
                      |--..+--|..+|.++..||.+.-+.++..++.....-  .. ...++.--.|+..++..+.+.+|+-..+|..+..-. 
T Consensus       586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~  664 (1096)
T KOG1897|consen  586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY  664 (1096)
T ss_pred             eeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence            33344545678999999999998887765555322111  11 234666667777766666666666555665441111 


Q ss_pred             ----------CceeecccccccceecCCCCCc--eEEeeeccCC------CCCceeeEEECCCCCeEEEEEeC-------
Q 018806          179 ----------AASVRSGAASFLGALSRGPGTR--WTLVDFLRSQ------NGEQITALSWGPDGRYLASASYE-------  233 (350)
Q Consensus       179 ----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~d-------  233 (350)
                                ..++...+  ....+.....+.  +...+.++.-      -......+++.+....+.+.+..       
T Consensus       665 spls~kev~~~c~f~s~a--~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~  742 (1096)
T KOG1897|consen  665 SPLSLKEVNHMCPFNSDA--YPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEY  742 (1096)
T ss_pred             eccchHHhhhhccccccc--CCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhh
Confidence                      11111110  001111111221  1112222111      01355677777644444433221       


Q ss_pred             ----C--CeEEEEeCCCCCceeeeecC-----CCeEEEEEcCC-CCEEEEEe----------cCCeEEEEeCCC-Cceec
Q 018806          234 ----S--SSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPT-GDYFFAAK----------FDGTFYLWETNT-WTSEP  290 (350)
Q Consensus       234 ----~--g~i~iwd~~~~~~~~~~~~~-----~~v~~~~~sp~-g~~l~~~~----------~d~~v~iwd~~~-~~~~~  290 (350)
                          .  -.++++|-++.+........     -.+.++.|..| +.++++|.          ..|.|.+|.+.. ++.+.
T Consensus       743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~  822 (1096)
T KOG1897|consen  743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL  822 (1096)
T ss_pred             cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence                0  14666776655443322211     22445568777 67777764          247888888877 33322


Q ss_pred             cc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          291 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       291 ~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..  .-.+.+.++. --+|++|| |-+....++.|...
T Consensus       823 v~e~~v~Gav~aL~-~fngkllA-~In~~vrLye~t~~  858 (1096)
T KOG1897|consen  823 VAETVVKGAVYALV-EFNGKLLA-GINQSVRLYEWTTE  858 (1096)
T ss_pred             eeeeeeccceeehh-hhCCeEEE-ecCcEEEEEEcccc
Confidence            22  2234455443 23577766 55666777777655

>PLN02153 epithiospecifier protein

Probab=83.52  E-value=30  Score=30.32  Aligned_cols=54  Identities=15%  Similarity=0.001  Sum_probs=30.2

Q ss_pred             eEEEEeCCCCCceeeeec---CCC-eEEEEEcCCCCEEEEEecC--------------CeEEEEeCCCCcee
Q 018806          236 SFTIWDVAQGLGTPIRRG---FGG-LSILKWSPTGDYFFAAKFD--------------GTFYLWETNTWTSE  289 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~---~~~-v~~~~~sp~g~~l~~~~~d--------------~~v~iwd~~~~~~~  289 (350)
                      .+.+||..+.+-..+...   ..+ ....+...++++++.|+..              +.++.||.++.+-.
T Consensus       218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~  289 (341)
T PLN02153        218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE  289 (341)
T ss_pred             ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence            688999888765544321   111 1111122356666777641              26788888776543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.25  E-value=27  Score=29.64  Aligned_cols=183  Identities=13%  Similarity=0.031  Sum_probs=0.0

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      |..+...-+-.++..|-.--..-+|+....+........ .-.+-+..+.++.+  +.+.+-.+.-++|.|+..+..+..
T Consensus        45 vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i-~~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~  121 (370)
T COG5276          45 VSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVI-NARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTL  121 (370)
T ss_pred             cccccccccccccccCceEeeccccCcccccCcceEEEE-ehhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcce


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee----cCCCe
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGL  257 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~----~~~~v  257 (350)
                      +...                          +-.=..-.|.-.|++...+..++ -+.+.|+.+.+...+.+    .....
T Consensus       122 ~~~l--------------------------nt~gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~lagrya~~~~d~  174 (370)
T COG5276         122 IGFL--------------------------NTDGYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPGGDT  174 (370)
T ss_pred             eccc--------------------------cCCceEEEEEecCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCCCCc


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC---CCCeEEEEEcCCCCEEEEEECC
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST---SGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      ..++.|  |++-..+..|+-+.|-|+.....-.+.++   ...+.++..+++..+++....+
T Consensus       175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg  234 (370)
T COG5276         175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG  234 (370)
T ss_pred             eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.12  E-value=20  Score=30.50  Aligned_cols=77  Identities=13%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             CeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCCEEEEEe------cCCeEEEEeCCCCceeccccC-----CCCeEEEE
Q 018806          235 SSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAK------FDGTFYLWETNTWTSEPWSST-----SGFVTGAT  302 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~------~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~  302 (350)
                      ..|++||..+.+....-. -.+.|..+.|..+.+.++.|.      ....+..||..+.+...+...     .++|..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            379999998877654433 357899999986666667664      345788999988776554442     36777777


Q ss_pred             Ec-CCCCEEE
Q 018806          303 WD-PEGRMIL  311 (350)
Q Consensus       303 ~s-~~g~~l~  311 (350)
                      +. .|+..+.
T Consensus        96 ~~~~d~~~~~  105 (281)
T PF12768_consen   96 FISNDGSNFW  105 (281)
T ss_pred             eeccCCceEE
Confidence            63 3444344

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=82.12  E-value=35  Score=30.09  Aligned_cols=53  Identities=15%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          274 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       274 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      .+|.+.-||..+.....+...-.-...++.|||+.+++++-....++...-+.
T Consensus       197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~  249 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIK  249 (376)
T ss_pred             CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEec
Confidence            46778888888777666665555678899999999999886444444444443

>PRK13615 lipoprotein LpqB; Provisional

Probab=82.03  E-value=47  Score=31.44  Aligned_cols=153  Identities=14%  Similarity=0.151  Sum_probs=88.1

Q ss_pred             eEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeE
Q 018806          148 KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  227 (350)
Q Consensus       148 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  227 (350)
                      .+++.++++..+++...++.+.++...  +....+..                           ...++.-+|.++| .+
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~--~~~~~~~~---------------------------~~~Lt~PS~d~~g-~v  386 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGD--RDAVLLDT---------------------------RPGLVAPSLDAQG-YV  386 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCC--Ccceeecc---------------------------CCccccCcCcCCC-CE
Confidence            778999998887777666767666544  11111111                           1246667777777 55


Q ss_pred             EEEEeCCCeEEEEeCCC-CCceeee---ecCCCeEEEEEcCCCCEEEEEec---CCeEEEEeCC--CCceecc-------
Q 018806          228 ASASYESSSFTIWDVAQ-GLGTPIR---RGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETN--TWTSEPW-------  291 (350)
Q Consensus       228 ~~~~~d~g~i~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~---d~~v~iwd~~--~~~~~~~-------  291 (350)
                      -+.-..+ ..++..... +....+.   ...+.|..+..|+||-.++....   .+.|+|--+.  .+....+       
T Consensus       387 Wtv~~g~-~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l  465 (557)
T PRK13615        387 WSTPASD-PRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLEL  465 (557)
T ss_pred             EEEeCCC-ceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEc
Confidence            4444332 344443322 3322221   12357999999999998876533   3456654332  2211122       


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEEEeCCCCCC
Q 018806          292 SSTSGFVTGATWDPEGRMILLAF--AGSLTLGSIHFASKPPS  331 (350)
Q Consensus       292 ~~~~~~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~~~  331 (350)
                      ......+.+++|..++..++.+.  +.+..++.+.+.....+
T Consensus       466 ~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~~~~  507 (557)
T PRK13615        466 LASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGPSKD  507 (557)
T ss_pred             ccCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCcccc
Confidence            22234789999999999877763  33356777777654333

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.09  E-value=10  Score=36.50  Aligned_cols=76  Identities=12%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             ccCeeEEEEe--cCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC----C--eEEEEecCCcEEE
Q 018806           99 EVDLQGVSWH--QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG----G--RSLSVGCKGGICI  170 (350)
Q Consensus        99 ~~~V~~v~~s--p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~--~l~~~~~d~~v~i  170 (350)
                      +..+++++++  ...++||++++...|.||-+...+.+....-...+...|-+++|-++.    +  .+++++-.|.+.+
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            4578999999  888999999999999998876432222221122366779999997763    1  3444444699988


Q ss_pred             EecC
Q 018806          171 WAPS  174 (350)
Q Consensus       171 wd~~  174 (350)
                      |++.
T Consensus       243 ~~I~  246 (717)
T PF08728_consen  243 FKIK  246 (717)
T ss_pred             EEEE
Confidence            8883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.39  E-value=39  Score=33.41  Aligned_cols=65  Identities=14%  Similarity=0.107  Sum_probs=41.2

Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeE-------------EEEEcC--CCCEEEEEec----------CCeE
Q 018806          224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-------------ILKWSP--TGDYFFAAKF----------DGTF  278 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~sp--~g~~l~~~~~----------d~~v  278 (350)
                      +..++.++.| |.+.-.|.++|+....+...+.+.             .+.-.|  .+..+++|+.          +|.|
T Consensus       260 ~~rV~~~T~D-g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSD-ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCC-CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            4577778888 699999999998765443322221             111122  1334555532          5889


Q ss_pred             EEEeCCCCcee
Q 018806          279 YLWETNTWTSE  289 (350)
Q Consensus       279 ~iwd~~~~~~~  289 (350)
                      +-+|.++|+..
T Consensus       339 ~A~Da~TGkl~  349 (764)
T TIGR03074       339 RAFDVNTGALV  349 (764)
T ss_pred             EEEECCCCcEe
Confidence            99999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=80.11  E-value=9.6  Score=35.80  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCe--EEEEEcCCCCEEEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILL  312 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~s~~g~~l~~  312 (350)
                      |.|.-+|+.+++.........+...-...-.+..++.++.+|.++.+|.++|+..--......+  .=+.|.-+|++.++
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~  520 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA  520 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence            4678888888876654443322111112224556777888999999999999984322222222  22344456765443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-04
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 233 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Query: 323 I 323
           I
Sbjct: 293 I 293

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 202
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
             AA  D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L
Sbjct: 203 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Query: 319 TLGSI 323
               I
Sbjct: 263 QTKEI 267

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 323 I 323
           I
Sbjct: 274 I 274

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 323 I 323
           I
Sbjct: 274 I 274

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 323 I 323
           I
Sbjct: 271 I 271

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
             AA  D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 319 TLGSI 323
               I
Sbjct: 273 QTKEI 277

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 323 I 323
           I
Sbjct: 271 I 271

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 212 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Query: 323 I 323
           I
Sbjct: 272 I 272

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 228 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Query: 323 I 323
           I
Sbjct: 288 I 288

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 205
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
             AA  D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L
Sbjct: 206 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 319 TLGSI 323
               I
Sbjct: 266 QTKEI 270

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 235 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Query: 323 I 323
           I
Sbjct: 295 I 295

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 216 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Query: 323 I 323
           I
Sbjct: 276 I 276

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 323 I 323
           I
Sbjct: 274 I 274

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 217 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Query: 323 I 323
           I
Sbjct: 277 I 277

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
             AA  D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 319 TLGSI 323
               I
Sbjct: 273 QTKEI 277

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 269 FFAAKFDGTFYLWE 282
             AA  D T  LW+
Sbjct: 210 ILAATLDNTLKLWD 223

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 269 FFAAKFDGTFYLWE 282
             AA  D    LW+
Sbjct: 210 ILAATLDNDLKLWD 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.98
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.88
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.79
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.54
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.49
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.42
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.39
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.35
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.34
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.34
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.29
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.26
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.11
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.11
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.1
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.09
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.05
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.98
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.97
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.96
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.95
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.92
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.91
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.81
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.72
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.61
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.54
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.47
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.44
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.42
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.41
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.36
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.32
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.28
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.24
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.19
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.19
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.14
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.13
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.09
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.06
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.04
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.99
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.93
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.93
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.93
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.9
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.86
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.81
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.76
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.73
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.73
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.69
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.6
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.59
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.59
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.56
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.42
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.38
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.31
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.3
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.29
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.28
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.27
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.26
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.19
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.17
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.82
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.77
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.76
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.61
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.51
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.41
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.35
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.07
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.52
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.93
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.68
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.31
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.74
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.4
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.1
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.5
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.12
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.69
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.39
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.28
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.5
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.26
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.83
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.01
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.3
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.12
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	84.71
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	82.9
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	82.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	81.19
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	80.78

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-32  Score=238.59  Aligned_cols=201  Identities=18%  Similarity=0.357  Sum_probs=167.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++|+|+|++||+|+.|++|+||++.............+|...|.+++|+|+++.|++++.|+++++|++...    
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~----   93 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----   93 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC----
Confidence            4899999999999999999999999999642212223344579999999999999999999999999999998732    


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce----eeeecCCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGG  256 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~----~~~~~~~~  256 (350)
                                         ...+...+.+|. ..|.+++|+|++++|++++.| |+|++||++.+...    .+..|...
T Consensus        94 -------------------~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~h~~~  152 (345)
T 3fm0_A           94 -------------------DFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRD-KSVWVWEVDEEDEYECVSVLNSHTQD  152 (345)
T ss_dssp             --------------------EEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred             -------------------CeEEEEEccCCC-CCceEEEEeCCCCEEEEEECC-CeEEEEECCCCCCeEEEEEecCcCCC
Confidence                               122345677886 799999999999999999999 69999999876432    24457789


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCce---eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                      |.+++|+|++++|++++.|++|++||.++++.   ..+.+|...|++++|+|+|++|++++ ++.+.+|.....
T Consensus       153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence            99999999999999999999999999988753   35678999999999999999999988 666666665544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=238.74  Aligned_cols=240  Identities=17%  Similarity=0.187  Sum_probs=179.7

Q ss_pred             cCeeEEEEecC----CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC
Q 018806          100 VDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp~----g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ..|++++|+|+    +++|++|+.|++|+||++....... .....+|...|.+++|++++..+++++.|++|++||+..
T Consensus        33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~-~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~  111 (321)
T 3ow8_A           33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL-QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN  111 (321)
T ss_dssp             SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee-eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            34999999885    5799999999999999996422122 222358999999999999988888888899999999986


Q ss_pred             CCCCceeecccccccceecCCC----------CCceEEee--------eccCCCCCceeeEEECCCCCeEEEEEeCCCeE
Q 018806          176 PGNAASVRSGAASFLGALSRGP----------GTRWTLVD--------FLRSQNGEQITALSWGPDGRYLASASYESSSF  237 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i  237 (350)
                      ......+... ......+.+.+          ++.+.+++        .+..+. ..+.+++|+|+|++|++++.| |.|
T Consensus       112 ~~~~~~~~~~-~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~lasg~~d-g~i  188 (321)
T 3ow8_A          112 GKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG-KFILSIAYSPDGKYLASGAID-GII  188 (321)
T ss_dssp             TEEEEEEECC-TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS-SCEEEEEECTTSSEEEEEETT-SCE
T ss_pred             CCEEEEEeCC-CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC-ceEEEEEECCCCCEEEEEcCC-CeE
Confidence            5544433322 11222233333          33334333        334443 689999999999999999999 699


Q ss_pred             EEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-
Q 018806          238 TIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-  314 (350)
Q Consensus       238 ~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-  314 (350)
                      ++||+++++... +..|...|.+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+|++|++++ 
T Consensus       189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            999999987655 445788999999999999999999999999999998887 45678999999999999999999887 


Q ss_pred             CCCeEEEEEEeCCCC--CCCceeecccccceee
Q 018806          315 AGSLTLGSIHFASKP--PSLDAHLLPVDLPDIV  345 (350)
Q Consensus       315 ~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~  345 (350)
                      ++.  +..|++....  ..+.+|..+|....+.
T Consensus       269 D~~--v~iwd~~~~~~~~~~~~h~~~v~~v~~s  299 (321)
T 3ow8_A          269 DKS--VKVWDVGTRTCVHTFFDHQDQVWGVKYN  299 (321)
T ss_dssp             TSC--EEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCc--EEEEeCCCCEEEEEEcCCCCcEEEEEEC
Confidence            444  4445544332  2556777777665554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.1e-32  Score=236.98  Aligned_cols=240  Identities=16%  Similarity=0.217  Sum_probs=183.9

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|++++|+|++++|++++.|++|+|||+..  +.....+ ..|...|.+++|+|+++.+++++.|+.+++|++......
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--TNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTT--CCEEEEE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCC--CCcceEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence            4599999999999999999999999999854  5555554 478889999999999999999999999999999754321


Q ss_pred             cee---eccccc--------ccce-ecCCCCCceEEee--------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEE
Q 018806          180 ASV---RSGAAS--------FLGA-LSRGPGTRWTLVD--------FLRSQNGEQITALSWGPDGRYLASASYESSSFTI  239 (350)
Q Consensus       180 ~~~---~~~~~~--------~~~~-~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~i  239 (350)
                      ...   ..+...        +... ++.+.++.+.+|+        .+.+|. ..|.+++|+|++++|++++.| |+|++
T Consensus       133 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~sg~~d-~~v~~  210 (340)
T 1got_B          133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT-GDVMSLSLAPDTRLFVSGACD-ASAKL  210 (340)
T ss_dssp             CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEE
T ss_pred             ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC-CceEEEEECCCCCEEEEEeCC-CcEEE
Confidence            111   111111        1111 3334455555443        466776 799999999999999999999 69999


Q ss_pred             EeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc---CCCCeEEEEEcCCCCEEEEEEC
Q 018806          240 WDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       240 wd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      ||++++.... +..|...|.+++|+|++++|++++.|++|++||+++++......   +...|.+++|+|+|++|++++.
T Consensus       211 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  290 (340)
T 1got_B          211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             EETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence            9999987655 45678899999999999999999999999999999887644333   3347999999999999998874


Q ss_pred             CCeEEEEEEeCCCC--CCCceeecccccceee
Q 018806          316 GSLTLGSIHFASKP--PSLDAHLLPVDLPDIV  345 (350)
Q Consensus       316 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~  345 (350)
                      + ..+..|++....  ..+.+|..+|....+.
T Consensus       291 d-~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s  321 (340)
T 1got_B          291 D-FNCNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             T-SEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             C-CeEEEEEcccCcEeeEeecCCCcEEEEEEc
Confidence            3 245555554333  2567888888766654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.2e-32  Score=233.95  Aligned_cols=193  Identities=16%  Similarity=0.249  Sum_probs=161.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|.+++|+|++++|++|+.|+.|++||+..  ++....+ .+|...|.+++|+|++..+++++.|++|++||+.....  
T Consensus        57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--  131 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--  131 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE--
T ss_pred             cEEEEEEeCCCCEEEEECCCCEEEEEECCC--CcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc--
Confidence            689999999999999999999999999954  5555555 48999999999999998999999999999999973221  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCcee-ee-ecCCCe
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IR-RGFGGL  257 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~-~~~~~v  257 (350)
                                            +...+.+|. ..|.+++|+| ++..|++++.| |+|++||++.+.... +. .+...+
T Consensus       132 ----------------------~~~~~~~h~-~~v~~v~~~p~~~~~l~sgs~D-~~v~iwd~~~~~~~~~~~~~~~~~v  187 (304)
T 2ynn_A          132 ----------------------LEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD-RTVKVWSLGQSTPNFTLTTGQERGV  187 (304)
T ss_dssp             ----------------------EEEEECCCC-SCEEEEEECTTCTTEEEEEETT-SEEEEEETTCSSCSEEEECCCTTCE
T ss_pred             ----------------------hhhhhcccC-CcEEEEEECCCCCCEEEEEeCC-CeEEEEECCCCCccceeccCCcCcE
Confidence                                  234566775 7999999999 67899999999 699999998776543 22 345789


Q ss_pred             EEEEEcC--CCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          258 SILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       258 ~~~~~sp--~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                      ..++|+|  ++++|++++.|++|++||+++++. ..+.+|...|..++|+|++++|++++ ++.+.+|.
T Consensus       188 ~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (304)
T ss_dssp             EEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            9999987  788999999999999999999887 45778999999999999999999887 44444443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.9e-32  Score=235.12  Aligned_cols=202  Identities=15%  Similarity=0.145  Sum_probs=159.1

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~  177 (350)
                      ...|++++|+|+|++|++|+.|++|++||+..  ++....+ .+|...|.+++|+|++.. +++++.|++|++||++..+
T Consensus       127 ~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~  203 (344)
T 4gqb_B          127 DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK  203 (344)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence            45799999999999999999999999999954  5555555 589999999999999865 5567779999999998554


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCcee-eeecCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTP-IRRGFG  255 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~  255 (350)
                      ....+..                       ..+ ...+.+++|+|+ +++|++++.| |+|++||+++++... +..|..
T Consensus       204 ~~~~~~~-----------------------~~~-~~~~~~~~~~p~~~~~l~sg~~d-g~v~~wd~~~~~~~~~~~~h~~  258 (344)
T 4gqb_B          204 PASQIGC-----------------------SAP-GYLPTSLAWHPQQSEVFVFGDEN-GTVSLVDTKSTSCVLSSAVHSQ  258 (344)
T ss_dssp             CEEECC----------------------------CCCEEEEEECSSCTTEEEEEETT-SEEEEEESCC--CCEEEECCSS
T ss_pred             eeeeeec-----------------------cee-eccceeeeecCCCCcceEEeccC-CcEEEEECCCCcEEEEEcCCCC
Confidence            3322111                       122 357899999995 5667888888 799999999987654 556889


Q ss_pred             CeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          256 GLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       256 ~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      .|.+++|+|+| ++|++++.|++|+|||+++++...+.+|...|++++|+|+++.|+++++.+..+..|++...
T Consensus       259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            99999999998 57899999999999999999988888999999999999999866544433345556665543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-31  Score=239.75  Aligned_cols=241  Identities=19%  Similarity=0.280  Sum_probs=187.7

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +..+|++++|+|++++|++|+.|++|+|||+..  +.....+ .+|...|.+++|+|+++.+++++.|++|++||+....
T Consensus       107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~  183 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE  183 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            356899999999999999999999999999964  5554555 5899999999999999999999999999999997543


Q ss_pred             CCceeecccccccce----------ecCCCCCceEEee--------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEE
Q 018806          178 NAASVRSGAASFLGA----------LSRGPGTRWTLVD--------FLRSQNGEQITALSWGPDGRYLASASYESSSFTI  239 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~i  239 (350)
                      ....+. ++...+..          ++.+.++.+.+|+        .+.+|. ..|.++.|+|++++|++++.| |+|++
T Consensus       184 ~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D-~~v~v  260 (410)
T 1vyh_C          184 CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTLIASCSND-QTVRV  260 (410)
T ss_dssp             EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEE
T ss_pred             eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-ccEEEEEECCCCCEEEEEcCC-CeEEE
Confidence            322221 11222222          2333445555444        566775 689999999999999999999 69999


Q ss_pred             EeCCCCCcee-eeecCCCeEEEEEcCC--------------------CCEEEEEecCCeEEEEeCCCCce-eccccCCCC
Q 018806          240 WDVAQGLGTP-IRRGFGGLSILKWSPT--------------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF  297 (350)
Q Consensus       240 wd~~~~~~~~-~~~~~~~v~~~~~sp~--------------------g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~  297 (350)
                      ||+.+++... +..|...|.+++|+|+                    |.+|++|+.|++|++||+++++. ..+.+|...
T Consensus       261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~  340 (410)
T 1vyh_C          261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW  340 (410)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc
Confidence            9999887654 5568889999999996                    67899999999999999999887 456789999


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEEEeCCC--CCCCceeecccccceee
Q 018806          298 VTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~  345 (350)
                      |.+++|+|+|++|++++.+ ..+..|++...  ...+.+|..+|....+.
T Consensus       341 v~~v~~~~~g~~l~s~s~D-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  389 (410)
T 1vyh_C          341 VRGVLFHSGGKFILSCADD-KTLRVWDYKNKRCMKTLNAHEHFVTSLDFH  389 (410)
T ss_dssp             EEEEEECSSSSCEEEEETT-TEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence            9999999999999988733 24444544333  33666788877766554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-31  Score=239.40  Aligned_cols=243  Identities=16%  Similarity=0.280  Sum_probs=190.9

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCC------------------------ccCeeEEEEecCCCEEEEEECCCeEEEEEcc
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLP------------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~------------------------~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~  129 (350)
                      ...+.||.+.+.+..+.|....++.                        ...|++++|+|++++|++|+.|++|+|||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            4567799888888888876443332                        2269999999999999999999999999995


Q ss_pred             CCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccce----------ecCCCCC
Q 018806          130 DSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA----------LSRGPGT  199 (350)
Q Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  199 (350)
                      .  +.....+ .+|...|.+++|+|++..+++++.|++|++||+..+.....+. +....+..          ++.+.++
T Consensus       181 ~--~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          181 G--FECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             S--SCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             C--CceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCCEEEEEcCCC
Confidence            3  4444444 5899999999999999999999999999999998655443332 11112222          2333445


Q ss_pred             ceEEee--------eccCCCCCceeeEEECCC--------------------CCeEEEEEeCCCeEEEEeCCCCCcee-e
Q 018806          200 RWTLVD--------FLRSQNGEQITALSWGPD--------------------GRYLASASYESSSFTIWDVAQGLGTP-I  250 (350)
Q Consensus       200 ~~~~~~--------~~~~~~~~~v~~~~~sp~--------------------g~~l~~~~~d~g~i~iwd~~~~~~~~-~  250 (350)
                      .+.+|+        .+.+|. ..|.+++|+|+                    |.+|++++.| |+|++||++++.... +
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D-~~i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVSTGMCLMTL  334 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCceeeEecCCC-ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-CeEEEEECCCCceEEEE
Confidence            555554        456675 68999999996                    6689999999 699999999987654 5


Q ss_pred             eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                      ..|...|.+++|+|+|++|++++.|++|++||+++++. ..+..|...|++++|+|++.+|++++ ++.+.+|.
T Consensus       335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            56888999999999999999999999999999998876 45678999999999999999999887 44445443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=230.14  Aligned_cols=192  Identities=18%  Similarity=0.250  Sum_probs=164.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+.+++|+|++++|++++.|+.+++|++..  +.....+ ..|...|.+++|+|+++.+++++.|+.|++||+....   
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~--~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---  197 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVES--GKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---  197 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTT--CSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCC--CceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---
Confidence            578899999999999999999999999964  4444444 4678889999999999999999999999999997332   


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  259 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~  259 (350)
                                            +...+.+|. ..|.+++|+|++++|++++.| |+|++||++++.... +..|...|.+
T Consensus       198 ----------------------~~~~~~~h~-~~v~~l~~spd~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~h~~~v~~  253 (321)
T 3ow8_A          198 ----------------------LLHTLEGHA-MPIRSLTFSPDSQLLVTASDD-GYIKIYDVQHANLAGTLSGHASWVLN  253 (321)
T ss_dssp             ----------------------EEEEECCCS-SCCCEEEECTTSCEEEEECTT-SCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             ----------------------EEEEEcccC-CceeEEEEcCCCCEEEEEcCC-CeEEEEECCCcceeEEEcCCCCceEE
Confidence                                  244566775 699999999999999999999 699999999887654 4568889999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                      ++|+|++++|++++.|++|++||+++++. ..+..|...|.+++|+|+|++|++++ ++.+.+|+
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            99999999999999999999999999887 45678999999999999999999887 44444443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=228.03  Aligned_cols=218  Identities=17%  Similarity=0.174  Sum_probs=168.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCcee-EecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ...|.+++|+|++ .|++|+.||+|+|||+......... ....+|.+.|++++|+|+|+.+++++.|++|++||+..+.
T Consensus        82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            3469999999985 6779999999999999653322221 2234799999999999999999999999999999998432


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCCCceeee---ec
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPIR---RG  253 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~~~~~~~---~~  253 (350)
                                               +...+.+|. ..|.+++|+|++. .|++++.| |+|++||+++++.....   .+
T Consensus       161 -------------------------~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~  213 (344)
T 4gqb_B          161 -------------------------VLSSYRAHA-AQVTCVAASPHKDSVFLSCSED-NRILLWDTRCPKPASQIGCSAP  213 (344)
T ss_dssp             -------------------------EEEEECCCS-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTSSSCEEECC----
T ss_pred             -------------------------EEEEEcCcC-CceEEEEecCCCCCceeeeccc-cccccccccccceeeeeeccee
Confidence                                     355677886 7999999999985 57888888 69999999998766543   23


Q ss_pred             CCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEEEeCCCC
Q 018806          254 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-MILLAF-AGSLTLGSIHFASKP  329 (350)
Q Consensus       254 ~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~~~~~~~~~~~~  329 (350)
                      ...+.+++|+|+ +++|++|+.|++|++||+++++. ..+..|...|++++|+|+|. +|++++ ++.  +..|++....
T Consensus       214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~--i~vwd~~~~~  291 (344)
T 4gqb_B          214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS--LAVLDSSLSE  291 (344)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC--EEEECTTCCE
T ss_pred             eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCc
Confidence            456899999995 56789999999999999999887 56778999999999999985 677666 443  4444444332


Q ss_pred             -CCCceeecccccceeec
Q 018806          330 -PSLDAHLLPVDLPDIVS  346 (350)
Q Consensus       330 -~~~~~~~~~v~~~~~~~  346 (350)
                       ..+.+|..+|....+++
T Consensus       292 ~~~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          292 LFRSQAHRDFVRDATWSP  309 (344)
T ss_dssp             EEEECCCSSCEEEEEECS
T ss_pred             EEEEcCCCCCEEEEEEeC
Confidence             25568888887776653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.98  E-value=9e-31  Score=224.89  Aligned_cols=214  Identities=14%  Similarity=0.200  Sum_probs=171.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++|+|++++|++++.||.|++||+..  +.....+ ..|..+|.+++|+|+++.+++++.|++|++||+.....  
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~--   89 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYET--QVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--   89 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCC--CceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE--
Confidence            499999999999999999999999999954  5555554 47889999999999999999999999999999984432  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--eeeecCCCeE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLS  258 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--~~~~~~~~v~  258 (350)
                                             ...+.+|. ..|.+++|+|++++|++++.| |+|++||++++...  .+..|...|.
T Consensus        90 -----------------------~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D-~~v~lWd~~~~~~~~~~~~~h~~~v~  144 (304)
T 2ynn_A           90 -----------------------VVDFEAHP-DYIRSIAVHPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEHFVM  144 (304)
T ss_dssp             -----------------------EEEEECCS-SCEEEEEECSSSSEEEEEETT-SCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred             -----------------------EEEEeCCC-CcEEEEEEcCCCCEEEEECCC-CeEEEEECCCCcchhhhhcccCCcEE
Confidence                                   34466776 799999999999999999999 69999999887433  3456889999


Q ss_pred             EEEEcC-CCCEEEEEecCCeEEEEeCCCCcee-cc-ccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEEEeCCCC--CC
Q 018806          259 ILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-PW-SSTSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKP--PS  331 (350)
Q Consensus       259 ~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~~-~~-~~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~~~~~~~~--~~  331 (350)
                      +++|+| ++..|++++.|++|++||+++++.. .+ ..+...+..+.|+|  ++++|++++.+ ..+..|++....  ..
T Consensus       145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D-~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-LTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT-SEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC-CeEEEEeCCCCcccee
Confidence            999999 6789999999999999999877653 22 35667889999987  77889888733 345555554432  35


Q ss_pred             Cceeecccccceee
Q 018806          332 LDAHLLPVDLPDIV  345 (350)
Q Consensus       332 ~~~~~~~v~~~~~~  345 (350)
                      +.+|..+|....+.
T Consensus       224 ~~~h~~~v~~~~~~  237 (304)
T 2ynn_A          224 LEGHMSNVSFAVFH  237 (304)
T ss_dssp             EECCSSCEEEEEEC
T ss_pred             eCCCCCCEEEEEEC
Confidence            66787777655544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=2.5e-30  Score=221.42  Aligned_cols=199  Identities=15%  Similarity=0.238  Sum_probs=159.7

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..|++++|+|+|++||+|+.|++|+||++.....+....+ .+|.+.|.+++|+|+  +..+++++.|++|++||+..+.
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence            3599999999999999999999999999964334444444 589999999999864  6788888889999999997432


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCCC---ceeeee
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRR  252 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~~---~~~~~~  252 (350)
                      ..                       ....+.+|. ..|.+++|+|+  |.+|++++.| |+|++||++++.   ...+..
T Consensus        89 ~~-----------------------~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~d-~~v~~wd~~~~~~~~~~~~~~  143 (297)
T 2pm7_B           89 WS-----------------------QIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSD-GKVSVVEFKENGTTSPIIIDA  143 (297)
T ss_dssp             BC-----------------------CCEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEEBCSSSCBCCEEEEC
T ss_pred             eE-----------------------EEEEeecCC-CceeEEEeCcCCCCcEEEEEECC-CcEEEEEecCCCceeeeeeec
Confidence            11                       122345565 68999999997  8999999999 699999998763   234556


Q ss_pred             cCCCeEEEEEcCC-------------CCEEEEEecCCeEEEEeCCCCc----e-eccccCCCCeEEEEEcCCC---CEEE
Q 018806          253 GFGGLSILKWSPT-------------GDYFFAAKFDGTFYLWETNTWT----S-EPWSSTSGFVTGATWDPEG---RMIL  311 (350)
Q Consensus       253 ~~~~v~~~~~sp~-------------g~~l~~~~~d~~v~iwd~~~~~----~-~~~~~~~~~v~~~~~s~~g---~~l~  311 (350)
                      |...+.+++|+|+             +++|++++.|++|++||+++++    . ..+.+|...|.+++|+|++   ++|+
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            8889999999997             5799999999999999998765    2 3566899999999999995   7888


Q ss_pred             EEE-CCCeEEEEEE
Q 018806          312 LAF-AGSLTLGSIH  324 (350)
Q Consensus       312 ~~~-~~~~~~~~~~  324 (350)
                      +++ ++.+.+|.++
T Consensus       224 s~s~D~~v~iWd~~  237 (297)
T 2pm7_B          224 SVSQDRTCIIWTQD  237 (297)
T ss_dssp             EEETTSCEEEEEES
T ss_pred             EEECCCcEEEEEeC
Confidence            777 5555555543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.98  E-value=3.4e-30  Score=222.78  Aligned_cols=193  Identities=16%  Similarity=0.148  Sum_probs=163.7

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|.+++|+|+|++|++++.|++|+|||+..  ++....+ .+|...|.+++|+|++..+++++.|++|++||+.. .  
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~--  139 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-Q--  139 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-C--
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCC--CCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-C--
Confidence            3689999999999999999999999999954  5555554 58999999999999999999999999999999862 1  


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC------CCeEEEEEeCCCeEEEEeCCCCCcee-eee
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGLGTP-IRR  252 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~  252 (350)
                                             ....+.+|. ..|.+++|+|.      +..|++++.| |+|++||+++.+... +..
T Consensus       140 -----------------------~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~  194 (319)
T 3frx_A          140 -----------------------CLATLLGHN-DWVSQVRVVPNEKADDDSVTIISAGND-KMVKAWNLNQFQIEADFIG  194 (319)
T ss_dssp             -----------------------EEEEECCCS-SCEEEEEECCC------CCEEEEEETT-SCEEEEETTTTEEEEEECC
T ss_pred             -----------------------eEEEEeccC-CcEEEEEEccCCCCCCCccEEEEEeCC-CEEEEEECCcchhheeecC
Confidence                                   133456675 68999999985      4489999999 699999999887554 556


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                      |...|.+++|+|+|++|++++.|+.|++||+.+++......+...|.+++|+|++.+|+++.++.+.++.+
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~  265 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL  265 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEe
Confidence            88999999999999999999999999999999988865555667899999999999999888776666654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.98  E-value=2.3e-30  Score=226.22  Aligned_cols=196  Identities=15%  Similarity=0.206  Sum_probs=157.6

Q ss_pred             eeEEEE-----ec-CCCEEEEEECCCeEEEEEccCCCC----CceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEE
Q 018806          102 LQGVSW-----HQ-HKHIVAFISGSTQVIVRDYEDSEG----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  171 (350)
Q Consensus       102 V~~v~~-----sp-~g~~la~~s~d~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw  171 (350)
                      |++++|     ++ ++++|++|+.|++|++|++.....    ........+|...|.+++|+|++..+++++.|++|++|
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lw  103 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW  103 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEE
T ss_pred             hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            899999     66 999999999999999999864321    11223335899999999999998888999999999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR  251 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~  251 (350)
                      |+....                         ....+.+|. ..|.+++|+|++++|++++.| |+|++||+.........
T Consensus       104 d~~~~~-------------------------~~~~~~~h~-~~v~~v~~sp~~~~l~s~~~d-~~i~~wd~~~~~~~~~~  156 (343)
T 2xzm_R          104 DLRTGT-------------------------TYKRFVGHQ-SEVYSVAFSPDNRQILSAGAE-REIKLWNILGECKFSSA  156 (343)
T ss_dssp             ETTSSC-------------------------EEEEEECCC-SCEEEEEECSSTTEEEEEETT-SCEEEEESSSCEEEECC
T ss_pred             ECCCCc-------------------------EEEEEcCCC-CcEEEEEECCCCCEEEEEcCC-CEEEEEeccCCceeeee
Confidence            998432                         234466775 799999999999999999999 69999999844333222


Q ss_pred             ---ecCCCeEEEEEcCCC----------CEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCe
Q 018806          252 ---RGFGGLSILKWSPTG----------DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL  318 (350)
Q Consensus       252 ---~~~~~v~~~~~sp~g----------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~  318 (350)
                         .|...+.+++|+|++          .+|++++.|+.|++||........+..|...|.+++|+|+|++|++++.+ .
T Consensus       157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d-g  235 (343)
T 2xzm_R          157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD-K  235 (343)
T ss_dssp             TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-C
T ss_pred             cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCC-C
Confidence               467789999999987          78999999999999996543345677899999999999999999988733 2


Q ss_pred             EEEEEEe
Q 018806          319 TLGSIHF  325 (350)
Q Consensus       319 ~~~~~~~  325 (350)
                      .+..|++
T Consensus       236 ~v~iwd~  242 (343)
T 2xzm_R          236 KLLIWDI  242 (343)
T ss_dssp             EEEEEES
T ss_pred             eEEEEEC
Confidence            4455555

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-30  Score=223.62  Aligned_cols=203  Identities=15%  Similarity=0.289  Sum_probs=157.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC-CCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .|++++|+|+  +||+|+.|++|++|++..........+..+ |...|.+++|+|+++.+++++.|++|++||+......
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~   93 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR   93 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence            4999999998  999999999999999964322333344234 9999999999999988889999999999998632110


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC-C---ce-eeeecC
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-L---GT-PIRRGF  254 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~-~---~~-~~~~~~  254 (350)
                      .                  ....+...+.+|. ..|.+++|+|+|++|++++.| |+|++||++.. .   .. .+..|.
T Consensus        94 ~------------------~~~~~~~~~~~h~-~~V~~v~~sp~g~~las~s~D-~~v~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X           94 T------------------FEMDLLAIIEGHE-NEVKGVAWSNDGYYLATCSRD-KSVWIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             -------------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT-SCEEEEECCTTCCCCEEEEEECCCS
T ss_pred             c------------------ccceeEEEEcCCC-CcEEEEEECCCCCEEEEEeCC-CEEEEEeccCCCCCeEEEEEeccCC
Confidence            0                  0122355677886 799999999999999999999 69999999533 2   22 345688


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc--e-eccccCCCCeEEEEEcCC--CCEEEEEE-CCCeEEEEEEe
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPE--GRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~--~-~~~~~~~~~v~~~~~s~~--g~~l~~~~-~~~~~~~~~~~  325 (350)
                      ..|.+++|+|++++|++++.|++|++||..++.  . ..+.+|...|.+++|+|+  +.+|++++ ++.+.+|.+.-
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            899999999999999999999999999998763  2 456789999999999999  67888887 66667776654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=2.9e-30  Score=242.51  Aligned_cols=225  Identities=17%  Similarity=0.218  Sum_probs=169.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC----CcEEEEecC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPS  174 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~  174 (350)
                      ...|++++|+|+|++||+|+.|++|+|||+...+......+ .+|.+.|.+++|+|+++.+++++.+    +.|++||..
T Consensus        59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~  137 (611)
T 1nr0_A           59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG  137 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred             CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC
Confidence            34599999999999999999999999999864333333333 4789999999999999888888765    478888854


Q ss_pred             CC-----CCCceeecccccccce---ecCCCCCceEEe--------eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEE
Q 018806          175 YP-----GNAASVRSGAASFLGA---LSRGPGTRWTLV--------DFLRSQNGEQITALSWGPDGRYLASASYESSSFT  238 (350)
Q Consensus       175 ~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~  238 (350)
                      ..     ++...+....+.+...   ++.+.++.+.+|        ..+.+|. ..|.+++|+|+|++|++++.| |+|+
T Consensus       138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~-~~V~~v~fspdg~~las~s~D-~~i~  215 (611)
T 1nr0_A          138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT-KFVHSVRYNPDGSLFASTGGD-GTIV  215 (611)
T ss_dssp             CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEE
T ss_pred             CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc-CceEEEEECCCCCEEEEEECC-CcEE
Confidence            21     1222222223333221   223334444444        4567786 799999999999999999999 6999


Q ss_pred             EEeCCCCCceeee--------ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee---------------------
Q 018806          239 IWDVAQGLGTPIR--------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---------------------  289 (350)
Q Consensus       239 iwd~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~---------------------  289 (350)
                      +||+.+++.....        .|.+.|.+++|+|+|++|++++.|++|++||+++++..                     
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  295 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence            9999988765543        57889999999999999999999999999999887542                     


Q ss_pred             -----------------------ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          290 -----------------------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       290 -----------------------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                                             .+.+|...|++++|+|+|++|++++.+. .+..|++..
T Consensus       296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~-~v~~Wd~~~  355 (611)
T 1nr0_A          296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG-HINSWDIST  355 (611)
T ss_dssp             CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTT
T ss_pred             EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC-cEEEEECCC
Confidence                                   1236888999999999999999887332 455555543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=5.5e-30  Score=224.90  Aligned_cols=197  Identities=15%  Similarity=0.154  Sum_probs=160.1

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ...|++++|+|++++|++++.|+.|++||+..  ++....+ .+|...|++++|+|++. .+++++.|+.|++||+....
T Consensus       139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~  215 (357)
T 4g56_B          139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK  215 (357)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence            45799999999999999999999999999953  5555555 57999999999999875 56677779999999998544


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCCCcee-eeecCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTP-IRRGFG  255 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~  255 (350)
                      ....+.                       +..+ ...+.+++|+|++ .+|++++.| |.|++||+++++... +..|..
T Consensus       216 ~~~~~~-----------------------~~~~-~~~v~~v~~sp~~~~~la~g~~d-~~i~~wd~~~~~~~~~~~~~~~  270 (357)
T 4g56_B          216 PATRID-----------------------FCAS-DTIPTSVTWHPEKDDTFACGDET-GNVSLVNIKNPDSAQTSAVHSQ  270 (357)
T ss_dssp             CBCBCC-----------------------CTTC-CSCEEEEEECTTSTTEEEEEESS-SCEEEEESSCGGGCEEECCCSS
T ss_pred             eeeeee-----------------------eccc-cccccchhhhhcccceEEEeecc-cceeEEECCCCcEeEEEeccce
Confidence            332211                       1222 3679999999985 567788888 699999999987655 446788


Q ss_pred             CeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEE
Q 018806          256 GLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP-EGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       256 ~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~-~~~~~~~~~  323 (350)
                      .|.+++|+|++ ++|++++.|++|+|||+++++......|...|++++|+| ++++|++++ |+.+.+|.+
T Consensus       271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          271 NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            99999999987 578999999999999999999888889999999999998 799999887 444444443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=7.4e-30  Score=223.14  Aligned_cols=223  Identities=17%  Similarity=0.254  Sum_probs=172.1

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+|+|++||+++.|++++||++..........+ .+|...|.+++|+|+++.+++++.|++|++||+.....
T Consensus        61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A           61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred             CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence            34699999999999999999999999999864332333333 58999999999999999999999999999999974322


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce---eeeecCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~---~~~~~~~  255 (350)
                                            ..+...+.+|. ..|.+++|+|++++|++++.| |+|++||.+.+...   .+..|..
T Consensus       140 ----------------------~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d-~~i~~w~~~~~~~~~~~~~~~h~~  195 (345)
T 3fm0_A          140 ----------------------YECVSVLNSHT-QDVKHVVWHPSQELLASASYD-DTVKLYREEEDDWVCCATLEGHES  195 (345)
T ss_dssp             ----------------------EEEEEEECCCC-SCEEEEEECSSSSCEEEEETT-SCEEEEEEETTEEEEEEEECCCSS
T ss_pred             ----------------------eEEEEEecCcC-CCeEEEEECCCCCEEEEEeCC-CcEEEEEecCCCEEEEEEecCCCC
Confidence                                  12344566775 689999999999999999999 69999999877532   3556889


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce----------------eccc-cCCCCeEEEEEcCCCCEEEEEE-CCC
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----------------EPWS-STSGFVTGATWDPEGRMILLAF-AGS  317 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~----------------~~~~-~~~~~v~~~~~s~~g~~l~~~~-~~~  317 (350)
                      .|.+++|+|+|++|++++.|++|++||......                ..+. .|...|.+++|+|++..|++++ ++.
T Consensus       196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  275 (345)
T 3fm0_A          196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA  275 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence            999999999999999999999999999743221                1112 2778899999999999999888 555


Q ss_pred             eEEEEEEeCCCCC--C-------Cceeecccccceeec
Q 018806          318 LTLGSIHFASKPP--S-------LDAHLLPVDLPDIVS  346 (350)
Q Consensus       318 ~~~~~~~~~~~~~--~-------~~~~~~~v~~~~~~~  346 (350)
                      +.+|.++....+.  .       ..+|..+|....+.+
T Consensus       276 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          276 IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             EEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred             EEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence            5555554332211  1       236677776655543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=4.1e-29  Score=217.96  Aligned_cols=244  Identities=13%  Similarity=0.134  Sum_probs=184.2

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCC------------------------ccCeeEEEEecCCCEEEEEECCCeEEEEEcc
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLP------------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~------------------------~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~  129 (350)
                      ...+.||.+.+....+.|+...++.                        ...|.+++|+|++++|++++.|+.+++|++.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~  127 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence            3456677666666666655433322                        2358999999999999999999999999996


Q ss_pred             CCCCC-ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceec----------CCCC
Q 018806          130 DSEGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS----------RGPG  198 (350)
Q Consensus       130 ~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~  198 (350)
                      ...+. .......+|.+.|.++.|+++ ..+++++.|++|++||+........+. +....+..+.          .+.+
T Consensus       128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          128 TREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             TCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEEEEeCC
Confidence            53322 222233579999999999998 568889999999999998554333222 2222222222          2334


Q ss_pred             CceEEee--------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCC
Q 018806          199 TRWTLVD--------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGD  267 (350)
Q Consensus       199 ~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~  267 (350)
                      +.+.+|+        .+.+|. ..|.+++|+|++++|++++.| |+|++||+++++......+.   ..+.+++|+|+|+
T Consensus       206 ~~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNAFATGSDD-ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             SCEEEEETTTCSEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CcEEEEECCCCeeEEEEcCCc-CCEEEEEEcCCCCEEEEEcCC-CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence            4455444        456675 689999999999999999999 69999999988766554443   4799999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          268 YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       268 ~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      +|++|+.|+.|++||+.+++. ..+.+|...|.+++|+|+|++|++++ ++.+.+|
T Consensus       284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            999999999999999998877 45778999999999999999999987 5555554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=1.8e-30  Score=230.01  Aligned_cols=241  Identities=15%  Similarity=0.204  Sum_probs=177.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+|++++|++|+.|++|+|||+..  +.....+ ..|...|.+++|+|+|+.+++++.|+.+++|++.....
T Consensus        66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~--~~~~~~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~  142 (380)
T 3iz6_a           66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--SQKTHAI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD  142 (380)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSEEEEEETTT--TEEEEEE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred             ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CccceEE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence            34699999999999999999999999999854  5555555 47899999999999999999999999999999864221


Q ss_pred             ------Cceeecccccccc-----------eecCCCCCceEEeee--------c-----cCCCCCceeeEEECC-CCCeE
Q 018806          179 ------AASVRSGAASFLG-----------ALSRGPGTRWTLVDF--------L-----RSQNGEQITALSWGP-DGRYL  227 (350)
Q Consensus       179 ------~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--------~-----~~~~~~~v~~~~~sp-~g~~l  227 (350)
                            ......++...+.           -++.+.++.+.+|+.        +     .+|. ..|.+++|++ ++.+|
T Consensus       143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT-ADVLSLSINSLNANMF  221 (380)
T ss_dssp             CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC-SCEEEEEECSSSCCEE
T ss_pred             ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc-cCeEEEEeecCCCCEE
Confidence                  1111111111111           233445566666542        1     3454 6899999987 88999


Q ss_pred             EEEEeCCCeEEEEeCCCC-Cc-eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-c-------CCCC
Q 018806          228 ASASYESSSFTIWDVAQG-LG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-S-------TSGF  297 (350)
Q Consensus       228 ~~~~~d~g~i~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~-------~~~~  297 (350)
                      ++++.| |+|++||++.. .. ..+..|.+.|.+++|+|+|++|++++.|++|++||+++++..... .       +...
T Consensus       222 ~sgs~D-~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          222 ISGSCD-TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EEEETT-SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred             EEEECC-CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence            999999 69999999843 33 345678899999999999999999999999999999998764322 1       2235


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC------CCceeecccccceee
Q 018806          298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPP------SLDAHLLPVDLPDIV  345 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~  345 (350)
                      |++++|+|+|++|++++.+ ..+..|+......      ...+|..+|....+.
T Consensus       301 v~~~~~s~~g~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s  353 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSN-GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS  353 (380)
T ss_dssp             CSEEEECSSSSEEEEECTT-SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred             eEEEEECCCCCEEEEEECC-CCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence            8999999999999988632 3455555433221      125788877766654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=4.5e-30  Score=221.72  Aligned_cols=221  Identities=14%  Similarity=0.203  Sum_probs=163.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee--CCCeEEEEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      .|++++|+|+|++||+|+.|++|+|||+..........+ .+|...|.+++|+|  +++.|++++.|++|++||+..+..
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~   93 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW   93 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence            499999999999999999999999999964221222333 58999999999986  378899999999999999985431


Q ss_pred             Cc-eeecccccccceecCC------------CCCceEEee-----------eccCCCCCceeeEEECCC-----------
Q 018806          179 AA-SVRSGAASFLGALSRG------------PGTRWTLVD-----------FLRSQNGEQITALSWGPD-----------  223 (350)
Q Consensus       179 ~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~-----------~~~~~~~~~v~~~~~sp~-----------  223 (350)
                      .. ....+....+..+.+.            .++.+.+++           .+.+|. ..+.+++|+|+           
T Consensus        94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~  172 (316)
T 3bg1_A           94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPS  172 (316)
T ss_dssp             CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS-SCBCCCEECCCCCC------CC
T ss_pred             eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc-CCcceEEEccccCCcccccccc
Confidence            11 1112222233333332            334444432           334564 68999999997           


Q ss_pred             ------CCeEEEEEeCCCeEEEEeCCCCC---c-eeeeecCCCeEEEEEcCCC----CEEEEEecCCeEEEEeCCCCc--
Q 018806          224 ------GRYLASASYESSSFTIWDVAQGL---G-TPIRRGFGGLSILKWSPTG----DYFFAAKFDGTFYLWETNTWT--  287 (350)
Q Consensus       224 ------g~~l~~~~~d~g~i~iwd~~~~~---~-~~~~~~~~~v~~~~~sp~g----~~l~~~~~d~~v~iwd~~~~~--  287 (350)
                            +++|++++.| |+|++||++...   . ..+..|...|.+++|+|++    ++|++++.|++|++||+++..  
T Consensus       173 ~~~~~~~~~l~sgs~D-~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~  251 (316)
T 3bg1_A          173 GQKPNYIKRFASGGCD-NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN  251 (316)
T ss_dssp             SCCCCCCCBEECCBTT-SBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred             ccCccccceEEEecCC-CeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc
Confidence                  4789999999 699999997552   2 2345688899999999986    789999999999999998732  


Q ss_pred             ---eeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          288 ---SEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       288 ---~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                         ...+..|...|++++|+|+|++|++++ ++.+.+|...
T Consensus       252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          252 TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence               123456888999999999999999887 5555555543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=2.9e-30  Score=226.48  Aligned_cols=243  Identities=13%  Similarity=0.161  Sum_probs=180.1

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCCc------------------------cCeeEEEEecCCCEEEEEECCCeEEEEEcc
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLPE------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~~------------------------~~V~~v~~sp~g~~la~~s~d~~i~iw~~~  129 (350)
                      ...+.||.+.+....+.|+...++.+                        ..|.+++|+|+|++||+++.|+.+++|++.
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            45677887777666666654433321                        136677777777777777777777777764


Q ss_pred             CCCC----CceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEee
Q 018806          130 DSEG----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD  205 (350)
Q Consensus       130 ~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (350)
                      ....    .....+ ..|...|.+++|+|++..+++++.|++|++||+....                         +..
T Consensus       137 ~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-------------------------~~~  190 (354)
T 2pbi_B          137 FDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-------------------------LLQ  190 (354)
T ss_dssp             CCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------------------EEE
T ss_pred             ccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-------------------------EEE
Confidence            3211    111222 3688999999999998899999999999999998433                         244


Q ss_pred             eccCCCCCceeeEEECC--CCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEe
Q 018806          206 FLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  282 (350)
Q Consensus       206 ~~~~~~~~~v~~~~~sp--~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd  282 (350)
                      .+.+|. ..|.+++|+|  +|+.|++++.| |+|++||+++++... +..|...|.+++|+|++++|++++.|++|++||
T Consensus       191 ~~~~h~-~~v~~~~~~~~~~g~~l~sgs~D-g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd  268 (354)
T 2pbi_B          191 SFHGHG-ADVLCLDLAPSETGNTFVSGGCD-KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD  268 (354)
T ss_dssp             EEECCS-SCEEEEEECCCSSCCEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEcCCC-CCeEEEEEEeCCCCCEEEEEeCC-CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            566775 6899999987  57899999999 799999999988765 445788999999999999999999999999999


Q ss_pred             CCCCceeccc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC--CCCceeecccccceee
Q 018806          283 TNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIV  345 (350)
Q Consensus       283 ~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~  345 (350)
                      +++++.....   .+...+.+++|+|+|++|++++.+ ..+..|++....  ..+.+|..+|....+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s  335 (354)
T 2pbi_B          269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-YTINVWDVLKGSRVSILFGHENRVSTLRVS  335 (354)
T ss_dssp             TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred             CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-CcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence            9988764333   233478999999999999988733 234445543322  2566788888766654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=3e-30  Score=229.67  Aligned_cols=212  Identities=18%  Similarity=0.264  Sum_probs=167.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++|+|+|++||+|+.|+.|+|||+..  ++....+ .+|...|.+++|+|+++.+++++.|++|++||+.....  
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~--~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--  199 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--  199 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--
Confidence            489999999999999999999999999953  4444444 58999999999999999999999999999999984322  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCCceee--------e
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI--------R  251 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~~~~~--------~  251 (350)
                                             ...+.. . ..+.+++|+| ++++|++++.| |+|++||++++.....        .
T Consensus       200 -----------------------~~~~~~-~-~~v~~~~~~~~~~~~l~~~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~  253 (393)
T 1erj_A          200 -----------------------SLTLSI-E-DGVTTVAVSPGDGKYIAAGSLD-RAVRVWDSETGFLVERLDSENESGT  253 (393)
T ss_dssp             -----------------------EEEEEC-S-SCEEEEEECSTTCCEEEEEETT-SCEEEEETTTCCEEEEEC------C
T ss_pred             -----------------------EEEEEc-C-CCcEEEEEECCCCCEEEEEcCC-CcEEEEECCCCcEEEeecccccCCC
Confidence                                   111222 2 5799999999 89999999999 6999999998875433        3


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-------------eccccCCCCeEEEEEcCCCCEEEEEECCCe
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAFAGSL  318 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-------------~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~  318 (350)
                      .|...|.+++|+|+|++|++++.|+.|++||+++...             ..+.+|...|.+++|+|++++|++++.+ .
T Consensus       254 ~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-~  332 (393)
T 1erj_A          254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-R  332 (393)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-S
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-C
Confidence            5678899999999999999999999999999976432             2455788999999999999999988743 2


Q ss_pred             EEEEEEeCCCCC--CCceeeccccccee
Q 018806          319 TLGSIHFASKPP--SLDAHLLPVDLPDI  344 (350)
Q Consensus       319 ~~~~~~~~~~~~--~~~~~~~~v~~~~~  344 (350)
                      .+..|+.....+  .+.+|..+|....+
T Consensus       333 ~v~iwd~~~~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          333 GVLFWDKKSGNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             eEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence            455566554332  55678777765544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=9.6e-30  Score=219.17  Aligned_cols=196  Identities=18%  Similarity=0.317  Sum_probs=163.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|++++|+|++++|++++.|+.|++|++..  ++....+ .+|...|.+++|+|+++.+++++.|+.|++||+..... 
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-   99 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC-   99 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cccchhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE-
Confidence            3499999999999999999999999999853  5554444 58999999999999999999999999999999984332 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                                              ...+.+|. ..|.+++|+|++++|++++.| |+|++||+++++... +..|...+.
T Consensus       100 ------------------------~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~  153 (312)
T 4ery_A          100 ------------------------LKTLKGHS-NYVFCCNFNPQSNLIVSGSFD-ESVRIWDVKTGKCLKTLPAHSDPVS  153 (312)
T ss_dssp             ------------------------EEEEECCS-SCEEEEEECSSSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             ------------------------EEEEcCCC-CCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCEEEEEecCCCCcEE
Confidence                                    34456665 689999999999999999999 699999999887654 445778999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceec-c-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +++|+|++++|++++.|+.|++||+++++... + ..+...+..++|+|++++|++++.+. .+..|++.
T Consensus       154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~  222 (312)
T 4ery_A          154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYS  222 (312)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT-EEEEEETT
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC-eEEEEECC
Confidence            99999999999999999999999999988743 2 35567899999999999999887332 44555544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=7.6e-29  Score=215.67  Aligned_cols=232  Identities=14%  Similarity=0.196  Sum_probs=170.2

Q ss_pred             cchhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecC-CCEEEEEECCCeEEEEEccCCCCC--ceeEecCCCCCCee
Q 018806           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVK  148 (350)
Q Consensus        72 ~~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~-g~~la~~s~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~  148 (350)
                      .|..+|+||.+.                  |++|+|+|+ +++||+|+.|++|+|||+......  .......+|...|.
T Consensus        29 ~l~~tL~GH~~~------------------V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~   90 (340)
T 4aow_A           29 TLRGTLKGHNGW------------------VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS   90 (340)
T ss_dssp             EEEEEECCCSSC------------------EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE
T ss_pred             EEEEEECCccCC------------------EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE
Confidence            345667888655                  999999998 689999999999999999643221  12223358999999


Q ss_pred             EEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeec------------------------------------------cc
Q 018806          149 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS------------------------------------------GA  186 (350)
Q Consensus       149 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~------------------------------------------~~  186 (350)
                      +++|+|+++.+++++.|+.|++|+............                                          ..
T Consensus        91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~  170 (340)
T 4aow_A           91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH  170 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred             EEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccc
Confidence            999999999999999999999999872211110000                                          00


Q ss_pred             ccccceec------------CCCCCceE--------EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC
Q 018806          187 ASFLGALS------------RGPGTRWT--------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL  246 (350)
Q Consensus       187 ~~~~~~~~------------~~~~~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~  246 (350)
                      ...+..+.            .+.++.+.        +...+.+|. ..|.+++|+|++++|++++.| |+|++||+++.+
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D-g~i~iwd~~~~~  248 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKD-GQAMLWDLNEGK  248 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-CEEEEEETTTTE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC-CcEEEEEECCCCCEEEEEeCC-CeEEEEEeccCc
Confidence            00000011            11122222        233556675 799999999999999999999 699999999998


Q ss_pred             ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec----------cccCCCCeEEEEEcCCCCEEEEEE-C
Q 018806          247 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----------WSSTSGFVTGATWDPEGRMILLAF-A  315 (350)
Q Consensus       247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~~~-~  315 (350)
                      ......+...+.+++|+|++.++ +++.|+.|++||++++....          ...|...|++++|+|+|++|++++ +
T Consensus       249 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          249 HLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             EEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            88777788899999999998655 55679999999999876421          236788999999999999999987 5


Q ss_pred             CCeEEEEEE
Q 018806          316 GSLTLGSIH  324 (350)
Q Consensus       316 ~~~~~~~~~  324 (350)
                      +.+.+|.+.
T Consensus       328 g~v~iW~~~  336 (340)
T 4aow_A          328 NLVRVWQVT  336 (340)
T ss_dssp             SCEEEEEEE
T ss_pred             CEEEEEeCC
Confidence            556666554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=5.2e-29  Score=217.57  Aligned_cols=197  Identities=14%  Similarity=0.247  Sum_probs=157.3

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|.+++|+|++.+|++++.|++|++||+..  ++....+ .+|...|.+++|+|+++.+++++.|++|++||+. ...
T Consensus        76 ~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~  151 (343)
T 2xzm_R           76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GEC  151 (343)
T ss_dssp             SSCEEEEEECSSTTEEEEEETTSEEEEEETTS--SCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCc
Confidence            34599999999999999999999999999954  5555555 4899999999999999999999999999999986 211


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC----------CeEEEEEeCCCeEEEEeCCCCCce
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG----------RYLASASYESSSFTIWDVAQGLGT  248 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g----------~~l~~~~~d~g~i~iwd~~~~~~~  248 (350)
                      ...                      .....+|. ..|.+++|+|++          .+|++++.| |+|++||.......
T Consensus       152 ~~~----------------------~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~  207 (343)
T 2xzm_R          152 KFS----------------------SAEKENHS-DWVSCVRYSPIMKSANKVQPFAPYFASVGWD-GRLKVWNTNFQIRY  207 (343)
T ss_dssp             EEE----------------------CCTTTSCS-SCEEEEEECCCCCSCSCCCSSCCEEEEEETT-SEEEEEETTTEEEE
T ss_pred             eee----------------------eecccCCC-ceeeeeeeccccccccccCCCCCEEEEEcCC-CEEEEEcCCCceeE
Confidence            100                      01122454 689999999987          689999999 79999995543334


Q ss_pred             eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc-eeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 018806          249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       249 ~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                      .+..|...|.+++|+|+|++|++++.|+.|++||+.... ......+...|.+++|+|++++|+++.++.+.+|.+
T Consensus       208 ~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~  283 (343)
T 2xzm_R          208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNL  283 (343)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEES
T ss_pred             EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEe
Confidence            566788999999999999999999999999999995443 333444567799999999999998777776555544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=3.5e-30  Score=232.25  Aligned_cols=201  Identities=12%  Similarity=0.131  Sum_probs=158.4

Q ss_pred             cCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..|++++||| ++++||+|+.||.|+|||+...+..... ...+|.+.|++++|+| ++..|++++.|++|++||++.. 
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-  197 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-  197 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-
Confidence            4699999999 5679999999999999999754333222 2347999999999998 5678888888999999998722 


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCe
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                      ....                      ......+ ...+.+++|+|++++|++++.| |.|++||++......+..|...|
T Consensus       198 ~~~~----------------------~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d-g~i~~wd~~~~~~~~~~~h~~~v  253 (435)
T 4e54_B          198 ILRV----------------------FASSDTI-NIWFCSLDVSASSRMVVTGDNV-GNVILLNMDGKELWNLRMHKKKV  253 (435)
T ss_dssp             EEEE----------------------EECCSSC-SCCCCCEEEETTTTEEEEECSS-SBEEEEESSSCBCCCSBCCSSCE
T ss_pred             ceeE----------------------EeccCCC-CccEEEEEECCCCCEEEEEeCC-CcEeeeccCcceeEEEecccceE
Confidence            1111                      1111122 2467899999999999999999 79999999876666677889999


Q ss_pred             EEEEEcCCCC-EEEEEecCCeEEEEeCCCCcee----ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          258 SILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       258 ~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                      .+++|+|+++ +|++++.|+.|++||+++.+..    ....|...|++++|+|+|++|++++ ++.+.+|.+..+
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            9999999986 6788999999999999887652    2347889999999999999999988 555666555433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=7.6e-29  Score=217.42  Aligned_cols=193  Identities=19%  Similarity=0.270  Sum_probs=161.7

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ...|.+++|+|+++.|++++.|++|++||+..  ++....+ .+|...|.+++|+|+  +..+++++.|+.|++||++..
T Consensus       154 ~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~  230 (354)
T 2pbi_B          154 TNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG  230 (354)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            44699999999999999999999999999954  5555555 489999999999874  568888888999999999843


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec---
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---  253 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~---  253 (350)
                      .                         +...+.+|. ..|.+++|+|+++.|++++.| |+|++||++.+........   
T Consensus       231 ~-------------------------~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D-~~v~lwd~~~~~~~~~~~~~~~  283 (354)
T 2pbi_B          231 Q-------------------------CVQAFETHE-SDVNSVRYYPSGDAFASGSDD-ATCRLYDLRADREVAIYSKESI  283 (354)
T ss_dssp             C-------------------------EEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCTTC
T ss_pred             c-------------------------EEEEecCCC-CCeEEEEEeCCCCEEEEEeCC-CeEEEEECCCCcEEEEEcCCCc
Confidence            3                         234466675 799999999999999999999 6999999998866554433   


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      ...+.+++|+|+|++|++++.|+.|++||+.+++. ..+.+|...|++++|+|+|++|++++ ++.+.+|
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            24688999999999999999999999999988876 45678999999999999999999987 4434443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=3e-29  Score=233.95  Aligned_cols=240  Identities=20%  Similarity=0.306  Sum_probs=181.7

Q ss_pred             hhhhhhhhhhccccccCCCCcCCCC-----------------------ccCeeEEEEecCCCEEEEEECCCeEEEEEccC
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLLP-----------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED  130 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~~-----------------------~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~  130 (350)
                      ...+.||...+....+.|+...++.                       ...|.+++|+|+|++|++++.|+.+++|+.. 
T Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-  374 (577)
T 2ymu_A          296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-  374 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence            4456677777666666665333221                       2368999999999999999999999999963 


Q ss_pred             CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCC----------Cc
Q 018806          131 SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG----------TR  200 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  200 (350)
                        ++....+ .+|...|.+++|+|+++.+++++.|+.|++||.. .+....+ ......+..+.++++          +.
T Consensus       375 --~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~  449 (577)
T 2ymu_A          375 --GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKT  449 (577)
T ss_dssp             --CCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             --CCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence              4444444 4799999999999999999999999999999965 2222222 222233333444333          33


Q ss_pred             eEEe-------eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe
Q 018806          201 WTLV-------DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       201 ~~~~-------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  273 (350)
                      +.++       ..+.+|. ..|.+++|+|++++|++++.| |+|++||........+..|...|.+++|+|+|++|++++
T Consensus       450 v~~w~~~~~~~~~~~~~~-~~v~~~~~spd~~~las~~~d-~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  527 (577)
T 2ymu_A          450 VKLWNRNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS  527 (577)
T ss_dssp             EEEEETTSCEEEEEECCS-SCEEEEEECTTSCEEEEEETT-SEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEECCCCEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCC-CEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence            3333       3556775 799999999999999999999 699999975444455667889999999999999999999


Q ss_pred             cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          274 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       274 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      .|+.|++||........+.+|...|++++|+|||++|++++ |+.+.+|
T Consensus       528 ~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          528 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            99999999975444467789999999999999999999887 4444443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.1e-29  Score=214.50  Aligned_cols=198  Identities=12%  Similarity=0.145  Sum_probs=163.5

Q ss_pred             eeEEEEecCC-CEEEEEECCCeEEEEEccCCCCC--ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          102 LQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       102 V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      |++++|+|++ ++|++|+.|++|++|++......  .......+|...|.+++|+|+++.+++++.|++|++||+..+. 
T Consensus        20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-   98 (319)
T 3frx_A           20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-   98 (319)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-
T ss_pred             EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-
Confidence            9999999965 89999999999999998632221  1122335899999999999999999999999999999998432 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeE
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  258 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~  258 (350)
                                              ....+.+|. ..|.+++|+|++++|++++.| |+|++||++......+..|...+.
T Consensus        99 ------------------------~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D-~~i~vwd~~~~~~~~~~~h~~~v~  152 (319)
T 3frx_A           99 ------------------------TYQRFVGHK-SDVMSVDIDKKASMIISGSRD-KTIKVWTIKGQCLATLLGHNDWVS  152 (319)
T ss_dssp             ------------------------EEEEEECCS-SCEEEEEECTTSCEEEEEETT-SCEEEEETTSCEEEEECCCSSCEE
T ss_pred             ------------------------eeEEEccCC-CcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeEEEEeccCCcEE
Confidence                                    244567776 799999999999999999999 699999998766666778889999


Q ss_pred             EEEEcCC------CCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          259 ILKWSPT------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       259 ~~~~sp~------g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +++|+|.      +..|++++.|+.|++||+++++. ..+.+|...|.+++|+|+|++|++++.+ ..+..|++..
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~i~iwd~~~  227 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD-GEIMLWNLAA  227 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT-CEEEEEETTT
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCC
Confidence            9999985      44899999999999999998876 4567899999999999999999988733 2455555543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=1.3e-29  Score=222.64  Aligned_cols=225  Identities=15%  Similarity=0.215  Sum_probs=162.6

Q ss_pred             CCCccCeeEEEEecCCCEEEEEEC------CCeEEEEEccCCCCC-ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcE
Q 018806           96 LLPEVDLQGVSWHQHKHIVAFISG------STQVIVRDYEDSEGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI  168 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g~~la~~s~------d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v  168 (350)
                      ..+...|++++|||||++||+++.      |+.+++|+....... .......+|...|.+++|+|+ +.+++++.|++|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEECCCEE
Confidence            345667999999999999999997      778888887432211 111222358889999999999 578888889999


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  248 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~  248 (350)
                      +|||+..++.....                     .....+|. ..|++++|+|++++|++++.| |+|++||+++++..
T Consensus       118 ~lWd~~~~~~~~~~---------------------~~~~~~h~-~~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~~~~  174 (357)
T 4g56_B          118 ELWEILEKESLLVN---------------------KFAKYEHD-DIVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQKAVL  174 (357)
T ss_dssp             EEC--------CCC---------------------CEEECCCS-SCEEEEEECSSSSEEEEEETT-SCEEEEETTTTEEE
T ss_pred             EEeeccccceeEEE---------------------eeccCCCC-CCEEEEEECCCCCEEEEEeCC-CeEEEEECCCCcEE
Confidence            99999854332111                     11134564 799999999999999999999 69999999998766


Q ss_pred             e-eeecCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCceec---cccCCCCeEEEEEcCCC-CEEEEEECCCeEEEE
Q 018806          249 P-IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEG-RMILLAFAGSLTLGS  322 (350)
Q Consensus       249 ~-~~~~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~  322 (350)
                      . +..|...|.+++|+|++. ++++++.|+.|++||+++++...   ...+...+.+++|+|++ .+|++++. +..+..
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~-d~~i~~  253 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE-TGNVSL  253 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES-SSCEEE
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec-ccceeE
Confidence            5 446789999999999875 68899999999999999987643   34567789999999986 45666552 234444


Q ss_pred             EEeCC--CCCCCceeecccccceee
Q 018806          323 IHFAS--KPPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       323 ~~~~~--~~~~~~~~~~~v~~~~~~  345 (350)
                      |++..  ....+.+|..+|....+.
T Consensus       254 wd~~~~~~~~~~~~~~~~v~~l~~s  278 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQNITGLAYS  278 (357)
T ss_dssp             EESSCGGGCEEECCCSSCEEEEEEC
T ss_pred             EECCCCcEeEEEeccceeEEEEEEc
Confidence            55443  333666787777766554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.8e-30  Score=227.43  Aligned_cols=222  Identities=16%  Similarity=0.203  Sum_probs=166.9

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..+|++++|+|++++||+++.|+.|+||++..........+ .+|...|.+++|+|+++.+++++.|+.|++||+.....
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            34699999999999999999999999999964211333333 57999999999999999999999999999999985431


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC----ceeeee-c
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRR-G  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~----~~~~~~-~  253 (350)
                      ..                      ....+.+|. ..|.+++|+|++++|++++.| |.|++||+++++    ...+.. |
T Consensus        90 ~~----------------------~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           90 WK----------------------QTLVLLRLN-RAATFVRWSPNEDKFAVGSGA-RVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             CC----------------------CEEECCCCS-SCEEEEECCTTSSCCEEEESS-SCEEECCC-----CCCCEEECSSC
T ss_pred             ee----------------------eeeEecccC-CceEEEEECCCCCEEEEEecC-CeEEEEEECCcccceeeeEeeccc
Confidence            11                      123355565 799999999999999999999 699999999886    234455 7


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC------------------ceeccccCCCCeEEEEEcCCCCEEEEEE-
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW------------------TSEPWSSTSGFVTGATWDPEGRMILLAF-  314 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  314 (350)
                      ...|.+++|+|++++|++++.|+.|++||++..                  +......|...|.+++|+|+|++|++++ 
T Consensus       146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence            899999999999999999999999999999632                  2222228889999999999999999887 


Q ss_pred             CCCeEEEEEEeCCC----CCCCceeecccccceee
Q 018806          315 AGSLTLGSIHFASK----PPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       315 ~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~  345 (350)
                      ++.+.+|.+.....    ...+.+|..+|....+.
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (377)
T 3dwl_C          226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA  260 (377)
T ss_dssp             TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred             CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc
Confidence            44455555554444    34667788777766554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=1.1e-28  Score=211.20  Aligned_cols=199  Identities=17%  Similarity=0.300  Sum_probs=156.1

Q ss_pred             cCeeEEEEecC--CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCC
Q 018806          100 VDLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp~--g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ..|++++|+++  +++||+++.|++|+|||+..........+ ..|...|.+++|+|+  +..+++++.|++|++||+..
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            34999999864  89999999999999999964322233333 478999999999997  77888888899999999974


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-------------CCeEEEEEeCCCeEEEEeC
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-------------GRYLASASYESSSFTIWDV  242 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-------------g~~l~~~~~d~g~i~iwd~  242 (350)
                      .....                       ...+.+|. ..|.+++|+|+             +++|++++.| |+|++||+
T Consensus       133 ~~~~~-----------------------~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-~~v~lwd~  187 (297)
T 2pm7_B          133 NGTTS-----------------------PIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-NLVKIWKY  187 (297)
T ss_dssp             SSCBC-----------------------CEEEECCS-SCEEEEEECCCC------------CCEEEEEETT-SCEEEEEE
T ss_pred             CCcee-----------------------eeeeeccc-CccceEeecCCcccccccCCCCCCcceEEEEcCC-CcEEEEEE
Confidence            32211                       11245565 68999999997             5789999999 69999999


Q ss_pred             CCCCc----e-eeeecCCCeEEEEEcCCC---CEEEEEecCCeEEEEeCCCCce----ecc--ccCCCCeEEEEEcCCCC
Q 018806          243 AQGLG----T-PIRRGFGGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTS----EPW--SSTSGFVTGATWDPEGR  308 (350)
Q Consensus       243 ~~~~~----~-~~~~~~~~v~~~~~sp~g---~~l~~~~~d~~v~iwd~~~~~~----~~~--~~~~~~v~~~~~s~~g~  308 (350)
                      +++..    . .+..|...|.+++|+|++   ++|++++.|++|+|||+++...    ..+  ..|...|.+++|+|+|+
T Consensus       188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (297)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence            87652    2 345688999999999985   8899999999999999987531    122  46778899999999999


Q ss_pred             EEEEEE-CCCeEEEEEE
Q 018806          309 MILLAF-AGSLTLGSIH  324 (350)
Q Consensus       309 ~l~~~~-~~~~~~~~~~  324 (350)
                      +|++++ ++.+.+|...
T Consensus       268 ~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          268 VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEETTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEC
Confidence            999887 5555555543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.2e-28  Score=214.50  Aligned_cols=207  Identities=14%  Similarity=0.234  Sum_probs=153.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCC-ceeEecCCCCCCeeEEEEee--CCCeEEEEecCCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK-DACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ..|++++|+|++++||+++.||.|++|++...... .......+|...|.+++|+|  ++..+++++.|+.|++||+...
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence            45999999999999999999999999999743322 12223347999999999999  5788888889999999999854


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCCC--------
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL--------  246 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~~--------  246 (350)
                      .....                ...+.....+..|. ..|.+++|+|+  +++|++++.| |.|++||+++++        
T Consensus        92 ~~~~~----------------~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~  153 (351)
T 3f3f_A           92 QEECS----------------GRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGND-GILRLYDALEPSDLRSWTLT  153 (351)
T ss_dssp             SCTTS----------------SCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-CEEEEEECSSTTCTTCCEEE
T ss_pred             ccccc----------------ccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCC-CcEEEecCCChHHhcccccc
Confidence            32110                01223344455554 57777777777  7777777777 577777765442        


Q ss_pred             --------------------------------------------------c---eeeeecCCCeEEEEEcCCC----CEE
Q 018806          247 --------------------------------------------------G---TPIRRGFGGLSILKWSPTG----DYF  269 (350)
Q Consensus       247 --------------------------------------------------~---~~~~~~~~~v~~~~~sp~g----~~l  269 (350)
                                                                        .   ..+..|...|.+++|+|++    ++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence                                                              1   1122467789999999998    899


Q ss_pred             EEEecCCeEEEEeCCCCc----------------------------------------------e-eccccCCCCeEEEE
Q 018806          270 FAAKFDGTFYLWETNTWT----------------------------------------------S-EPWSSTSGFVTGAT  302 (350)
Q Consensus       270 ~~~~~d~~v~iwd~~~~~----------------------------------------------~-~~~~~~~~~v~~~~  302 (350)
                      ++++.||.|++||++++.                                              . ..+..|...|++++
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  313 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS  313 (351)
T ss_dssp             EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence            999999999999998741                                              1 23457889999999


Q ss_pred             EcCCCCEEEEEE-CCCeEEEEEE
Q 018806          303 WDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       303 ~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      |+|+|++|++++ ++.+.+|.+.
T Consensus       314 ~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EcCCCCEEEEecCCCcEEEEecC
Confidence            999999999888 5445555444

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1.3e-28  Score=219.01  Aligned_cols=197  Identities=19%  Similarity=0.267  Sum_probs=161.5

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-----------------CCCCCeeEEEEeeCCCeEE
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----------------DSQRDVKVLEWRPNGGRSL  160 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~sp~~~~l~  160 (350)
                      +...|.+++|+|||++||+++ ++.++||++..  +.....+..                 .+...|.+++|+|+|+.++
T Consensus        63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD--GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT--CCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecC--CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            455799999999999999976 68899999954  544444321                 1122489999999999999


Q ss_pred             EEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE
Q 018806          161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW  240 (350)
Q Consensus       161 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw  240 (350)
                      +++.|+.|++||+....                         ....+.+|. ..|.+++|+|++++|++++.| |+|++|
T Consensus       140 s~~~d~~i~iwd~~~~~-------------------------~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d-~~v~iw  192 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRK-------------------------IVMILQGHE-QDIYSLDYFPSGDKLVSGSGD-RTVRIW  192 (393)
T ss_dssp             EEETTSCEEEEETTTTE-------------------------EEEEECCCS-SCEEEEEECTTSSEEEEEETT-SEEEEE
T ss_pred             EEcCCCeEEEEECCCCc-------------------------EEEEEccCC-CCEEEEEEcCCCCEEEEecCC-CcEEEE
Confidence            99999999999997332                         244567776 799999999999999999999 699999


Q ss_pred             eCCCCCceeeeecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCCceec-c-------ccCCCCeEEEEEcCCCCEEE
Q 018806          241 DVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEP-W-------SSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       241 d~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~~~-~-------~~~~~~v~~~~~s~~g~~l~  311 (350)
                      |+++++......+...+.+++|+| ++++|++++.|+.|++||+++++... +       ..|...|.+++|+|+|++|+
T Consensus       193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence            999998777777788999999999 89999999999999999999987632 2       46888999999999999999


Q ss_pred             EEE-CCCeEEEEEE
Q 018806          312 LAF-AGSLTLGSIH  324 (350)
Q Consensus       312 ~~~-~~~~~~~~~~  324 (350)
                      +++ ++.+.+|.++
T Consensus       273 s~s~d~~v~~wd~~  286 (393)
T 1erj_A          273 SGSLDRSVKLWNLQ  286 (393)
T ss_dssp             EEETTSEEEEEEC-
T ss_pred             EEeCCCEEEEEECC
Confidence            887 5545555544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.2e-28  Score=229.93  Aligned_cols=237  Identities=19%  Similarity=0.273  Sum_probs=181.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|.+++|+|++++|++++.|+.|++|+..   +.....+ .+|...|.+++|+|+++.+++++.|+.+++||.. ....
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~---~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~  378 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL  378 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCC---CCeeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE
Confidence            379999999999999999999999999975   3334444 5789999999999999999888889999999965 2222


Q ss_pred             ceeecccccccceecCCCC----------CceEE-------eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC
Q 018806          180 ASVRSGAASFLGALSRGPG----------TRWTL-------VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~----------~~~~~-------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~  242 (350)
                      ..+ ......+..+.++++          +.+.+       ...+.+|. ..|++++|+|++++|++++.| |+|++||.
T Consensus       379 ~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~d-~~v~~w~~  455 (577)
T 2ymu_A          379 QTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVWGVAFSPDDQTIASASDD-KTVKLWNR  455 (577)
T ss_dssp             EEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SEEEEEET
T ss_pred             EEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCC-CCeEEEEECCCCCEEEEEcCC-CEEEEEEC
Confidence            222 222223333333333          33333       34566775 799999999999999999999 69999998


Q ss_pred             CCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       243 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      .......+..|...+.+++|+|++++|++++.|+.|++||........+..|...|++++|+|+|++|++++.+. .+..
T Consensus       456 ~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~v~l  534 (577)
T 2ymu_A          456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKL  534 (577)
T ss_dssp             TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-EEEE
T ss_pred             CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC-EEEE
Confidence            655555677788999999999999999999999999999975444467889999999999999999999887432 4444


Q ss_pred             EEeCCCC-CCCceeecccccceee
Q 018806          323 IHFASKP-PSLDAHLLPVDLPDIV  345 (350)
Q Consensus       323 ~~~~~~~-~~~~~~~~~v~~~~~~  345 (350)
                      |+..... ..+.+|..+|....+.
T Consensus       535 wd~~~~~~~~~~~h~~~v~~~~fs  558 (577)
T 2ymu_A          535 WNRNGQLLQTLTGHSSSVWGVAFS  558 (577)
T ss_dssp             ECTTSCEEEEEECCSSCEEEEEEC
T ss_pred             EeCCCCEEEEEcCCCCCEEEEEEc
Confidence            4443322 2566888888766654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.2e-28  Score=217.11  Aligned_cols=197  Identities=15%  Similarity=0.130  Sum_probs=152.0

Q ss_pred             cCeeEEEEecCCCEEEEEE--CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..+++++|||||++||+++  .|++|+|||+..  ++....+  .|...|.+++|+|||+.+++++ ++.+++|+...+.
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~--~~~~~~~--~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~  208 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSD--LTEKFEI--ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGS  208 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEETTT--TEEEEEE--ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCC
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC--CcEEEEe--CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCc
Confidence            3589999999999987665  689999999954  5555554  4778899999999976665554 6667777766333


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC---eEEEEeCCCCCce-----e
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS---SFTIWDVAQGLGT-----P  249 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g---~i~iwd~~~~~~~-----~  249 (350)
                      ..                       .......|. ..|.+++|+|+++.+++++.+++   .+++|++......     .
T Consensus       209 ~~-----------------------~~~~~~~~~-~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~  264 (365)
T 4h5i_A          209 CI-----------------------ARKTDFDKN-WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ  264 (365)
T ss_dssp             EE-----------------------EEECCCCTT-EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred             ce-----------------------eeeecCCCC-CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence            21                       112233444 68999999999999999998832   6888998776532     2


Q ss_pred             eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec--cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          250 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       250 ~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +..|...|.+++|+|||++||+|+.|++|+|||+++++...  +.+|...|++++|||||++|++++.+ ..+..|++.
T Consensus       265 ~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D-~tvrvw~ip  342 (365)
T 4h5i_A          265 VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA-NTIHIIKLP  342 (365)
T ss_dssp             EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT-SEEEEEECC
T ss_pred             ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC-CeEEEEEcC
Confidence            44577899999999999999999999999999999998743  45899999999999999999988732 244445543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=4.1e-28  Score=227.89  Aligned_cols=218  Identities=17%  Similarity=0.218  Sum_probs=169.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...+.+++|+|||++||+++ ++.+++|++..  +.....+ .+|...|++++|+|+|+++++++.|++|+|||+.....
T Consensus        18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~--~~~~~~~-~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~   93 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS--LTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   93 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTC--SSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             cCceeEEeeCCCCCEEEeCC-CCEEEEecCCC--cccCeEe-cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence            44678899999999999987 56999999953  4444544 58999999999999999999999999999999864333


Q ss_pred             Cc-eeecccccccceecCCCCCceE--------------Ee------eeccCCCCCceeeEEECCCCC-eEEEEEeCCCe
Q 018806          179 AA-SVRSGAASFLGALSRGPGTRWT--------------LV------DFLRSQNGEQITALSWGPDGR-YLASASYESSS  236 (350)
Q Consensus       179 ~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~  236 (350)
                      .. .........+..++++++++..              ++      ..+.+|. ..|.+++|+|++. .|++++.| ++
T Consensus        94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~-~~v~~v~f~p~~~~~l~s~s~D-~~  171 (611)
T 1nr0_A           94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA-RAMNSVDFKPSRPFRIISGSDD-NT  171 (611)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS-SCEEEEEECSSSSCEEEEEETT-SC
T ss_pred             eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCC-CCceEEEECCCCCeEEEEEeCC-Ce
Confidence            21 1122233344555555554322              22      2456776 7999999999987 58999999 69


Q ss_pred             EEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cc-------cCCCCeEEEEEcCCC
Q 018806          237 FTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-------STSGFVTGATWDPEG  307 (350)
Q Consensus       237 i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~-------~~~~~v~~~~~s~~g  307 (350)
                      |++||..+++... +..|...|.+++|+|+|++|++++.|++|++||+.+++... +.       .|...|.+++|+|+|
T Consensus       172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg  251 (611)
T 1nr0_A          172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  251 (611)
T ss_dssp             EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             EEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence            9999998876544 45688999999999999999999999999999999887743 31       689999999999999


Q ss_pred             CEEEEEE-CCCeEEEE
Q 018806          308 RMILLAF-AGSLTLGS  322 (350)
Q Consensus       308 ~~l~~~~-~~~~~~~~  322 (350)
                      ++|++++ ++.+.+|+
T Consensus       252 ~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          252 TKIASASADKTIKIWN  267 (611)
T ss_dssp             SEEEEEETTSEEEEEE
T ss_pred             CEEEEEeCCCeEEEEe
Confidence            9999887 44344443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-28  Score=215.24  Aligned_cols=199  Identities=16%  Similarity=0.273  Sum_probs=163.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      .|++++|+|++++||+++.||.|+||++...+......+ .+|...|++++|+|+  +..+++++.|+.|++||+.... 
T Consensus        13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-   90 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-   90 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE-
T ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-
Confidence            499999999999999999999999999974344444444 579999999999977  7889999999999999998322 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCCCc---eeeeec
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRG  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~~~---~~~~~~  253 (350)
                                            +.....+..|. ..|.+++|+|+  +++|++++.| |.|++||++.+..   ..+..|
T Consensus        91 ----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~  146 (379)
T 3jrp_A           91 ----------------------WSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD-GKVSVVEFKENGTTSPIIIDAH  146 (379)
T ss_dssp             ----------------------EEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEECCTTSCCCEEEEECC
T ss_pred             ----------------------eeEeeeecCCC-cceEEEEeCCCCCCCEEEEecCC-CcEEEEecCCCCceeeEEecCC
Confidence                                  22344456665 79999999999  9999999999 6999999998743   234567


Q ss_pred             CCCeEEEEEcC-------------CCCEEEEEecCCeEEEEeCCCCce-----eccccCCCCeEEEEEcCC---CCEEEE
Q 018806          254 FGGLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMILL  312 (350)
Q Consensus       254 ~~~v~~~~~sp-------------~g~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~s~~---g~~l~~  312 (350)
                      ...+.+++|+|             ++++|++++.|+.|++||+++++.     ..+..|...|.+++|+|+   +++|++
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s  226 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  226 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence            88999999999             699999999999999999987653     245578999999999999   888888


Q ss_pred             EE-CCCeEEEEEEe
Q 018806          313 AF-AGSLTLGSIHF  325 (350)
Q Consensus       313 ~~-~~~~~~~~~~~  325 (350)
                      ++ ++.+.+|.++.
T Consensus       227 ~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          227 VSQDRTCIIWTQDN  240 (379)
T ss_dssp             EETTSCEEEEEESS
T ss_pred             EeCCCEEEEEeCCC
Confidence            87 55555555443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-28  Score=210.34  Aligned_cols=203  Identities=18%  Similarity=0.292  Sum_probs=153.9

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCC----CCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEec
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  173 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~  173 (350)
                      +...|++++|+|++++||+++.|++|+||++....    .........+|...|.+++|+|+++.|++++.|++|++||+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            34569999999999999999999999999985321    11122333589999999999999999999999999999999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC--ce-ee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GT-PI  250 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~--~~-~~  250 (350)
                      ...+.                     .+.+...+.+|. ..|.+++|+|++++|++++.| |+|++||..++.  +. .+
T Consensus       137 ~~~~~---------------------~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D-~~i~iW~~~~~~~~~~~~~  193 (330)
T 2hes_X          137 DESGE---------------------EYECISVLQEHS-QDVKHVIWHPSEALLASSSYD-DTVRIWKDYDDDWECVAVL  193 (330)
T ss_dssp             CTTCC---------------------CCEEEEEECCCS-SCEEEEEECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEE
T ss_pred             cCCCC---------------------CeEEEEEeccCC-CceEEEEECCCCCEEEEEcCC-CeEEEEECCCCCeeEEEEc
Confidence            53221                     122345577776 699999999999999999999 699999987763  32 34


Q ss_pred             eecCCCeEEEEEcCC--CCEEEEEecCCeEEEEeCCCCc--------e-ecccc-CCCCeEEEEEcCCCCEEEEEE-CCC
Q 018806          251 RRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWT--------S-EPWSS-TSGFVTGATWDPEGRMILLAF-AGS  317 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~--g~~l~~~~~d~~v~iwd~~~~~--------~-~~~~~-~~~~v~~~~~s~~g~~l~~~~-~~~  317 (350)
                      ..|...|.+++|+|+  +.+|++++.|++|++||++++.        . ..+.. |...|.+++|++++ +|++++ ++.
T Consensus       194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~  272 (330)
T 2hes_X          194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV  272 (330)
T ss_dssp             CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred             cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE
Confidence            568899999999998  7789999999999999997642        1 12333 88899999999776 666666 655


Q ss_pred             eEEEEEE
Q 018806          318 LTLGSIH  324 (350)
Q Consensus       318 ~~~~~~~  324 (350)
                      +.+|...
T Consensus       273 v~iw~~~  279 (330)
T 2hes_X          273 LAVYEEV  279 (330)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcC
Confidence            6666543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=2.3e-27  Score=205.78  Aligned_cols=218  Identities=13%  Similarity=0.139  Sum_probs=177.2

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +...|.+++|+|++++|++++.|+.|++|++..........+ ..|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus        96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            345799999999999999999999999999965332233333 4788899999999998889988899999999998432


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCe
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                                               ....+..|. ..+.+++|+|++++|++++.+ |.|++||+++++......+...+
T Consensus       175 -------------------------~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~v  227 (337)
T 1gxr_A          175 -------------------------LVRQFQGHT-DGASCIDISNDGTKLWTGGLD-NTVRSWDLREGRQLQQHDFTSQI  227 (337)
T ss_dssp             -------------------------EEEEECCCS-SCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECSSCE
T ss_pred             -------------------------eeeeeeccc-CceEEEEECCCCCEEEEEecC-CcEEEEECCCCceEeeecCCCce
Confidence                                     233455665 689999999999999999999 69999999999887777788999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC-CCceee
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHL  336 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  336 (350)
                      .+++|+|++++|++++.++.|++||+++++...+..|...|.+++|+|++++|++++.+ ..+..|++..... ....|.
T Consensus       228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~  306 (337)
T 1gxr_A          228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGASIFQSKES  306 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECS
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC-CcEEEEECCCCeEEEEecCC
Confidence            99999999999999999999999999999888888899999999999999999988743 3566666654332 222455


Q ss_pred             ccccccee
Q 018806          337 LPVDLPDI  344 (350)
Q Consensus       337 ~~v~~~~~  344 (350)
                      .++....+
T Consensus       307 ~~v~~~~~  314 (337)
T 1gxr_A          307 SSVLSCDI  314 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEE
Confidence            55544443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=7.1e-28  Score=213.42  Aligned_cols=210  Identities=14%  Similarity=0.152  Sum_probs=163.0

Q ss_pred             ccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCCceeEec-CCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCC
Q 018806           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus        99 ~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ...|++++|+|++ ++||+|+.|+.|+|||+..  +.....+. .+|...|.+++|+| ++..+++++.|+.|++||+..
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV--QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG  150 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS--TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC--cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence            4569999999999 9999999999999999964  44444443 36999999999999 667777788899999999982


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCC
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG  255 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~  255 (350)
                       .....                      ......+. ..|.+++|+|++++|++++.| |.|++||++......+..|..
T Consensus       151 -~~~~~----------------------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~h~~  205 (383)
T 3ei3_B          151 -SVIQV----------------------FAKTDSWD-YWYCCVDVSVSRQMLATGDST-GRLLLLGLDGHEIFKEKLHKA  205 (383)
T ss_dssp             -CEEEE----------------------EECCCCSS-CCEEEEEEETTTTEEEEEETT-SEEEEEETTSCEEEEEECSSS
T ss_pred             -CceEE----------------------EeccCCCC-CCeEEEEECCCCCEEEEECCC-CCEEEEECCCCEEEEeccCCC
Confidence             21111                      11122332 679999999999999999999 699999996544455667889


Q ss_pred             CeEEEEEcCCCC-EEEEEecCCeEEEEeCCC----CceeccccCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEEEeCCC
Q 018806          256 GLSILKWSPTGD-YFFAAKFDGTFYLWETNT----WTSEPWSSTSGFVTGATWDP-EGRMILLAF-AGSLTLGSIHFASK  328 (350)
Q Consensus       256 ~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~-~~~~~~~~~~~~~~  328 (350)
                      .|.+++|+|+++ +|++++.|+.|++||+++    ++......|...|.+++|+| +|++|++++ ++.+.+|.++....
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            999999999999 899999999999999998    44555557999999999999 999999887 44444444433333


Q ss_pred             CCCCcee
Q 018806          329 PPSLDAH  335 (350)
Q Consensus       329 ~~~~~~~  335 (350)
                      ...+..|
T Consensus       286 ~~~~~~~  292 (383)
T 3ei3_B          286 PDQIIIH  292 (383)
T ss_dssp             CSEEEEC
T ss_pred             ccccccc
Confidence            3333333

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=1.5e-27  Score=210.16  Aligned_cols=225  Identities=12%  Similarity=0.161  Sum_probs=170.9

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +..+|++++|+|++++|++++.|+.|++|++..........+ .+|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            355799999999999999999999999999964211144444 4799999999999999999999999999999997443


Q ss_pred             CCceee-cccccccceecCC----------CCCceEEee-----------ec-cCCCCCceeeEEECCCCCeEEEEEeCC
Q 018806          178 NAASVR-SGAASFLGALSRG----------PGTRWTLVD-----------FL-RSQNGEQITALSWGPDGRYLASASYES  234 (350)
Q Consensus       178 ~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~-----------~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~  234 (350)
                      ...... ......+..+.+.          .++.+.+++           .+ ..| ...|.+++|+|++++|++++.| 
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d-  163 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCD-  163 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC-CSCEEEEEECTTSSEEEEEETT-
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc-CCCeeEEEEcCCCCEEEEEcCC-
Confidence            221111 1111222222222          233333322           22 334 4789999999999999999999 


Q ss_pred             CeEEEEeCC------------------CCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccC
Q 018806          235 SSFTIWDVA------------------QGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSST  294 (350)
Q Consensus       235 g~i~iwd~~------------------~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~  294 (350)
                      |.|++||++                  .++... +..|...+.+++|+|++++|++++.|+.|++||+++++. ..+..|
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  243 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence            699999964                  344433 335778899999999999999999999999999998887 456678


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       295 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ...|.+++|+|++++|+++.++.+.+|.+.-
T Consensus       244 ~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          244 TLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             SCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            8899999999999999988677777777765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3e-27  Score=207.55  Aligned_cols=239  Identities=15%  Similarity=0.158  Sum_probs=180.9

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++|+|++++|++++.|+.|++||+..  ++....+ .+|...|.+++|+|+++.+++++.|+.|++||+.......
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  110 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLGTL-DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA  110 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTT--CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhhhh-hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            499999999999999999999999999854  5555555 5799999999999999999999999999999998665444


Q ss_pred             eeecccccccceecCCCC---------------CceEEeeec-------------------cCCC-CCceeeEEECCCCC
Q 018806          181 SVRSGAASFLGALSRGPG---------------TRWTLVDFL-------------------RSQN-GEQITALSWGPDGR  225 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-------------------~~~~-~~~v~~~~~sp~g~  225 (350)
                      .+.  ....+..+.+.++               +.+.+++.-                   ..+. ...+.+++|+|+++
T Consensus       111 ~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (369)
T 3zwl_B          111 TWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK  188 (369)
T ss_dssp             EEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred             Eee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence            443  1222233333332               233333211                   1121 01789999999999


Q ss_pred             eEEEEEeCCCeEEEEeCCC-CCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEE
Q 018806          226 YLASASYESSSFTIWDVAQ-GLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATW  303 (350)
Q Consensus       226 ~l~~~~~d~g~i~iwd~~~-~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~  303 (350)
                      +|++++.+ |.|++||+++ +.... +..|...+.+++|+|++++|++++.|+.|++||+++++......+...+..++|
T Consensus       189 ~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  267 (369)
T 3zwl_B          189 YIIAGHKD-GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVI  267 (369)
T ss_dssp             EEEEEETT-SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             EEEEEcCC-CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEe
Confidence            99999999 7999999998 44443 445788999999999999999999999999999999988766668889999999


Q ss_pred             cCCCCEEEEEECCCe-------------EEEEEEeCCCCC--CCceeecccccceee
Q 018806          304 DPEGRMILLAFAGSL-------------TLGSIHFASKPP--SLDAHLLPVDLPDIV  345 (350)
Q Consensus       304 s~~g~~l~~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~~v~~~~~~  345 (350)
                      +|+++++++++....             .+..|+......  .+.+|..+|....+.
T Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  324 (369)
T 3zwl_B          268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS  324 (369)
T ss_dssp             CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence            999999999874432             344444433322  445677777666554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=9.5e-28  Score=228.79  Aligned_cols=222  Identities=12%  Similarity=0.167  Sum_probs=176.7

Q ss_pred             hhhhhhhhhhccccccCCCCcCCC-C-----------------------------ccCeeEEEEecCCCEEEEEECCCeE
Q 018806           74 FSTLHGIISHSIKPLLHPDHVHLL-P-----------------------------EVDLQGVSWHQHKHIVAFISGSTQV  123 (350)
Q Consensus        74 ~~~~~gh~~~~~~~~~~p~~~~~~-~-----------------------------~~~V~~v~~sp~g~~la~~s~d~~i  123 (350)
                      ...+.||.+.+....+.|....++ .                             ...|++++|+|++++|++|+.|+.|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            456788988887776665533211 1                             2258999999999999999999999


Q ss_pred             EEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEE
Q 018806          124 IVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL  203 (350)
Q Consensus       124 ~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (350)
                      +|||+..  +.....+ .+|...|.+++|+|+++.+++++.|++|++||.... ....                     +
T Consensus       455 ~vwd~~~--~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~---------------------~  509 (694)
T 3dm0_A          455 RLWDLAA--GVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYT---------------------I  509 (694)
T ss_dssp             EEEETTT--TEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEE---------------------E
T ss_pred             EEEECCC--CcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-ccee---------------------e
Confidence            9999954  5555554 489999999999999999999999999999997521 1111                     1


Q ss_pred             eeeccCCCCCceeeEEECCCC--CeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 018806          204 VDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYL  280 (350)
Q Consensus       204 ~~~~~~~~~~~v~~~~~sp~g--~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  280 (350)
                      .....+|. ..|.+++|+|++  ..|++++.| |+|++||+++++... +..|.+.|.+++|+|+|++|++++.|+.|++
T Consensus       510 ~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d-~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i  587 (694)
T 3dm0_A          510 SEGGEGHR-DWVSCVRFSPNTLQPTIVSASWD-KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL  587 (694)
T ss_dssp             CSSTTSCS-SCEEEEEECSCSSSCEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred             ccCCCCCC-CcEEEEEEeCCCCcceEEEEeCC-CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            11134554 689999999987  578999999 699999999887654 4568899999999999999999999999999


Q ss_pred             EeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          281 WETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       281 wd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      ||+++++......+...+.+++|+|++.+|+++.++.+.+|+
T Consensus       588 wd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd  629 (694)
T 3dm0_A          588 WDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWD  629 (694)
T ss_dssp             EETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEE
T ss_pred             EECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEE
Confidence            999999886555666789999999999999888776544443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=6.1e-27  Score=203.16  Aligned_cols=194  Identities=14%  Similarity=0.132  Sum_probs=166.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|.+++|+|++++|++++.|+.|++||+..  ++....+ ..|...|.+++|+|+++.+++++.|+.|++||+......
T Consensus       142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          142 PACYALAISPDSKVCFSCCSDGNIAVWDLHN--QTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCC--Cceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence            3689999999999999999999999999953  4444444 478999999999999989999889999999999843221


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  259 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~  259 (350)
                                               ..+. + ...+.+++|+|++++|++++.+ |.|++||+++++...+..|...+.+
T Consensus       219 -------------------------~~~~-~-~~~v~~~~~s~~~~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~v~~  270 (337)
T 1gxr_A          219 -------------------------QQHD-F-TSQIFSLGYCPTGEWLAVGMES-SNVEVLHVNKPDKYQLHLHESCVLS  270 (337)
T ss_dssp             -------------------------EEEE-C-SSCEEEEEECTTSSEEEEEETT-SCEEEEETTSSCEEEECCCSSCEEE
T ss_pred             -------------------------eeec-C-CCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCCeEEEcCCccceeE
Confidence                                     1122 2 3689999999999999999998 6999999999887777788899999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      ++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++++|++++ ++.+.+|.+.
T Consensus       271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9999999999999999999999999998876677889999999999999999887 5556666654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=2.1e-28  Score=216.30  Aligned_cols=200  Identities=13%  Similarity=0.129  Sum_probs=154.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+|++++|++++.|+.|++||+..............|...|.+++|+|+++.+++++.|+.|++||+.....
T Consensus        55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND  134 (377)
T ss_dssp             SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred             CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence            44699999999999999999999999999965321112333357999999999999999999999999999999984432


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccC-CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC------------
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG------------  245 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~------------  245 (350)
                      .                      .+...+.+ |. ..|.+++|+|++++|++++.| |+|++||++..            
T Consensus       135 ~----------------------~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~  190 (377)
T 3dwl_C          135 W----------------------WVSKHLKRPLR-STILSLDWHPNNVLLAAGCAD-RKAYVLSAYVRDVDAKPEASVWG  190 (377)
T ss_dssp             C----------------------CCCEEECSSCC-SCEEEEEECTTSSEEEEEESS-SCEEEEEECCSSCC-CCCSCSSC
T ss_pred             c----------------------eeeeEeecccC-CCeEEEEEcCCCCEEEEEeCC-CEEEEEEEEecccCCCccccccc
Confidence            1                      11233455 54 799999999999999999999 69999998632            


Q ss_pred             ------CceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-----eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          246 ------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       246 ------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                            +......|...|.+++|+|+|++|++++.|+.|++||+++++.     ..+..|...|.+++|+|+|++|++++
T Consensus       191 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          191 SRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             SCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred             cccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence                  2222226778899999999999999999999999999999875     45668889999999999999999887


Q ss_pred             CCCeEEEE
Q 018806          315 AGSLTLGS  322 (350)
Q Consensus       315 ~~~~~~~~  322 (350)
                      ++...+|.
T Consensus       271 ~~~~~~~~  278 (377)
T 3dwl_C          271 NYSPILLQ  278 (377)
T ss_dssp             SSSEEEEC
T ss_pred             CCcEEEEE
Confidence            66554443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.5e-27  Score=205.93  Aligned_cols=219  Identities=14%  Similarity=0.113  Sum_probs=171.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-----CcEEEEec
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAP  173 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~  173 (350)
                      ...|.+++|+|++++|++++.|+.|++||+..  ++....+.  +...|.+++|+|++..+++++.+     +.|++||+
T Consensus        74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B           74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN--GQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTT--CCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence            34799999999999999999999999999954  55555553  78899999999999999888888     99999999


Q ss_pred             CCCCCCceeecc--------------------cccccce--ecCCCCCceEEe---------eeccCCCCCceeeEEECC
Q 018806          174 SYPGNAASVRSG--------------------AASFLGA--LSRGPGTRWTLV---------DFLRSQNGEQITALSWGP  222 (350)
Q Consensus       174 ~~~~~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~sp  222 (350)
                      ........+...                    .+.+...  +..+.++.+.++         ..+..|. ..|.+++|+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~  228 (369)
T 3zwl_B          150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE-KSISDMQFSP  228 (369)
T ss_dssp             EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS-SCEEEEEECT
T ss_pred             cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC-CceeEEEECC
Confidence            855432222111                    1111111  122233333333         3445564 6899999999


Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCC--------------eEEEEeCCCCce
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG--------------TFYLWETNTWTS  288 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--------------~v~iwd~~~~~~  288 (350)
                      ++++|++++.| |.|++||+++++......+...+..++|+|+++++++++.++              .+++||..+++.
T Consensus       229 ~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          229 DLTYFITSSRD-TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             TSSEEEEEETT-SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             CCCEEEEecCC-ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            99999999999 699999999998887777889999999999999999999888              899999999887


Q ss_pred             -eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          289 -EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       289 -~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                       ..+..|...|.+++|+|+|++|++++ ++.+.+|.+
T Consensus       308 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence             45668999999999999999999887 444444444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=1.2e-27  Score=211.98  Aligned_cols=195  Identities=17%  Similarity=0.285  Sum_probs=155.8

Q ss_pred             cCeeEEEEecC-CCEEEEEECCCeEEEEEccCCCCCceeEe----cCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEec
Q 018806          100 VDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGKDACIL----TSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAP  173 (350)
Q Consensus       100 ~~V~~v~~sp~-g~~la~~s~d~~i~iw~~~~~~~~~~~~~----~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~  173 (350)
                      ..|.++.|+|+ +..|++|+.|++|++||+..  ++....+    ..+|...|.+++|++ ++..+++++.|++|++||+
T Consensus       158 ~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~  235 (380)
T 3iz6_a          158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTT--GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL  235 (380)
T ss_dssp             SCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred             cceEEEEEecCCCCEEEEECCCCcEEEEEcCC--CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence            35778888886 46799999999999999964  5544433    146889999999987 6677888888999999999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~  253 (350)
                      +.....                        ...+.+|. ..|.+++|+|++++|++++.| |+|++||++++........
T Consensus       236 ~~~~~~------------------------~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D-~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          236 RITSRA------------------------VRTYHGHE-GDINSVKFFPDGQRFGTGSDD-GTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             TTTCCC------------------------CEEECCCS-SCCCEEEECTTSSEEEEECSS-SCEEEEETTTTEEEEEECC
T ss_pred             CCCCcc------------------------eEEECCcC-CCeEEEEEecCCCeEEEEcCC-CeEEEEECCCCcEEEEecc
Confidence            743221                        23456775 799999999999999999999 6999999999876554322


Q ss_pred             --------CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-cc----ccCCCCeEEEEEcCCCCEEEEEE-CCCeE
Q 018806          254 --------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW----SSTSGFVTGATWDPEGRMILLAF-AGSLT  319 (350)
Q Consensus       254 --------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~----~~~~~~v~~~~~s~~g~~l~~~~-~~~~~  319 (350)
                              ...+.+++|+|+|++|++|+.||.|++||+.+++.. .+    ..|...|++++|+|+|++|++++ ++.+.
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  369 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK  369 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence                    124889999999999999999999999999988763 22    47899999999999999999887 44444


Q ss_pred             EEE
Q 018806          320 LGS  322 (350)
Q Consensus       320 ~~~  322 (350)
                      +|.
T Consensus       370 iW~  372 (380)
T 3iz6_a          370 IWA  372 (380)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=5.5e-27  Score=209.17  Aligned_cols=220  Identities=17%  Similarity=0.280  Sum_probs=169.9

Q ss_pred             CccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCC-----CceeEecCCCCCCeeEEEEeeCC-CeEEEEecCCcEEE
Q 018806           98 PEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEG-----KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICI  170 (350)
Q Consensus        98 ~~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i  170 (350)
                      +...|++++|+| ++++|++++.||.|+||++.....     .....+ .+|...|.+++|+|++ ..+++++.|+.|++
T Consensus        80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i  158 (402)
T 2aq5_A           80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILV  158 (402)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred             CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence            355799999999 999999999999999999965321     233344 4799999999999998 46777778999999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeec--cCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  248 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~  248 (350)
                      ||+.....                         ...+  .+|. ..|.+++|+|++++|++++.| |.|++||+++++..
T Consensus       159 wd~~~~~~-------------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          159 WDVGTGAA-------------------------VLTLGPDVHP-DTIYSVDWSRDGALICTSCRD-KRVRVIEPRKGTVV  211 (402)
T ss_dssp             EETTTTEE-------------------------EEEECTTTCC-SCEEEEEECTTSSCEEEEETT-SEEEEEETTTTEEE
T ss_pred             EECCCCCc-------------------------cEEEecCCCC-CceEEEEECCCCCEEEEEecC-CcEEEEeCCCCcee
Confidence            99984322                         3334  4554 799999999999999999999 69999999998766


Q ss_pred             eee--ecCCC-eEEEEEcCCCCEEEEE---ecCCeEEEEeCCCCce---eccccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          249 PIR--RGFGG-LSILKWSPTGDYFFAA---KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       249 ~~~--~~~~~-v~~~~~sp~g~~l~~~---~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                      ...  .|.+. +.+++|+|++++|+++   +.|+.|++||+++++.   .....+...+.+++|+|++++|++++..+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence            543  45554 8999999999999999   7899999999998765   2223567789999999999999877654555


Q ss_pred             EEEEEeCCCCC---CCcee--ecccccceee
Q 018806          320 LGSIHFASKPP---SLDAH--LLPVDLPDIV  345 (350)
Q Consensus       320 ~~~~~~~~~~~---~~~~~--~~~v~~~~~~  345 (350)
                      +..|++....+   .+..|  ..++....+.
T Consensus       292 i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s  322 (402)
T 2aq5_A          292 IRYFEITSEAPFLHYLSMFSSKESQRGMGYM  322 (402)
T ss_dssp             EEEEEECSSTTCEEEEEEECCSSCCSEEEEC
T ss_pred             EEEEEecCCCcceEeecccccCCcccceEEe
Confidence            66666654432   33333  3556555443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=4.1e-27  Score=202.68  Aligned_cols=216  Identities=20%  Similarity=0.303  Sum_probs=167.1

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|.+++|+|++++|++++.|+.|++||+..  ++....+ .+|...|.+++|+|+++.+++++.|+.|++||+.....
T Consensus        65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--GKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCceEEEEEcCCCCEEEEECCCCEEEEEECCC--CcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence            34699999999999999999999999999954  5555554 47999999999999999999999999999999984332


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee--ecCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--~~~~~  256 (350)
                                               ...+..|. ..|.+++|+|++++|++++.| |.|++||+++++.....  .+...
T Consensus       142 -------------------------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~~  194 (312)
T 4ery_A          142 -------------------------LKTLPAHS-DPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCLKTLIDDDNPP  194 (312)
T ss_dssp             -------------------------EEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCSSCCC
T ss_pred             -------------------------EEEecCCC-CcEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeeEEeccCCCc
Confidence                                     33455665 689999999999999999999 69999999988765433  34567


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCe--EEEEE-cCCCCEEEEEECCCeEEEEEEeCCCCC--
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFV--TGATW-DPEGRMILLAFAGSLTLGSIHFASKPP--  330 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v--~~~~~-s~~g~~l~~~~~~~~~~~~~~~~~~~~--  330 (350)
                      +..++|+|++++|++++.|+.|++||+++++.. .+..|....  ....| .+++++|++++. +..+..|++.....  
T Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT-TSCEEEEETTTCCEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC-CCEEEEEECCCchhhh
Confidence            999999999999999999999999999998874 344554432  22334 467888887662 23455566554432  


Q ss_pred             CCceeecccccceee
Q 018806          331 SLDAHLLPVDLPDIV  345 (350)
Q Consensus       331 ~~~~~~~~v~~~~~~  345 (350)
                      .+.+|..+|....++
T Consensus       274 ~~~~h~~~v~~~~~~  288 (312)
T 4ery_A          274 KLQGHTDVVISTACH  288 (312)
T ss_dssp             EECCCSSCEEEEEEC
T ss_pred             hhhccCCcEEEEeec
Confidence            566777776655444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=7.4e-27  Score=210.88  Aligned_cols=235  Identities=11%  Similarity=0.162  Sum_probs=163.6

Q ss_pred             CCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCC-------C--ceeEecCCCC------------CCeeEEEEee
Q 018806           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG-------K--DACILTSDSQ------------RDVKVLEWRP  154 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~-------~--~~~~~~~~~~------------~~v~~~~~sp  154 (350)
                      +.....|++++|+|+|++||+|+.||.|+||++.....       .  ....+ .+|.            ..|.+++|+|
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC
Confidence            34456899999999999999999999999999964221       0  12333 4787            8899999999


Q ss_pred             CC--CeEEEEecCCcEEEEecCCCCCCceeec-----ccc---cccceecCCC--CCce----EEeee-ccCCCCCceee
Q 018806          155 NG--GRSLSVGCKGGICIWAPSYPGNAASVRS-----GAA---SFLGALSRGP--GTRW----TLVDF-LRSQNGEQITA  217 (350)
Q Consensus       155 ~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~---~~~~~~~~~~--~~~~----~~~~~-~~~~~~~~v~~  217 (350)
                      ++  ..+++++.|+.|++||+...........     +..   .....+....  ...+    ..... ..+|. ..|.+
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~  182 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT-YHINS  182 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-SCCCE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-cceEE
Confidence            97  6888898899999999974221100000     000   0000000000  0000    01112 35665 79999


Q ss_pred             EEECCCCCeEEEEEeCCCeEEEEeCCCC-Ccee--------eeecCCCeEEEEEcCCC-CEEEEEecCCeEEEEeCCCCc
Q 018806          218 LSWGPDGRYLASASYESSSFTIWDVAQG-LGTP--------IRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~d~g~i~iwd~~~~-~~~~--------~~~~~~~v~~~~~sp~g-~~l~~~~~d~~v~iwd~~~~~  287 (350)
                      ++|+|++++|+++ .| |.|++||++.. +...        +..|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus       183 ~~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          183 ISINSDYETYLSA-DD-LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEECTTSSEEEEE-CS-SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEcCCCCEEEEe-CC-CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            9999999999998 67 79999999843 3332        33577889999999998 999999999999999999987


Q ss_pred             e-----eccccCCC------------CeEEEEEcCCCCEEEEEECCCeEEEEEEeCC-C--CCCCceee
Q 018806          288 S-----EPWSSTSG------------FVTGATWDPEGRMILLAFAGSLTLGSIHFAS-K--PPSLDAHL  336 (350)
Q Consensus       288 ~-----~~~~~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~  336 (350)
                      .     ..+..|..            .|.+++|+|+|++|++++.  ..+..|++.. .  ...+.+|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCG
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeeccc
Confidence            5     34455554            8999999999999998877  4556666543 2  22555564

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.4e-27  Score=225.79  Aligned_cols=219  Identities=15%  Similarity=0.239  Sum_probs=173.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      .|++++|+|++++|++|+.||.|+||++...++.....+ .+|.+.|++++|+|+  ++.+++++.||.|++||+..+  
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~--   87 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG--   87 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT--
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC--
Confidence            499999999999999999999999999974344444444 589999999999988  889999999999999998832  


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEEEeCCCeEEEEeCCCCCc---eeeeec
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRG  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~d~g~i~iwd~~~~~~---~~~~~~  253 (350)
                                           .+.....+.+|. ..|.+++|+|+  ++.+++++.| |.|++||++++..   .....|
T Consensus        88 ---------------------~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~d-g~I~vwdl~~~~~~~~~~~~~~  144 (753)
T 3jro_A           88 ---------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD-GKVSVVEFKENGTTSPIIIDAH  144 (753)
T ss_dssp             ---------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEECCSSSCCCCEEEECC
T ss_pred             ---------------------cccccccccCCC-CCeEEEEECCCCCCCEEEEEeCC-CcEEEEEeecCCCcceeEeecC
Confidence                                 122344466665 79999999999  9999999999 7999999998732   345567


Q ss_pred             CCCeEEEEEcC-------------CCCEEEEEecCCeEEEEeCCCCce-----eccccCCCCeEEEEEcCC---CCEEEE
Q 018806          254 FGGLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMILL  312 (350)
Q Consensus       254 ~~~v~~~~~sp-------------~g~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~s~~---g~~l~~  312 (350)
                      ...+.+++|+|             ++++|++++.||.|++||++++..     ..+..|...|++++|+|+   +++|++
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s  224 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  224 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence            88999999999             589999999999999999988743     345688999999999999   899988


Q ss_pred             EE-CCCeEEEEEEeCCCC-----CCCceeecccccceee
Q 018806          313 AF-AGSLTLGSIHFASKP-----PSLDAHLLPVDLPDIV  345 (350)
Q Consensus       313 ~~-~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~  345 (350)
                      ++ ++.+.+|.++.....     .....|..+|....+.
T Consensus       225 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  263 (753)
T 3jro_A          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS  263 (753)
T ss_dssp             EESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC
T ss_pred             EecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc
Confidence            87 555555555443211     1333566666655554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=1.3e-26  Score=220.89  Aligned_cols=200  Identities=15%  Similarity=0.227  Sum_probs=162.9

Q ss_pred             CCccCeeEEEEecCC-CEEEEEECCCeEEEEEccCCCCC--ceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEec
Q 018806           97 LPEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  173 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g-~~la~~s~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~  173 (350)
                      .|...|++++|+|++ ++|++|+.|++|++|++......  .......+|...|.+++|+|+++.+++++.|++|+|||+
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            356689999999875 79999999999999999643221  112233589999999999999999999999999999999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee--
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--  251 (350)
                      ....                         ....+.+|. ..|.+++|+|++++|++++.| |+|++||........+.  
T Consensus       460 ~~~~-------------------------~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D-~~i~iwd~~~~~~~~~~~~  512 (694)
T 3dm0_A          460 AAGV-------------------------STRRFVGHT-KDVLSVAFSLDNRQIVSASRD-RTIKLWNTLGECKYTISEG  512 (694)
T ss_dssp             TTTE-------------------------EEEEEECCS-SCEEEEEECTTSSCEEEEETT-SCEEEECTTSCEEEEECSS
T ss_pred             CCCc-------------------------ceeEEeCCC-CCEEEEEEeCCCCEEEEEeCC-CEEEEEECCCCcceeeccC
Confidence            7432                         234567776 799999999999999999999 69999998765433332  


Q ss_pred             --ecCCCeEEEEEcCCC--CEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          252 --RGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       252 --~~~~~v~~~~~sp~g--~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                        .|...|.+++|+|++  ..|++++.|++|++||+++++. ..+..|...|++++|+|+|++|++++ ++.+.+|++
T Consensus       513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~  590 (694)
T 3dm0_A          513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL  590 (694)
T ss_dssp             TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred             CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence              466789999999987  5799999999999999999887 45678999999999999999999887 444555443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-26  Score=206.75  Aligned_cols=228  Identities=15%  Similarity=0.272  Sum_probs=168.8

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCC-CCceeEecCCCCCCeeEEEEeeC-CCeEEEEecCCcEEEEecCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-GKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~  175 (350)
                      +...|++++|+|++++|++++.|+.|++|++.... +........+|...|.+++|+|+ +..+++++.|+.|++||+..
T Consensus        66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~  145 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK  145 (416)
T ss_dssp             CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred             cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence            35679999999999999999999999999996421 12233344579999999999998 77788888899999999986


Q ss_pred             CC------CCcee--ecccccccceecCC-----------CCCceEEee--------eccCCC-----CCceeeEEECCC
Q 018806          176 PG------NAASV--RSGAASFLGALSRG-----------PGTRWTLVD--------FLRSQN-----GEQITALSWGPD  223 (350)
Q Consensus       176 ~~------~~~~~--~~~~~~~~~~~~~~-----------~~~~~~~~~--------~~~~~~-----~~~v~~~~~sp~  223 (350)
                      ..      ....+  .......+..+.+.           .++.+.+++        .+..+.     ...+.+++|+|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence            54      22221  11122223333333           334444443        233331     368999999999


Q ss_pred             C-CeEEEEEeCCC---eEEEEeCCCC-Ccee-ee-ecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCCce-eccccC
Q 018806          224 G-RYLASASYESS---SFTIWDVAQG-LGTP-IR-RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSST  294 (350)
Q Consensus       224 g-~~l~~~~~d~g---~i~iwd~~~~-~~~~-~~-~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~  294 (350)
                      + .++++++.+ |   .|++||++++ .... +. .|...+.+++|+| ++++|++++.|+.|++||+++++. ..+..|
T Consensus       226 ~~~~l~~~~~d-~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~  304 (416)
T 2pm9_A          226 NSTRVATATGS-DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR  304 (416)
T ss_dssp             CTTEEEEEECC-SSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred             CCCEEEEEECC-CCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence            7 577888777 7   9999999986 3333 44 5889999999999 999999999999999999999887 456688


Q ss_pred             CCCeEEEEEcCCC-CEEEEEECCCeEEEEEEeCC
Q 018806          295 SGFVTGATWDPEG-RMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       295 ~~~v~~~~~s~~g-~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ...|.+++|+|++ ++|++++ .+..+..|++..
T Consensus       305 ~~~v~~~~~s~~~~~~l~s~~-~d~~i~iw~~~~  337 (416)
T 2pm9_A          305 GNWCFKTKFAPEAPDLFACAS-FDNKIEVQTLQN  337 (416)
T ss_dssp             SSCCCCEEECTTCTTEEEECC-SSSEEEEEESCC
T ss_pred             CCceEEEEECCCCCCEEEEEe-cCCcEEEEEccC
Confidence            9999999999999 6777665 334555565544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=9e-27  Score=204.48  Aligned_cols=188  Identities=13%  Similarity=0.288  Sum_probs=143.9

Q ss_pred             cCeeEEEEecC---CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806          100 VDLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~---g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ..|++++|+|+   |++|++++.||.|+||++... +........+|...|.+++|+|+++.+++++.|+.|++||+...
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  118 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN  118 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence            45999999999   699999999999999999642 33332344579999999999999989999999999999999843


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE--CCCCCeEEEEEeCCCeEEEEeCCCCCce------
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASASYESSSFTIWDVAQGLGT------  248 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~d~g~i~iwd~~~~~~~------  248 (350)
                      ....                          +..|. ..|.+++|  +|++++|++++.| |.|++||+++++..      
T Consensus       119 ~~~~--------------------------~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~  170 (368)
T 3mmy_A          119 QAIQ--------------------------IAQHD-APVKTIHWIKAPNYSCVMTGSWD-KTLKFWDTRSSNPMMVLQLP  170 (368)
T ss_dssp             EEEE--------------------------EEECS-SCEEEEEEEECSSCEEEEEEETT-SEEEEECSSCSSCSEEEECS
T ss_pred             Ccee--------------------------ecccc-CceEEEEEEeCCCCCEEEEccCC-CcEEEEECCCCcEEEEEecC
Confidence            3211                          22232 46666666  6666666666666 46666666544211      


Q ss_pred             --------------------------------------------------------------------------------
Q 018806          249 --------------------------------------------------------------------------------  248 (350)
Q Consensus       249 --------------------------------------------------------------------------------  248 (350)
                                                                                                      
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence                                                                                            


Q ss_pred             -----eeeecCC------------CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEE
Q 018806          249 -----PIRRGFG------------GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       249 -----~~~~~~~------------~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l  310 (350)
                           .+..|..            .|.+++|+|++++|++++.||.|++||+++++. ..+..|...|.+++|+|+|++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  330 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF  330 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCE
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeE
Confidence                 1111222            599999999999999999999999999999887 4566889999999999999999


Q ss_pred             EEEECC
Q 018806          311 LLAFAG  316 (350)
Q Consensus       311 ~~~~~~  316 (350)
                      +++++.
T Consensus       331 ~~~s~d  336 (368)
T 3mmy_A          331 AYASSY  336 (368)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999744

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=2e-27  Score=211.40  Aligned_cols=217  Identities=13%  Similarity=0.079  Sum_probs=140.4

Q ss_pred             ccCeeEEEEec--------CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEE
Q 018806           99 EVDLQGVSWHQ--------HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGIC  169 (350)
Q Consensus        99 ~~~V~~v~~sp--------~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~  169 (350)
                      ...|++++|+|        |+++||+++.|++|+|||+..  +...... ..|...|.+++|+|++. .+++++.|++|+
T Consensus       136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~--~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~  212 (393)
T 4gq1_A          136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD--EGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIR  212 (393)
T ss_dssp             SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET--TEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC--Cceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence            34599999998        899999999999999999963  4443444 36888999999999875 566677789999


Q ss_pred             EEecCCCCCCceeeccccccc-ceecCCCCCceEEeeeccCCCCCceeeEEEC-CCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          170 IWAPSYPGNAASVRSGAASFL-GALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      +||+..+.............. ..+..... .........+|. ..+.++.|+ |+++.|++++.| +++++||+..++.
T Consensus       213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~-~~v~~v~~~~~dg~~l~s~s~d-~~i~vwd~~~~~~  289 (393)
T 4gq1_A          213 IFDWTLNLSAEENSQTELVKNPWLLTLNTL-PLVNTCHSSGIA-SSLANVRWIGSDGSGILAMCKS-GAWLRWNLFANND  289 (393)
T ss_dssp             EEETTCCC----------CSCCCSEEEESG-GGC------CCS-SSCSEEEEETTTTCEEEEECTT-SEEEEEEC-----
T ss_pred             EEECCCCcccccccccCCcccceEEecccc-cceeeeeccccc-ccceeeeeecCCCCEEEEEeCC-CCEEEEECccCCC
Confidence            999986544332221100000 00000000 000111234554 688999986 799999999999 6999999987643


Q ss_pred             ee-eeecCC------------------CeEEEEEcC--CCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcC
Q 018806          248 TP-IRRGFG------------------GLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP  305 (350)
Q Consensus       248 ~~-~~~~~~------------------~v~~~~~sp--~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~  305 (350)
                      .. +..+..                  ......|+|  ++.++++|+.||.|++||+.+++. .....|..+|.+++|+|
T Consensus       290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp  369 (393)
T 4gq1_A          290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ  369 (393)
T ss_dssp             --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT
T ss_pred             CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC
Confidence            22 111221                  122233444  344667888999999999999877 44567888999999999


Q ss_pred             CCCEEEEEECCCeEEE
Q 018806          306 EGRMILLAFAGSLTLG  321 (350)
Q Consensus       306 ~g~~l~~~~~~~~~~~  321 (350)
                      ||++||+++++...++
T Consensus       370 dG~~LA~as~~Gv~lv  385 (393)
T 4gq1_A          370 DGSHLAIATEGSVLLT  385 (393)
T ss_dssp             TSSEEEEEESSEEEEE
T ss_pred             CCCEEEEEeCCCeEEE
Confidence            9999999987654433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=9.5e-26  Score=194.19  Aligned_cols=220  Identities=19%  Similarity=0.300  Sum_probs=155.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec-CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .+++|+||+++ +||+| .|++|+|||+.+  ++....+. .+|...|++++|+|+++.+++++.|++|++||+..++..
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~t--g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCC--CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            46789999886 77765 599999999964  55544442 368889999999999999999999999999999865443


Q ss_pred             ceeecccccccce--------ecCCCCCceE---------EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC
Q 018806          180 ASVRSGAASFLGA--------LSRGPGTRWT---------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       180 ~~~~~~~~~~~~~--------~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~  242 (350)
                      ..+... ......        .+.+.++...         ....+.+|. ..+..+.+++++++|++++.| |+|++||+
T Consensus       103 ~~~~~h-~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~  179 (318)
T 4ggc_A          103 RNMTSH-SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS-QEVCGLRWAPDGRHLASGGND-NLVNVWPS  179 (318)
T ss_dssp             EEEECC-SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEES
T ss_pred             EEecCc-cceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc-CceEEEEEcCCCCEEEEEecC-cceeEEEC
Confidence            333221 111111        1111222211         233455665 678888888888888888888 68888888


Q ss_pred             CCCCc-------------------------------------------------eeeeecCCCeEEEEEcCCCCEEEEEe
Q 018806          243 AQGLG-------------------------------------------------TPIRRGFGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       243 ~~~~~-------------------------------------------------~~~~~~~~~v~~~~~sp~g~~l~~~~  273 (350)
                      ++++.                                                 .....+...+..+.|+|+++.+++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEE
Confidence            75421                                                 11112334567788888888877654


Q ss_pred             --cCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          274 --FDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       274 --~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                        .|+.|++||+++++. ..+.+|.+.|++++|+|+|++|++++.+ ..+..|++.+.
T Consensus       260 g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D-~~v~iWd~~~~  316 (318)
T 4ggc_A          260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD-ETLRLWRCFEL  316 (318)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT-TEEEEECCSCC
T ss_pred             EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC-CeEEEEECCCC
Confidence              789999999999887 4577899999999999999999988733 35556665543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-26  Score=207.94  Aligned_cols=219  Identities=13%  Similarity=0.198  Sum_probs=169.8

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+|++++|++++.|+.|++|+..   +.....+ ..|...|.+++|+|+++.+++++.|+.|++||+.....
T Consensus       108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKT---GALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             CBCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence            4579999999999999999999999999942   5555555 57999999999999999999999999999999985443


Q ss_pred             Cceeeccc----------------------ccccce-ecCCCCCceEEee--------eccCCCCCceeeEEECCCCCeE
Q 018806          179 AASVRSGA----------------------ASFLGA-LSRGPGTRWTLVD--------FLRSQNGEQITALSWGPDGRYL  227 (350)
Q Consensus       179 ~~~~~~~~----------------------~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l  227 (350)
                      ...+....                      +.+... +..+.++.+.+++        .+..|. ..|.+++|+|++++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTNKLL  262 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCS-SCEEEEEEETTTTEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCC-CceEEEEECCCCCEE
Confidence            33222111                      111111 1122233333333        344564 689999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcC
Q 018806          228 ASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP  305 (350)
Q Consensus       228 ~~~~~d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~  305 (350)
                      ++++.+ |.|++||+++++.... ..|...+.+++|+|++ ++++++.|+.|++||+++++.. .+..|...+.+++|+|
T Consensus       263 ~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          263 LSASDD-GTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             EEEETT-SCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred             EEEcCC-CEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence            999999 6999999998876554 4578899999999999 9999999999999999998874 4557888999999999


Q ss_pred             CCCEEEEEE-CCCeEEEEEE
Q 018806          306 EGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       306 ~g~~l~~~~-~~~~~~~~~~  324 (350)
                      ++++|++++ ++.+.+|.++
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECH
T ss_pred             CCCEEEEEECCCeEEEEECC
Confidence            999999988 4445555554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.8e-27  Score=215.88  Aligned_cols=189  Identities=11%  Similarity=0.106  Sum_probs=152.5

Q ss_pred             ccCeeEEEEecC------CCEEEEEECCCeEEEEEccCCCCC--------ceeEecCCCCCCeeEEEEeeCCCeEEEEec
Q 018806           99 EVDLQGVSWHQH------KHIVAFISGSTQVIVRDYEDSEGK--------DACILTSDSQRDVKVLEWRPNGGRSLSVGC  164 (350)
Q Consensus        99 ~~~V~~v~~sp~------g~~la~~s~d~~i~iw~~~~~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  164 (350)
                      ...|.+++|+|+      +.+||+++.||+|+|||+......        .......+|...|++++|+++ ..|++++.
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~  285 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFK  285 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEET
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeC
Confidence            356999999997      579999999999999999643211        011123478899999999987 68888888


Q ss_pred             CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeE--EECCCC-CeEEEEEeCCCeEEEEe
Q 018806          165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDG-RYLASASYESSSFTIWD  241 (350)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g-~~l~~~~~d~g~i~iwd  241 (350)
                      ||+|++||+.....+                        ...+.+|. ..|.++  +|+|+| ++|++++.| |+|++||
T Consensus       286 DgtV~lWD~~~~~~~------------------------~~~~~~H~-~~V~sv~~~~s~~g~~~laS~S~D-~tvklWD  339 (524)
T 2j04_B          286 NGFVAEFDLTDPEVP------------------------SFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVD-GYFYIFN  339 (524)
T ss_dssp             TSEEEEEETTBCSSC------------------------SEEEECSS-SCEEEEEEECCTTSCCEEEEEETT-SEEEEEC
T ss_pred             CCEEEEEECCCCCCc------------------------eEEeeccc-ccEEEEEEEcCCCCCeEEEEeccC-CeEEEEE
Confidence            999999999843221                        12245665 799999  678888 889999999 6999999


Q ss_pred             CCCCCcee-eeecC--CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          242 VAQGLGTP-IRRGF--GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       242 ~~~~~~~~-~~~~~--~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +++++... +..|.  ..+.+++|+|+++.+++++.|++|++||++++.. ..+.+|...|++++|+|+|++|++|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred             CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence            99876543 33443  3588999999999999999999999999999886 55778999999999999999999887

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-26  Score=208.46  Aligned_cols=215  Identities=12%  Similarity=0.076  Sum_probs=164.6

Q ss_pred             hhhhhhhhccccccCCCCcC------------C---CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec
Q 018806           76 TLHGIISHSIKPLLHPDHVH------------L---LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT  140 (350)
Q Consensus        76 ~~~gh~~~~~~~~~~p~~~~------------~---~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~  140 (350)
                      .+.||...++...+.|....            +   .+...|.+++|||+|++||+++.||.++||+..   + ....+ 
T Consensus        47 ~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~---~-~l~~l-  121 (588)
T 2j04_A           47 DINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN---K-MLTNL-  121 (588)
T ss_dssp             CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT---E-EEEEC-
T ss_pred             eecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC---c-eeeec-
Confidence            34799999998887775311            1   113469999999999999999999999999953   2 33333 


Q ss_pred             CCCCC-----CeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeec----cCCC
Q 018806          141 SDSQR-----DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL----RSQN  211 (350)
Q Consensus       141 ~~~~~-----~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  211 (350)
                      . |..     .|.+++|||||+.+++++.||+|+|||+..+.....                  ++....++    .+|.
T Consensus       122 ~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~------------------~~i~l~ti~~~~~gh~  182 (588)
T 2j04_A          122 D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP------------------EFYFESSIRLSDAGSK  182 (588)
T ss_dssp             C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC------------------CCEEEEEEECSCTTCC
T ss_pred             c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc------------------cceeeeeeeccccccc
Confidence            3 444     599999999999999999999999999984321000                  01122333    5554


Q ss_pred             CCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce----eee-ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 018806          212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  286 (350)
Q Consensus       212 ~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~----~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~  286 (350)
                       ..|.+++|+|+|  +++++.| ++|++||+.++...    .+. .|...|.+++|+  |+.||+++ +++|++||+.++
T Consensus       183 -~~V~sVawSPdg--Laass~D-~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          183 -DWVTHIVWYEDV--LVAALSN-NSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             -CCEEEEEEETTE--EEEEETT-CCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred             -ccEEEEEEcCCc--EEEEeCC-CeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence             799999999999  8888888 59999999987743    232 466889999999  68898887 699999999998


Q ss_pred             ceeccc-cCCCCeEEEEE--cCCCCEEEEEE-CCCeEEEE
Q 018806          287 TSEPWS-STSGFVTGATW--DPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       287 ~~~~~~-~~~~~v~~~~~--s~~g~~l~~~~-~~~~~~~~  322 (350)
                      +...+. +|...+.+++|  +||++.|+++. ++. .+|.
T Consensus       256 ~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          256 SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            884444 89999999999  99999998876 333 4444

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=8.1e-27  Score=208.99  Aligned_cols=195  Identities=15%  Similarity=0.162  Sum_probs=155.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      +....|+|++++||+++.|+.|++||+..  +.. .....+|...|.+++|+|+++.+++++.|+.|++||+......  
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--  174 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQ-REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--  174 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTS--CEE-EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC--
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCC--cce-eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc--
Confidence            44457899999999999999999999853  443 3344589999999999999988999999999999999854432  


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee----cCC--
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFG--  255 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~----~~~--  255 (350)
                                             ..+.+|. ..|.+++|+|++++|++++.| |+|++||+++++......    +..  
T Consensus       175 -----------------------~~~~~h~-~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          175 -----------------------RTLIGHR-ATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             -----------------------EEEECCS-SCEEEEEEETTTTEEEEEETT-SCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             -----------------------eEEcCCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEeECCCCceeEEeecCCCCCCCc
Confidence                                   2355665 799999999999999999999 699999999887655432    223  


Q ss_pred             -------------------CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-c-ccCCCCeEEEEEcCCCC-EEEEE
Q 018806          256 -------------------GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W-SSTSGFVTGATWDPEGR-MILLA  313 (350)
Q Consensus       256 -------------------~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~-~~~~~~v~~~~~s~~g~-~l~~~  313 (350)
                                         .+.+++|+|+|++|++++.||.|++||+++++... + ..|...|.+++|+|+++ +|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                               34445568899999999999999999999988633 2 35788999999999999 88877


Q ss_pred             ECCCeEEEEEEeCC
Q 018806          314 FAGSLTLGSIHFAS  327 (350)
Q Consensus       314 ~~~~~~~~~~~~~~  327 (350)
                      +.+ ..+..|++..
T Consensus       310 ~~d-g~i~vwd~~~  322 (420)
T 3vl1_A          310 YEN-GMLAQWDLRS  322 (420)
T ss_dssp             ETT-SEEEEEETTC
T ss_pred             eCC-CeEEEEEcCC
Confidence            633 3566666654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=1.1e-25  Score=200.49  Aligned_cols=228  Identities=16%  Similarity=0.227  Sum_probs=165.1

Q ss_pred             CccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEec----------CCCCCCeeEEEEee-CCCeEEEEecC
Q 018806           98 PEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILT----------SDSQRDVKVLEWRP-NGGRSLSVGCK  165 (350)
Q Consensus        98 ~~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~----------~~~~~~v~~~~~sp-~~~~l~~~~~d  165 (350)
                      +...|++++|+| ++++||+++.||.|++|++............          .+|...|.+++|+| ++..+++++.|
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  121 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD  121 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred             cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence            456799999999 9999999999999999999753332222110          24889999999999 65677788889


Q ss_pred             CcEEEEecCCCCCCceeeccc------cccc-----ceecCCCCCceEEee--------eccCCCCCceeeEEECCCCCe
Q 018806          166 GGICIWAPSYPGNAASVRSGA------ASFL-----GALSRGPGTRWTLVD--------FLRSQNGEQITALSWGPDGRY  226 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~  226 (350)
                      +.|++||+........+....      ..+.     .-+..+.++.+.+++        .+.+|. ..|.+++|+|++++
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~  200 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR-QEILAVSWSPRYDY  200 (408)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC-SCEEEEEECSSCTT
T ss_pred             CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC-CcEEEEEECCCCCc
Confidence            999999998554333332111      1110     112222334444443        445565 78999999999995


Q ss_pred             -EEEEEeCCCeEEEEeCCCCCce-e-e---------------eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          227 -LASASYESSSFTIWDVAQGLGT-P-I---------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       227 -l~~~~~d~g~i~iwd~~~~~~~-~-~---------------~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                       |++++.| |.|++||++.+... . +               ..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus       201 ll~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          201 ILATASAD-SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             EEEEEETT-SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             EEEEEcCC-CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence             7788888 79999999876421 1 1               35678899999999999999999999999999987653


Q ss_pred             e------------------------------------------------ccccCCCCeEEEEEcCCCCEEEEEE-CCCeE
Q 018806          289 E------------------------------------------------PWSSTSGFVTGATWDPEGRMILLAF-AGSLT  319 (350)
Q Consensus       289 ~------------------------------------------------~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~  319 (350)
                      .                                                .+..|...|++++|+|++++|++++ ++.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  359 (408)
T 4a11_B          280 TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL  359 (408)
T ss_dssp             CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence            1                                                1235788999999999999999887 55555


Q ss_pred             EEEEEeCC
Q 018806          320 LGSIHFAS  327 (350)
Q Consensus       320 ~~~~~~~~  327 (350)
                      +|.+....
T Consensus       360 iw~~~~~~  367 (408)
T 4a11_B          360 AWVPSLYE  367 (408)
T ss_dssp             EEEECC--
T ss_pred             EEeCCCCC
Confidence            55554443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-26  Score=200.78  Aligned_cols=201  Identities=18%  Similarity=0.316  Sum_probs=161.9

Q ss_pred             ccCeeEEEEecC--CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecC
Q 018806           99 EVDLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus        99 ~~~V~~v~~sp~--g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~  174 (350)
                      ...|++++|+++  +++|++++.|+.|++||+........... ..|...|.+++|+|+  +..+++++.|+.|++||+.
T Consensus        55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            346999999987  99999999999999999964221133333 478999999999999  8899999999999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-------------CCCeEEEEEeCCCeEEEEe
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-------------DGRYLASASYESSSFTIWD  241 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------------~g~~l~~~~~d~g~i~iwd  241 (350)
                      .......                       ..+..|. ..|.+++|+|             +++.|++++.| |.|++||
T Consensus       134 ~~~~~~~-----------------------~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d  188 (379)
T 3jrp_A          134 ENGTTSP-----------------------IIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-NLVKIWK  188 (379)
T ss_dssp             TTSCCCE-----------------------EEEECCT-TCEEEEEECCCC----------CTTCEEEEEETT-SCEEEEE
T ss_pred             CCCceee-----------------------EEecCCC-CceEEEEEcCccccccccccCCCCCCEEEEEeCC-CeEEEEE
Confidence            5432211                       1234554 6899999999             69999999999 6999999


Q ss_pred             CCCCCce-----eeeecCCCeEEEEEcCC---CCEEEEEecCCeEEEEeCCCCce------eccccCCCCeEEEEEcCCC
Q 018806          242 VAQGLGT-----PIRRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       242 ~~~~~~~-----~~~~~~~~v~~~~~sp~---g~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~v~~~~~s~~g  307 (350)
                      ++++...     .+..|...|.+++|+|+   +++|++++.||.|++||+++++.      .....+...|++++|+|+|
T Consensus       189 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  268 (379)
T 3jrp_A          189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  268 (379)
T ss_dssp             EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS
T ss_pred             ecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC
Confidence            9876532     23457889999999999   89999999999999999998742      2233478899999999999


Q ss_pred             CEEEEEE-CCCeEEEEEEe
Q 018806          308 RMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       308 ~~l~~~~-~~~~~~~~~~~  325 (350)
                      ++|++++ ++.+.+|.+..
T Consensus       269 ~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          269 NVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCEEEEESSSSEEEEEEEE
T ss_pred             CEEEEecCCCcEEEEeCCC
Confidence            9999887 66677777763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=7.1e-26  Score=203.17  Aligned_cols=223  Identities=17%  Similarity=0.227  Sum_probs=168.0

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++|+|+|+|++||+|+.||.|+|||+..  ++.+... .+|...+.+++|+  +..+++++.|+.+++||......
T Consensus       147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce
Confidence            34699999999999999999999999999954  5555555 5899999988875  45777888899999999885444


Q ss_pred             Cceeecccccccce----------ecCCCCCceEEee------------eccCCCCCceeeEEECCCCCeE-EEE--EeC
Q 018806          179 AASVRSGAASFLGA----------LSRGPGTRWTLVD------------FLRSQNGEQITALSWGPDGRYL-ASA--SYE  233 (350)
Q Consensus       179 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~sp~g~~l-~~~--~~d  233 (350)
                      ......+.......          ++.+.++.+.++.            ....|. ..|.+++|+|++..+ +++  +.|
T Consensus       222 ~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS-SCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC-CceeeeeeCCCcccEEEEEeecCC
Confidence            33322222222222          2223344444443            233443 689999999976654 443  356


Q ss_pred             CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe--cCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEE
Q 018806          234 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK--FDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       234 ~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~--~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l  310 (350)
                       |+|++||+.+++......+...+.++.|+|+++.+++++  .|+.|+|||+.+++. ..+.+|...|++++|+|||++|
T Consensus       301 -~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l  379 (420)
T 4gga_A          301 -RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV  379 (420)
T ss_dssp             -CEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             -CEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence             799999999998888777888999999999999988765  689999999999887 4677899999999999999999


Q ss_pred             EEEECCCeEEEEEEeCCCC
Q 018806          311 LLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~  329 (350)
                      ++++.+ ..+..|+++...
T Consensus       380 ~S~s~D-~tvriWdv~~~~  397 (420)
T 4gga_A          380 ASAAAD-ETLRLWRCFELD  397 (420)
T ss_dssp             EEEETT-TEEEEECCSCSS
T ss_pred             EEEecC-CeEEEEECCCCC
Confidence            988743 356666666543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=4.7e-26  Score=199.26  Aligned_cols=223  Identities=13%  Similarity=0.179  Sum_probs=164.0

Q ss_pred             cCeeEEEEecCCCEEE-EEEC---CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC---CCeEEEEecCCcEEEEe
Q 018806          100 VDLQGVSWHQHKHIVA-FISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWA  172 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la-~~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~iwd  172 (350)
                      ..|.+++|+|++..++ +++.   |+.|+||++..  ++.......+|...|.+++|+|+   +..+++++.|+.|++||
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH--GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS--SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC--CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            3599999999996555 5554   89999999964  44433433468899999999998   58888888899999999


Q ss_pred             cCCCCCCceeeccccccccee----------------cCCCCCceEEeee---------cc---CCCCCceeeEE----E
Q 018806          173 PSYPGNAASVRSGAASFLGAL----------------SRGPGTRWTLVDF---------LR---SQNGEQITALS----W  220 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------~~---~~~~~~v~~~~----~  220 (350)
                      +................+..+                ..+.++.+.+++.         +.   ++....+.+++    |
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            986652222222222222222                2223344444432         22   22223788888    7


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcC---CCCEEEEEecCCeEEEEeCCCCcee-cc-----
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTSE-PW-----  291 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~d~~v~iwd~~~~~~~-~~-----  291 (350)
                      +|++++|++++.+ |.|++||+++++......+...+.+++|+|   ++++|++++.|+.|++||+++++.. .+     
T Consensus       177 ~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  255 (357)
T 3i2n_A          177 NQEERVVCAGYDN-GDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE  255 (357)
T ss_dssp             C-CCCEEEEEETT-SEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE
T ss_pred             CCCCCEEEEEccC-CeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc
Confidence            8999999999999 699999999998877778889999999999   9999999999999999999887653 22     


Q ss_pred             ccCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEEEe
Q 018806          292 SSTSGFVTGATWDPEGR-MILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       292 ~~~~~~v~~~~~s~~g~-~l~~~~-~~~~~~~~~~~  325 (350)
                      ..|...|++++|+|+++ +|++++ ++.+.+|.++.
T Consensus       256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            27899999999999999 677666 44455555554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.5e-25  Score=199.88  Aligned_cols=222  Identities=17%  Similarity=0.229  Sum_probs=169.4

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+|++++|++++.||.|++||+..  ++....+ .+|...|.+++|+  +..+++++.|+.|++||+.....
T Consensus       134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~  208 (401)
T 4aez_A          134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVES--QTKLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH  208 (401)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred             CCCEEEEEECCCCCEEEEECCCCeEEEEECcC--CeEEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc
Confidence            45799999999999999999999999999954  5555555 4899999999994  46888888899999999985443


Q ss_pred             CceeecccccccceecCC----------CCCceEEee--------eccCCCCCceeeEEECCCCCeEEEEE---eCCCeE
Q 018806          179 AASVRSGAASFLGALSRG----------PGTRWTLVD--------FLRSQNGEQITALSWGPDGRYLASAS---YESSSF  237 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~---~d~g~i  237 (350)
                      ...........+..+.+.          .++.+.+++        .+..|. ..|.+++|+|++..+++.+   .| |.|
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d-~~i  286 (401)
T 4aez_A          209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN-AAVKAVAWCPWQSNLLATGGGTMD-KQI  286 (401)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS-SCCCEEEECTTSTTEEEEECCTTT-CEE
T ss_pred             eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc-ceEEEEEECCCCCCEEEEecCCCC-CEE
Confidence            333333333333333333          334444443        345564 7899999999876665543   47 799


Q ss_pred             EEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe--cCCeEEEEeCCCCcee---ccccCCCCeEEEEEcCCCCEEEE
Q 018806          238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK--FDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~--~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~  312 (350)
                      ++||+.+++......+...+.+++|+|++++|++++  .|+.|++||+.+++..   .+..|...|.+++|+|+|++|++
T Consensus       287 ~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s  366 (401)
T 4aez_A          287 HFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST  366 (401)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence            999999998887777888999999999999999854  8999999999987653   35688999999999999999998


Q ss_pred             EECCCeEEEEEEeCCC
Q 018806          313 AFAGSLTLGSIHFASK  328 (350)
Q Consensus       313 ~~~~~~~~~~~~~~~~  328 (350)
                      ++.+ ..+..|++...
T Consensus       367 ~~~d-g~i~iw~~~~~  381 (401)
T 4aez_A          367 AASD-ENLKFWRVYDG  381 (401)
T ss_dssp             ECTT-SEEEEEECCC-
T ss_pred             EeCC-CcEEEEECCCC
Confidence            8633 35566666543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.4e-27  Score=209.76  Aligned_cols=208  Identities=11%  Similarity=0.149  Sum_probs=155.7

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEE-----------------E----------EEccCCCCCceeEecCCCCCCeeEEEE
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVI-----------------V----------RDYEDSEGKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~-----------------i----------w~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (350)
                      ..|.+++|||||+++|+++.|++|+                 +          |++..  ++....+...|...|.+++|
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~--~~~~~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFEL--AQQNGLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSC--CCSSCSSTTSCSCCEEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEe--CCCceEeecCCCCcEEEEEE
Confidence            4699999999999999999999994                 1          11211  11111222256788999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCC----CCceeeEEECCCCCeEE
Q 018806          153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWGPDGRYLA  228 (350)
Q Consensus       153 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~  228 (350)
                      ||+|..+++++.||.|++||...                           +...+. |+    ...+.+++|||||++|+
T Consensus        94 SPdG~~LAs~s~dg~V~iwd~~~---------------------------~l~~l~-~~~~~~~~sv~svafSPDG~~LA  145 (588)
T 2j04_A           94 SPIDDWMAVLSNNGNVSVFKDNK---------------------------MLTNLD-SKGNLSSRTYHCFEWNPIESSIV  145 (588)
T ss_dssp             CSSSSCEEEEETTSCEEEEETTE---------------------------EEEECC-CSSCSTTTCEEEEEECSSSSCEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCc---------------------------eeeecc-CCCccccccEEEEEEcCCCCEEE
Confidence            99999999999999999999541                           123344 43    12599999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCc--------eee----eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee----cc-
Q 018806          229 SASYESSSFTIWDVAQGLG--------TPI----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PW-  291 (350)
Q Consensus       229 ~~~~d~g~i~iwd~~~~~~--------~~~----~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~----~~-  291 (350)
                      +++.| |+|++||+.++..        ..+    .+|...|.+++|+|+|  +++++.|++|++||+.+++..    .+ 
T Consensus       146 sgs~D-GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          146 VGNED-GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEETT-SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEcCC-CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            99999 7999999998853        223    3455799999999999  888889999999999988753    24 


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC-CCc-eeeccccccee
Q 018806          292 SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLD-AHLLPVDLPDI  344 (350)
Q Consensus       292 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~~~  344 (350)
                      ..|...|.+++|+  |+.|+++++  ..+..|++.+... .+. +|...+....+
T Consensus       223 ~~h~~~V~svaFs--g~~LASa~~--~tIkLWd~~~~~~~~~~~gh~~~V~~va~  273 (588)
T 2j04_A          223 NASRRKITDLKIV--DYKVVLTCP--GYVHKIDLKNYSISSLKTGSLENFHIIPL  273 (588)
T ss_dssp             CCCSSCCCCEEEE--TTEEEEECS--SEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred             ccccCcEEEEEEE--CCEEEEEeC--CeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence            3677899999999  688988875  3666666655443 222 67776654443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=4e-26  Score=202.89  Aligned_cols=223  Identities=14%  Similarity=0.073  Sum_probs=166.5

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCC----CCceeEecCCCCCCeeEEEEeeC----C---CeEEEEecCCc
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----GKDACILTSDSQRDVKVLEWRPN----G---GRSLSVGCKGG  167 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~----~---~~l~~~~~d~~  167 (350)
                      ...|++++|+|  ++|++++.||.|++|++....    ......+ .+|...|.+++|+|+    +   ..+++++.|+.
T Consensus        16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~   92 (397)
T 1sq9_A           16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD   92 (397)
T ss_dssp             SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred             hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence            34599999999  899999999999999997532    1134444 479999999999999    8   88999999999


Q ss_pred             EEEEecCCCCC-----Cceeeccc----ccccceecCC---------------CCCceEEeeecc---------------
Q 018806          168 ICIWAPSYPGN-----AASVRSGA----ASFLGALSRG---------------PGTRWTLVDFLR---------------  208 (350)
Q Consensus       168 v~iwd~~~~~~-----~~~~~~~~----~~~~~~~~~~---------------~~~~~~~~~~~~---------------  208 (350)
                      |++|++.....     ...+....    ...+..+.+.               .++.+.+++.-.               
T Consensus        93 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  172 (397)
T 1sq9_A           93 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT  172 (397)
T ss_dssp             EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred             EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCc
Confidence            99999986554     22222111    1222223332               333333333221               


Q ss_pred             ----------CCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-e---c---CCCeEEEEEcCCCCEEEE
Q 018806          209 ----------SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-R---G---FGGLSILKWSPTGDYFFA  271 (350)
Q Consensus       209 ----------~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~---~---~~~v~~~~~sp~g~~l~~  271 (350)
                                ..+...|.+++|+|++ .|++++.+ |.|++||+++++..... .   |   ...+.+++|+|++++|++
T Consensus       173 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          173 LELQGTVESPMTPSQFATSVDISERG-LIATGFNN-GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence                      1123679999999999 99999988 79999999988766544 4   5   889999999999999999


Q ss_pred             EecC---CeEEEEeCCCCcee-cccc-------------CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          272 AKFD---GTFYLWETNTWTSE-PWSS-------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       272 ~~~d---~~v~iwd~~~~~~~-~~~~-------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ++.|   +.|++||+++++.. .+..             |...|.+++|+|++++|++++.+ ..+..|++..
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~  322 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-GKLRFWDVKT  322 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-SEEEEEETTT
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-CeEEEEEcCC
Confidence            9999   99999999998873 4555             88999999999999999988733 3455555543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.3e-26  Score=195.84  Aligned_cols=217  Identities=14%  Similarity=0.128  Sum_probs=160.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|.+++|+|++++|++++.|+.+++|++.............+|...|.+++|  +++.+++++.|+.|++||..  ..
T Consensus        59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~--~~  134 (313)
T 3odt_A           59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG--SL  134 (313)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT--EE
T ss_pred             CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC--cE
Confidence            347999999999999999999999999998654333323333579999999999  45788888889999999932  21


Q ss_pred             Cceeecccccccce-----------ecCCCCCceEEee------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          179 AASVRSGAASFLGA-----------LSRGPGTRWTLVD------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       179 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                      ...+. .....+..           +..+.++.+.+++      .+...+...+.+++|+|+++ +++++.+ |.|++||
T Consensus       135 ~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d-g~i~i~d  211 (313)
T 3odt_A          135 VYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND-GLIKLVD  211 (313)
T ss_dssp             EEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT-SEEEEEE
T ss_pred             EEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCC-CeEEEEE
Confidence            11111 11111111           2333444544443      34452347899999999998 8888888 7999999


Q ss_pred             CCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          242 VAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       242 ~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                      +++++... +..|...+.+++|+|++ .|++++.|+.|++||+++++. ..+..|...|.+++|+|+|++++.+.++.+.
T Consensus       212 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~  290 (313)
T 3odt_A          212 MHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVR  290 (313)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEE
T ss_pred             CCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEE
Confidence            99887765 44588999999999999 588999999999999999987 4566788899999999999965533355444


Q ss_pred             EEEE
Q 018806          320 LGSI  323 (350)
Q Consensus       320 ~~~~  323 (350)
                      +|.+
T Consensus       291 iw~~  294 (313)
T 3odt_A          291 IFSQ  294 (313)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            4443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=2.3e-25  Score=197.96  Aligned_cols=220  Identities=15%  Similarity=0.166  Sum_probs=164.8

Q ss_pred             ccCeeEEEEecC----C---CEEEEEECCCeEEEEEccCCCCCc-----eeEecCCC-----CCCeeEEEEe----eCCC
Q 018806           99 EVDLQGVSWHQH----K---HIVAFISGSTQVIVRDYEDSEGKD-----ACILTSDS-----QRDVKVLEWR----PNGG  157 (350)
Q Consensus        99 ~~~V~~v~~sp~----g---~~la~~s~d~~i~iw~~~~~~~~~-----~~~~~~~~-----~~~v~~~~~s----p~~~  157 (350)
                      ...|++++|+|+    +   ++|++++.|+.|++|++..  +..     ...+ ..|     ...|.+++|+    |++.
T Consensus        62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  138 (397)
T 1sq9_A           62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR--EDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLS  138 (397)
T ss_dssp             TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE--CTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----C
T ss_pred             CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC--Ccccccccceee-cccccccCCCcEEEEEEeeccCCCCc
Confidence            345999999999    9   9999999999999999975  332     3333 456     5899999999    9988


Q ss_pred             e-EEEEecCCcEEEEecCC------CCCCc-----eee------cccccccceecCCC---------CCceEEe------
Q 018806          158 R-SLSVGCKGGICIWAPSY------PGNAA-----SVR------SGAASFLGALSRGP---------GTRWTLV------  204 (350)
Q Consensus       158 ~-l~~~~~d~~v~iwd~~~------~~~~~-----~~~------~~~~~~~~~~~~~~---------~~~~~~~------  204 (350)
                      . +++++.|+.|++||+..      .....     .+.      ......+..+.+.+         ++.+.++      
T Consensus       139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  218 (397)
T 1sq9_A          139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR  218 (397)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE
T ss_pred             eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCc
Confidence            8 88888899999999986      44443     332      11122233333333         3333333      


Q ss_pred             --eeccC---C---CCCceeeEEECCCCCeEEEEEeC---CCeEEEEeCCCCCceee-ee-------------cCCCeEE
Q 018806          205 --DFLRS---Q---NGEQITALSWGPDGRYLASASYE---SSSFTIWDVAQGLGTPI-RR-------------GFGGLSI  259 (350)
Q Consensus       205 --~~~~~---~---~~~~v~~~~~sp~g~~l~~~~~d---~g~i~iwd~~~~~~~~~-~~-------------~~~~v~~  259 (350)
                        ..+..   |   . ..|.+++|+|++++|++++.+   + .|++||+++++.... ..             |...+.+
T Consensus       219 ~~~~~~~~~~h~~~~-~~i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (397)
T 1sq9_A          219 PLYNFESQHSMINNS-NSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS  296 (397)
T ss_dssp             EEEEEECCC---CCC-CCEEEEEECSSTTEEEEEEEETTEE-EEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred             eeEEEeccccccccC-CccceEEECCCCCEEEEEecCCCCc-eEEEEECCCCcccceeccCcccccccccccccCCcEEE
Confidence              24455   5   4 689999999999999999988   5 999999998876553 34             7889999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccc------cC---------------CCCeEEEEEcCCC----------
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS------ST---------------SGFVTGATWDPEG----------  307 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~------~~---------------~~~v~~~~~s~~g----------  307 (350)
                      ++|+|++++|++++.|+.|++||+++++.. .+.      .|               ...|.+++|+|+|          
T Consensus       297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  376 (397)
T 1sq9_A          297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN  376 (397)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence            999999999999999999999999998873 344      56               8899999999998          


Q ss_pred             CEEEEEE-CCCeEEEEE
Q 018806          308 RMILLAF-AGSLTLGSI  323 (350)
Q Consensus       308 ~~l~~~~-~~~~~~~~~  323 (350)
                      ++|++++ ++.+.+|.+
T Consensus       377 ~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          377 ESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             CEEEEEETTTEEEEEEE
T ss_pred             ceEEEecCCCcEEEEEc
Confidence            6888877 444444444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=2.1e-26  Score=223.25  Aligned_cols=219  Identities=15%  Similarity=0.226  Sum_probs=171.4

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|++++|||+|++||+++.||.|+|||+..  +.....+ ..|...|.+++|+|+++.+++++.|+.|++||+..+...
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--QVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCC--CceEEEE-ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            3499999999999999999999999999954  5555555 479999999999999999999999999999999865544


Q ss_pred             ceeecccccccceecCCC----------CCceEEe---------eeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEE
Q 018806          180 ASVRSGAASFLGALSRGP----------GTRWTLV---------DFLRSQNGEQITALSWGP-DGRYLASASYESSSFTI  239 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~----------~~~~~~~---------~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~i  239 (350)
                      ..+. .....+..+.+.+          ++.+.++         ..+.+|. ..|.+++|+| +++.|++++.| |+|++
T Consensus        91 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d-g~v~v  167 (814)
T 3mkq_A           91 VDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD-RTVKV  167 (814)
T ss_dssp             EEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS-SCEEEEEEETTEEEEEEEEETT-SEEEE
T ss_pred             EEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC-CcEEEEEEEcCCCCEEEEEeCC-CeEEE
Confidence            4332 2222233333333          3333333         3445565 6899999999 88999999999 79999


Q ss_pred             EeCCCCCceeee-ec-CCCeEEEEEcC--CCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          240 WDVAQGLGTPIR-RG-FGGLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       240 wd~~~~~~~~~~-~~-~~~v~~~~~sp--~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ||+.++...... .+ ...+.+++|+|  ++.+|++++.||.|++||+++++. ..+..|...|.+++|+|+|++|++++
T Consensus       168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            999887655433 33 38899999999  999999999999999999999887 44667889999999999999999887


Q ss_pred             -CCCeEEEEEEeC
Q 018806          315 -AGSLTLGSIHFA  326 (350)
Q Consensus       315 -~~~~~~~~~~~~  326 (350)
                       ++.+  ..|++.
T Consensus       248 ~dg~v--~vwd~~  258 (814)
T 3mkq_A          248 EDGTL--KIWNSS  258 (814)
T ss_dssp             TTSCE--EEEETT
T ss_pred             CCCeE--EEEECC
Confidence             4444  444443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=202.37  Aligned_cols=223  Identities=11%  Similarity=0.159  Sum_probs=163.6

Q ss_pred             ccCeeEEEEecC---CCEEEEEECCCeEEEEEccCCCCC-ceeEecCCCCCCeeEEEE------eeCCCeEEEEecCCcE
Q 018806           99 EVDLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSEGK-DACILTSDSQRDVKVLEW------RPNGGRSLSVGCKGGI  168 (350)
Q Consensus        99 ~~~V~~v~~sp~---g~~la~~s~d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~------sp~~~~l~~~~~d~~v  168 (350)
                      ...|.+++|+|+   +++|++++.|+.|++|++..  +. ....+ .+|...|.+++|      +|+++.+++++.|+.|
T Consensus        65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--PEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--CSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--CCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            347999999999   79999999999999999964  33 33444 589999999965      6788889999999999


Q ss_pred             EEEecCCCCC-Cceeeccc---------------ccccce--ecCCCCCceEEeee-------ccCCCCCceeeEEECC-
Q 018806          169 CIWAPSYPGN-AASVRSGA---------------ASFLGA--LSRGPGTRWTLVDF-------LRSQNGEQITALSWGP-  222 (350)
Q Consensus       169 ~iwd~~~~~~-~~~~~~~~---------------~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~sp-  222 (350)
                      ++||+..... ...+....               +.+...  +..+.++.+.+++.       ...|. ..|.+++|+| 
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~  220 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK-NGVCSLEFDRK  220 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEESCS
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCC-CceEEEEcCCC
Confidence            9999986652 22222111               111111  12223344444432       23343 6899999999 


Q ss_pred             --CCCeEEEEEeCCCeEEEEeCCCCCcee-e-----eecCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCce-----
Q 018806          223 --DGRYLASASYESSSFTIWDVAQGLGTP-I-----RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-----  288 (350)
Q Consensus       223 --~g~~l~~~~~d~g~i~iwd~~~~~~~~-~-----~~~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~-----  288 (350)
                        ++++|++++.+ |.|++||+++++... +     ..|...+.+++|+|+++ +|++++.||.|++||++++..     
T Consensus       221 ~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          221 DISMNKLVATSLE-GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             SSSCCEEEEEEST-TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred             CCCCCEEEEECCC-CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence              99999999999 799999998765432 2     26788999999999998 799999999999999986432     


Q ss_pred             ---------------eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          289 ---------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       289 ---------------~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                                     ..+..|...|++++|+|+|++|+++++.+..+..|++.
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence                           33557889999999999999998433333345555554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=2.6e-26  Score=199.87  Aligned_cols=197  Identities=10%  Similarity=0.025  Sum_probs=158.1

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcEEEEec-CCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP-SYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~-~~~  176 (350)
                      ...|++++|+|++++|++++.|+.|++|++..............|...|.+++|+|+++ .+++++.|+.|++||+ ...
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            45699999999999999999999999999975332222223347899999999999988 8888888999999999 632


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccC--CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC---------C
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---------G  245 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~---------~  245 (350)
                      .                          ...+.+  |. ..|.+++|+| ++.|++++.| |.|++||+++         +
T Consensus        91 ~--------------------------~~~~~~~~~~-~~v~~l~~~~-~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~  141 (342)
T 1yfq_A           91 S--------------------------FQALTNNEAN-LGICRICKYG-DDKLIAASWD-GLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             S--------------------------EEECBSCCCC-SCEEEEEEET-TTEEEEEETT-SEEEEECHHHHTTBCEEEEE
T ss_pred             c--------------------------eEeccccCCC-CceEEEEeCC-CCEEEEEcCC-CeEEEEcccccccccccccC
Confidence            2                          123455  64 7999999999 9999999999 6999999987         6


Q ss_pred             CceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC-Cce---eccccCCCCeEEEEEcC-CCCEEEEEE-CCCeE
Q 018806          246 LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS---EPWSSTSGFVTGATWDP-EGRMILLAF-AGSLT  319 (350)
Q Consensus       246 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~-~~~---~~~~~~~~~v~~~~~s~-~g~~l~~~~-~~~~~  319 (350)
                      +......+...+.+++|+|++  +++++.|+.|++||+++ ++.   .....+...+.+++|+| ++++|++++ ++.+.
T Consensus       142 ~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  219 (342)
T 1yfq_A          142 LNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA  219 (342)
T ss_dssp             SCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred             CeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEE
Confidence            655555578899999999987  89999999999999998 553   23446788999999999 999999888 44445


Q ss_pred             EEEEEeC
Q 018806          320 LGSIHFA  326 (350)
Q Consensus       320 ~~~~~~~  326 (350)
                      +|.++..
T Consensus       220 i~~~~~~  226 (342)
T 1yfq_A          220 VEFFDDQ  226 (342)
T ss_dssp             EEECCTT
T ss_pred             EEEEcCC
Confidence            5554443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=6.2e-26  Score=204.17  Aligned_cols=206  Identities=17%  Similarity=0.307  Sum_probs=157.1

Q ss_pred             ccCeeEEEEecC-CCEEEEEECCCeEEEEEccCC--------CCCceeEecCCCCCCeeEEEEeeCCC-eEEEEecCCcE
Q 018806           99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS--------EGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGI  168 (350)
Q Consensus        99 ~~~V~~v~~sp~-g~~la~~s~d~~i~iw~~~~~--------~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v  168 (350)
                      ...|++++|+|+ +++||+++.+|.|++|++...        .......+ .+|...|.+++|+|++. .+++++.||.|
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  206 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTI  206 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence            446999999997 689999999999999999641        12333333 47999999999999987 77777779999


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCCC-
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL-  246 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~~-  246 (350)
                      ++|++..........                  .....+.+|. ..|.+++|+| ++..|++++.+ |.|++||++++. 
T Consensus       207 ~vwd~~~~~~~~~~~------------------~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~d-g~i~i~d~~~~~~  266 (430)
T 2xyi_A          207 CLWDINATPKEHRVI------------------DAKNIFTGHT-AVVEDVAWHLLHESLFGSVADD-QKLMIWDTRNNNT  266 (430)
T ss_dssp             EEEETTSCCBGGGEE------------------ECSEEECCCS-SCEEEEEECSSCTTEEEEEETT-SEEEEEETTCSCS
T ss_pred             EEEeCCCCCCCCcee------------------ccceeecCCC-CCEeeeEEeCCCCCEEEEEeCC-CeEEEEECCCCCC
Confidence            999998533221111                  1123355665 7899999999 67788888888 799999999873 


Q ss_pred             --c-eeeeecCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCE-EEEEE-CCCe
Q 018806          247 --G-TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRM-ILLAF-AGSL  318 (350)
Q Consensus       247 --~-~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~-l~~~~-~~~~  318 (350)
                        . ..+..|...+.+++|+|+++ +|++++.||.|++||+++.+.  ..+..|...|++++|+|+++. |++++ ++.+
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i  346 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL  346 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence              3 23456889999999999987 588999999999999998442  456679999999999999975 55555 4444


Q ss_pred             EEEEEEe
Q 018806          319 TLGSIHF  325 (350)
Q Consensus       319 ~~~~~~~  325 (350)
                      .+|.+..
T Consensus       347 ~iwd~~~  353 (430)
T 2xyi_A          347 HVWDLSK  353 (430)
T ss_dssp             EEEEGGG
T ss_pred             EEEeCCC
Confidence            4444433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-27  Score=211.83  Aligned_cols=207  Identities=12%  Similarity=0.086  Sum_probs=154.6

Q ss_pred             cCeeEEEEec-CCCEEEEEECCCeEEEEEccC---CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC
Q 018806          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYED---SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ..|++++|+| ++++||+|+.||.|+|||+..   .... .......|...|.+++|+|++..+++++.|+.|++||+..
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~  142 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY-SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH  142 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence            4599999999 999999999999999999864   2111 1122225899999999999988999999999999999952


Q ss_pred             C--CCCceeecccccccceecCCCCCceEEeeecc--C--CCCCceeeEE--ECCCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          176 P--GNAASVRSGAASFLGALSRGPGTRWTLVDFLR--S--QNGEQITALS--WGPDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       176 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~~~--~sp~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      .  +........                .....+.  .  + ...+.++.  +++++.+|++++.| |.|++||+++++.
T Consensus       143 ~~~~~~~~~~~~----------------~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~  204 (437)
T 3gre_A          143 YQQESEVKFLNC----------------ECIRKINLKNFGK-NEYAVRMRAFVNEEKSLLVALTNL-SRVIIFDIRTLER  204 (437)
T ss_dssp             EEETTEEEEEEE----------------EEEEEEEGGGGSS-CCCEEEEEEEECSSCEEEEEEETT-SEEEEEETTTCCE
T ss_pred             ccCCceeecccc----------------ceeEEEEccCccc-ccCceEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCee
Confidence            1  111111110                0111111  1  2 35777777  67899999999999 6999999999887


Q ss_pred             eeee-e--cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cc-cCCCCeEEEEEc----CCCCEEEEEECCCe
Q 018806          248 TPIR-R--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWD----PEGRMILLAFAGSL  318 (350)
Q Consensus       248 ~~~~-~--~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~s----~~g~~l~~~~~~~~  318 (350)
                      .... .  |...|.+++|+|++++|++++.||.|++||+++++... +. .|...|.+++|+    +++++|++++. +.
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~-dg  283 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS-KT  283 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST-TE
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC-CC
Confidence            6544 3  67899999999999999999999999999999988744 33 677789999555    56778887653 34


Q ss_pred             EEEEEEeC
Q 018806          319 TLGSIHFA  326 (350)
Q Consensus       319 ~~~~~~~~  326 (350)
                      .+..|++.
T Consensus       284 ~i~iwd~~  291 (437)
T 3gre_A          284 FLTIWNFV  291 (437)
T ss_dssp             EEEEEETT
T ss_pred             cEEEEEcC
Confidence            55666654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=5.4e-26  Score=192.58  Aligned_cols=221  Identities=12%  Similarity=0.074  Sum_probs=154.8

Q ss_pred             cchhhhhhhhhhccccccCCCCcCCCC-------ccCeeEEEEecC----CCEEEEEEC--------------------C
Q 018806           72 GLFSTLHGIISHSIKPLLHPDHVHLLP-------EVDLQGVSWHQH----KHIVAFISG--------------------S  120 (350)
Q Consensus        72 ~~~~~~~gh~~~~~~~~~~p~~~~~~~-------~~~V~~v~~sp~----g~~la~~s~--------------------d  120 (350)
                      .++..+++|...+....+.|+...++-       ...|++++++||    ++++++++.                    |
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d  156 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSD  156 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTT
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCC
Confidence            345677788888888888886444332       347999999999    888887653                    8


Q ss_pred             CeEEEEEccCCCCCceeEecCCCCCCeeEEEEee---CCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCC
Q 018806          121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP---NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP  197 (350)
Q Consensus       121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  197 (350)
                      +.|++|++. ++++..... ..|...+..++|+|   ++..+++++.|++|+|||+.+++..                  
T Consensus       157 ~~V~~~~~s-~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l------------------  216 (356)
T 2w18_A          157 QQVEVMTFA-EDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL------------------  216 (356)
T ss_dssp             CEEEEEEEC-TTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE------------------
T ss_pred             CcEEEEEEC-CCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE------------------
Confidence            888888884 335444443 36788888888988   6677888888999999999865433                  


Q ss_pred             CCceEEeeeccCCC--CCceeeEEECCCCCeE------------EEEEeCCCeEEEEeCCCCCceeee------ecCCCe
Q 018806          198 GTRWTLVDFLRSQN--GEQITALSWGPDGRYL------------ASASYESSSFTIWDVAQGLGTPIR------RGFGGL  257 (350)
Q Consensus       198 ~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l------------~~~~~d~g~i~iwd~~~~~~~~~~------~~~~~v  257 (350)
                             .++.+|+  ...+.+++|+|+|+.+            ++++.| ++|++||..+++.....      +|...+
T Consensus       217 -------~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D-~tIklWd~~tgk~l~v~~~~~p~Gh~~~~  288 (356)
T 2w18_A          217 -------KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV-FQLIVINPKTTLSVGVMLYCLPPGQAGRF  288 (356)
T ss_dssp             -------EEEECCC---CCCEEEEEEETTEEEEEEC------------CC-EEEEEEETTTTEEEEEEEECCCTTCCCCE
T ss_pred             -------EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC-cEEEEEECCCCEEEEEEEeeccCCCccee
Confidence                   3344332  1367778999999887            456677 59999999998765433      233344


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeE-EEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVT-GATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~-~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                      .+..+  ++.++++++.|++|+|||+.+++.. .+.+|...+. .++|+|||++|++|+ |+.+++|+
T Consensus       289 lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          289 LEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             Ecccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            44444  4788999999999999999999984 5566766554 689999999999887 55555554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=3.3e-25  Score=198.54  Aligned_cols=222  Identities=14%  Similarity=0.118  Sum_probs=161.7

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +...|++++|+|++++|++++.|+.|++||+..  ++....+ .+|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--GSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC--CcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            345799999999999999999999999999964  5555555 4799999999999999999999999999999998554


Q ss_pred             CCceeeccc-----------------------ccccceecCC----------CCCceEEee--------eccCCCCCcee
Q 018806          178 NAASVRSGA-----------------------ASFLGALSRG----------PGTRWTLVD--------FLRSQNGEQIT  216 (350)
Q Consensus       178 ~~~~~~~~~-----------------------~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~~v~  216 (350)
                      ....+....                       ......+.++          .++.+.+++        .+...+...|.
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  294 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN  294 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence            433332210                       0111122222          233344443        22222246899


Q ss_pred             eEEECCCCC-eEEEEEeCCCeEEEEeCCCCCc--eeeee-cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce----
Q 018806          217 ALSWGPDGR-YLASASYESSSFTIWDVAQGLG--TPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----  288 (350)
Q Consensus       217 ~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~~~--~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~----  288 (350)
                      +++|+|+++ +|++++.| |.|++||+++++.  ..+.. +...+.++.| +++++|++++.|+.|++||+...+.    
T Consensus       295 ~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~  372 (420)
T 3vl1_A          295 SLTVDGNNANYIYAGYEN-GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPA  372 (420)
T ss_dssp             EEEECSSCTTEEEEEETT-SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCE
T ss_pred             eEEEeCCCCCEEEEEeCC-CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccc
Confidence            999999999 89999988 7999999998754  33444 4566777754 5888999999999999999987422    


Q ss_pred             ------eccccCCCCeEEEEEcCCCC---EEEEEECCCeEEEEEEe
Q 018806          289 ------EPWSSTSGFVTGATWDPEGR---MILLAFAGSLTLGSIHF  325 (350)
Q Consensus       289 ------~~~~~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~~~~~  325 (350)
                            ..+..+...|.+++|+|+++   .|+++++.+ .+..|++
T Consensus       373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g-~~~~~~~  417 (420)
T 3vl1_A          373 IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN-FCALYNL  417 (420)
T ss_dssp             ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT-EEEEEES
T ss_pred             eeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc-eEEEEec
Confidence                  23456788999999999999   555554332 4444444

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=9.9e-26  Score=198.41  Aligned_cols=222  Identities=11%  Similarity=0.050  Sum_probs=164.5

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeE-ecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      +...|++++|+|++++|++++.|+.|++|++..  ++.... ....|...|.+++|+|+++.+++++.|+.|++||+...
T Consensus        51 h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  128 (372)
T 1k8k_C           51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  128 (372)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC--CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC
Confidence            345799999999999999999999999999964  332222 22468899999999999988999989999999999855


Q ss_pred             CCC---ceeecccccccceecC----------CCCCceEEee--------------------------eccCCCCCceee
Q 018806          177 GNA---ASVRSGAASFLGALSR----------GPGTRWTLVD--------------------------FLRSQNGEQITA  217 (350)
Q Consensus       177 ~~~---~~~~~~~~~~~~~~~~----------~~~~~~~~~~--------------------------~~~~~~~~~v~~  217 (350)
                      ...   ..+.......+..+.+          +.++.+.+++                          .+.+|. ..|.+
T Consensus       129 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  207 (372)
T 1k8k_C          129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-GWVHG  207 (372)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-SCEEE
T ss_pred             CcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC-CeEEE
Confidence            421   1111211222222222          2334444444                          233454 68999


Q ss_pred             EEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC--Cce------
Q 018806          218 LSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT--WTS------  288 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~--~~~------  288 (350)
                      ++|+|++++|++++.| |.|++||+++++... +..+...+.+++|+|++++|+++ .|+.|++|++++  ++.      
T Consensus       208 ~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          208 VCFSANGSRVAWVSHD-STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             EEECSSSSEEEEEETT-TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred             EEECCCCCEEEEEeCC-CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence            9999999999999999 699999999887664 44567799999999999988887 899999999987  421      


Q ss_pred             ---------------------------------ecc-ccCCCCeEEEEEc-CCC---CEEEEEECCCeEEEEEEe
Q 018806          289 ---------------------------------EPW-SSTSGFVTGATWD-PEG---RMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       289 ---------------------------------~~~-~~~~~~v~~~~~s-~~g---~~l~~~~~~~~~~~~~~~  325 (350)
                                                       ..+ .+|...|++++|. ++|   ++|++++.+ ..+..|++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D-g~i~~W~~  359 (372)
T 1k8k_C          286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD-GGMSIWDV  359 (372)
T ss_dssp             CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT-SEEEEEEH
T ss_pred             CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCC-CceEEEEe
Confidence                                             122 3788999999966 676   899988733 24555554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-25  Score=193.43  Aligned_cols=234  Identities=14%  Similarity=0.054  Sum_probs=169.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++| |++++|++++.||.|++||+..  +.....+ ..|...|.+++|+|+++.+++++.|+.+++|++.......
T Consensus        20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~   95 (313)
T 3odt_A           20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDD--QWLGTVV-YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED   95 (313)
T ss_dssp             CEEEEEE-EETTEEEEEETTSEEEEEEESS--SEEEEEE-EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred             CcEEEEe-cCCCEEEEEEcCCcEEEEECCC--CEEEEEe-ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence            4999999 9999999999999999999953  4443443 4688999999999999999999999999999987543221


Q ss_pred             ee--ecccccccce--------ecCCCCCceEEee------eccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCC
Q 018806          181 SV--RSGAASFLGA--------LSRGPGTRWTLVD------FLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       181 ~~--~~~~~~~~~~--------~~~~~~~~~~~~~------~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~  243 (350)
                      .+  .......+..        +..+.++.+.+++      .+..|. ..+.++.|+| +++.+++++.+ |.|++||..
T Consensus        96 ~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~  173 (313)
T 3odt_A           96 PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHN-ASVWDAKVVSFSENKFLTASAD-KTIKLWQND  173 (313)
T ss_dssp             C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCS-SCEEEEEEEETTTTEEEEEETT-SCEEEEETT
T ss_pred             cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCC-CceeEEEEccCCCCEEEEEECC-CCEEEEecC
Confidence            11  1112222222        2333444444443      445565 7899999988 89999999999 799999943


Q ss_pred             CCCceeeee-cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 018806          244 QGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  321 (350)
Q Consensus       244 ~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  321 (350)
                      .. ...+.. +...+.+++|+|++. +++++.|+.|++||+++++.. .+..|...|.+++|+|+++ |++++. +..+.
T Consensus       174 ~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~-dg~v~  249 (313)
T 3odt_A          174 KV-IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGE-DRTVR  249 (313)
T ss_dssp             EE-EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEET-TSEEE
T ss_pred             ce-EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEec-CCEEE
Confidence            22 222333 778899999999998 899999999999999998874 5667999999999999995 555552 23455


Q ss_pred             EEEeCCCCC--CCceeeccccccee
Q 018806          322 SIHFASKPP--SLDAHLLPVDLPDI  344 (350)
Q Consensus       322 ~~~~~~~~~--~~~~~~~~v~~~~~  344 (350)
                      .|++.....  .+..|..++....+
T Consensus       250 iwd~~~~~~~~~~~~~~~~i~~~~~  274 (313)
T 3odt_A          250 IWSKENGSLKQVITLPAISIWSVDC  274 (313)
T ss_dssp             EECTTTCCEEEEEECSSSCEEEEEE
T ss_pred             EEECCCCceeEEEeccCceEEEEEE
Confidence            555544322  44455555554443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=9.3e-26  Score=199.80  Aligned_cols=159  Identities=9%  Similarity=0.145  Sum_probs=133.0

Q ss_pred             ccCeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEec--CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC
Q 018806           99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus        99 ~~~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ...|.+++|+| ++++|++++.|+.|++||+..   .....+.  ..|...|.+++|+|++..+++++.|+.|++||+. 
T Consensus       118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-  193 (383)
T 3ei3_B          118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-  193 (383)
T ss_dssp             TCBEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-
T ss_pred             CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-
Confidence            34799999999 789999999999999999963   3333332  2345789999999999999999999999999985 


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC-eEEEEEeCCCeEEEEeCCC----CCceee
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ----GLGTPI  250 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~----~~~~~~  250 (350)
                      ..                         ....+.+|. ..|.+++|+|+++ .|++++.| |+|++||+++    +.....
T Consensus       194 ~~-------------------------~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~  246 (383)
T 3ei3_B          194 GH-------------------------EIFKEKLHK-AKVTHAEFNPRCDWLMATSSVD-ATVKLWDLRNIKDKNSYIAE  246 (383)
T ss_dssp             SC-------------------------EEEEEECSS-SCEEEEEECSSCTTEEEEEETT-SEEEEEEGGGCCSTTCEEEE
T ss_pred             CC-------------------------EEEEeccCC-CcEEEEEECCCCCCEEEEEeCC-CEEEEEeCCCCCcccceEEE
Confidence            22                         133456665 7999999999999 88999989 6999999998    445555


Q ss_pred             eecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCCce
Q 018806          251 RRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       251 ~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      ..|...+.+++|+| ++++|++++.|+.|++||+++++.
T Consensus       247 ~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          247 MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            67889999999999 999999999999999999998776

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.4e-26  Score=204.55  Aligned_cols=222  Identities=13%  Similarity=0.215  Sum_probs=168.2

Q ss_pred             CeeEEEEecCCC-EEEEE----------ECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEE
Q 018806          101 DLQGVSWHQHKH-IVAFI----------SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~-~la~~----------s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~  169 (350)
                      .|.+++|+|+++ +|+++          +.|+.|+||++......... ....|...|.+++|+|+++.+++++.|+.|+
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-ASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-CCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-EEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            588999999997 99998          88999999999642211112 2235888999999999998898888999999


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCC--
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL--  246 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~--  246 (350)
                      +||+.......                     .....+.+|. ..|.+++|+|+ +++|++++.| |.|++||+.+++  
T Consensus        93 vw~~~~~~~~~---------------------~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~  149 (416)
T 2pm9_A           93 LYSTNEANNAI---------------------NSMARFSNHS-SSVKTVKFNAKQDNVLASGGNN-GEIFIWDMNKCTES  149 (416)
T ss_dssp             EECCSSTTSCC---------------------CEEEECCCSS-SCCCEEEECSSSTTBEEEECSS-SCEEBCBTTTTSSC
T ss_pred             Eeecccccccc---------------------cchhhccCCc-cceEEEEEcCCCCCEEEEEcCC-CeEEEEECCCCccc
Confidence            99998421111                     1244466775 79999999998 8899999999 699999999876  


Q ss_pred             ----cee----eeecCCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCceec-cccC------CCCeEEEEEcCCC-CE
Q 018806          247 ----GTP----IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP-WSST------SGFVTGATWDPEG-RM  309 (350)
Q Consensus       247 ----~~~----~~~~~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~------~~~v~~~~~s~~g-~~  309 (350)
                          ...    ...|...+.+++|+|+ +.+|++++.|+.|++||+++++... +..+      ...+.+++|+|++ .+
T Consensus       150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (416)
T 2pm9_A          150 PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR  229 (416)
T ss_dssp             TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred             cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence                222    2357788999999999 7899999999999999999988743 3333      7889999999998 56


Q ss_pred             EEEEECCC--eEEEEEEeCC--CC-CCCc-eeecccccceeec
Q 018806          310 ILLAFAGS--LTLGSIHFAS--KP-PSLD-AHLLPVDLPDIVS  346 (350)
Q Consensus       310 l~~~~~~~--~~~~~~~~~~--~~-~~~~-~~~~~v~~~~~~~  346 (350)
                      |++++.+.  ..+..|++..  .. ..+. +|..+|....+.+
T Consensus       230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (416)
T 2pm9_A          230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCH  272 (416)
T ss_dssp             EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECS
T ss_pred             EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCC
Confidence            77766331  1444555543  22 2555 7888887776654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.8e-25  Score=199.58  Aligned_cols=203  Identities=7%  Similarity=-0.010  Sum_probs=163.2

Q ss_pred             ccCeeEEEEecCCCEE-EEEECCCeEEEEEccCCCCCceeEecC-CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~l-a~~s~d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ...|++++|+|++++| ++++.|+.|+||++...++.....+.. .|...|.+++|+|+++.+++++.++.+++|++...
T Consensus       102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~  181 (450)
T 2vdu_B          102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI  181 (450)
T ss_dssp             CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred             CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence            4579999999999996 888899999999996223555454422 46788999999999989999888999999999744


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC---CCeEEEEEeCCCeEEEEeCCCCCceee--e
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTPI--R  251 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~d~g~i~iwd~~~~~~~~~--~  251 (350)
                      .....                     ....+.+|. ..|.+++|+|+   +++|++++.| |+|++||+++++....  .
T Consensus       182 ~~~~~---------------------~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          182 PEEKF---------------------TQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRD-EHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             CCSSC---------------------CCCCSEECS-SCEEEEEEEECTTSCEEEEEEETT-SCEEEEEESCTTCEEEECC
T ss_pred             ccccc---------------------cceeeeccc-CceEEEEEcCCCCCCcEEEEEcCC-CcEEEEECCCCceeeeeec
Confidence            33210                     011245565 79999999999   9999999999 6999999998876543  3


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--------------------------cCCCCeEEEEEcC
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------------------STSGFVTGATWDP  305 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--------------------------~~~~~v~~~~~s~  305 (350)
                      .|...|.+++|+ ++++|++++.|+.|++||+++++.....                          .....|.+++|+|
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            688999999999 9999999999999999999998863221                          2235689999999


Q ss_pred             CCCEEEEEECCCeEEEEEEe
Q 018806          306 EGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       306 ~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ++++|++++..+..+..|++
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEe
Confidence            99999999855667777777

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.8e-25  Score=195.18  Aligned_cols=197  Identities=10%  Similarity=0.034  Sum_probs=148.6

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccC-------CCCCceeEecCCCCCCeeEEEEee--CCCeEEEEecCCcEEE
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED-------SEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICI  170 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i  170 (350)
                      ..|.++.|+|+   +++++.|+++++|+.+.       .++........+|...|.+++|+|  +++.+++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            35777888888   89999999999997642       123334444446778999999999  9888888999999999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--  248 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--  248 (350)
                      ||+.....                         ......++...+.+++|+|+|++|++++.| |.|++||+++++..  
T Consensus       154 wd~~~~~~-------------------------~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-g~i~iwd~~~~~~~~~  207 (343)
T 3lrv_A          154 QSYEDDSQ-------------------------YIVHSAKSDVEYSSGVLHKDSLLLALYSPD-GILDVYNLSSPDQASS  207 (343)
T ss_dssp             EESSSSCE-------------------------EEEECCCSSCCCCEEEECTTSCEEEEECTT-SCEEEEESSCTTSCCE
T ss_pred             EECCCCcE-------------------------EEEEecCCCCceEEEEECCCCCEEEEEcCC-CEEEEEECCCCCCCcc
Confidence            99984332                         112223333579999999999999999999 79999999998865  


Q ss_pred             eeee-cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccc---cCCCCeE--EEEEcCCCCEEEEEECCCeEEE
Q 018806          249 PIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---STSGFVT--GATWDPEGRMILLAFAGSLTLG  321 (350)
Q Consensus       249 ~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~---~~~~~v~--~~~~s~~g~~l~~~~~~~~~~~  321 (350)
                      .+.. |...|.+++|+|+|.+|++++ ++.|++||+++++.. .+.   .+...+.  +++|+|+|++|++++.++..+.
T Consensus       208 ~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~  286 (343)
T 3lrv_A          208 RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT  286 (343)
T ss_dssp             ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence            4555 789999999999999999999 559999999988763 222   2333443  6999999999999775344555


Q ss_pred             EEEeC
Q 018806          322 SIHFA  326 (350)
Q Consensus       322 ~~~~~  326 (350)
                      .|++.
T Consensus       287 v~~~~  291 (343)
T 3lrv_A          287 IYKFD  291 (343)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            55553

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=6e-25  Score=195.91  Aligned_cols=238  Identities=18%  Similarity=0.269  Sum_probs=176.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+.+++|++  ..+++++.|+.|++|++..  +.........|...|.+++|+|++..+++++.|+.|++||+.......
T Consensus        95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  170 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVALERNVYVWNADS--GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR  170 (401)
T ss_dssp             TCBCEEECT--TSEEEEEETTEEEEEETTT--CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eEEEEeecC--CCEEEEECCCeEEEeeCCC--CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE
Confidence            466677775  4577888999999999964  555555555588999999999998888888889999999998655443


Q ss_pred             eeecccccccce--------ecCCCCCceEEee---------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          181 SVRSGAASFLGA--------LSRGPGTRWTLVD---------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       181 ~~~~~~~~~~~~--------~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                      .+. .....+..        +..+.++.+.+++         .+.+|. ..|.+++|+|++++|++++.| |.|++||++
T Consensus       171 ~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~  247 (401)
T 4aez_A          171 TMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS-SEVCGLAWRSDGLQLASGGND-NVVQIWDAR  247 (401)
T ss_dssp             EEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETT
T ss_pred             Eec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCC-CCeeEEEEcCCCCEEEEEeCC-CeEEEccCC
Confidence            332 22222222        2233344444433         455665 799999999999999999999 699999999


Q ss_pred             CCCcee-eeecCCCeEEEEEcCCCCE-EEEEe--cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 018806          244 QGLGTP-IRRGFGGLSILKWSPTGDY-FFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSL  318 (350)
Q Consensus       244 ~~~~~~-~~~~~~~v~~~~~sp~g~~-l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~  318 (350)
                      +++... +..|...+.+++|+|++.. +++++  .|+.|++||+++++......+...+.+++|+|++++|++++ ..+.
T Consensus       248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg  327 (401)
T 4aez_A          248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN  327 (401)
T ss_dssp             CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred             CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCC
Confidence            887665 4467889999999998754 55554  69999999999998876667788999999999999999875 2344


Q ss_pred             EEEEEEeCCC--CC--CCceeecccccceee
Q 018806          319 TLGSIHFASK--PP--SLDAHLLPVDLPDIV  345 (350)
Q Consensus       319 ~~~~~~~~~~--~~--~~~~~~~~v~~~~~~  345 (350)
                      .+..|++...  ..  .+.+|..+|....+.
T Consensus       328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s  358 (401)
T 4aez_A          328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALS  358 (401)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred             cEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence            5555655542  11  345677777665554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.94  E-value=6.1e-26  Score=199.13  Aligned_cols=217  Identities=11%  Similarity=0.175  Sum_probs=165.0

Q ss_pred             ccCeeEEEEecC----CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEec
Q 018806           99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAP  173 (350)
Q Consensus        99 ~~~V~~v~~sp~----g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~  173 (350)
                      ...|++++|+|+    +++|++++.||.|++||+..  ++....+ .+|...|.+++|+| ++..+++++.|+.|++||+
T Consensus        69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            456999999999    67999999999999999954  5555555 47999999999999 7778888888999999999


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee--
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--  251 (350)
                      ........                      ...+.+|. ..|.+++|+|++++|++++.| |.|++||+++++.....  
T Consensus       146 ~~~~~~~~----------------------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          146 QTDTLVAI----------------------FGGVEGHR-DEVLSADYDLLGEKIMSCGMD-HSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             TTTEEEEE----------------------ECSTTSCS-SCEEEEEECTTSSEEEEEETT-SCEEEEESCSHHHHHHHHH
T ss_pred             ecCeEEEE----------------------eccccccc-CceeEEEECCCCCEEEEecCC-CCEEEEECCCCccccccce
Confidence            84322111                      11124564 799999999999999999999 69999999976433211  


Q ss_pred             ---------------------------ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce---------------e
Q 018806          252 ---------------------------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---------------E  289 (350)
Q Consensus       252 ---------------------------~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~---------------~  289 (350)
                                                 .|...|.+++|+  +++|++++.|+.|++||+++++.               .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence                                       177889999998  77999999999999999987643               2


Q ss_pred             ccccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEEEeCCCCC------CCcee--ecccccceee
Q 018806          290 PWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPP------SLDAH--LLPVDLPDIV  345 (350)
Q Consensus       290 ~~~~~~~~v~~~~~s~~--g~~l~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~v~~~~~~  345 (350)
                      .+..|...|++++|+|+  |++|++++.+ ..+..|++.....      .+..|  ..+|....+.
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  344 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQKMLALGNQV-GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS  344 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSSEEEEECTT-SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC
T ss_pred             cccccCCcEEEEEEcCCCCCcEEEEEecC-CcEEEEECCCCCCccccceEEcccccCCceEEEEeC
Confidence            34467888999999999  9999988632 2444555543221      34444  5666555544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.7e-26  Score=209.34  Aligned_cols=229  Identities=12%  Similarity=0.038  Sum_probs=157.8

Q ss_pred             ccCeeEEEEecCC---------CEEEE-------------------EECCCeEEEEEccCCCCCce-eEecCCCCCCeeE
Q 018806           99 EVDLQGVSWHQHK---------HIVAF-------------------ISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKV  149 (350)
Q Consensus        99 ~~~V~~v~~sp~g---------~~la~-------------------~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~  149 (350)
                      +..|.+|+|+|++         ++||+                   ++.|++|+||++........ ......|.+.|.+
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~  212 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD  212 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence            4578888888876         56666                   45788999999965322111 1112356788999


Q ss_pred             EEEeeC------CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC
Q 018806          150 LEWRPN------GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  223 (350)
Q Consensus       150 ~~~sp~------~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  223 (350)
                      ++|+|+      ++.|++++.|++|++||+.............              -.....+.+|. ..|++++|+++
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~--------------~~p~~~l~~h~-~~v~sv~~s~~  277 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC--------------EKPSLTLSLAD-SLITTFDFLSP  277 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC--------------CSCSEEECCTT-TCEEEEEESSS
T ss_pred             EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee--------------cCceEEEEcCC-CCEEEEEecCC
Confidence            999997      4577778889999999997443211000000              00012356675 79999999986


Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCc-e-eeeecCCCeEEE--EEcCCC-CEEEEEecCCeEEEEeCCCCcee-ccccCC--
Q 018806          224 GRYLASASYESSSFTIWDVAQGLG-T-PIRRGFGGLSIL--KWSPTG-DYFFAAKFDGTFYLWETNTWTSE-PWSSTS--  295 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~-~-~~~~~~~~v~~~--~~sp~g-~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~--  295 (350)
                      + .|++++.| |+|++||++++.. . .+..|...|.++  +|+|+| ++|++++.|++|+|||+++++.. .+..|.  
T Consensus       278 ~-~lasgs~D-gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          278 T-TVVCGFKN-GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             S-EEEEEETT-SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             C-eEEEEeCC-CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            4 79999999 7999999997643 2 356788999999  578888 89999999999999999987653 333443  


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC--CCCceeecccccceee
Q 018806          296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIV  345 (350)
Q Consensus       296 ~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~  345 (350)
                      ..|.+++|+|+++.+++++++. .+..|++....  ..+.+|..+|....++
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~-tv~lwd~~~~~~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGAS-SLRAVPSRAAFAVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSS-EEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred             CcccceEeCCCcCeEEEeCCCC-cEEEEECcccccceeeecCCCceEEEEeC
Confidence            3578999999999988776433 45555554332  3566888888766654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=3.3e-25  Score=200.03  Aligned_cols=207  Identities=13%  Similarity=0.180  Sum_probs=151.0

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeE------ecCCCCCCeeEEEEeeCC-CeEEEEecCCcEEE
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI------LTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICI  170 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i  170 (350)
                      +...|++++|+|++++|+++ .|+.|++||+.. .+.....      ...+|...|.+++|+|++ ..+++++.|+.|++
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-DDLRINLWHLEI-TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE-EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC-CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            45689999999999999998 899999999952 1222221      134789999999999998 78888888999999


Q ss_pred             EecCCCCCC----ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC-C
Q 018806          171 WAPSYPGNA----ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-G  245 (350)
Q Consensus       171 wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~-~  245 (350)
                      ||+......    ..+....             .......+.+|. ..|.+++|+|+|++|++++.  |.|++||++. +
T Consensus       254 wd~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~  317 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPE-------------DPSNRSFFSEII-SSISDVKFSHSGRYMMTRDY--LSVKVWDLNMEN  317 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC------------------CCHHHHHT-TCEEEEEECTTSSEEEEEES--SEEEEEETTCCS
T ss_pred             EECcCCccccceeeEeccCC-------------CccccccccccC-ceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCc
Confidence            999855431    1111100             000000111222 48999999999999998877  4999999987 6


Q ss_pred             Cceeee-ecCCC---------------eEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-----------------
Q 018806          246 LGTPIR-RGFGG---------------LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----------------  292 (350)
Q Consensus       246 ~~~~~~-~~~~~---------------v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-----------------  292 (350)
                      +..... .|...               +..++|+|++++|++++.||.|++||+.+++...+.                 
T Consensus       318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (447)
T 3dw8_B          318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV  397 (447)
T ss_dssp             SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCE
T ss_pred             cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccc
Confidence            554433 33221               334999999999999999999999999988764322                 


Q ss_pred             ----------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          293 ----------------STSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       293 ----------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                                      .+...|..++|+|+|.+|++++.+...+|.
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~  443 (447)
T 3dw8_B          398 CASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQ  443 (447)
T ss_dssp             ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEE
T ss_pred             cccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeec
Confidence                            234568899999999999999876655553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-25  Score=216.85  Aligned_cols=189  Identities=9%  Similarity=0.113  Sum_probs=151.1

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|++++|+|++++||+|+.||.|+||+...  .+..  ....|...|.+++|+| |+.+++++.|++|++||+..+.. 
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~--~~~~--~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-   91 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ--VEVV--IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV-   91 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTT--CEEE--EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE-
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCC--cEEE--EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE-
Confidence            4599999999999999999999999999842  3322  2235788999999999 68888888999999999984432 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee----------
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----------  249 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~----------  249 (350)
                                              ...+. |. ..|++++|+|++++|++++.| |+|++||+++++...          
T Consensus        92 ------------------------~~~~~-~~-~~V~~v~~sp~g~~l~sgs~d-g~V~lwd~~~~~~~~~~i~~~~~~~  144 (902)
T 2oaj_A           92 ------------------------LTTVF-VP-GKITSIDTDASLDWMLIGLQN-GSMIVYDIDRDQLSSFKLDNLQKSS  144 (902)
T ss_dssp             ------------------------EEEEE-CS-SCEEEEECCTTCSEEEEEETT-SCEEEEETTTTEEEEEEECCHHHHH
T ss_pred             ------------------------EEEEc-CC-CCEEEEEECCCCCEEEEEcCC-CcEEEEECCCCccccceeccccccc
Confidence                                    22232 33 689999999999999999999 799999999876531          


Q ss_pred             --eeecCCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCceec-cccC------------------CCCeEEEEEcCCC
Q 018806          250 --IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP-WSST------------------SGFVTGATWDPEG  307 (350)
Q Consensus       250 --~~~~~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~------------------~~~v~~~~~s~~g  307 (350)
                        ...|.+.|.+++|+|+ +..|++++.|+.| +||+++++... +..|                  ...|.+++|+|+|
T Consensus       145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg  223 (902)
T 2oaj_A          145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS  223 (902)
T ss_dssp             TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred             cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence              2346789999999996 5788999999999 99999987642 3222                  4679999999999


Q ss_pred             CEEEEEE-CCCeEEEE
Q 018806          308 RMILLAF-AGSLTLGS  322 (350)
Q Consensus       308 ~~l~~~~-~~~~~~~~  322 (350)
                      ++|++++ ++.+.+|+
T Consensus       224 ~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          224 LHIITIHEDNSLVFWD  239 (902)
T ss_dssp             SEEEEEETTCCEEEEE
T ss_pred             CEEEEEECCCeEEEEE
Confidence            9999887 44444443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=1.3e-24  Score=194.95  Aligned_cols=240  Identities=16%  Similarity=0.287  Sum_probs=178.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec-CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      .+.++.|+||++ ++||+| .|++|+|||..+  ++....+. .+|...|++++|+|+|+.+++++.|+.|+|||+....
T Consensus       105 d~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~t--g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          105 DYYLNLVDWSSG-NVLAVA-LDNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             CTTCBCEEECTT-SEEEEE-ETTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cccceeEEECCC-CEEEEE-eCCEEEEEECCC--CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence            456788999975 577776 499999999964  55444332 3678889999999999999999999999999998654


Q ss_pred             CCceeecccccccce--------ecCCCCCceE---------EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE
Q 018806          178 NAASVRSGAASFLGA--------LSRGPGTRWT---------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW  240 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~--------~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw  240 (350)
                      ....+. +....+..        .+.+.++...         ....+.+|. ..+..+.|+|+++++++++.| |.+++|
T Consensus       181 ~~~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~-~~~~~~~~~~~g~~l~s~~~D-~~v~i~  257 (420)
T 4gga_A          181 RLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS-QEVCGLRWAPDGRHLASGGND-NLVNVW  257 (420)
T ss_dssp             EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEE
T ss_pred             EEEEEe-CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccc-cceeeeeecCCCCeeeeeecc-ccceEE
Confidence            433332 11112221        1222233333         234566776 689999999999999999999 699999


Q ss_pred             eCCCCCc-----eeeeecCCCeEEEEEcCCCC-EEEEE--ecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEE
Q 018806          241 DVAQGLG-----TPIRRGFGGLSILKWSPTGD-YFFAA--KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       241 d~~~~~~-----~~~~~~~~~v~~~~~sp~g~-~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  312 (350)
                      +..+++.     .....+...|.+++|+|++. .++++  +.|++|++||+.+++......+...+.++.|+|+++.+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS  337 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence            9988753     23445778999999999765 44443  5799999999999998766667778999999999999998


Q ss_pred             EE-CCCeEEEEEEeCCCCC--CCceeecccccceee
Q 018806          313 AF-AGSLTLGSIHFASKPP--SLDAHLLPVDLPDIV  345 (350)
Q Consensus       313 ~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~  345 (350)
                      ++ ..+..+..|++....+  .+.+|..+|....+.
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s  373 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS  373 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            76 3456677777765443  677899988877665

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.94  E-value=4.8e-25  Score=193.38  Aligned_cols=197  Identities=18%  Similarity=0.272  Sum_probs=152.7

Q ss_pred             ccCeeEEEEecC----CCEEEEEECCCeEEEEEccCCCCCceeEec----CCCCCCeeEEEEeeC----CCeEEEEecCC
Q 018806           99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILT----SDSQRDVKVLEWRPN----GGRSLSVGCKG  166 (350)
Q Consensus        99 ~~~V~~v~~sp~----g~~la~~s~d~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~----~~~l~~~~~d~  166 (350)
                      ..+|++++|+|+    ...+++++.++.|++|++..  +.....+.    ..|...|.+++|+|+    +..+++++.|+
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   95 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS--QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG   95 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG--GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC--CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence            345999999984    45666667777999999964  33322221    136788999999999    55788888899


Q ss_pred             cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEeCCCeEEEEeCCCC
Q 018806          167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG  245 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~g~i~iwd~~~~  245 (350)
                      .|++||+.....                         ...+.+|. ..|.+++|+| ++++|++++.| |.|++||++++
T Consensus        96 ~i~v~d~~~~~~-------------------------~~~~~~~~-~~i~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~  148 (366)
T 3k26_A           96 IIRIINPITMQC-------------------------IKHYVGHG-NAINELKFHPRDPNLLLSVSKD-HALRLWNIQTD  148 (366)
T ss_dssp             EEEEECTTTCCE-------------------------EEEEESCC-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTTT
T ss_pred             EEEEEEchhceE-------------------------eeeecCCC-CcEEEEEECCCCCCEEEEEeCC-CeEEEEEeecC
Confidence            999999984332                         33456665 7999999999 89999999999 79999999998


Q ss_pred             Cceeee----ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cc----------------------------
Q 018806          246 LGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----------------------------  292 (350)
Q Consensus       246 ~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~----------------------------  292 (350)
                      +.....    .|...|.+++|+|++++|++++.|+.|++||+++++... +.                            
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            776654    578899999999999999999999999999999876522 21                            


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       293 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .|...|.+++|+  +++|++++. +..+..|++..
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~-d~~i~~wd~~~  260 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSC-ENAIVCWKPGK  260 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECS-SSEEEEEEESS
T ss_pred             CCcceEEEEEEc--CCEEEEEec-CCEEEEEeCCC
Confidence            288899999999  778887763 23455555543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.8e-25  Score=196.67  Aligned_cols=216  Identities=14%  Similarity=0.232  Sum_probs=163.8

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCC---------------eeEEEEeeCCCeEEEEe
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRD---------------VKVLEWRPNGGRSLSVG  163 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~---------------v~~~~~sp~~~~l~~~~  163 (350)
                      ...|.+++|+|++++|++++.|+.|++|++..  ++....+ ..+...               +.+++|+|+ ..+++++
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  224 (425)
T 1r5m_A          149 RAPIVSVKWNKDGTHIISMDVENVTILWNVIS--GTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPG  224 (425)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTCCEEEEETTT--TEEEEEE-CCC---------------CCCBSCCEEEET-TEEEEEC
T ss_pred             CccEEEEEECCCCCEEEEEecCCeEEEEECCC--CcEEEEe-eccccCccceeeccccCCcceeeEEEEcCC-CEEEEEc
Confidence            34799999999999999999999999999954  5544444 344444               999999998 6788888


Q ss_pred             cCCcEEEEecCCCCCCceeecccccccceecCC----------CCCceEEee--------eccCCCCCceeeEEECCCCC
Q 018806          164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRG----------PGTRWTLVD--------FLRSQNGEQITALSWGPDGR  225 (350)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~~v~~~~~sp~g~  225 (350)
                      .++.|++||+........+. .....+..+.+.          .++.+.+++        .+.+|. ..|.+++|+|++ 
T Consensus       225 ~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~-  301 (425)
T 1r5m_A          225 PKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS-QSIVSASWVGDD-  301 (425)
T ss_dssp             GGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS-SCEEEEEEETTT-
T ss_pred             CCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC-ccEEEEEECCCC-
Confidence            89999999998654433332 222223333332          233444443        344554 689999999999 


Q ss_pred             eEEEEEeCCCeEEEEeCCCCCceee-eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc-----------------
Q 018806          226 YLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-----------------  287 (350)
Q Consensus       226 ~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~-----------------  287 (350)
                      .+++++.+ |.|++||+++++.... ..+...+.+++|+|++++|++++.|+.|++||+++++                 
T Consensus       302 ~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  380 (425)
T 1r5m_A          302 KVISCSMD-GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPL  380 (425)
T ss_dssp             EEEEEETT-SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CE
T ss_pred             EEEEEeCC-CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcc
Confidence            89999988 6999999998876654 4567899999999999999999999999999998877                 


Q ss_pred             ---e-eccccCCC--CeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 018806          288 ---S-EPWSSTSG--FVTGATWDPEGRMILLAF-AGSLTLGS  322 (350)
Q Consensus       288 ---~-~~~~~~~~--~v~~~~~s~~g~~l~~~~-~~~~~~~~  322 (350)
                         . ..+..|..  .|.+++|+|++++|++++ ++.+.+|.
T Consensus       381 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             cchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence               3 34556655  999999999999999887 44455444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.5e-24  Score=195.23  Aligned_cols=203  Identities=14%  Similarity=0.268  Sum_probs=152.3

Q ss_pred             ccCeeEEEEecCCC-EEEEEECCCeEEEEEccCCCCC-ce---eEecCCCCCCeeEEEEeeC-CCeEEEEecCCcEEEEe
Q 018806           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGK-DA---CILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWA  172 (350)
Q Consensus        99 ~~~V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~~~-~~---~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd  172 (350)
                      ...|++++|+|++. +|++++.||.|++|++...... ..   .....+|...|.+++|+|+ +..+++++.|+.|++||
T Consensus       181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            34789999999998 9999999999999999642211 11   1223478999999999994 44555666789999999


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCC-Cc-ee
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQG-LG-TP  249 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~-~~-~~  249 (350)
                      ++.......                      ...+..|. ..|.+++|+|+++ .|++++.| |.|++||++.. .. ..
T Consensus       261 ~~~~~~~~~----------------------~~~~~~~~-~~v~~i~~~p~~~~~l~tg~~d-g~v~vwd~~~~~~~~~~  316 (430)
T 2xyi_A          261 TRNNNTSKP----------------------SHTVDAHT-AEVNCLSFNPYSEFILATGSAD-KTVALWDLRNLKLKLHS  316 (430)
T ss_dssp             TTCSCSSSC----------------------SEEEECCS-SCEEEEEECSSCTTEEEEEETT-SEEEEEETTCTTSCSEE
T ss_pred             CCCCCCCcc----------------------eeEeecCC-CCeEEEEeCCCCCCEEEEEeCC-CeEEEEeCCCCCCCeEE
Confidence            985432111                      12234554 7899999999998 47788888 79999999984 33 34


Q ss_pred             eeecCCCeEEEEEcCCCC-EEEEEecCCeEEEEeCCCCc--------------e-eccccCCCCeEEEEEcCCCC-EEEE
Q 018806          250 IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWT--------------S-EPWSSTSGFVTGATWDPEGR-MILL  312 (350)
Q Consensus       250 ~~~~~~~v~~~~~sp~g~-~l~~~~~d~~v~iwd~~~~~--------------~-~~~~~~~~~v~~~~~s~~g~-~l~~  312 (350)
                      +..|...|.+++|+|+++ +|++++.|+.|+|||+....              . .....|...|.+++|+|+++ +|++
T Consensus       317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence            556889999999999985 68899999999999998722              2 33457888999999999999 5665


Q ss_pred             EECCCeEEEEEEeC
Q 018806          313 AFAGSLTLGSIHFA  326 (350)
Q Consensus       313 ~~~~~~~~~~~~~~  326 (350)
                      ++ .+..+..|++.
T Consensus       397 ~s-~dg~i~iw~~~  409 (430)
T 2xyi_A          397 VS-EDNIMQVWQMA  409 (430)
T ss_dssp             EE-TTSEEEEEEEC
T ss_pred             EE-CCCCEEEeEcc
Confidence            55 33455555554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=5e-25  Score=222.86  Aligned_cols=217  Identities=14%  Similarity=0.197  Sum_probs=169.5

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      +...|++++|+|+|++||+|+.||.|++||+..  +.....+ .+|...|.+++|+|+++.+++++.|+.|++||+..+.
T Consensus       614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~  690 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAET--GEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK  690 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccccEEEEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence            346799999999999999999999999999954  5655555 4899999999999999999999999999999998443


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC--CCCeEEEEEeCCCeEEEEeCCCCCcee-eeecC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGF  254 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~  254 (350)
                      .                         ...+.+|. ..|.+++|+|  ++..+++++.| |.|++||+.+++... +..|.
T Consensus       691 ~-------------------------~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~d-~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          691 L-------------------------VHTYDEHS-EQVNCCHFTNKSNHLLLATGSND-FFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             E-------------------------EEEEECCS-SCEEEEEECSSSSCCEEEEEETT-SCEEEEETTSSSEEEEECCCS
T ss_pred             e-------------------------EEEEcCCC-CcEEEEEEecCCCceEEEEEeCC-CeEEEEECCCcchhheecCCC
Confidence            2                         34456675 7999999999  45578888888 799999999988664 55688


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc-------------------------------------------
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-------------------------------------------  291 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~-------------------------------------------  291 (350)
                      ..|.+++|+|++++|++++.||.|++||+++++....                                           
T Consensus       744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~  823 (1249)
T 3sfz_A          744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL  823 (1249)
T ss_dssp             SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence            9999999999999999999999999999977643110                                           


Q ss_pred             -------------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC--CCCceeecccccceee
Q 018806          292 -------------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIV  345 (350)
Q Consensus       292 -------------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~  345 (350)
                                   ..|...+.+++|+|+++++++++.+ ..+..|++....  ..+.+|..+|....+.
T Consensus       824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~s  891 (1249)
T 3sfz_A          824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFS  891 (1249)
T ss_dssp             EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS-SCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC-CeEEEEEcCCCceeeecCCCccceEEEEEC
Confidence                         1455677888888888888877532 234444444332  2455677766655554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=1.4e-25  Score=202.21  Aligned_cols=221  Identities=14%  Similarity=0.116  Sum_probs=160.7

Q ss_pred             hhhhhhhhhccccccCCCCc-CCCCc--------------------------cCeeEEEEecCCCEEEEEECCCeEEEEE
Q 018806           75 STLHGIISHSIKPLLHPDHV-HLLPE--------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD  127 (350)
Q Consensus        75 ~~~~gh~~~~~~~~~~p~~~-~~~~~--------------------------~~V~~v~~sp~g~~la~~s~d~~i~iw~  127 (350)
                      ..+.||.+.+....+.|.+. .++.+                          ..+.+++|+|++++|++|+.||.|++||
T Consensus       158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd  237 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN  237 (435)
T ss_dssp             ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred             EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence            34568888888877877533 22221                          1467899999999999999999999999


Q ss_pred             ccCCCCCceeEecCCCCCCeeEEEEeeCCCeEE-EEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeee
Q 018806          128 YEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF  206 (350)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (350)
                      +.   ++....+ .+|...|.+++|+|++..++ +++.|+.|++||+........+.                      .
T Consensus       238 ~~---~~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~----------------------~  291 (435)
T 4e54_B          238 MD---GKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL----------------------Y  291 (435)
T ss_dssp             SS---SCBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS----------------------B
T ss_pred             cC---cceeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE----------------------E
Confidence            85   3333333 47999999999999987655 55668999999998544332221                      1


Q ss_pred             ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee-eecC------CCeEEEEEcCCCCEEEEEe------
Q 018806          207 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGF------GGLSILKWSPTGDYFFAAK------  273 (350)
Q Consensus       207 ~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~------~~v~~~~~sp~g~~l~~~~------  273 (350)
                      ..+|. ..|++++|+|+|++|++++.| |+|++||+.++..... ..|.      ..+..+.|+|++..++++.      
T Consensus       292 ~~~h~-~~v~~~~~spdg~~l~s~~~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  369 (435)
T 4e54_B          292 SLPHR-HPVNAACFSPDGARLLTTDQK-SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF  369 (435)
T ss_dssp             CCBCS-SCEEECCBCTTSSEEEEEESS-SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred             eeecc-ccccceeECCCCCeeEEEcCC-CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence            23454 689999999999999999999 6999999998865432 2222      1234567788777776664      


Q ss_pred             ------cCCeEEEEeCCCCceec-c-ccCCCCeEEE-EEcCCCCEEEEEECCCeEEEEEEe
Q 018806          274 ------FDGTFYLWETNTWTSEP-W-SSTSGFVTGA-TWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       274 ------~d~~v~iwd~~~~~~~~-~-~~~~~~v~~~-~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                            .++.|++||..+++... + ..|...|.++ +|+|+|++|++++++  .+..|++
T Consensus       370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~--~i~iW~~  428 (435)
T 4e54_B          370 KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY--HILIWSQ  428 (435)
T ss_dssp             CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS--EEEECCC
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC--cEEEEEC
Confidence                  24579999999998743 2 3677788887 699999999987654  3444443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=1.3e-24  Score=193.83  Aligned_cols=207  Identities=17%  Similarity=0.209  Sum_probs=159.0

Q ss_pred             CeeEEEEecCCCEEE-EEECCCeEEEEEccCCCCC-ceeEecCCCCCCeeEEEEee-CCCeEEEEecCCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGK-DACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la-~~s~d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ....++++|+...++ +++.||.|+||++...... .......+|.+.|.+++|+| ++..+++++.|+.|++||+...+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            355688888875444 4788999999998532110 11222357999999999999 87888888889999999998554


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC-CeEEEEEeCCCeEEEEeCCCCCceeee---ec
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPIR---RG  253 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~~~~~~~---~~  253 (350)
                      .......                  ....+.+|. ..|.+++|+|++ ..|++++.| |+|++||+++++.....   .|
T Consensus       116 ~~~~~~~------------------~~~~~~~h~-~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A          116 LVLPLRE------------------PVITLEGHT-KRVGIVAWHPTAQNVLLSAGCD-NVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             CSSCBCS------------------CSEEEECCS-SCEEEEEECSSBTTEEEEEETT-SCEEEEETTTTEEEEEECTTTC
T ss_pred             CccccCC------------------ceEEecCCC-CeEEEEEECcCCCCEEEEEcCC-CEEEEEECCCCCccEEEecCCC
Confidence            3221111                  133466775 799999999998 688999988 79999999998776544   47


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-c-ccCCCC-eEEEEEcCCCCEEEEEE--CCCeEEEEEEeCC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W-SSTSGF-VTGATWDPEGRMILLAF--AGSLTLGSIHFAS  327 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~-~~~~~~-v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~  327 (350)
                      ...+.+++|+|++++|++++.|+.|++||+++++... + ..|.+. +..++|+|+|++|+++.  ..+..+..|++..
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence            8899999999999999999999999999999988743 4 466655 89999999999998874  3445666666654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=9.1e-25  Score=190.09  Aligned_cols=216  Identities=8%  Similarity=0.019  Sum_probs=159.4

Q ss_pred             ccCeeEEEEecCCC-EEEEEECCCeEEEEEc-cCCCCCceeEecCC--CCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDY-EDSEGKDACILTSD--SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus        99 ~~~V~~v~~sp~g~-~la~~s~d~~i~iw~~-~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      ...|.+++|+|+++ +|++++.||.|++|++ ..  +. ...+ .+  |...|.+++|+| ++.+++++.|+.|++||+.
T Consensus        56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~-~~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~  130 (342)
T 1yfq_A           56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS--PS-FQAL-TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS--SS-EEEC-BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred             CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC--Cc-eEec-cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence            44699999999999 9999999999999998 64  22 2333 46  999999999999 8999999999999999987


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC-CCce---ee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGT---PI  250 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~-~~~~---~~  250 (350)
                      ...........                .....+. | ...+.+++|+|++  +++++.+ |.|++||+++ +...   ..
T Consensus       131 ~~~~~~~~~~~----------------~~~~~~~-~-~~~v~~~~~~~~~--l~~~~~d-~~i~i~d~~~~~~~~~~~~~  189 (342)
T 1yfq_A          131 NYGDGVIAVKN----------------LNSNNTK-V-KNKIFTMDTNSSR--LIVGMNN-SQVQWFRLPLCEDDNGTIEE  189 (342)
T ss_dssp             HHTTBCEEEEE----------------SCSSSSS-S-CCCEEEEEECSSE--EEEEEST-TEEEEEESSCCTTCCCEEEE
T ss_pred             ccccccccccC----------------CeeeEEe-e-CCceEEEEecCCc--EEEEeCC-CeEEEEECCccccccceeee
Confidence            31000000000                0011122 3 3689999999987  8888888 6999999998 5432   23


Q ss_pred             eecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCC------ce-eccccCCC---------CeEEEEEcCCCCEEEEE
Q 018806          251 RRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW------TS-EPWSSTSG---------FVTGATWDPEGRMILLA  313 (350)
Q Consensus       251 ~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~------~~-~~~~~~~~---------~v~~~~~s~~g~~l~~~  313 (350)
                      ..+...+.+++|+| +++++++++.||.|++|+++..      +. ..+..|..         .|.+++|+|++++|+++
T Consensus       190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  269 (342)
T 1yfq_A          190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence            34678899999999 9999999999999999999876      33 33445543         89999999999999988


Q ss_pred             ECCCeEEEEEEeCCCC--CCCcee-eccccc
Q 018806          314 FAGSLTLGSIHFASKP--PSLDAH-LLPVDL  341 (350)
Q Consensus       314 ~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~  341 (350)
                      +.+ ..+..|++....  ..+.+| ..+|..
T Consensus       270 ~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~  299 (342)
T 1yfq_A          270 GSD-GIISCWNLQTRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             ETT-SCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred             cCC-ceEEEEcCccHhHhhhhhcccCCCceE
Confidence            733 245555554332  245555 655543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=3.8e-24  Score=194.28  Aligned_cols=236  Identities=13%  Similarity=0.171  Sum_probs=174.7

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee--CCCeEEEEecCCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ...|++++|+|++ +|++|+.||+|++||+..  ++....+ .+|...|.+++|++  ++..+++++.|+.|++||+...
T Consensus       162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~  237 (464)
T 3v7d_B          162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--GCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  237 (464)
T ss_dssp             SSCEEEEEECSTT-EEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred             CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--CcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence            4479999999988 899999999999999954  5555554 57999999999995  6567888888999999999855


Q ss_pred             CCCcee----------------------ecccccccc--------eecCCCCCceEEe--------eeccCCCCCceeeE
Q 018806          177 GNAASV----------------------RSGAASFLG--------ALSRGPGTRWTLV--------DFLRSQNGEQITAL  218 (350)
Q Consensus       177 ~~~~~~----------------------~~~~~~~~~--------~~~~~~~~~~~~~--------~~~~~~~~~~v~~~  218 (350)
                      ......                      ..+....+.        -++.+.++.+.++        ..+.+|. ..|.++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~  316 (464)
T 3v7d_B          238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYST  316 (464)
T ss_dssp             CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEE
T ss_pred             cccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCEEEE
Confidence            432111                      111111111        1223334444443        3556675 799999


Q ss_pred             EECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCC
Q 018806          219 SWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF  297 (350)
Q Consensus       219 ~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  297 (350)
                      +|+|+++++++++.| |.|++||+++++... +..|...+.+++|+  +++|++++.||.|++||+++++......+...
T Consensus       317 ~~~~~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  393 (464)
T 3v7d_B          317 IYDHERKRCISASMD-TTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNL  393 (464)
T ss_dssp             EEETTTTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEcCCCCEEEEEeCC-CcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCC
Confidence            999999999999999 699999999987665 44678899999997  57999999999999999999887655567778


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC---CCceeeccccccee
Q 018806          298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAHLLPVDLPDI  344 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~  344 (350)
                      +..++|++++++|++++++  .+..|++.....   .+..|..+|....+
T Consensus       394 ~~~~~~~~~~~~l~~~~dg--~i~iwd~~~g~~~~~~~~~~~~~v~~v~~  441 (464)
T 3v7d_B          394 SAITTFYVSDNILVSGSEN--QFNIYNLRSGKLVHANILKDADQIWSVNF  441 (464)
T ss_dssp             CCEEEEEECSSEEEEEETT--EEEEEETTTCCEEESCTTTTCSEEEEEEE
T ss_pred             ccEEEEEeCCCEEEEecCC--eEEEEECCCCcEEehhhccCCCcEEEEEe
Confidence            8889999999999988854  455666554332   23455555544433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=4.8e-24  Score=200.00  Aligned_cols=221  Identities=13%  Similarity=0.141  Sum_probs=169.5

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCC----CceeEecCCCCCC-eeEEEEee--CCCeEEEEecCCcEEE
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG----KDACILTSDSQRD-VKVLEWRP--NGGRSLSVGCKGGICI  170 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~----~~~~~~~~~~~~~-v~~~~~sp--~~~~l~~~~~d~~v~i  170 (350)
                      +...|.+++|+|+|++||+++ ++.|++|++..  +    .....+ .+|... |.+++|+|  +++.+++++.|+.|++
T Consensus        17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~--~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDD--GDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCS--SCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             ccCceeEEEECCCCCEEEEec-CCeEEEEECCC--CCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            355799999999999999988 88999999964  4    444444 589999 99999999  9888988888999999


Q ss_pred             EecCCCC-------CCceeecccccccceecCCCCCceE--------------------EeeeccCCCCCceeeEEECCC
Q 018806          171 WAPSYPG-------NAASVRSGAASFLGALSRGPGTRWT--------------------LVDFLRSQNGEQITALSWGPD  223 (350)
Q Consensus       171 wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~~~~sp~  223 (350)
                      ||+..+.       ............+..+.+++++...                    ....+.+|. ..|.+++|+|+
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~v~~~~~~~~  171 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-QRINACHLKQS  171 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS-SCEEEEEECSS
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCC-ccEEEEEECCC
Confidence            9996331       1111111122333444444443321                    233456675 79999999999


Q ss_pred             CC-eEEEEEeCCCeEEEEeCCCCCceee-eecCC---CeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCceeccc-----
Q 018806          224 GR-YLASASYESSSFTIWDVAQGLGTPI-RRGFG---GLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS-----  292 (350)
Q Consensus       224 g~-~l~~~~~d~g~i~iwd~~~~~~~~~-~~~~~---~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~~~~-----  292 (350)
                      ++ .+++++.| |.|++||+.+++.... ..|..   .+.+++|+|+ +++|++++.|+.|++||+++++.....     
T Consensus       172 ~~~~l~~~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  250 (615)
T 1pgu_A          172 RPMRSMTVGDD-GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE  250 (615)
T ss_dssp             SSCEEEEEETT-TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred             CCcEEEEEeCC-CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence            98 78888888 7999999998876554 44667   8999999999 999999999999999999999875443     


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       293 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      .|...|.+++|+ ++++|++++.+ ..+..|++.
T Consensus       251 ~~~~~v~~~~~~-~~~~l~~~~~d-~~i~~wd~~  282 (615)
T 1pgu_A          251 PVQGGIFALSWL-DSQKFATVGAD-ATIRVWDVT  282 (615)
T ss_dssp             CCCSCEEEEEES-SSSEEEEEETT-SEEEEEETT
T ss_pred             ccCCceEEEEEc-CCCEEEEEcCC-CcEEEEECC
Confidence            889999999999 99999988743 245555554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.5e-25  Score=194.17  Aligned_cols=194  Identities=8%  Similarity=0.055  Sum_probs=148.6

Q ss_pred             EecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccc
Q 018806          107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA  186 (350)
Q Consensus       107 ~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  186 (350)
                      +.+++++|++|+.||.|++||+..  ++....+.   ...|.++.|+|+   +++++.|++|++|+.........+... 
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~--~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~-  114 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKD--SKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN-  114 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESS--SSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC-
T ss_pred             hcCCCCEEEEECCCCcEEEEECCC--CcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc-
Confidence            345788999999999999999964  55555543   456888889988   888888999999988621100000000 


Q ss_pred             ccccceecCCCCCceEEeeecc-CCCCCceeeEEECC--CCCeEEEEEeCCCeEEEEeCCCCCceeee--ecCCCeEEEE
Q 018806          187 ASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK  261 (350)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--~~~~~v~~~~  261 (350)
                                     .+...+. +|. ..|.+++|+|  +++++++++.| |+|++||+++++.....  .+...+.+++
T Consensus       115 ---------------~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~~i~~~~  177 (343)
T 3lrv_A          115 ---------------KVLREIEVDSA-NEIIYMYGHNEVNTEYFIWADNR-GTIGFQSYEDDSQYIVHSAKSDVEYSSGV  177 (343)
T ss_dssp             ---------------CEEEEEECCCS-SCEEEEECCC---CCEEEEEETT-CCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred             ---------------ceeEEeecCCC-CCEEEEEcCCCCCCCEEEEEeCC-CcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence                           0112222 343 6899999999  99999999999 69999999998875544  3445799999


Q ss_pred             EcCCCCEEEEEecCCeEEEEeCCCCcee--cccc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          262 WSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       262 ~sp~g~~l~~~~~d~~v~iwd~~~~~~~--~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      |+|+|++|++|+.|+.|++||+++++..  .+.. |...|++++|+|+|++|++++++  .+..|++...
T Consensus       178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~--~v~iwd~~~~  245 (343)
T 3lrv_A          178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ--TVVCFDLRKD  245 (343)
T ss_dssp             ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS--BEEEEETTSS
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC--eEEEEEcCCC
Confidence            9999999999999999999999998875  5666 89999999999999999999865  4555555443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.2e-23  Score=188.22  Aligned_cols=216  Identities=14%  Similarity=0.141  Sum_probs=168.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCC---eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-C--CcEEEEec
Q 018806          100 VDLQGVSWHQHKHIVAFISGST---QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAP  173 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~---~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~  173 (350)
                      ..|.+++|||||++||+++.++   .|++||+..  ++.. .+ ..|...+.+++|+|||+.+++++. +  ..|++||+
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t--g~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~  254 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  254 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence            4799999999999999999875   999999964  4433 33 357788999999999988885554 4  45899998


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIR  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~  251 (350)
                      .....                          ..+..+. ..+.+++|+|||++|++++.++|  .|++||+.+++...+.
T Consensus       255 ~~~~~--------------------------~~l~~~~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~  307 (415)
T 2hqs_A          255 ASGQI--------------------------RQVTDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT  307 (415)
T ss_dssp             TTCCE--------------------------EECCCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred             CCCCE--------------------------EeCcCCC-CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe
Confidence            74321                          2234443 68899999999999998886534  6888899988766666


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecC---CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEEEeC
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFA  326 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~~~~~~~~~  326 (350)
                      .+...+.+++|+|+|++|++++.+   ..|++||+.+++...+..+. .+.+++|+|||++|++++..  ...++.|++.
T Consensus       308 ~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          308 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            666788899999999999888764   58999999999887666654 89999999999999988733  3478888876


Q ss_pred             CCCC-CCceeecccccceeecc
Q 018806          327 SKPP-SLDAHLLPVDLPDIVSL  347 (350)
Q Consensus       327 ~~~~-~~~~~~~~v~~~~~~~~  347 (350)
                      .... .+..|...|..+.+.+.
T Consensus       387 g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          387 GRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             SCCEEECCCSSSEEEEEEECCC
T ss_pred             CCcEEEeeCCCCCCcCCccccc
Confidence            5433 66777777877777653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=5.5e-24  Score=206.25  Aligned_cols=218  Identities=16%  Similarity=0.237  Sum_probs=169.4

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+|++++|++++.||.|++|++..  ++....+ .+|...|.+++|+|+++.+++++.|+.|++||+.....
T Consensus        55 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (814)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred             CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence            34699999999999999999999999999954  5555555 47999999999999998999999999999999985533


Q ss_pred             CceeecccccccceecC-----------CCCCceEEeee--------ccCCCCCceeeEEECC--CCCeEEEEEeCCCeE
Q 018806          179 AASVRSGAASFLGALSR-----------GPGTRWTLVDF--------LRSQNGEQITALSWGP--DGRYLASASYESSSF  237 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~~v~~~~~sp--~g~~l~~~~~d~g~i  237 (350)
                      ...........+..+.+           +.++.+.+++.        +..++...+..++|+|  ++++|++++.+ |.|
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~i  210 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-LTI  210 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT-SEE
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC-CEE
Confidence            32222222222222222           33444555542        2333336899999999  99999999999 799


Q ss_pred             EEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCC--EEEEE
Q 018806          238 TIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--MILLA  313 (350)
Q Consensus       238 ~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~--~l~~~  313 (350)
                      ++||+.+++... +..|...+.+++|+|++++|++++.||.|++||+.+++. ..+..+...+.+++|+|+|+  +++++
T Consensus       211 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  290 (814)
T 3mkq_A          211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG  290 (814)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence            999999887655 445788999999999999999999999999999999887 44567788999999999998  46655


Q ss_pred             ECCCeEE
Q 018806          314 FAGSLTL  320 (350)
Q Consensus       314 ~~~~~~~  320 (350)
                      .++...+
T Consensus       291 ~~~~~~~  297 (814)
T 3mkq_A          291 FDNGFTV  297 (814)
T ss_dssp             ETTEEEE
T ss_pred             eCCCEEE
Confidence            5554433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-24  Score=208.59  Aligned_cols=200  Identities=18%  Similarity=0.314  Sum_probs=159.4

Q ss_pred             ccCeeEEEEecC--CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecC
Q 018806           99 EVDLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus        99 ~~~V~~v~~sp~--g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~  174 (350)
                      ...|++++|+|+  +++|++|+.||.|++||+........... .+|...|.+++|+|+  +..+++++.|+.|++||+.
T Consensus        53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            346999999988  99999999999999999975221133333 579999999999999  8899999999999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-------------CCCeEEEEEeCCCeEEEEe
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-------------DGRYLASASYESSSFTIWD  241 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------------~g~~l~~~~~d~g~i~iwd  241 (350)
                      .......                       ..+.+|. ..|.+++|+|             +++.+++++.| |+|++||
T Consensus       132 ~~~~~~~-----------------------~~~~~~~-~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-g~I~iwd  186 (753)
T 3jro_A          132 ENGTTSP-----------------------IIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-NLVKIWK  186 (753)
T ss_dssp             SSSCCCC-----------------------EEEECCS-SCEEEEEECCCC---------CGGGCCEEEEETT-SCEEEEE
T ss_pred             cCCCcce-----------------------eEeecCC-CceEEEEecCcccccccccccCCCCCEEEEEECC-CeEEEEe
Confidence            5432211                       1234554 7999999999             58999999999 7999999


Q ss_pred             CCCCCce-----eeeecCCCeEEEEEcCC---CCEEEEEecCCeEEEEeCCCCce------eccccCCCCeEEEEEcCCC
Q 018806          242 VAQGLGT-----PIRRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPEG  307 (350)
Q Consensus       242 ~~~~~~~-----~~~~~~~~v~~~~~sp~---g~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~v~~~~~s~~g  307 (350)
                      ++++...     .+..|...|.+++|+|+   +++|++++.||.|++||+++++.      .....|...|++++|+|+|
T Consensus       187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg  266 (753)
T 3jro_A          187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  266 (753)
T ss_dssp             EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT
T ss_pred             ccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC
Confidence            9887432     24457889999999999   89999999999999999998742      2344678899999999999


Q ss_pred             CEEEEEE-CCCeEEEEEE
Q 018806          308 RMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       308 ~~l~~~~-~~~~~~~~~~  324 (350)
                      ++|++++ ++.+.+|.+.
T Consensus       267 ~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          267 NVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             CCEEEECSSSCEECCBCC
T ss_pred             CEEEEEcCCCEEEEEecC
Confidence            9999886 4444444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=4.5e-24  Score=215.94  Aligned_cols=218  Identities=14%  Similarity=0.179  Sum_probs=161.8

Q ss_pred             hhhhhhhhhccccccCCCCcCCCC------------------------ccCeeEEEEecCCCEEEEEECCCeEEEEEccC
Q 018806           75 STLHGIISHSIKPLLHPDHVHLLP------------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED  130 (350)
Q Consensus        75 ~~~~gh~~~~~~~~~~p~~~~~~~------------------------~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~  130 (350)
                      ..+.||.+.+....+.|+...++.                        ...|.+++|+|+|++||+++.|+.|+|||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            356678887777777776443332                        22699999999999999999999999999964


Q ss_pred             CCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeecc
Q 018806          131 SEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR  208 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (350)
                        ++....+ .+|...|.+++|+|+  +..+++++.|+.|++||+..+...                         ..+.
T Consensus       689 --~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-------------------------~~~~  740 (1249)
T 3sfz_A          689 --GKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR-------------------------NTMF  740 (1249)
T ss_dssp             --CCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE-------------------------EEEC
T ss_pred             --CceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh-------------------------heec
Confidence              6655555 479999999999995  335666777899999999854322                         2233


Q ss_pred             CCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--------------------------------------------
Q 018806          209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--------------------------------------------  244 (350)
Q Consensus       209 ~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--------------------------------------------  244 (350)
                      +|. ..|.+++|+|++++|++++.| |+|++||+.+                                            
T Consensus       741 ~h~-~~v~~~~~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  818 (1249)
T 3sfz_A          741 GHT-NSVNHCRFSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK  818 (1249)
T ss_dssp             CCS-SCEEEEEECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred             CCC-CCEEEEEEecCCCEEEEEECC-CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence            443 455666666666666655555 4666665543                                            


Q ss_pred             ----------CCceeee--ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEE
Q 018806          245 ----------GLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       245 ----------~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~  311 (350)
                                +......  .|...+.+++|+|+++++++++.|+.|++||+.+++. ..+..|...|.+++|+|+|++|+
T Consensus       819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE
Confidence                      3322211  4567899999999999999999999999999999877 45678999999999999999999


Q ss_pred             EEE-CCCeEEEE
Q 018806          312 LAF-AGSLTLGS  322 (350)
Q Consensus       312 ~~~-~~~~~~~~  322 (350)
                      +++ ++.+.+|.
T Consensus       899 s~s~dg~v~vw~  910 (1249)
T 3sfz_A          899 TASDDQTIRVWE  910 (1249)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEeCCCeEEEEE
Confidence            887 44455554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=5.9e-24  Score=186.37  Aligned_cols=216  Identities=11%  Similarity=0.115  Sum_probs=148.2

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEE-ecCCcEEEEecCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPG  177 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~  177 (350)
                      ...|++++|+|||++||+|+.++ ++||+.+.  .......   +...+..+++.++++.++.+ +.|++|++||...+.
T Consensus        19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~   92 (355)
T 3vu4_A           19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP--VAHIMSQ---EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ   92 (355)
T ss_dssp             CCCCCEEEECTTSSEEEEECSSE-EEEEEETT--EEEEEEE---ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred             CCceEEEEECCCCCEEEEEcCCE-EEEEecCC--cceeeee---ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence            45699999999999999987775 78999853  3333322   22258888999887777554 446999999998655


Q ss_pred             CCceeecccccccceecCC-------CCCceEEeeeccC-CC----CCceeeEEECCCCCeEEEE--EeCCCeEEEEeCC
Q 018806          178 NAASVRSGAASFLGALSRG-------PGTRWTLVDFLRS-QN----GEQITALSWGPDGRYLASA--SYESSSFTIWDVA  243 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~----~~~v~~~~~sp~g~~l~~~--~~d~g~i~iwd~~  243 (350)
                      ....+...  ..+..+.+.       .++.+.+++.-.. ..    ......+++++  ..++++  +.+ |.|++||++
T Consensus        93 ~~~~~~~~--~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~-g~v~iwd~~  167 (355)
T 3vu4_A           93 DVSRIKVD--APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNL-GQIHITKLQ  167 (355)
T ss_dssp             EEEEEECS--SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCT-TCEEEEECC
T ss_pred             EEEEEECC--CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcC-cEEEEEECC
Confidence            44333211  122222222       2334444442222 00    00223345666  566664  556 799999999


Q ss_pred             CCC-----------------ceeeeecCCCeEEEEEcCCCCEEEEEecCCe-EEEEeCCCCceec-cc-c-CCCCeEEEE
Q 018806          244 QGL-----------------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGT-FYLWETNTWTSEP-WS-S-TSGFVTGAT  302 (350)
Q Consensus       244 ~~~-----------------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~-v~iwd~~~~~~~~-~~-~-~~~~v~~~~  302 (350)
                      ++.                 ...+..|...|.+++|+|+|++|++++.|++ |++||+++++... +. + |...|.+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~  247 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMK  247 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEE
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEE
Confidence            865                 4456678899999999999999999999998 9999999998744 44 3 899999999


Q ss_pred             EcCCCCEEEEEECCCeEEEEEEeC
Q 018806          303 WDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       303 ~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      |+|+|++|++++.+ ..+..|++.
T Consensus       248 ~s~~~~~l~s~s~d-~~v~iw~~~  270 (355)
T 3vu4_A          248 WSTDGSKLAVVSDK-WTLHVFEIF  270 (355)
T ss_dssp             ECTTSCEEEEEETT-CEEEEEESS
T ss_pred             ECCCCCEEEEEECC-CEEEEEEcc
Confidence            99999999988743 245555554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6e-24  Score=192.33  Aligned_cols=198  Identities=11%  Similarity=0.029  Sum_probs=152.4

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCC---ceeEec------------------------------------
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK---DACILT------------------------------------  140 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~---~~~~~~------------------------------------  140 (350)
                      .++.+++|+|+|++|+++ .++.|++||+.+  ++   .+..+.                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQS--PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEET--TTEEEEEEEEECCC---------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCC--CCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            358999999999966654 678999999865  43   222221                                    


Q ss_pred             -----------------CCCCCCeeEEEEeeCCCeE-EEEecCCcEEEEecC--CCCCCceeecccccccceecCCCCCc
Q 018806          141 -----------------SDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPS--YPGNAASVRSGAASFLGALSRGPGTR  200 (350)
Q Consensus       141 -----------------~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (350)
                                       .+|.+.|.+++|+|+++.| ++++.|+.|++||+.  .......+..                
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~----------------  145 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR----------------  145 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------------
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec----------------
Confidence                             0234479999999998886 555568999999998  3332222110                


Q ss_pred             eEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce-----eeeecCCCeEEEEEcCC---CCEEEEE
Q 018806          201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGFGGLSILKWSPT---GDYFFAA  272 (350)
Q Consensus       201 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~---g~~l~~~  272 (350)
                             ..+ ...|.+++|+|++++|++++.+ |.|++|++.++...     .+..|...|.+++|+|+   +++|+++
T Consensus       146 -------~~~-~~~v~~~~~sp~~~~l~~~~~~-g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  216 (450)
T 2vdu_B          146 -------FCF-SKRPNAISIAEDDTTVIIADKF-GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS  216 (450)
T ss_dssp             -------EEC-SSCEEEEEECTTSSEEEEEETT-SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE
T ss_pred             -------ccC-CCCceEEEEcCCCCEEEEEeCC-CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE
Confidence                   123 3689999999999999999998 79999999887654     45568899999999999   9999999


Q ss_pred             ecCCeEEEEeCCCCcee-c-cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          273 KFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       273 ~~d~~v~iwd~~~~~~~-~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +.|+.|++||+++++.. . +.+|...|.+++|+ +|++|++++.+ ..+..|++..
T Consensus       217 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d-~~v~vwd~~~  271 (450)
T 2vdu_B          217 DRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD-DKIFAWDWKT  271 (450)
T ss_dssp             ETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS-SEEEEEETTT
T ss_pred             cCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC-CeEEEEECCC
Confidence            99999999999988864 3 45799999999999 99999988733 3555666544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=3.3e-23  Score=181.64  Aligned_cols=216  Identities=14%  Similarity=0.111  Sum_probs=154.5

Q ss_pred             CeeEEEEecCCCEEE-EEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC-CC
Q 018806          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la-~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~  178 (350)
                      .+..+++.++++.++ +++.|++|+|||...  ++....+  .+...|.+++|+++   .++++.++.|++||+... ..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~--~~~~~~~--~~~~~v~~v~~~~~---~~~~~~~~~i~i~d~~~~~~~  132 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK--KQDVSRI--KVDAPVKDLFLSRE---FIVVSYGDVISVFKFGNPWKR  132 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTT--TEEEEEE--ECSSCEEEEEECSS---EEEEEETTEEEEEESSTTCCB
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCC--CcEEEEE--ECCCceEEEEEcCC---EEEEEEcCEEEEEECCCCcee
Confidence            467788999988885 566789999999854  5555555  36678999999876   234456889999999865 33


Q ss_pred             Cceeecc----cccccceec---CCCCCceEE------------------------eeeccCCCCCceeeEEECCCCCeE
Q 018806          179 AASVRSG----AASFLGALS---RGPGTRWTL------------------------VDFLRSQNGEQITALSWGPDGRYL  227 (350)
Q Consensus       179 ~~~~~~~----~~~~~~~~~---~~~~~~~~~------------------------~~~~~~~~~~~v~~~~~sp~g~~l  227 (350)
                      ...+...    ...+ ..++   ...++.+.+                        ...+.+|. ..|.+++|+|+|++|
T Consensus       133 ~~~~~~~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~-~~v~~~~~s~~g~~l  210 (355)
T 3vu4_A          133 ITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT-NPIKMVRLNRKSDMV  210 (355)
T ss_dssp             SSCCEEEEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS-SCEEEEEECTTSSEE
T ss_pred             eEEeccCCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC-CceEEEEECCCCCEE
Confidence            3333220    0000 1111   233344333                        34466776 799999999999999


Q ss_pred             EEEEeCCCe-EEEEeCCCCCceeeee---cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec---cc--------
Q 018806          228 ASASYESSS-FTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS--------  292 (350)
Q Consensus       228 ~~~~~d~g~-i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~---~~--------  292 (350)
                      ++++.| |+ |++||+++++......   |...|.+++|+|+|++|++++.|++|++||++.+....   +.        
T Consensus       211 ~s~s~d-~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  289 (355)
T 3vu4_A          211 ATCSQD-GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYF  289 (355)
T ss_dssp             EEEETT-CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred             EEEeCC-CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccc
Confidence            999999 68 9999999998776554   78899999999999999999999999999998764211   10        


Q ss_pred             -------------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          293 -------------STSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       293 -------------~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                                   ........++|+++|++|++++ ++...+|.+...
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                         0112246789999999999887 444555555443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.5e-25  Score=199.56  Aligned_cols=200  Identities=7%  Similarity=0.092  Sum_probs=150.0

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCC-CCCceeEe--------c-CC--CCCCeeEEE--EeeCCCeEEEEec
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-EGKDACIL--------T-SD--SQRDVKVLE--WRPNGGRSLSVGC  164 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~-~~~~~~~~--------~-~~--~~~~v~~~~--~sp~~~~l~~~~~  164 (350)
                      ...|++++|+|++++|++++.|+.|++||++.. .++.....        . ..  +...+.++.  +++++..+++++.
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            346999999999999999999999999999521 12221111        0 01  556677777  5577788888888


Q ss_pred             CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccC--CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC
Q 018806          165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~  242 (350)
                      |+.|++||+.....                         ...+.+  |. ..|++++|+|++++|++++.| |+|++||+
T Consensus       191 d~~i~iwd~~~~~~-------------------------~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~  243 (437)
T 3gre_A          191 LSRVIIFDIRTLER-------------------------LQIIENSPRH-GAVSSICIDEECCVLILGTTR-GIIDIWDI  243 (437)
T ss_dssp             TSEEEEEETTTCCE-------------------------EEEEECCGGG-CCEEEEEECTTSCEEEEEETT-SCEEEEET
T ss_pred             CCeEEEEeCCCCee-------------------------eEEEccCCCC-CceEEEEECCCCCEEEEEcCC-CeEEEEEc
Confidence            99999999984332                         333444  44 699999999999999999999 79999999


Q ss_pred             CCCCceeee--ecCCCeEEEEEc----CCCCEEEEEecCCeEEEEeCCCCceec-cc-----------------------
Q 018806          243 AQGLGTPIR--RGFGGLSILKWS----PTGDYFFAAKFDGTFYLWETNTWTSEP-WS-----------------------  292 (350)
Q Consensus       243 ~~~~~~~~~--~~~~~v~~~~~s----p~g~~l~~~~~d~~v~iwd~~~~~~~~-~~-----------------------  292 (350)
                      ++++.....  .+...|.+++|+    |++++|++++.|+.|++||+++++... +.                       
T Consensus       244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  323 (437)
T 3gre_A          244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF  323 (437)
T ss_dssp             TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred             CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence            998776543  566789999665    568899999999999999999887522 11                       


Q ss_pred             -c--CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          293 -S--TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       293 -~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                       +  |...|++++|+ ++++|++++. +..+..|++..
T Consensus       324 ~~~~~~~~v~~l~~~-~~~~l~s~~~-d~~i~~wd~~~  359 (437)
T 3gre_A          324 CGIRSLNALSTISVS-NDKILLTDEA-TSSIVMFSLNE  359 (437)
T ss_dssp             CCCCSGGGGCCEEEE-TTEEEEEEGG-GTEEEEEETTC
T ss_pred             cccccCCceEEEEEC-CceEEEecCC-CCeEEEEECCC
Confidence             1  55678999999 7788887762 23455555543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=7.2e-24  Score=192.46  Aligned_cols=207  Identities=15%  Similarity=0.238  Sum_probs=159.9

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      +.++.+  ++++|++|+.||.|++||+..  ++....+ .+|.+.|.+++|+|++ .+++++.|++|++||+..+.    
T Consensus       125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~--~~~~~~~-~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~----  194 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGADDKMIRVYDSIN--KKFLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC----  194 (464)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE----
T ss_pred             EEEEEE--CCCEEEEEcCCCcEEEEECCC--CcEEEEE-eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc----
Confidence            466665  567999999999999999954  5555555 4899999999999985 88888889999999998432    


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC--CCCCeEEEEEeCCCeEEEEeCCCCCce-----------
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRYLASASYESSSFTIWDVAQGLGT-----------  248 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~~~~~d~g~i~iwd~~~~~~~-----------  248 (350)
                                           ....+.+|. ..|.+++|+  ++++++++++.| |+|++||++++...           
T Consensus       195 ---------------------~~~~~~~h~-~~v~~l~~~~~~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          195 ---------------------CTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRD-NTLHVWKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             ---------------------EEEEECCCS-SCEEEEEEEESSSCEEEEEEETT-SCEEEEECCCCCCC------CCSSE
T ss_pred             ---------------------EEEEECCCC-CccEEEEEecCCCCCEEEEEcCC-CcEEEeeCCCCcccccccccCCcce
Confidence                                 234466675 799999998  578899999999 69999999877532           


Q ss_pred             -------------eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          249 -------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       249 -------------~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                                   ....|...+.++  +++++++++++.|+.|++||+++++. ..+..|...|.+++|+|++++|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence                         233455566655  67899999999999999999999887 45667899999999999999999887


Q ss_pred             CCCeEEEEEEeCCC--CCCCceeeccccccee
Q 018806          315 AGSLTLGSIHFASK--PPSLDAHLLPVDLPDI  344 (350)
Q Consensus       315 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~  344 (350)
                      .+. .+..|++...  ...+.+|..+|....+
T Consensus       330 ~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          330 MDT-TIRIWDLENGELMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             TTS-CEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCC-cEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence            332 3445554432  2255677777665443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.92  E-value=4.3e-24  Score=187.90  Aligned_cols=162  Identities=12%  Similarity=0.108  Sum_probs=127.9

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCcee-EecCCCCCCeeEEEEeeCCCeEEEEecCC----cEEEEec
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCKG----GICIWAP  173 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~  173 (350)
                      ..+|++++|+|||++|++++.++ +.+|+...  +.... .....|...|.+++|+|+++.+++++.++    .+++|++
T Consensus       176 ~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~--~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~  252 (365)
T 4h5i_A          176 RGEVKDLHFSTDGKVVAYITGSS-LEVISTVT--GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI  252 (365)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSC-EEEEETTT--CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred             CCceEEEEEccCCceEEecccee-EEEEEecc--CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence            34799999999999999988665 56666543  44333 33346888999999999988888888775    5778887


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee--e
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--R  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~--~  251 (350)
                      ......                     ......+.+|. ..|++++|+|+|++|++++.| |+|+|||+++++....  .
T Consensus       253 ~~~~~~---------------------~~~~~~~~~~~-~~V~~~~~Spdg~~lasgs~D-~~V~iwd~~~~~~~~~~~~  309 (365)
T 4h5i_A          253 KSGNTS---------------------VLRSKQVTNRF-KGITSMDVDMKGELAVLASND-NSIALVKLKDLSMSKIFKQ  309 (365)
T ss_dssp             ETTEEE---------------------EEEEEEEESSC-SCEEEEEECTTSCEEEEEETT-SCEEEEETTTTEEEEEETT
T ss_pred             ccceec---------------------ceeeeeecCCC-CCeEeEEECCCCCceEEEcCC-CEEEEEECCCCcEEEEecC
Confidence            632110                     01123456665 689999999999999999999 6999999999987653  3


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  286 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~  286 (350)
                      .|...|++++|+|||++||+++.|++|+|||+...
T Consensus       310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            68899999999999999999999999999999654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=1.3e-23  Score=197.02  Aligned_cols=237  Identities=16%  Similarity=0.223  Sum_probs=169.8

Q ss_pred             ccC-eeEEEEec--CCCEEEEEECCCeEEEEEccCC------CCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC----
Q 018806           99 EVD-LQGVSWHQ--HKHIVAFISGSTQVIVRDYEDS------EGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----  165 (350)
Q Consensus        99 ~~~-V~~v~~sp--~g~~la~~s~d~~i~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----  165 (350)
                      ... |++++|+|  ++++||+++.||.|++|++...      .......+ ..|...|.+++|+|+++.+++++.+    
T Consensus        63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~  141 (615)
T 1pgu_A           63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNF  141 (615)
T ss_dssp             TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCS
T ss_pred             CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCCCCEEEEeccCCCCc
Confidence            446 99999999  9999999999999999999532      12333333 4688999999999999888888876    


Q ss_pred             CcEEEEecCCCCCCceeecccccccceecCCC-----------CCceEEe--------eeccCCCCC---ceeeEEECCC
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFLGALSRGP-----------GTRWTLV--------DFLRSQNGE---QITALSWGPD  223 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~---~v~~~~~sp~  223 (350)
                      +.|++||..  .....+ ......+..+.+.+           ++.+.++        ..+.+|. .   .|.+++|+|+
T Consensus       142 ~~v~~~d~~--~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~  217 (615)
T 1pgu_A          142 GVFISWDSG--NSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH-KQGSFVRDVEFSPD  217 (615)
T ss_dssp             EEEEETTTC--CEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS-CTTCCEEEEEECST
T ss_pred             cEEEEEECC--Ccceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC-CCCceEEEEEECCC
Confidence            688888843  221111 12222222233333           3333333        3556665 5   8999999999


Q ss_pred             -CCeEEEEEeCCCeEEEEeCCCCCceeee-----ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccC--
Q 018806          224 -GRYLASASYESSSFTIWDVAQGLGTPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST--  294 (350)
Q Consensus       224 -g~~l~~~~~d~g~i~iwd~~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~--  294 (350)
                       +++|++++.+ |.|++||+++++.....     .|...+.+++|+ ++++|++++.|+.|++||+++++... +..+  
T Consensus       218 ~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  295 (615)
T 1pgu_A          218 SGEFVITVGSD-RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  295 (615)
T ss_dssp             TCCEEEEEETT-CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             CCCEEEEEeCC-CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence             9999999999 69999999998877655     788999999999 99999999999999999999888743 3333  


Q ss_pred             --CCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCCCCCCceeecccccce
Q 018806          295 --SGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPD  343 (350)
Q Consensus       295 --~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  343 (350)
                        ...+.++.|+ +++++++++ ++.+.+|.+........+.+|..+|....
T Consensus       296 ~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~  346 (615)
T 1pgu_A          296 QLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT  346 (615)
T ss_dssp             CGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred             cccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence              3678888886 888998887 44444443322111224445655554433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=4.2e-23  Score=179.34  Aligned_cols=188  Identities=18%  Similarity=0.279  Sum_probs=141.2

Q ss_pred             ccCeeEEEEec--CCCEEEEEECCCeEEEEEccCCCCC------ceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcE
Q 018806           99 EVDLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGK------DACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGI  168 (350)
Q Consensus        99 ~~~V~~v~~sp--~g~~la~~s~d~~i~iw~~~~~~~~------~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v  168 (350)
                      ...|++++|+|  ++++|++++.|+.|++||+......      ........|...|.+++|+|+  +..+++++.|+.|
T Consensus        57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred             CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence            34699999999  6999999999999999999653211      122333579999999999999  8899999999999


Q ss_pred             EEEecCCCCCCceeec------------ccccccceecCCC-----------------------CCceEEeeeccCCCCC
Q 018806          169 CIWAPSYPGNAASVRS------------GAASFLGALSRGP-----------------------GTRWTLVDFLRSQNGE  213 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~  213 (350)
                      ++||+........+..            ........+.+.+                       .+.......+.+|. .
T Consensus       137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~  215 (351)
T 3f3f_A          137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK-S  215 (351)
T ss_dssp             EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC-S
T ss_pred             EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC-c
Confidence            9999986654433321            1111111122222                       12223355667775 7


Q ss_pred             ceeeEEECCCC----CeEEEEEeCCCeEEEEeCCCCC-------------------------------------------
Q 018806          214 QITALSWGPDG----RYLASASYESSSFTIWDVAQGL-------------------------------------------  246 (350)
Q Consensus       214 ~v~~~~~sp~g----~~l~~~~~d~g~i~iwd~~~~~-------------------------------------------  246 (350)
                      .|.+++|+|++    ++|++++.| |.|++||++.+.                                           
T Consensus       216 ~i~~~~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (351)
T 3f3f_A          216 LIRSISWAPSIGRWYQLIATGCKD-GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL  294 (351)
T ss_dssp             CEEEEEECCCSSCSSEEEEEEETT-SCEEEEEEEECC---------------------------------------CCSE
T ss_pred             ceeEEEECCCCCCcceEEEEEcCC-CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence            99999999998    789999999 799999998641                                           


Q ss_pred             ---ce-eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          247 ---GT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       247 ---~~-~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                         .. .+..|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus       295 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence               11 2334778999999999999999999999999999998765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.2e-23  Score=203.26  Aligned_cols=195  Identities=9%  Similarity=0.071  Sum_probs=145.9

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+| |++|++++.|++|+|||+..  ++....+.  |...|++++|+|+++.+++++.||.|++||+.....
T Consensus        58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~--~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS--QKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             CCCEEEEEEET-TTEEEEEETTCEEEEEETTT--CSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCEEEEEEcC-CCEEEEEECcCeEEEEECCC--CcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            45799999999 88999999999999999964  55555553  667899999999999999999999999999984322


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCceeeee-c---
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRR-G---  253 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~---  253 (350)
                      . .+....             .+.....+.+|. +.|.+++|+|+ +..|++++.| |.| +||+++++...... +   
T Consensus       133 ~-~~~i~~-------------~~~~~~~~~~h~-~~V~sl~~sp~~~~~l~~g~~d-g~v-lWd~~~~~~~~~~~~~~~~  195 (902)
T 2oaj_A          133 S-SFKLDN-------------LQKSSFFPAARL-SPIVSIQWNPRDIGTVLISYEY-VTL-TYSLVENEIKQSFIYELPP  195 (902)
T ss_dssp             E-EEEECC-------------HHHHHTCSSSCC-CCCCEEEEETTEEEEEEEECSS-CEE-EEETTTTEEEEEECCCBCT
T ss_pred             c-cceecc-------------ccccccccccCC-CCeEEEEEccCCCCEEEEEeCC-CcE-EEECCCCceEEEEecccCC
Confidence            1 100000             000001245665 79999999996 4678888888 799 99999887654332 2   


Q ss_pred             ---------------CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec---cc---c-------------CCCCeE
Q 018806          254 ---------------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS---S-------------TSGFVT  299 (350)
Q Consensus       254 ---------------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~---~~---~-------------~~~~v~  299 (350)
                                     ...|.+++|+|+|++|++++.|++|++||+++++...   +.   .             +...|.
T Consensus       196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~  275 (902)
T 2oaj_A          196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKIS  275 (902)
T ss_dssp             TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEE
T ss_pred             cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCee
Confidence                           3679999999999999999999999999999987643   21   1             245799


Q ss_pred             EEEEc----CCC-CEEEEEEC
Q 018806          300 GATWD----PEG-RMILLAFA  315 (350)
Q Consensus       300 ~~~~s----~~g-~~l~~~~~  315 (350)
                      +++|+    |++ .+|++++.
T Consensus       276 ~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          276 KVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             EEEEEECSSTTEEEEEEEEEC
T ss_pred             EEEEEecCCCCCCEEEEeCCC
Confidence            99995    554 45555543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=7.8e-23  Score=176.32  Aligned_cols=182  Identities=18%  Similarity=0.228  Sum_probs=134.0

Q ss_pred             cCeeEEEEec--CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC--CCeEEEEecCCcEEEEecCC
Q 018806          100 VDLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp--~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ..|++++|++  ++++|++++.|++|++||+..........+ .+|...|.+++|+|+  +..+++++.|++|++||+..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            3499999986  489999999999999999964322333333 579999999999998  66788888899999999874


Q ss_pred             CCCC--ce--------eeccccccc------------------ce-ecCCCCCceEE-----------eeeccCCCCCce
Q 018806          176 PGNA--AS--------VRSGAASFL------------------GA-LSRGPGTRWTL-----------VDFLRSQNGEQI  215 (350)
Q Consensus       176 ~~~~--~~--------~~~~~~~~~------------------~~-~~~~~~~~~~~-----------~~~~~~~~~~~v  215 (350)
                      ....  ..        +....+.+.                  .. ++.+.++.+++           ...+.+|. ..|
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~-~~V  215 (316)
T 3bg1_A          137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS-DWV  215 (316)
T ss_dssp             SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS-SCE
T ss_pred             CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC-Cce
Confidence            4211  01        111111111                  11 22333444333           33456776 689


Q ss_pred             eeEEECCCC----CeEEEEEeCCCeEEEEeCCCCC-----ceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCC
Q 018806          216 TALSWGPDG----RYLASASYESSSFTIWDVAQGL-----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  284 (350)
Q Consensus       216 ~~~~~sp~g----~~l~~~~~d~g~i~iwd~~~~~-----~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~  284 (350)
                      .+++|+|++    ++|++++.| |+|++||+.+..     ...+..|...|.+++|+|+|++|++++.|++|++|+..
T Consensus       216 ~~v~~sp~~~~~~~~las~s~D-~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          216 RDVAWAPSIGLPTSTIASCSQD-GRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEECCCCSSCSCCEEEEEETT-CEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEecCCCCCCCceEEEEcCC-CeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999986    789999999 699999998631     12345678899999999999999999999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=1.4e-23  Score=186.48  Aligned_cols=219  Identities=13%  Similarity=0.020  Sum_probs=143.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCc--eeEecCCCCCCeeEEEEee--------CCCeEEEEecCCcEEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRP--------NGGRSLSVGCKGGICI  170 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~sp--------~~~~l~~~~~d~~v~i  170 (350)
                      .+....+++++.+||+++.|++|+|||....+...  ......+|.+.|++++|+|        |++.|++++.|++|+|
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~  170 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII  170 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence            34445566778899999999999999996532111  1122357999999999998        7778888888999999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCCCcee
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      ||+.....                         ...+.+|+ ..+.+++|+|++. +|++++.| |+|++||+++++...
T Consensus       171 Wd~~~~~~-------------------------~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d-~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          171 WRLTDEGP-------------------------ILAGYPLS-SPGISVQFRPSNPNQLIVGERN-GNIRIFDWTLNLSAE  223 (393)
T ss_dssp             EEEETTEE-------------------------EEEEEECS-SCEEEEEEETTEEEEEEEEETT-SEEEEEETTCCC---
T ss_pred             EECCCCce-------------------------eeeecCCC-CCcEEEEECCCCCceEEecCCC-CEEEEEECCCCcccc
Confidence            99974332                         22234454 6899999999875 78888888 799999998874321


Q ss_pred             --------------------------eeecCCCeEEEEEc-CCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCe---
Q 018806          250 --------------------------IRRGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFV---  298 (350)
Q Consensus       250 --------------------------~~~~~~~v~~~~~s-p~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v---  298 (350)
                                                ...|...+.++.|+ |+|+.|++++.|+++++||+.+++.. .+..+...+   
T Consensus       224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~  303 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK  303 (393)
T ss_dssp             -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred             cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence                                      11345667888886 79999999999999999999876642 222222222   


Q ss_pred             ----------------EEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC--CCceeecccccceeec
Q 018806          299 ----------------TGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       299 ----------------~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~  346 (350)
                                      ..+.+.+.++.++++++.+..+..|+......  .+..|..+|....+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp  369 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ  369 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC
Confidence                            22333334555666665556777777665433  4457777887666653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=1.7e-22  Score=181.98  Aligned_cols=229  Identities=12%  Similarity=0.170  Sum_probs=168.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|.++++  ++++|++|+.||.|++||+..  ++....+ .+|...|.+++|  +++.+++++.||.|++||+......
T Consensus       134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--~~~~~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--LECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             CCEEEEEC--CSSEEEEEESSSCEEEEESSS--CCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CcEEEEEE--CCCEEEEEeCCCeEEEEeCCC--CeEEEEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            45777766  899999999999999999854  5555555 589999999999  6678888888999999999865543


Q ss_pred             ceeecccccccce--------ecCCCCCceEEee-----------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE
Q 018806          180 ASVRSGAASFLGA--------LSRGPGTRWTLVD-----------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIW  240 (350)
Q Consensus       180 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw  240 (350)
                      ..+. .....+..        ++.+.++.+.+++           .+.+|. ..|.+++|  ++++|++++.| |.|++|
T Consensus       207 ~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~s~~~d-g~i~vw  281 (435)
T 1p22_A          207 NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-AAVNVVDF--DDKYIVSASGD-RTIKVW  281 (435)
T ss_dssp             EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-SCEEEEEE--ETTEEEEEETT-SEEEEE
T ss_pred             EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC-CcEEEEEe--CCCEEEEEeCC-CeEEEE
Confidence            3332 11222222        2333444444443           445665 68999999  78899999999 799999


Q ss_pred             eCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCC
Q 018806          241 DVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGS  317 (350)
Q Consensus       241 d~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~  317 (350)
                      |+++++... +..|...+.+++|  +++++++++.|+.|++||+++++. ..+..|...|.+++|  ++++|++++ ++.
T Consensus       282 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~  357 (435)
T 1p22_A          282 NTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK  357 (435)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             ECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence            999987765 4457888999998  578999999999999999999887 456689999999999  788999887 555


Q ss_pred             eEEEEEEeCCC---------CCCCceeeccccccee
Q 018806          318 LTLGSIHFASK---------PPSLDAHLLPVDLPDI  344 (350)
Q Consensus       318 ~~~~~~~~~~~---------~~~~~~~~~~v~~~~~  344 (350)
                      +.+|.+.....         ...+.+|..+|....+
T Consensus       358 i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  393 (435)
T 1p22_A          358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF  393 (435)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             EEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence            55555433321         1134567666665443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=4.2e-22  Score=176.67  Aligned_cols=195  Identities=12%  Similarity=0.071  Sum_probs=154.4

Q ss_pred             CeeEEEEecCCCEE-EEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~l-a~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|+|+|++| ++++.|+.|++||+..  ++....+.  +...+.+++|+|+++.+++++. ++.|++||+.....
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~  108 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence            48999999999987 5566899999999953  55555543  3348999999999888877776 59999999984322


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEE-EEEeCCCeEEEEeCCCCCceeeeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                                               ...+..+  ..+.+++|+|+|+.|+ +++.+ +.|++||+.+++..........+
T Consensus       109 -------------------------~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~~  160 (391)
T 1l0q_A          109 -------------------------AGTVKTG--KSPLGLALSPDGKKLYVTNNGD-KTVSVINTVTKAVINTVSVGRSP  160 (391)
T ss_dssp             -------------------------EEEEECS--SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECCSSE
T ss_pred             -------------------------EEEEeCC--CCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEEEecCCCc
Confidence                                     2223333  4789999999999885 55556 79999999998877766666778


Q ss_pred             EEEEEcCCCCEE-EEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCC
Q 018806          258 SILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFAS  327 (350)
Q Consensus       258 ~~~~~sp~g~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~  327 (350)
                      .+++|+|+|++| ++++.++.|++||+++++......+...+.+++|+|+|++|++++.  .+..+..|++..
T Consensus       161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            999999999988 5667889999999999988766667778999999999999998874  456677777654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.90  E-value=1.7e-21  Score=175.13  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=163.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe-cCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~  178 (350)
                      ..|.+++|+|+++++++++.|+.|++||+..  ++....+ ..|...+.+++|+|+++.+++++ .++.|++||+.....
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQANAVHVFDLKT--LAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--CCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceeEEEEcCCCEEEEEECCCCEEEEEECCC--ceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            3689999999999999999999999999954  5554544 36788999999999988887777 479999999975433


Q ss_pred             CceeecccccccceecCCCCC------------------ceEEeeecc-------CCCCCceeeEEECCCCCeEEEE-Ee
Q 018806          179 AASVRSGAASFLGALSRGPGT------------------RWTLVDFLR-------SQNGEQITALSWGPDGRYLASA-SY  232 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~-------~~~~~~v~~~~~sp~g~~l~~~-~~  232 (350)
                      ...+...  .....+.+.+++                  .+.+++.-.       .+. ..+.+++|+|+++.++++ +.
T Consensus       247 ~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          247 IRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-GNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEECCCC--SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-ECEEEEEECSSTTEEEEEETT
T ss_pred             EEEecCC--CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-CCcceEEECCCCCEEEEEecC
Confidence            2222211  112223333322                  222333111       122 467889999999877655 55


Q ss_pred             CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec---------------CCeEEEEeCCCCceeccccCCCC
Q 018806          233 ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF---------------DGTFYLWETNTWTSEPWSSTSGF  297 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---------------d~~v~iwd~~~~~~~~~~~~~~~  297 (350)
                      + +.|++||+.+++......+...+.+++|+|+|++|++++.               ||.|++||+.+++..........
T Consensus       324 ~-~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~  402 (433)
T 3bws_A          324 C-SKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ  402 (433)
T ss_dssp             T-TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS
T ss_pred             C-CEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC
Confidence            6 7999999998887776677788999999999999988876               56999999999988665555678


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          298 VTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +.+++|+|+|++|++++..+..+..|++.
T Consensus       403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            99999999999999887555566666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.90  E-value=1.6e-21  Score=172.87  Aligned_cols=196  Identities=16%  Similarity=0.166  Sum_probs=152.2

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|+|++++|++++ .++.|++||+..  ++....+.  +...+.+++|+|+++.+++++. ++.|++||+.....
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~--~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS--NTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCC--CeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            799999999999886655 579999999954  44444442  4457899999999888855554 79999999974322


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeE
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  258 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~  258 (350)
                                               ...+..+  ..+.+++|+|++++|+.++..+|.|++||+++++......+...+.
T Consensus       151 -------------------------~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  203 (391)
T 1l0q_A          151 -------------------------INTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS  203 (391)
T ss_dssp             -------------------------EEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE
T ss_pred             -------------------------EEEEecC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence                                     2223333  4679999999999885544433799999999998777777778899


Q ss_pred             EEEEcCCCCEEEEEe---cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          259 ILKWSPTGDYFFAAK---FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +++|+|+|++|++++   .++.|++||+++++..........+.+++|+|+|++|++++..+..+..|++..
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            999999999998887   689999999999887554444456899999999999977775556777777654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=1e-21  Score=177.37  Aligned_cols=173  Identities=13%  Similarity=0.194  Sum_probs=125.8

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      +.+  ++++|++|++|+.||.|++||+..  ++....+ .+|...|.+++|+  ++.+++++.|++|++||+.....   
T Consensus       122 ~~~--~~~~g~~l~sg~~dg~i~vwd~~~--~~~~~~~-~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~---  191 (445)
T 2ovr_B          122 ITC--LQFCGNRIVSGSDDNTLKVWSAVT--GKCLRTL-VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC---  191 (445)
T ss_dssp             EEE--EEEETTEEEEEETTSCEEEEETTT--CCEEEEC-CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE---
T ss_pred             EEE--EEEcCCEEEEEECCCcEEEEECCC--CcEEEEE-cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE---
Confidence            454  455689999999999999999954  5555554 5899999999998  46888888899999999984322   


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  260 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~  260 (350)
                                            ...+.+|. ..|.+++|+  ++.+++++.| |+|++||+.+++... +..|...+.++
T Consensus       192 ----------------------~~~~~~h~-~~v~~~~~~--~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~  245 (445)
T 2ovr_B          192 ----------------------IHTLYGHT-STVRCMHLH--EKRVVSGSRD-ATLRVWDIETGQCLHVLMGHVAAVRCV  245 (445)
T ss_dssp             ----------------------EEEECCCS-SCEEEEEEE--TTEEEEEETT-SEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             ----------------------EEEECCCC-CcEEEEEec--CCEEEEEeCC-CEEEEEECCCCcEEEEEcCCcccEEEE
Confidence                                  33345554 577777774  4567777777 577777777766543 34566777777


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +|  +++++++++.|+.|++||+++++. ..+..|...|.+++|  ++++|++++
T Consensus       246 ~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~  296 (445)
T 2ovr_B          246 QY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS  296 (445)
T ss_dssp             EE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred             EE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence            77  667777777777777777777665 344567777777777  667777666

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=5.2e-21  Score=172.75  Aligned_cols=217  Identities=17%  Similarity=0.226  Sum_probs=155.1

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      .+...|.++.|+  ++.|++++.|+.|++||+..  ++....+. +|...|.+++|  +++.+++++.|+.|++||+...
T Consensus       197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~--~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~  269 (445)
T 2ovr_B          197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET--GQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE  269 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS--CCEEEEEE-CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred             CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC--CcEEEEEc-CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence            356668888885  45688888888888888877  45556663 67788888888  5678888888888888888754


Q ss_pred             CCCceeecccccccce--------ecCCCCCceEEe--------eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEE
Q 018806          177 GNAASVRSGAASFLGA--------LSRGPGTRWTLV--------DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW  240 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iw  240 (350)
                      .....+. .....+..        ++.+.++.+.++        ..+.+|. ..+.++.+  +++++++++.| |.|++|
T Consensus       270 ~~~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d-g~i~vw  344 (445)
T 2ovr_B          270 TCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMEL--KDNILVSGNAD-STVKIW  344 (445)
T ss_dssp             EEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEE--ETTEEEEEETT-SCEEEE
T ss_pred             cEeEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc-ccEEEEEE--eCCEEEEEeCC-CeEEEE
Confidence            3332222 11111111        222334444433        3455664 57777776  56799999999 799999


Q ss_pred             eCCCCCceeeee----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-c-----ccCCCCeEEEEEcCCCCEE
Q 018806          241 DVAQGLGTPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W-----SSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       241 d~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~-----~~~~~~v~~~~~s~~g~~l  310 (350)
                      |+++++......    |...|.+++|+  +++|++++.||.|++||+++++... +     ..+.+.|++++|+|+|.+|
T Consensus       345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  422 (445)
T 2ovr_B          345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC  422 (445)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence            999987765443    66789999995  6799999999999999999998743 3     3678899999999999999


Q ss_pred             EEEECCC---eEEEEEEeCC
Q 018806          311 LLAFAGS---LTLGSIHFAS  327 (350)
Q Consensus       311 ~~~~~~~---~~~~~~~~~~  327 (350)
                      ++++.+.   ..+..|++..
T Consensus       423 a~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          423 AVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEECSSSSSCCEEEEEECCC
T ss_pred             EEcccCCCCccEEEEEECCC
Confidence            9887433   3566776654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=4.6e-21  Score=164.77  Aligned_cols=185  Identities=18%  Similarity=0.265  Sum_probs=135.4

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCcee----------------------------------------E
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC----------------------------------------I  138 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~----------------------------------------~  138 (350)
                      ...|++++|+|++++||+|+.|++|++|++..  ++...                                        .
T Consensus        67 ~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~  144 (318)
T 4ggc_A           67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA  144 (318)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCcEEEeecCC--ceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE
Confidence            34699999999999999999999999999854  22111                                        1


Q ss_pred             ecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceee---ccccccccee-------------cCCCCCceE
Q 018806          139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR---SGAASFLGAL-------------SRGPGTRWT  202 (350)
Q Consensus       139 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~-------------~~~~~~~~~  202 (350)
                      ...+|...+..+.|+++++.+++++.|+.|++||+..........   ......+..+             ..+.++.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  224 (318)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred             EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence            123577788999999999999999999999999998544322111   1111111111             122333444


Q ss_pred             Eeeec-------cCCCCCceeeEEECCCCCeEEEEE--eCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEE
Q 018806          203 LVDFL-------RSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAA  272 (350)
Q Consensus       203 ~~~~~-------~~~~~~~v~~~~~sp~g~~l~~~~--~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~  272 (350)
                      +++..       ..+ ...+..+.|+|+++.+++++  .| |.|++||+++++... +..|.+.|.+++|+|+|++|+++
T Consensus       225 lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~d-~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          225 IWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQ-NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             EEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTTT-CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EEecccccccccccc-eeeeeeeeecccccceEEEEEcCC-CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            44321       122 25789999999999988765  56 799999999988765 55688999999999999999999


Q ss_pred             ecCCeEEEEeCCCCc
Q 018806          273 KFDGTFYLWETNTWT  287 (350)
Q Consensus       273 ~~d~~v~iwd~~~~~  287 (350)
                      +.|++|+|||+....
T Consensus       303 s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          303 AADETLRLWRCFELD  317 (318)
T ss_dssp             ETTTEEEEECCSCCC
T ss_pred             ecCCeEEEEECCCCC
Confidence            999999999997643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=7.5e-22  Score=167.29  Aligned_cols=181  Identities=13%  Similarity=0.077  Sum_probs=126.9

Q ss_pred             hhhhhhhccccccCCCCcC----CCCccCeeEEEEec---CCCEEEEEECCCeEEEEEccCCCCCceeEecCCC--CCCe
Q 018806           77 LHGIISHSIKPLLHPDHVH----LLPEVDLQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS--QRDV  147 (350)
Q Consensus        77 ~~gh~~~~~~~~~~p~~~~----~~~~~~V~~v~~sp---~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~--~~~v  147 (350)
                      ..||.+.+....+.|+...    ..++..++.++|++   ++.+||+++.|++|+|||+.+  ++.+..+..+|  ...+
T Consensus       152 ~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--Gk~l~tL~g~~~~v~~v  229 (356)
T 2w18_A          152 GTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--GQLLKKMHIDDSYQASV  229 (356)
T ss_dssp             SSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--CCEEEEEECCC---CCC
T ss_pred             ccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--CcEEEEEcCCCcceeee
Confidence            4667776666666665332    24566899999999   779999999999999999954  77777664222  3467


Q ss_pred             eEEEEeeCCCeEE------------EEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCce
Q 018806          148 KVLEWRPNGGRSL------------SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  215 (350)
Q Consensus       148 ~~~~~sp~~~~l~------------~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (350)
                      .+++|+|+|..++            +++.|+++++||...+.....+.                    +..-.+|. ..+
T Consensus       230 ~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~--------------------~~~p~Gh~-~~~  288 (356)
T 2w18_A          230 CHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML--------------------YCLPPGQA-GRF  288 (356)
T ss_dssp             EEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE--------------------ECCCTTCC-CCE
T ss_pred             EEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE--------------------eeccCCCc-cee
Confidence            8889999987663            34457999999987433221100                    00012443 233


Q ss_pred             eeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCe-EEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          216 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGL-SILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       216 ~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v-~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      .+..+  ++..+++++.| |+|+|||+.+++..... .|...+ .+++|+|||++|++|+.|++|+|||+
T Consensus       289 lsg~~--sg~~lASgS~D-gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          289 LEGDV--KDHCAAAILTS-GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEE--ETTEEEEEETT-SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             Ecccc--CCCEEEEEcCC-CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            33333  37889999999 69999999999877655 465554 46899999999999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.89  E-value=2.3e-21  Score=174.30  Aligned_cols=199  Identities=9%  Similarity=0.023  Sum_probs=157.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe----cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL----TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ..+.+++|+|++.++++++.++.|++||+..  ++.....    ..+|...|.+++|+|++..+++++.|+.|++||+..
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            3567899999777888878889999999864  4443321    236888999999999977677777789999999974


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE-eCCCeEEEEeCCCCCceeeeecC
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGF  254 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~g~i~iwd~~~~~~~~~~~~~  254 (350)
                      ...                         ...+..|. ..+.+++|+|+++.+++++ .+ |.|++||+++++........
T Consensus       201 ~~~-------------------------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~  253 (433)
T 3bws_A          201 LAY-------------------------KATVDLTG-KWSKILLYDPIRDLVYCSNWIS-EDISVIDRKTKLEIRKTDKI  253 (433)
T ss_dssp             CCE-------------------------EEEEECSS-SSEEEEEEETTTTEEEEEETTT-TEEEEEETTTTEEEEECCCC
T ss_pred             ceE-------------------------EEEEcCCC-CCeeEEEEcCCCCEEEEEecCC-CcEEEEECCCCcEEEEecCC
Confidence            332                         22334443 6899999999999987666 56 79999999988776666666


Q ss_pred             CCeEEEEEcCCCCEEEEEe--------cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          255 GGLSILKWSPTGDYFFAAK--------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..+.+++|+|+|++|++++        .|+.|++||+++++......+...+.+++|+|+|+.+++++..+..+..|++.
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence            7799999999999998887        48899999999998866666667889999999999888777666677777775


Q ss_pred             C
Q 018806          327 S  327 (350)
Q Consensus       327 ~  327 (350)
                      .
T Consensus       334 ~  334 (433)
T 3bws_A          334 E  334 (433)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=9.2e-21  Score=169.48  Aligned_cols=187  Identities=17%  Similarity=0.264  Sum_probs=145.5

Q ss_pred             CCEEEEEECC------CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC---cEEEEecCCCCCCce
Q 018806          111 KHIVAFISGS------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---GICIWAPSYPGNAAS  181 (350)
Q Consensus       111 g~~la~~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~iwd~~~~~~~~~  181 (350)
                      +..|++++.+      +.|++||++   +.....+ ..|...+.+++|+|+|+.+++++.++   .|++||+..+.. . 
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~---g~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~-  216 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD---GYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R-  216 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT---SCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E-
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC---CCCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-E-
Confidence            6677776654      799999986   3333444 35788999999999999999988874   999999984322 1 


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE-eCC-CeEEEEeCCCCCceeeeecCCCeEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YES-SSFTIWDVAQGLGTPIRRGFGGLSI  259 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~-g~i~iwd~~~~~~~~~~~~~~~v~~  259 (350)
                                              .+..+. ..+.+++|+|||+.|+..+ .+. ..|++||+.+++...+..+...+.+
T Consensus       217 ------------------------~l~~~~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~  271 (415)
T 2hqs_A          217 ------------------------QVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTE  271 (415)
T ss_dssp             ------------------------EEECCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEE
T ss_pred             ------------------------EeecCC-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccc
Confidence                                    133343 5899999999999988544 331 2599999999887777778888999


Q ss_pred             EEEcCCCCEEEEEec-CC--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCCC
Q 018806          260 LKWSPTGDYFFAAKF-DG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASK  328 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~~  328 (350)
                      ++|+|||++|++++. ++  .|++||+.+++...+..+...+.+++|+|||++|++++.  +...++.|++...
T Consensus       272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             eEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            999999999988876 44  788889999887767677778999999999999998873  2467888887654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=5.7e-21  Score=165.78  Aligned_cols=182  Identities=15%  Similarity=0.220  Sum_probs=126.0

Q ss_pred             cCCCCCCeeEEEEeeCC-CeEEEEecCCcEEEEecCCCCCCcee----ecccccccceecCCCCCc----------eEEe
Q 018806          140 TSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASV----RSGAASFLGALSRGPGTR----------WTLV  204 (350)
Q Consensus       140 ~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~  204 (350)
                      ..+|.+.|++++|+|++ +.|++++.|++|+|||+.........    ..+....+..+.+.+++.          +..+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence            46899999999999984 56777888999999999854432211    122333444455544443          2333


Q ss_pred             e--------eccCC------------------------------------------CCCceeeEEECCCC--CeEEEEEe
Q 018806          205 D--------FLRSQ------------------------------------------NGEQITALSWGPDG--RYLASASY  232 (350)
Q Consensus       205 ~--------~~~~~------------------------------------------~~~~v~~~~~sp~g--~~l~~~~~  232 (350)
                      .        ....+                                          +...+..++|++++  ..+++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~  193 (340)
T 4aow_A          114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW  193 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred             eecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC
Confidence            3        11111                                          01344556666543  34555666


Q ss_pred             CCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEE
Q 018806          233 ESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       233 d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  311 (350)
                      | +.|++||+++++... +..|...|.+++|+|++++|++++.|+.|++||+++.+......+...+..++|+|++.+++
T Consensus       194 d-~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          194 D-KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC  272 (340)
T ss_dssp             T-SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE
T ss_pred             C-CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee
Confidence            6 477777777665543 34577899999999999999999999999999999998876666778899999999998887


Q ss_pred             EEECCCeEEEE
Q 018806          312 LAFAGSLTLGS  322 (350)
Q Consensus       312 ~~~~~~~~~~~  322 (350)
                      .+.++.+.+|.
T Consensus       273 ~~~d~~i~iwd  283 (340)
T 4aow_A          273 AATGPSIKIWD  283 (340)
T ss_dssp             EEETTEEEEEE
T ss_pred             ccCCCEEEEEE
Confidence            77666555544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.88  E-value=2.3e-21  Score=174.59  Aligned_cols=190  Identities=15%  Similarity=0.225  Sum_probs=147.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|.+++|++  .+|++++.|+.|++||+.............+|...|.+++|  +++.+++++.|+.|++||+..... 
T Consensus       214 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-  288 (435)
T 1p22_A          214 EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-  288 (435)
T ss_dssp             SCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-
T ss_pred             CcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE-
Confidence            3688999874  59999999999999999753333222444689999999999  567888888999999999984332 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                                              ...+.+|. ..|.+++|  +++++++++.| |.|++||+++++... +..|...+.
T Consensus       289 ------------------------~~~~~~~~-~~v~~~~~--~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v~  340 (435)
T 1p22_A          289 ------------------------VRTLNGHK-RGIACLQY--RDRLVVSGSSD-NTIRLWDIECGACLRVLEGHEELVR  340 (435)
T ss_dssp             ------------------------EEEEECCS-SCEEEEEE--ETTEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             ------------------------EEEEcCCC-CcEEEEEe--CCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCcCcEE
Confidence                                    34456665 68999998  47899999999 699999999988765 445788999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCc---------e-eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWT---------S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~---------~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +++|  ++++|++++.||.|++||+++++         . ..+..|...|.+++|  ++++|++++. +..+..|++..
T Consensus       341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~  414 (435)
T 1p22_A          341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWDFLN  414 (435)
T ss_dssp             EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC---
T ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC-CCEEEEEECCC
Confidence            9999  78899999999999999997654         2 456689999999999  6888887762 23445555443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.88  E-value=2.2e-21  Score=170.02  Aligned_cols=126  Identities=17%  Similarity=0.399  Sum_probs=107.5

Q ss_pred             eEecCCCCCCeeEEEEeeC---CCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCC
Q 018806          137 CILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE  213 (350)
Q Consensus       137 ~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (350)
                      .....+|.+.|++++|+|+   |+.+++++.|+.|++||+...+..                       +...+.+|. .
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------------------~~~~~~~h~-~   87 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------------------IPKAQQMHT-G   87 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------------------EEEEEEECS-S
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------------------eEEEecccc-C
Confidence            3344689999999999999   477888888999999999842221                       123455665 7


Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEE--cCCCCEEEEEecCCeEEEEeCCCCc
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW--SPTGDYFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~d~~v~iwd~~~~~  287 (350)
                      .|.+++|+|++++|++++.| |.|++||+.+++...+..|...|.+++|  +|++++|++++.|+.|++||+++++
T Consensus        88 ~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCD-KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             CEEEEEECcCCCEEEEEcCC-CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            99999999999999999999 7999999999988888889999999999  8999999999999999999998764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.6e-20  Score=159.26  Aligned_cols=216  Identities=13%  Similarity=0.159  Sum_probs=152.1

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCC-CCCeeEEEEeeCCCeEEEEec--CCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~--d~~v~iwd~~~~  176 (350)
                      ..|.+++|+|+|++|++++ ++.|++||+... ++. ..+...+ ...+.+++|+|+++.+++++.  ++...||.++..
T Consensus        42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~-~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGD-PSP-EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE-TTEEEEEESSSC-CSC-EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred             cceEeeEECCCCCEEEEEc-CCeEEEEeCCCC-CCc-eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence            4699999999999999976 789999999530 222 2333333 478899999999988888884  356667766532


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEE-EEEeCCCeEEEEeC--CCCCceeeeec
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDV--AQGLGTPIRRG  253 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d~g~i~iwd~--~~~~~~~~~~~  253 (350)
                      ....                        ..+..+  ..+..++|+|+++.|+ ++..+ +.+++|++  .++....+..+
T Consensus       119 ~~~~------------------------~~~~~~--~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A          119 GGTP------------------------RLMTKN--LPSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             CCCC------------------------EECCSS--SSEEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCCEEECCCS
T ss_pred             CCce------------------------EEeecC--CCccceEECCCCCEEEEEECCC-CceEEEEEECCCCcceEcccC
Confidence            2111                        112222  3588899999999888 55566 68999985  45555556667


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCC--CCceeccccCCCCeEEEEEcCCCCEEEEEEC----------CCeEE
Q 018806          254 FGGLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEPWSSTSGFVTGATWDPEGRMILLAFA----------GSLTL  320 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------~~~~~  320 (350)
                      ...+.+++|+|+|++|++++ .++.+++|+++  .++...+..+...+..++|+|+|++|++++.          ....+
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence            78899999999999887766 48888888875  4445566677778999999999999988863          22567


Q ss_pred             EEEEeCCCCC----CCceeecccccceee
Q 018806          321 GSIHFASKPP----SLDAHLLPVDLPDIV  345 (350)
Q Consensus       321 ~~~~~~~~~~----~~~~~~~~v~~~~~~  345 (350)
                      +.|++.....    .+..|...+..+.+.
T Consensus       252 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  280 (297)
T 2ojh_A          252 QLMDMDGGNVETLFDLFGGQGTMNSPNWS  280 (297)
T ss_dssp             EEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred             EEEecCCCCceeeeccCCCCcccccceEC
Confidence            7777765433    112444455554443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.2e-21  Score=176.01  Aligned_cols=198  Identities=12%  Similarity=0.092  Sum_probs=142.6

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCC------C--CceeE----ecCCCCCCeeEEEEeeCCCeEE----EE
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE------G--KDACI----LTSDSQRDVKVLEWRPNGGRSL----SV  162 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~------~--~~~~~----~~~~~~~~v~~~~~sp~~~~l~----~~  162 (350)
                      ...++.+++++++.++++++.++ +++|+.....      .  .....    ....+...|.+++|+|+|+.++    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999998888 8888753100      0  00000    1113566799999999988888    44


Q ss_pred             ecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-CCeEEEEEeCCCeEEEEe
Q 018806          163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWD  241 (350)
Q Consensus       163 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd  241 (350)
                      +.|+.|+|||+........ ..             ...+.....+.+|. ..|.+++|+|+ +.+|++++.| |+|++||
T Consensus       115 s~d~~v~iwd~~~~~~~~~-~~-------------~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~D-g~v~iwD  178 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAK-QQ-------------KRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLAD-GSIAVLQ  178 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTC-SS-------------CCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEETT-SCEEEEE
T ss_pred             CCCceEEEEEccccccCCc-CC-------------cceeeeeeccCCCC-CceEEEEECCCCCCEEEEEECC-CeEEEEE
Confidence            5589999999873200000 00             00111234456675 79999999998 7889999999 7999999


Q ss_pred             CCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-ecccc-------CCCCeEEEEEcCCCCEEEE
Q 018806          242 VAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS-------TSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       242 ~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~-------~~~~v~~~~~s~~g~~l~~  312 (350)
                      ++++.... ...|...+.+++|+|+|++|++|+.||.|++||++ ++. ..+..       |...+.+++|++++.++++
T Consensus       179 ~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          179 VTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             ESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             cCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            99885442 34567889999999999999999999999999998 443 22222       2237899999999988876


Q ss_pred             EE
Q 018806          313 AF  314 (350)
Q Consensus       313 ~~  314 (350)
                      ..
T Consensus       258 ~~  259 (434)
T 2oit_A          258 YA  259 (434)
T ss_dssp             EE
T ss_pred             Ec
Confidence            55

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=6.8e-21  Score=169.36  Aligned_cols=176  Identities=12%  Similarity=0.249  Sum_probs=126.0

Q ss_pred             CeeEEEEecCC---CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCC
Q 018806          101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g---~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~  176 (350)
                      .+.++.|+|.+   .++++++.|+.|++||+..  +.....+ ..|...|.+++|+|++.. +++++.|+.|++||+...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          143 TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--GSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             CEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--SCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--cceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence            57888888844   4899999999999999854  4444444 478999999999999886 667777899999999854


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce--------
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--------  248 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~--------  248 (350)
                      .............         ...........|. ..|.+++|+|++++|++++.| |.|++||+.+++..        
T Consensus       220 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~  288 (408)
T 4a11_B          220 SGCLITLDQHNGK---------KSQAVESANTAHN-GKVNGLCFTSDGLHLLTVGTD-NRMRLWNSSNGENTLVNYGKVC  288 (408)
T ss_dssp             SCCSEECCTTTTC---------SCCCTTTSSCSCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCBCCCCCCCCC
T ss_pred             Ccccccccccccc---------cceeecccccccc-CceeEEEEcCCCCEEEEecCC-CeEEEEECCCCccceecccccc
Confidence            4222111100000         0000011123454 689999999999999999988 69999998765321        


Q ss_pred             ----------------------------------------eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          249 ----------------------------------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       249 ----------------------------------------~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                                                              .+..|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence                                                    1234678899999999999999999999999999999876


Q ss_pred             ec
Q 018806          289 EP  290 (350)
Q Consensus       289 ~~  290 (350)
                      ..
T Consensus       369 ~~  370 (408)
T 4a11_B          369 VP  370 (408)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=3.5e-20  Score=173.03  Aligned_cols=194  Identities=13%  Similarity=0.075  Sum_probs=142.2

Q ss_pred             CeeEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec---CCcEEEEecCC-
Q 018806          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSY-  175 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~-  175 (350)
                      +|++++|+|||++||+++. ||+++||+++   +.....++..+...+..++|+|| +.++++..   +...++|.+.. 
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~---~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYD---GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEE---TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEc---CCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            5999999999999999887 9999999985   33334454344468999999999 55554543   35567776653 


Q ss_pred             -CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEE-EeCCCeEEEEeCCCCCceeeeec
Q 018806          176 -PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~g~i~iwd~~~~~~~~~~~~  253 (350)
                       .+....                         +...  ..+...+|+|+|+.++.. +.+ +.+.+||+.+++...+..+
T Consensus        99 ~~g~~~~-------------------------l~~~--~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~  150 (582)
T 3o4h_A           99 RPGEEQR-------------------------LEAV--KPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARL  150 (582)
T ss_dssp             STTCCEE-------------------------CTTS--CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEE
T ss_pred             CCCcccc-------------------------ccCC--CCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecC
Confidence             322211                         1111  234466888988764433 334 3666999999877766655


Q ss_pred             CCCeEEEEEcCCCCEEEEEecC----CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCC
Q 018806          254 FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASK  328 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~  328 (350)
                      ..  .+++|+|||++|++++.+    +.|++||+.+++...+..+...+..++|||||++|+++. ++...++.|++...
T Consensus       151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence            44  889999999999988776    789999999999888888888899999999999999554 33347777776544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=9.3e-20  Score=174.95  Aligned_cols=197  Identities=14%  Similarity=0.210  Sum_probs=146.9

Q ss_pred             ccCeeEEEEecCCCEEEEEEC-CC-----eEEEEEccCCCCCceeEecCCCC------------------------CCee
Q 018806           99 EVDLQGVSWHQHKHIVAFISG-ST-----QVIVRDYEDSEGKDACILTSDSQ------------------------RDVK  148 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~-d~-----~i~iw~~~~~~~~~~~~~~~~~~------------------------~~v~  148 (350)
                      ...|.+++|||||++|++++. |+     .|++||+..  ++..... ..+.                        ..+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEE-CGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEcc-chhhcccccccccchhhhhhhhhhhccccCcc
Confidence            345899999999999999998 88     899999864  4433333 2222                        2388


Q ss_pred             EEEEeeCCCeEEEEecCCcEEEEecCCCC--CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCe
Q 018806          149 VLEWRPNGGRSLSVGCKGGICIWAPSYPG--NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY  226 (350)
Q Consensus       149 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  226 (350)
                      +++|||||+.+++++. +.|++||+..+.  ....                         +..+. ..+..++|||||++
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------------l~~~~-~~~~~~~~SPDG~~  165 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------------LTHGE-GFATDAKLSPKGGF  165 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------CCCSS-SCEEEEEECTTSSE
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------cccCC-cccccccCCCCCCE
Confidence            9999999888877765 999999998442  2211                         23332 57899999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCCceeeeecC-CC----------------eEEEEEcCCCCEEEEEecCC-------------
Q 018806          227 LASASYESSSFTIWDVAQGLGTPIRRGF-GG----------------LSILKWSPTGDYFFAAKFDG-------------  276 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~~~~~~~~~~-~~----------------v~~~~~sp~g~~l~~~~~d~-------------  276 (350)
                      |++++.  +.|++||+.+++...+.... ..                +..++|||||++|++++.|+             
T Consensus       166 la~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p  243 (741)
T 2ecf_A          166 VSFIRG--RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA  243 (741)
T ss_dssp             EEEEET--TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS
T ss_pred             EEEEeC--CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCC
Confidence            999874  38999999988765544322 21                47799999999999887765             


Q ss_pred             --------------------eEEEEeCCC-Cceeccc---cCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEEEeCCC
Q 018806          277 --------------------TFYLWETNT-WTSEPWS---STSGFVTGATWDPEGRMILLAFA----GSLTLGSIHFASK  328 (350)
Q Consensus       277 --------------------~v~iwd~~~-~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~----~~~~~~~~~~~~~  328 (350)
                                          .|++||+.+ ++...+.   .+...+.+++| |||++|+++..    ....++.|+....
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          244 DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence                                899999998 8765443   46678999999 99999998752    2356666665543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=2.4e-18  Score=149.26  Aligned_cols=202  Identities=12%  Similarity=0.174  Sum_probs=142.0

Q ss_pred             cCeeEEEEecCCCEEEEEECC-CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGS-TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  177 (350)
                      ..+.+++|+|+|++|++++.+ +.|.+|+++..++.............+..++|+|+++.+++++. ++.|.+||+. .+
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CC
Confidence            357889999999999998886 99999999733343222111122337899999999888877776 6889999995 22


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE-eCCCeEEEEeCCC-CCceee-----
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQ-GLGTPI-----  250 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~g~i~iwd~~~-~~~~~~-----  250 (350)
                      ...                     .....+..+  ..+.+++|+|+|+++++++ .+ +.|.+||+.+ ++....     
T Consensus       117 ~~~---------------------~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~  172 (343)
T 1ri6_A          117 LPV---------------------GVVDVVEGL--DGCHSANISPDNRTLWVPALKQ-DRICLFTVSDDGHLVAQDPAEV  172 (343)
T ss_dssp             EEE---------------------EEEEEECCC--TTBCCCEECTTSSEEEEEEGGG-TEEEEEEECTTSCEEEEEEEEE
T ss_pred             ccc---------------------cccccccCC--CCceEEEECCCCCEEEEecCCC-CEEEEEEecCCCceeeeccccc
Confidence            111                     112223333  4688999999999998887 66 6999999987 544321     


Q ss_pred             ee-cCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCC--Ccee---ccc---c---CCCCeEEEEEcCCCCEEEEEECCC
Q 018806          251 RR-GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT--WTSE---PWS---S---TSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       251 ~~-~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~--~~~~---~~~---~---~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      .. ....+..++|+|+|+++++++ .++.|++|+++.  ++..   ...   .   ....+..++|+|+|++|+++...+
T Consensus       173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~  252 (343)
T 1ri6_A          173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA  252 (343)
T ss_dssp             ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence            22 234688899999999876555 789999999954  4331   111   1   123567899999999998777555


Q ss_pred             eEEEEEEeC
Q 018806          318 LTLGSIHFA  326 (350)
Q Consensus       318 ~~~~~~~~~  326 (350)
                      ..+..|++.
T Consensus       253 ~~i~v~d~~  261 (343)
T 1ri6_A          253 SLITVFSVS  261 (343)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEEEc
Confidence            566666665

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=2.7e-19  Score=160.59  Aligned_cols=199  Identities=13%  Similarity=0.086  Sum_probs=138.8

Q ss_pred             ccCeeEEEEecCCCEEE----EEECCCeEEEEEccCC-----CC-Cc--eeEecCCCCCCeeEEEEeeC-CCeEEEEecC
Q 018806           99 EVDLQGVSWHQHKHIVA----FISGSTQVIVRDYEDS-----EG-KD--ACILTSDSQRDVKVLEWRPN-GGRSLSVGCK  165 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la----~~s~d~~i~iw~~~~~-----~~-~~--~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d  165 (350)
                      ...|++++|+|+|++||    +++.|+.|+|||+...     .. +.  ......+|...|.+++|+|+ +..+++++.|
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            45699999999999999    7788999999998642     00 11  12333468899999999998 5677778889


Q ss_pred             CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG  245 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~  245 (350)
                      ++|++||++....                         .....+|. ..|.+++|+|+|++|++++.| |+|++||.+ +
T Consensus       172 g~v~iwD~~~~~~-------------------------~~~~~~~~-~~v~~v~wspdg~~lasgs~d-g~v~iwd~~-~  223 (434)
T 2oit_A          172 GSIAVLQVTETVK-------------------------VCATLPST-VAVTSVCWSPKGKQLAVGKQN-GTVVQYLPT-L  223 (434)
T ss_dssp             SCEEEEEESSSEE-------------------------EEEEECGG-GCEEEEEECTTSSCEEEEETT-SCEEEECTT-C
T ss_pred             CeEEEEEcCCCcc-------------------------eeeccCCC-CceeEEEEcCCCCEEEEEcCC-CcEEEEccC-C
Confidence            9999999984311                         11223444 689999999999999999999 699999998 4


Q ss_pred             Ccee-eeec-------CCCeEEEEEcCCCCEEEEE-ecCC------eEEEEeCCCCce---eccc----------cCCCC
Q 018806          246 LGTP-IRRG-------FGGLSILKWSPTGDYFFAA-KFDG------TFYLWETNTWTS---EPWS----------STSGF  297 (350)
Q Consensus       246 ~~~~-~~~~-------~~~v~~~~~sp~g~~l~~~-~~d~------~v~iwd~~~~~~---~~~~----------~~~~~  297 (350)
                      +... +..+       ...+.+++|++++.++++. ..+|      .+++|+++..+.   ..+.          ....+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~  303 (434)
T 2oit_A          224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH  303 (434)
T ss_dssp             CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred             cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence            3332 2222       2378999999998887543 3443      499999986531   1111          11122


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          298 VTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ...+.+-++.+++++++.....+..+..
T Consensus       304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          304 HYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             CEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             ceeeehhccCCEEEEecCCCCceeEEEe
Confidence            2334444888888888865555555544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=2e-19  Score=152.48  Aligned_cols=189  Identities=15%  Similarity=0.162  Sum_probs=138.8

Q ss_pred             cCeeEEEEecCCCEEEEEE--CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEE-EecCCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~  176 (350)
                      ..|.+++|+|+|++|++++  .++...||.++...+. ...+.  +...+..++|+|+++.+++ +..++.++||+++..
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            4588899999999999998  4456777776544333 23332  2335899999999888874 455799999997633


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC--CCCceeeeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA--QGLGTPIRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~--~~~~~~~~~~~  254 (350)
                      ...                        ...+..+. ..+.+++|+|+|+.|++++..++.+.+|++.  .+....+..+.
T Consensus       162 ~~~------------------------~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  216 (297)
T 2ojh_A          162 SGV------------------------ETRLTHGE-GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA  216 (297)
T ss_dssp             TCC------------------------EEECCCSS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred             CCc------------------------ceEcccCC-CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence            211                        11233333 5789999999999998877533688888875  33444455566


Q ss_pred             CCeEEEEEcCCCCEEEEEecC-----------CeEEEEeCCCCceec---cccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          255 GGLSILKWSPTGDYFFAAKFD-----------GTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d-----------~~v~iwd~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      ..+..++|+|+|++|++++.+           +.|++||+++++...   +..|...+..++|+|+|++|+++++.
T Consensus       217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            778899999999999888765           569999999887643   33677889999999999999988743

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=4.4e-18  Score=148.33  Aligned_cols=203  Identities=13%  Similarity=0.152  Sum_probs=137.2

Q ss_pred             cCeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCc--eeEecCC--------CCCCeeEEEEeeCCCeEEEEec-CCc
Q 018806          100 VDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKD--ACILTSD--------SQRDVKVLEWRPNGGRSLSVGC-KGG  167 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~--~~~~~~~--------~~~~v~~~~~sp~~~~l~~~~~-d~~  167 (350)
                      ..+..++|+|||++|++++ .++.+.+|++.. ++..  .......        +...+.+++|+|+|+ ++++.. ++.
T Consensus        86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~  163 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAA-DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDK  163 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEETTTTEEEEEEECT-TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTE
T ss_pred             CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC-CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCE
Confidence            4578899999999999888 689999999953 2221  2222111        122488999999988 665555 689


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--C
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--G  245 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--~  245 (350)
                      |++|++...+....                      ...+..+....+..++|+|||+++++++..++.|.+|++..  +
T Consensus       164 v~~~~~~~~g~~~~----------------------~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  221 (347)
T 3hfq_A          164 VYVYNVSDAGQLSE----------------------QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG  221 (347)
T ss_dssp             EEEEEECTTSCEEE----------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             EEEEEECCCCcEEE----------------------eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            99999983322111                      11112222246788999999998887665547999999874  4


Q ss_pred             Cceeee---ecC------CCeEEEEEcCCCCEEE-EEecCCeEEEEeCCC-Cce---eccccCCCCeEEEEEcCCCCEEE
Q 018806          246 LGTPIR---RGF------GGLSILKWSPTGDYFF-AAKFDGTFYLWETNT-WTS---EPWSSTSGFVTGATWDPEGRMIL  311 (350)
Q Consensus       246 ~~~~~~---~~~------~~v~~~~~sp~g~~l~-~~~~d~~v~iwd~~~-~~~---~~~~~~~~~v~~~~~s~~g~~l~  311 (350)
                      +.....   ...      ..+..++|+|||++|+ +...++.|.+|++.. ++.   ..+..+...+..++|+|||++|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~  301 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVV  301 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEE
Confidence            332211   111      3488899999999885 455689999999973 222   22334455688999999999999


Q ss_pred             EEECCCeEEEEEEeC
Q 018806          312 LAFAGSLTLGSIHFA  326 (350)
Q Consensus       312 ~~~~~~~~~~~~~~~  326 (350)
                      ++..+...+..|++.
T Consensus       302 v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          302 VVNQNTDNATLYARD  316 (347)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEEcCCCcEEEEEEe
Confidence            988554455555543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=2.3e-18  Score=149.05  Aligned_cols=196  Identities=10%  Similarity=0.072  Sum_probs=140.9

Q ss_pred             CeeEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCc-eeEecCCCCCCeeEEEEeeCCCeEEEEecC-C--cEEEEecCC
Q 018806          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY  175 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~iwd~~~  175 (350)
                      .+ +++|+|+|++|++++. ++.|.+||...  ++. ...+ ..+..+..+++|+|+|+.+++...+ +  .|.+||+..
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQL--EPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSS--SSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--CceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            35 8999999997777766 88999999864  443 3333 2345555559999998888743334 3  899999974


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCe-EEEEeCCCCCce-----e
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-FTIWDVAQGLGT-----P  249 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~-i~iwd~~~~~~~-----~  249 (350)
                      .+..                         ..+..+  ....+++|+|+|+++++++.+++. |.+|++......     .
T Consensus       118 ~~~~-------------------------~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~  170 (331)
T 3u4y_A          118 NKFI-------------------------STIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE  170 (331)
T ss_dssp             TEEE-------------------------EEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             CCeE-------------------------EEEECC--CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence            3321                         122222  356899999999987777655357 999998864332     2


Q ss_pred             eeecCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCce---eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          250 IRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       250 ~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      .......+..++|+|+|++++++ ..++.|++||+++++.   .........+..++|+|||++|+++..++..+..|+.
T Consensus       171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            22334568899999999977555 4688999999998886   4444455678899999999999888766666777776


Q ss_pred             CC
Q 018806          326 AS  327 (350)
Q Consensus       326 ~~  327 (350)
                      ..
T Consensus       251 ~~  252 (331)
T 3u4y_A          251 LS  252 (331)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=5.9e-18  Score=146.81  Aligned_cols=204  Identities=15%  Similarity=0.180  Sum_probs=136.9

Q ss_pred             CeeEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe-cCCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~  178 (350)
                      .+.+++|+|+|++|++++. ++.|.+|++............ .....+.+++|+|+++.+++++ .++.|++||+...+.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            6789999999998877765 889999999521111112222 3345689999999988888877 679999999984232


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--CCceee--ee--
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPI--RR--  252 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--~~~~~~--~~--  252 (350)
                      ...+..                    ..+..+....+..++|+|+|+++++++..++.|.+|++..  ++....  ..  
T Consensus       164 ~~~~~~--------------------~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~  223 (343)
T 1ri6_A          164 LVAQDP--------------------AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  223 (343)
T ss_dssp             EEEEEE--------------------EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             eeeecc--------------------cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc
Confidence            211110                    0112222247788999999998877764336999999954  433211  11  


Q ss_pred             --c---CCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCC--CCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          253 --G---FGGLSILKWSPTGDYFFAA-KFDGTFYLWETN--TWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       253 --~---~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~--~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                        .   ...+..++|+|+|++|+++ ..++.|++||++  +++.  .........+..++|+|+|++|++++..+..+..
T Consensus       224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  303 (343)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEE
Confidence              1   2356689999999988754 478999999998  3333  2222223348899999999999988744444444


Q ss_pred             EEe
Q 018806          323 IHF  325 (350)
Q Consensus       323 ~~~  325 (350)
                      |++
T Consensus       304 ~~~  306 (343)
T 1ri6_A          304 YEI  306 (343)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=3.7e-19  Score=170.76  Aligned_cols=214  Identities=13%  Similarity=0.138  Sum_probs=144.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|.+++|||||++|++++. +.|++||+..........+ ..|...+..++|+|||+.+++++ ++.|++||+..+. ..
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~  185 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QM  185 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EE
Confidence            4889999999999999886 8999999964210022333 35777899999999988777665 5799999987432 11


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC-------------------------
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-------------------------  235 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g-------------------------  235 (350)
                      .+.......   +..+. ..|.    .... ...+.+++|||||++|++++.+.+                         
T Consensus       186 ~~~~~~~~~---~~~g~-~~~v----~~~~-~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~  256 (741)
T 2ecf_A          186 QLTADGSTT---IGNGI-AEFV----ADEE-MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA  256 (741)
T ss_dssp             ECCCCCCSS---EEESC-CCHH----HHHH-SCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred             EeccCCccc---eeccc-ccee----eeec-cccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence            111100000   00000 0000    0000 123578999999999999987621                         


Q ss_pred             -------eEEEEeCCC-CCceeee---ecCCCeEEEEEcCCCCEEEEEec-----CCeEEEEeCCCCceecccc-CC-C-
Q 018806          236 -------SFTIWDVAQ-GLGTPIR---RGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWSS-TS-G-  296 (350)
Q Consensus       236 -------~i~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~-----d~~v~iwd~~~~~~~~~~~-~~-~-  296 (350)
                             .|++||+.+ ++...+.   .+...+..++| |||++|++++.     +..|++||+.+++...+.. +. . 
T Consensus       257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~  335 (741)
T 2ecf_A          257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW  335 (741)
T ss_dssp             TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence                   789999998 8765544   35567899999 99999987654     4689999999998754432 22 2 


Q ss_pred             --CeEEEEEcCCCCEEEEEE-CCCeEEEEEEeCCC
Q 018806          297 --FVTGATWDPEGRMILLAF-AGSLTLGSIHFASK  328 (350)
Q Consensus       297 --~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~  328 (350)
                        .+..++|+|||++++++. ++...+|.++....
T Consensus       336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred             CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence              456899999999777665 44467887775544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=2e-19  Score=172.09  Aligned_cols=197  Identities=13%  Similarity=0.120  Sum_probs=144.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCC---CeeEEEEeeCCCeEEEEecC---------CcEE
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCK---------GGIC  169 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d---------~~v~  169 (350)
                      +.+++|+|||+++++ +.||+|++||+.+  ++....+ ..|..   .|.+++|||||+++++++.+         +.++
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~--g~~~~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVET--NTSTVLI-EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGG--CCCEEEE-CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCC--CcEEEEe-ccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            677899999997766 7899999999965  4443433 34443   49999999999988888764         6788


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      +||+..+.. ..+..                      ..++. ..+..++|||||+.|++++.  +.|++||+.+++...
T Consensus        95 ~~d~~~~~~-~~l~~----------------------~~~~~-~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~  148 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDP----------------------PEVSN-AKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIR  148 (723)
T ss_dssp             EEESSSCCC-EECCC----------------------TTCCS-CCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEE
T ss_pred             EEECCCCce-EeccC----------------------Ccccc-ccccccEECCCCCEEEEEEC--CeEEEEECCCCceEE
Confidence            999984432 11111                      12222 35889999999999999876  389999999987766


Q ss_pred             eeec-CCC------------------eEEEEEcCCCCEEEEEecCC----------------------------------
Q 018806          250 IRRG-FGG------------------LSILKWSPTGDYFFAAKFDG----------------------------------  276 (350)
Q Consensus       250 ~~~~-~~~------------------v~~~~~sp~g~~l~~~~~d~----------------------------------  276 (350)
                      +... ...                  +.+++|||||++|++++.|+                                  
T Consensus       149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  228 (723)
T 1xfd_A          149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI  228 (723)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred             EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence            5443 222                  27899999999999887543                                  


Q ss_pred             eEEEEeCCCCce-eccccC------CCCeEEEEEcCCCCEEEEEEC---CCeEEEEEEeCCC
Q 018806          277 TFYLWETNTWTS-EPWSST------SGFVTGATWDPEGRMILLAFA---GSLTLGSIHFASK  328 (350)
Q Consensus       277 ~v~iwd~~~~~~-~~~~~~------~~~v~~~~~s~~g~~l~~~~~---~~~~~~~~~~~~~  328 (350)
                      .|++||+.+++. ..+..+      ...+.+++|||||++|++...   ....++.|++...
T Consensus       229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence            799999998875 444433      567899999999999877653   2356666666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.81  E-value=6.8e-18  Score=146.03  Aligned_cols=202  Identities=11%  Similarity=0.098  Sum_probs=143.8

Q ss_pred             eeEEEEecCCCEEEEEECCC---eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-Cc-EEEEecCCC
Q 018806          102 LQGVSWHQHKHIVAFISGST---QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GG-ICIWAPSYP  176 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~---~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~-v~iwd~~~~  176 (350)
                      ..+++|+|+|++|+++..++   .|.+||+..  ++....+.  ......+++|+|+|+.+++++.+ +. +.+|++...
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             CCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             ccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            33499999999999544442   899999854  44444442  34567999999999877777664 78 999999844


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc---eeeeec
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRG  253 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~---~~~~~~  253 (350)
                      +......                    ...+..  ...+..++|+|+|++++.++..++.|.+||+.+++.   ......
T Consensus       162 g~~~~~~--------------------~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~  219 (331)
T 3u4y_A          162 GVLFDTG--------------------QEFISG--GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT  219 (331)
T ss_dssp             CCEEEEE--------------------EEEECS--SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             CcEeecC--------------------CccccC--CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC
Confidence            3221110                    011111  246789999999998877765447999999998887   555555


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceecc---cc----CCC---CeEEEEEcCCCCEEEEEECCCeEEEE
Q 018806          254 FGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPW---SS----TSG---FVTGATWDPEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~---~~----~~~---~v~~~~~s~~g~~l~~~~~~~~~~~~  322 (350)
                      ...+..++|+|+|++|+++. .++.|.+||+.+++...+   ..    +..   ....++|+|||++|++++.....+..
T Consensus       220 ~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  299 (331)
T 3u4y_A          220 NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKV  299 (331)
T ss_dssp             SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEE
Confidence            67788999999999886664 477899999999877221   11    111   22558999999999988876667888


Q ss_pred             EEeCCCC
Q 018806          323 IHFASKP  329 (350)
Q Consensus       323 ~~~~~~~  329 (350)
                      |++....
T Consensus       300 ~d~~~~~  306 (331)
T 3u4y_A          300 FTISGKV  306 (331)
T ss_dssp             EETTSCE
T ss_pred             EEecCCc
Confidence            8876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=2.9e-18  Score=158.13  Aligned_cols=192  Identities=15%  Similarity=0.144  Sum_probs=147.2

Q ss_pred             EEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEec--CCCCCCceee
Q 018806          106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP--SYPGNAASVR  183 (350)
Q Consensus       106 ~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~--~~~~~~~~~~  183 (350)
                      +|+|++.++++++.|++|.+||..+  ++....+..++.  +..++|+|+|+++++++.+++|++||+  ....      
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t--~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~------  213 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDS--KKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT------  213 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTT--CCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCC--ceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc------
Confidence            3789999999999999999999854  666566543443  899999999999999999999999999  4221      


Q ss_pred             cccccccceecCCCCCceEEeeeccCCCCCceeeEEECC----CCCeEEEEEeCCCeEEEEeCCCCCceeeeec------
Q 018806          184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASYESSSFTIWDVAQGLGTPIRRG------  253 (350)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~------  253 (350)
                                         +...+...  ..+..++|+|    ||+++++++..+++|.+||..+++.......      
T Consensus       214 -------------------~~~~i~~g--~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~  272 (543)
T 1nir_A          214 -------------------KVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD  272 (543)
T ss_dssp             -------------------EEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred             -------------------EEEEEecC--CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence                               12233322  4689999999    9999999986436999999999877654322      


Q ss_pred             ------CCCeEEEEEcCCCCEE-EEEecCCeEEEEeCCCCceec--cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          254 ------FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       254 ------~~~v~~~~~sp~g~~l-~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                            ...+..+.++|++..+ ++...++.|.+||+.+.+...  ...+...+.+++|+|+|+++++++..+..+..|+
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence                  2268899999987665 566778999999998876532  3356667889999999999988876555677777


Q ss_pred             eCCC
Q 018806          325 FASK  328 (350)
Q Consensus       325 ~~~~  328 (350)
                      ....
T Consensus       353 ~~tg  356 (543)
T 1nir_A          353 SKDR  356 (543)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            6654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=2.3e-17  Score=143.81  Aligned_cols=187  Identities=8%  Similarity=0.042  Sum_probs=141.5

Q ss_pred             eeEEEEecCCCEEEEEE--CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          102 LQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      +.+++|+|+|+++++++  .++.|.+||...  ++....+. .+...+..++|+|+|+.++++..++.+.+||.......
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~--~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~  219 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGN--IKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL  219 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTT--TEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCC--CceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE
Confidence            68899999999888776  478899999853  55444442 35556889999999998888888999999998743322


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  259 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~  259 (350)
                      ..+...                     ..++ ...+..++|+|+|+++++++.+++.|.+||..+++......... ...
T Consensus       220 ~~~~~~---------------------~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~  276 (353)
T 3vgz_A          220 SRKKLL---------------------DDGK-EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLA  276 (353)
T ss_dssp             EEEECC---------------------CSSS-CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCC
T ss_pred             EEEEcC---------------------CCCC-CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-Cce
Confidence            221110                     1112 24678899999999888877665799999999887665444333 356


Q ss_pred             EEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          260 LKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       260 ~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ++|+|+|++++++. .++.|.+||..+++..........+.+++|+|+|++|+++.
T Consensus       277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSV  332 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEE
Confidence            99999999776655 68999999999998865555566789999999999888876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=1.7e-18  Score=165.77  Aligned_cols=212  Identities=13%  Similarity=0.130  Sum_probs=139.0

Q ss_pred             CeeEEEEecCCCEEEEEECC---------CeEEEEEccCCCCCceeEec--CCCCCCeeEEEEeeCCCeEEEEecCCcEE
Q 018806          101 DLQGVSWHQHKHIVAFISGS---------TQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d---------~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~  169 (350)
                      .|.+++|||||++||+++.+         +.+.+||+..  ++. ..+.  ..|...+..++|||||+.+++++. +.|+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~  137 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY  137 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC--Cce-EeccCCccccccccccEECCCCCEEEEEEC-CeEE
Confidence            48999999999999999864         7888999964  332 2222  234556899999999888887765 8999


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC---------------
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---------------  234 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---------------  234 (350)
                      +||+..+... .+........  +.. ....|.    ........+.+++|||||++|++++.++               
T Consensus       138 ~~~~~~g~~~-~~~~~~~~~~--~~~-g~~~~v----~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          138 YCAHVGKQAI-RVVSTGKEGV--IYN-GLSDWL----YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EESSSSSCCE-EEECCCBTTT--EEE-EECCHH----HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEECCCCceE-EEecCCCCCc--eEC-ccccee----EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            9999843322 2111100000  000 000000    0000002347899999999999887652               


Q ss_pred             ------------------CeEEEEeCCCCCc-eeeeec------CCCeEEEEEcCCCCEEEEEec----CCeEEEEeCCC
Q 018806          235 ------------------SSFTIWDVAQGLG-TPIRRG------FGGLSILKWSPTGDYFFAAKF----DGTFYLWETNT  285 (350)
Q Consensus       235 ------------------g~i~iwd~~~~~~-~~~~~~------~~~v~~~~~sp~g~~l~~~~~----d~~v~iwd~~~  285 (350)
                                        .+|++||+.+++. ..+..+      ...+..++|+|||++|++...    +..|++||+.+
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence                              1799999998874 333332      456889999999998876653    35799999999


Q ss_pred             Cceeccc--cCCCCe----EEEEEcCCCCEEEEE-ECCC------eEEEEEE
Q 018806          286 WTSEPWS--STSGFV----TGATWDPEGRMILLA-FAGS------LTLGSIH  324 (350)
Q Consensus       286 ~~~~~~~--~~~~~v----~~~~~s~~g~~l~~~-~~~~------~~~~~~~  324 (350)
                      ++...+.  .+...+    ..++|+|||+.|++. ++.+      ..++.++
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            9875432  233433    378999999988875 4332      3677776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=2.1e-18  Score=164.69  Aligned_cols=210  Identities=16%  Similarity=0.148  Sum_probs=143.4

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC--
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP--  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~--  176 (350)
                      ...|.+++|||| +.++++ .++.+++||+..  ++. ..+ ..+...+.+++|+|||+.+++ +.++.|++|++...  
T Consensus        81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~--~~~-~~l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA--RKV-TYL-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGE  153 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEE-ETTEEEEEETTT--TEE-EEE-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTS
T ss_pred             ccCceeEEECCC-CeEEEE-ECCEEEEEECCC--Cce-EEc-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccc
Confidence            356999999999 666665 459999999953  433 233 245677999999999888777 57899999999851  


Q ss_pred             --CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE-----------------------
Q 018806          177 --GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-----------------------  231 (350)
Q Consensus       177 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-----------------------  231 (350)
                        +....+......   .+..+.       ...+.+ ...+.+++|||||++|++++                       
T Consensus       154 ~~g~~~~~~~~~~~---~~~~g~-------~~~~ee-~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  222 (706)
T 2z3z_A          154 GMSRAIAVTIDGTE---TLVYGQ-------AVHQRE-FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP  222 (706)
T ss_dssp             CCCCCEESCSCCBT---TEEESS-------CCGGGC-TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred             cCCCcEEeccCCCC---CeEccc-------chhhhh-cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence              222211111000   000000       001111 13468999999999999987                       


Q ss_pred             ----------eCCCeEEEEeCCCCCceeee---ecCCCeEEEEEcCCCCEEEEEecCC-----eEEEEeCCCC-ceeccc
Q 018806          232 ----------YESSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW-TSEPWS  292 (350)
Q Consensus       232 ----------~d~g~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~d~-----~v~iwd~~~~-~~~~~~  292 (350)
                                .+ +.|++||+.+++...+.   .+...+.+++|+|||++|++++.++     .|++||+.++ +...+.
T Consensus       223 ~~y~~~g~~~~~-~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          223 LYYPMAGTPSHH-VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             ECCCBTTSCCCE-EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             eeCCCCCCCCCe-eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE
Confidence                      23 48999999988765544   3456789999999999999887775     8999999998 443332


Q ss_pred             --cCCC---CeEEEEEcC--CCCEEEEEE-CCCeEEEEEEeCC
Q 018806          293 --STSG---FVTGATWDP--EGRMILLAF-AGSLTLGSIHFAS  327 (350)
Q Consensus       293 --~~~~---~v~~~~~s~--~g~~l~~~~-~~~~~~~~~~~~~  327 (350)
                        .+..   .+..++|+|  ||++|+++. ++...+|.++...
T Consensus       302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          302 VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence              2222   246789999  999888776 4557788877443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=7.6e-17  Score=141.30  Aligned_cols=225  Identities=14%  Similarity=0.168  Sum_probs=143.7

Q ss_pred             ccCeeEEEEecCCCEEEEEECC----CeEEEEEccCCCCCceeEec-CCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEe
Q 018806           99 EVDLQGVSWHQHKHIVAFISGS----TQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA  172 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d----~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd  172 (350)
                      ...+..++|+|||++|++++.+    +.+.+|+++..++....... ..+......+++  +++.++++.. ++.+.+|+
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence            3457789999999999998875    79999999754343222211 124456677777  7777777775 68999999


Q ss_pred             cCCCCCCceeec----ccccc---------cceecCCCCCc-----------eEEeeec--------------------c
Q 018806          173 PSYPGNAASVRS----GAASF---------LGALSRGPGTR-----------WTLVDFL--------------------R  208 (350)
Q Consensus       173 ~~~~~~~~~~~~----~~~~~---------~~~~~~~~~~~-----------~~~~~~~--------------------~  208 (350)
                      +...+....+..    ....+         ...+.++++++           +.++..-                    .
T Consensus       127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~  206 (361)
T 3scy_A          127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK  206 (361)
T ss_dssp             BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred             eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence            975443322211    00000         01233344333           2222110                    1


Q ss_pred             CCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee------cCCCeEEEEEcCCCCEEEEEecC--CeEEE
Q 018806          209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------GFGGLSILKWSPTGDYFFAAKFD--GTFYL  280 (350)
Q Consensus       209 ~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~d--~~v~i  280 (350)
                      ......+..++|+|||+++++++..++.|.+||+.++....+..      +......++|+|||++|+++..+  +.|.+
T Consensus       207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence            11124567899999999998887543699999998775433221      22446799999999999776654  89999


Q ss_pred             EeCC--CCceec--cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          281 WETN--TWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       281 wd~~--~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      |+++  +++...  .......+..++|+|||++|++++..+..+..|++
T Consensus       287 ~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          287 FKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             EEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            9996  455422  12225578899999999999998844444444433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=2.2e-17  Score=143.92  Aligned_cols=208  Identities=7%  Similarity=-0.070  Sum_probs=151.6

Q ss_pred             cCeeEEEEecCCCEEEEEEC-------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEE
Q 018806          100 VDLQGVSWHQHKHIVAFISG-------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIW  171 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iw  171 (350)
                      ..+..++|+|+|++|++++.       ++.|.+||...  ++....+.  ....+..++|+|+|+.++++.. ++.|.+|
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            45889999999999988774       56899999854  55444443  2345789999999887777666 5999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-CCCeEEEEeCCCCCceee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~g~i~iwd~~~~~~~~~  250 (350)
                      |....+....+.....                 ..........+.+++|+|+|++++++.. +++.|.+||..+++....
T Consensus       117 d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~  179 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDR-----------------KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA  179 (353)
T ss_dssp             ETTTCCEEEEEESCCC-----------------CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             eCCCCeeEEEEecCCC-----------------ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE
Confidence            9985443222211100                 0000000113688999999998888773 236999999998877665


Q ss_pred             ee-cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          251 RR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       251 ~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      .. +...+..++|+|+|++|++++.++.|.+||..+++.....     .+...+..++|+|+|++|+++......++.|+
T Consensus       180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            55 4556889999999999999999999999999998874322     24556788999999999988886667788887


Q ss_pred             eCCC
Q 018806          325 FASK  328 (350)
Q Consensus       325 ~~~~  328 (350)
                      ....
T Consensus       260 ~~~~  263 (353)
T 3vgz_A          260 TRNG  263 (353)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            7543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=2.2e-17  Score=142.82  Aligned_cols=220  Identities=10%  Similarity=-0.032  Sum_probs=132.7

Q ss_pred             eeEEEEecCCCEEEEE-ECCCeEEEEEccCCCCCceeEecCCC----CCCeeEEEEeeCCCeEEEEe------------c
Q 018806          102 LQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDS----QRDVKVLEWRPNGGRSLSVG------------C  164 (350)
Q Consensus       102 V~~v~~sp~g~~la~~-s~d~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~------------~  164 (350)
                      +..++|+|+|++++++ ..++.|.+||+..  ++....+..++    ...+..++|+|+|+.++++.            .
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCC--CCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence            6789999999877554 4578999999854  55444443232    22678999999988887775            4


Q ss_pred             CCcEEEEecCCCCCCceeecccccccceecCCCCCc--------eEEeeeccCC------CCCceeeEEECCCCCeEEEE
Q 018806          165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--------WTLVDFLRSQ------NGEQITALSWGPDGRYLASA  230 (350)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~  230 (350)
                      ++.|.+||+........+...  .....+.++++++        +.+++.-.+.      .......+.|+|+|+.++..
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             CceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            699999999744332222211  0111122222222        1111110000      00112333455555544433


Q ss_pred             EeCCC-----------------------eEEEEeCCCCCcee--eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 018806          231 SYESS-----------------------SFTIWDVAQGLGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       231 ~~d~g-----------------------~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~  285 (350)
                      +...+                       .|.+||+.+++...  ...+...+.+++|+|+|++++++  ++.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence            32211                       24555555554321  11233456789999999999887  69999999999


Q ss_pred             CceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          286 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       286 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ++..........+.+++|+|+|++|++++ .+..+..|++...
T Consensus       270 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~i~v~d~~~~  311 (337)
T 1pby_B          270 NASIKRVPLPHSYYSVNVSTDGSTVWLGG-ALGDLAAYDAETL  311 (337)
T ss_dssp             TEEEEEEECSSCCCEEEECTTSCEEEEES-BSSEEEEEETTTC
T ss_pred             CcCcceecCCCceeeEEECCCCCEEEEEc-CCCcEEEEECcCC
Confidence            88755554556788999999999998874 3456667766543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=3.9e-18  Score=162.80  Aligned_cols=204  Identities=16%  Similarity=0.200  Sum_probs=142.1

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCC---CCCceeEecCCCCCC--------------eeEEEEeeCCCeEEEE
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---EGKDACILTSDSQRD--------------VKVLEWRPNGGRSLSV  162 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~---~~~~~~~~~~~~~~~--------------v~~~~~sp~~~~l~~~  162 (350)
                      ..+.+++|||||++||++ .++.|++|++...   .++. ..+...+...              +.+++|+|||+.|+++
T Consensus       121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~  198 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY  198 (706)
T ss_dssp             TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred             ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence            357889999999999985 7899999999640   0222 2222223222              5899999999999888


Q ss_pred             ec---------------------------------CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccC
Q 018806          163 GC---------------------------------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS  209 (350)
Q Consensus       163 ~~---------------------------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (350)
                      +.                                 +..|++||+..+.. ..                      ......
T Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~----------------------~~~~~~  255 (706)
T 2z3z_A          199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VY----------------------LQTGEP  255 (706)
T ss_dssp             EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EE----------------------CCCCSC
T ss_pred             EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-Ee----------------------eccCCC
Confidence            73                                 35677777763211 00                      000112


Q ss_pred             CCCCceeeEEECCCCCeEEEEEeCC----CeEEEEeCCCC-Cceeeee--cCC---CeEEEEEcC--CCCEEEEEecCCe
Q 018806          210 QNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQG-LGTPIRR--GFG---GLSILKWSP--TGDYFFAAKFDGT  277 (350)
Q Consensus       210 ~~~~~v~~~~~sp~g~~l~~~~~d~----g~i~iwd~~~~-~~~~~~~--~~~---~v~~~~~sp--~g~~l~~~~~d~~  277 (350)
                      + ...+.+++|+|||++|++++.+.    ..|++||+.++ ....+..  +..   .+..++|+|  ||+++++++.|+.
T Consensus       256 ~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          256 K-EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             T-TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             C-ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            3 35789999999999999987762    28999999998 4444332  222   246789999  9999999988998


Q ss_pred             EEEEeCC-CCc-eeccccCCCCeEE-EEEcCCCCEEEEEECCC----eEEEEEEeCCCC
Q 018806          278 FYLWETN-TWT-SEPWSSTSGFVTG-ATWDPEGRMILLAFAGS----LTLGSIHFASKP  329 (350)
Q Consensus       278 v~iwd~~-~~~-~~~~~~~~~~v~~-~~~s~~g~~l~~~~~~~----~~~~~~~~~~~~  329 (350)
                      ++||+++ +++ ...+..+...+.. ++|+|+|+.|++++..+    ..++.++.....
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            8888775 333 4556666667776 79999999998877443    588888876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.79  E-value=2.6e-17  Score=151.73  Aligned_cols=210  Identities=10%  Similarity=0.034  Sum_probs=143.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee----CCCeEEEEec-CCcEEEEecC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP----NGGRSLSVGC-KGGICIWAPS  174 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~-d~~v~iwd~~  174 (350)
                      ..+.+++|+|||++|++++.|+.|.+||+...+++....+.  +...+..++|+|    +|+++++++. +++|.+||..
T Consensus       179 ~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          179 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            34899999999999999999999999999322355545543  456789999999    9888888775 7999999987


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee--eee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRR  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~--~~~  252 (350)
                      ..+....+......               .....-|....+.++.++|+++.++.+..++|+|.+||+.+.+...  ...
T Consensus       257 t~~~~~~i~~~g~~---------------~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          257 TLEPKQIVSTRGMT---------------VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             TCCEEEEEECCEEC---------------SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred             ccccceeecccCcc---------------cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence            54433332211000               0000012224789999999888777666555899999998865433  334


Q ss_pred             cCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccc-----cCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEEe
Q 018806          253 GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPE-GRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~~~~  325 (350)
                      +...+..++|+|+|+++++++ .+++|.+||++++++....     .|.+....+ ++|+ |+.++++..++..+..|+.
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            556788899999999876554 5889999999999875432     244433333 4787 4444444334445666665


Q ss_pred             CC
Q 018806          326 AS  327 (350)
Q Consensus       326 ~~  327 (350)
                      ..
T Consensus       401 ~~  402 (543)
T 1nir_A          401 DP  402 (543)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.79  E-value=8.9e-18  Score=166.94  Aligned_cols=181  Identities=10%  Similarity=0.062  Sum_probs=147.6

Q ss_pred             CeeEEEEe-cCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCC-CeeEEEEeeCCCeEEEEecCCcEE-EEecCCCC
Q 018806          101 DLQGVSWH-QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~s-p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~v~-iwd~~~~~  177 (350)
                      .+.+++|| |||++||+++ ++.+.+|+...  +. ...+ ..|.. .+..++|+ ||+.+++++.++.+. +|++....
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~--~~-~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG--TY-VLKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTS--SB-EEEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCC--Cc-eEEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            58999999 9999999887 78899999853  33 2333 35666 89999999 988888888777777 88876321


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGG  256 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~  256 (350)
                       .                         ..+.++ ...+..++|+|||++|++++.+ +.|++||+.+++...+. .+.+.
T Consensus       371 -~-------------------------~~l~~~-~~~~~~~~~SpDG~~la~~~~~-~~v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          371 -A-------------------------EKFEEN-LGNVFAMGVDRNGKFAVVANDR-FEIMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             -E-------------------------EECCCC-CCSEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSC
T ss_pred             -c-------------------------eEecCC-ccceeeeEECCCCCEEEEECCC-CeEEEEECCCCceEEeccCCCCC
Confidence             1                         112333 3688999999999999999988 69999999999877666 67788


Q ss_pred             eEEEEEcCCCCEEEEEecCC----------eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          257 LSILKWSPTGDYFFAAKFDG----------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~----------~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      +..++|+|||++|++++.++          .|++||+.+++...+..+...+..++|+|||++|+++++
T Consensus       423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            89999999999998887644          899999999887777788888999999999999998874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=3e-17  Score=143.02  Aligned_cols=209  Identities=13%  Similarity=0.106  Sum_probs=134.1

Q ss_pred             CeeEEEEecCCCEEEEEEC---CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      .+..++|+|||+ |++++.   ++.|.+|+++....+.+... ..+...+..++|+|+|+.+++++. ++.+.+|++...
T Consensus        41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~  118 (347)
T 3hfq_A           41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD  118 (347)
T ss_dssp             CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence            467899999999 555554   68999999964222222222 235677899999999988888884 699999999743


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC-CCCceeee---e
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-QGLGTPIR---R  252 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~-~~~~~~~~---~  252 (350)
                      +....+.....        ...+.     .... ....+.+++|+|+|+ ++++...++.|.+|++. +++.....   .
T Consensus       119 g~~~~~~~~~~--------~~~~p-----~~~~-~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~  183 (347)
T 3hfq_A          119 GALTLTDTVQH--------SGHGP-----RPEQ-DGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM  183 (347)
T ss_dssp             SCEEEEEEEEC--------CCCCS-----STTC-SSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred             CCeeecceeec--------CCCCC-----Cccc-cCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc
Confidence            33222111000        00000     0000 113588899999999 55554433699999998 45433221   1


Q ss_pred             -cCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCCC--Cceec---cccC------CCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          253 -GFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT--WTSEP---WSST------SGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       253 -~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~--~~~~~---~~~~------~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                       ....+..++|+|||++++++ ..++.|++|+++.  ++...   +...      ...+..++|+|||++|+++...+..
T Consensus       184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~  263 (347)
T 3hfq_A          184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT  263 (347)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred             CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence             22367889999999977654 5678999999874  54321   1111      1458899999999999777644445


Q ss_pred             EEEEEeC
Q 018806          320 LGSIHFA  326 (350)
Q Consensus       320 ~~~~~~~  326 (350)
                      +..|++.
T Consensus       264 v~v~~~~  270 (347)
T 3hfq_A          264 LAVFAVT  270 (347)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            5555553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.78  E-value=1.2e-17  Score=166.08  Aligned_cols=194  Identities=12%  Similarity=0.062  Sum_probs=150.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC----------CCCCeeEEEEe-eCCCeEEEEecCCcEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD----------SQRDVKVLEWR-PNGGRSLSVGCKGGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~----------~~~~v~~~~~s-p~~~~l~~~~~d~~v~  169 (350)
                      .+..++|+|||++|+++ .++.|.+|++.   ...+..+...          |...+.+++|+ |||+.+++++ ++.++
T Consensus       246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~---~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~  320 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-KGGSIYIFNPD---TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF  320 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTT---TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred             CcceeeEcCCCCEEEEE-eCCEEEEecCC---ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence            46778999999999987 58899999983   2223322210          23469999999 9988787766 88999


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEE-EEeCCCCCce
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFT-IWDVAQGLGT  248 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~-iwd~~~~~~~  248 (350)
                      +|++.... .                         ..+..+....+..++|+ ||+.|++++.+ +.+. +||+.+++..
T Consensus       321 ~~~~~~~~-~-------------------------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~-~~l~~~~d~~~~~~~  372 (1045)
T 1k32_A          321 IQDVSGTY-V-------------------------LKVPEPLRIRYVRRGGD-TKVAFIHGTRE-GDFLGIYDYRTGKAE  372 (1045)
T ss_dssp             EECTTSSB-E-------------------------EECSCCSCEEEEEECSS-SEEEEEEEETT-EEEEEEEETTTCCEE
T ss_pred             EEcCCCCc-e-------------------------EEccCCCcceEEeeeEc-CCCeEEEEECC-CceEEEEECCCCCce
Confidence            99987321 1                         11333432278999999 99999999887 5899 9999988766


Q ss_pred             eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECC---------Ce
Q 018806          249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAG---------SL  318 (350)
Q Consensus       249 ~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~---------~~  318 (350)
                      .+..+...+..++|+|||++|++++.++.|++||+.+++...+. .|...+.+++|||||++|++++..         ..
T Consensus       373 ~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~  452 (1045)
T 1k32_A          373 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  452 (1045)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCC
Confidence            66666688999999999999999999999999999999886655 788889999999999999887632         24


Q ss_pred             EEEEEEeCC
Q 018806          319 TLGSIHFAS  327 (350)
Q Consensus       319 ~~~~~~~~~  327 (350)
                      .++.|++..
T Consensus       453 ~i~l~d~~~  461 (1045)
T 1k32_A          453 AIHVYDMEG  461 (1045)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCC
Confidence            666776654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=2.4e-18  Score=164.62  Aligned_cols=188  Identities=18%  Similarity=0.222  Sum_probs=134.9

Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCC---CeeEEEEeeCCCeEEEEec---------CCcEEEE
Q 018806          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGC---------KGGICIW  171 (350)
Q Consensus       104 ~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~---------d~~v~iw  171 (350)
                      +++|+|+|+++++ +.|+.|++||+..  ++....+ ..+..   .+.+++|||||+.+++++.         ++.+++|
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIET--GQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSS--CCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCC--CcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            6799999965554 5799999999964  4433333 23322   4899999999998888776         6899999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR  251 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~  251 (350)
                      |+..+.....                       ..+    ...+..++|||||+.|+++. + +.|++||+.+++...+.
T Consensus        96 d~~~g~~~~~-----------------------~~l----~~~~~~~~~SPDG~~la~~~-~-~~i~~~~~~~g~~~~l~  146 (719)
T 1z68_A           96 DLSNGEFVRG-----------------------NEL----PRPIQYLCWSPVGSKLAYVY-Q-NNIYLKQRPGDPPFQIT  146 (719)
T ss_dssp             ETTTTEECCS-----------------------SCC----CSSBCCEEECSSTTCEEEEE-T-TEEEEESSTTSCCEECC
T ss_pred             ECCCCccccc-----------------------eec----CcccccceECCCCCEEEEEE-C-CeEEEEeCCCCCcEEEe
Confidence            9974322000                       001    13678899999999999985 5 49999999988765543


Q ss_pred             e--cCCCe-----------------EEEEEcCCCCEEEEEecCC----------------------------------eE
Q 018806          252 R--GFGGL-----------------SILKWSPTGDYFFAAKFDG----------------------------------TF  278 (350)
Q Consensus       252 ~--~~~~v-----------------~~~~~sp~g~~l~~~~~d~----------------------------------~v  278 (350)
                      .  +...+                 .+++|||||++|++++.|.                                  .|
T Consensus       147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence            2  11212                 4899999999999887652                                  78


Q ss_pred             EEEeCCCCcee---c------cccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEEE
Q 018806          279 YLWETNTWTSE---P------WSSTSGFVTGATWDPEGRMILLAFA---GSLTLGSIH  324 (350)
Q Consensus       279 ~iwd~~~~~~~---~------~~~~~~~v~~~~~s~~g~~l~~~~~---~~~~~~~~~  324 (350)
                      ++||+.+++..   .      +..+...+.+++||||++++++..+   +...++.++
T Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            99999987642   2      3357778999999999887766442   224577777

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=5.2e-18  Score=162.29  Aligned_cols=206  Identities=15%  Similarity=0.182  Sum_probs=138.7

Q ss_pred             CeeEEEEecCCCEEEEEEC---------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEE
Q 018806          101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  171 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw  171 (350)
                      .+.+++|||||++||+++.         ++.|++||+..  ++.....  .....+..++|||||+.++++ .++.|++|
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~--~l~~~~~~~~~SPDG~~la~~-~~~~i~~~  135 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGN--ELPRPIQYLCWSPVGSKLAYV-YQNNIYLK  135 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSS--CCCSSBCCEEECSSTTCEEEE-ETTEEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC--Cccccce--ecCcccccceECCCCCEEEEE-ECCeEEEE
Confidence            4889999999999999876         78999999864  3321001  112468999999998888776 57899999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCC--------CCceeeEEECCCCCeEEEEEeCCC--------
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS--------  235 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~g~~l~~~~~d~g--------  235 (350)
                      ++..+........+..            .    ..+.++.        .....+++|||||++|++++.+++        
T Consensus       136 ~~~~g~~~~l~~~~~~------------~----~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          136 QRPGDPPFQITFNGRE------------N----KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             SSTTSCCEECCCCCBT------------T----TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred             eCCCCCcEEEecCCCc------------C----CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence            9974433211111100            0    0011211        012358999999999999876521        


Q ss_pred             -------------------------eEEEEeCCCCCce---ee------eecCCCeEEEEEcCCCCEEEEEecC----Ce
Q 018806          236 -------------------------SFTIWDVAQGLGT---PI------RRGFGGLSILKWSPTGDYFFAAKFD----GT  277 (350)
Q Consensus       236 -------------------------~i~iwd~~~~~~~---~~------~~~~~~v~~~~~sp~g~~l~~~~~d----~~  277 (350)
                                               +|++||+.+++..   .+      ..+...+..++|+||++++++....    ..
T Consensus       200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~  279 (719)
T 1z68_A          200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV  279 (719)
T ss_dssp             ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred             ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence                                     7889999987642   22      2356678999999998877664432    25


Q ss_pred             EEEEe----CCCCceeccc-----cCCCCeE-----EEEEcCCCCEEEEE-E--CCCeEEEEEEeCC
Q 018806          278 FYLWE----TNTWTSEPWS-----STSGFVT-----GATWDPEGRMILLA-F--AGSLTLGSIHFAS  327 (350)
Q Consensus       278 v~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~s~~g~~l~~~-~--~~~~~~~~~~~~~  327 (350)
                      |++||    ..+++...+.     .+...+.     .++|+|||+.|++. +  ++...++.+++..
T Consensus       280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred             EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence            88999    8887775544     4566666     88999999977663 3  3345677766544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=1.8e-16  Score=137.79  Aligned_cols=194  Identities=12%  Similarity=0.027  Sum_probs=135.9

Q ss_pred             CeeEEEEecCCCEEEEE-ECCCeEEEEEccCCCCCceeEecCCC-----CCCeeEEEEeeCCCeEEEEecC---------
Q 018806          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDS-----QRDVKVLEWRPNGGRSLSVGCK---------  165 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~-s~d~~i~iw~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d---------  165 (350)
                      .+..++|+|+|++++++ ..++.|.+||+..  ++....+...+     ...+..++|+|+|+.+++++.+         
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  121 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  121 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence            36789999999876654 4689999999854  54444443232     2347899999999888887755         


Q ss_pred             ---CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC
Q 018806          166 ---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       166 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~  242 (350)
                         +.|.+||+........+                      ..+..+  ..+.+++|+|+|+ ++++  + +.|.+||.
T Consensus       122 ~~~~~i~~~d~~~~~~~~~~----------------------~~~~~~--~~~~~~~~s~dg~-l~~~--~-~~i~~~d~  173 (349)
T 1jmx_B          122 VKPPRLEVFSTADGLEAKPV----------------------RTFPMP--RQVYLMRAADDGS-LYVA--G-PDIYKMDV  173 (349)
T ss_dssp             ECCCEEEEEEGGGGGGBCCS----------------------EEEECC--SSCCCEEECTTSC-EEEE--S-SSEEEECT
T ss_pred             cCCCeEEEEECCCcccccee----------------------eeccCC--CcccceeECCCCc-EEEc--c-CcEEEEeC
Confidence               89999999742211111                      111222  3688999999999 5553  3 36999999


Q ss_pred             CCCCceeeeecC--------------------------------------------------------------------
Q 018806          243 AQGLGTPIRRGF--------------------------------------------------------------------  254 (350)
Q Consensus       243 ~~~~~~~~~~~~--------------------------------------------------------------------  254 (350)
                      .+++........                                                                    
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (349)
T 1jmx_B          174 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL  253 (349)
T ss_dssp             TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence            887654322111                                                                    


Q ss_pred             -CCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          255 -GGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       255 -~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                       ..+..++|+| +|++++++  ++.|++||+++++..........+.+++|+|+|++|++++ .+..+..|+...
T Consensus       254 ~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~v~v~d~~~  325 (349)
T 1jmx_B          254 TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG-TFNDLAVFNPDT  325 (349)
T ss_dssp             SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES-BSSEEEEEETTT
T ss_pred             CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec-CCCeEEEEeccc
Confidence             1345677889 99999888  8899999999988755444455678999999999998864 335666666644

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=1.1e-16  Score=153.49  Aligned_cols=206  Identities=14%  Similarity=0.181  Sum_probs=138.6

Q ss_pred             eeEEEEecCCCEEEEEECC---------CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEe
Q 018806          102 LQGVSWHQHKHIVAFISGS---------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  172 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd  172 (350)
                      ...++|||||++|++++.+         +.+.+||+.+  ++. ..+ ..+...+..++|||||+.++++ .++.|++|+
T Consensus        64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~-~~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~  138 (740)
T 4a5s_A           64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQL-ITE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKI  138 (740)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEE-CCS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEES
T ss_pred             ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC--CcE-EEc-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEE
Confidence            3568999999999998876         5667999864  432 223 3567789999999999888776 678999999


Q ss_pred             cCCCCCCceeec-ccccccceecCCCCCceEEeeeccCCC--------CCceeeEEECCCCCeEEEEEeCCC--------
Q 018806          173 PSYPGNAASVRS-GAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS--------  235 (350)
Q Consensus       173 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~g~~l~~~~~d~g--------  235 (350)
                      +..+.. ..+.. +..            .    ..+.++.        .+....+.|||||++|++.+.|.+        
T Consensus       139 ~~~~~~-~~lt~~g~~------------~----~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~  201 (740)
T 4a5s_A          139 EPNLPS-YRITWTGKE------------D----IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (740)
T ss_dssp             STTSCC-EECCSCCBT------------T----TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             CCCCce-EEEcCCCCc------------c----ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE
Confidence            874432 22211 100            0    0011111        023356899999999998764422        


Q ss_pred             ---------------------------eEEEEeCCC---C---Cceeeee------cCCCeEEEEEcCCCCEEEEEec--
Q 018806          236 ---------------------------SFTIWDVAQ---G---LGTPIRR------GFGGLSILKWSPTGDYFFAAKF--  274 (350)
Q Consensus       236 ---------------------------~i~iwd~~~---~---~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~--  274 (350)
                                                 +|++||+.+   +   +...+..      +...+..++|+|||+.++....  
T Consensus       202 ~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~  281 (740)
T 4a5s_A          202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI  281 (740)
T ss_dssp             ECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred             eecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC
Confidence                                       588899988   7   3334432      5567889999999997765533  


Q ss_pred             --CCeEEEEeCCCCc----e---ecc--ccCCCCeE-----EEEEcCCCCEEE-EEE--CCCeEEEEEEeCCCC
Q 018806          275 --DGTFYLWETNTWT----S---EPW--SSTSGFVT-----GATWDPEGRMIL-LAF--AGSLTLGSIHFASKP  329 (350)
Q Consensus       275 --d~~v~iwd~~~~~----~---~~~--~~~~~~v~-----~~~~s~~g~~l~-~~~--~~~~~~~~~~~~~~~  329 (350)
                        +..|++||+.+++    +   ..+  ..+...+.     .++|+|||+.|+ ..+  ++...++.++.....
T Consensus       282 ~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          282 QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence              2379999999987    3   222  33555544     789999999887 665  344677777766543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=2.4e-16  Score=138.39  Aligned_cols=203  Identities=10%  Similarity=0.072  Sum_probs=134.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEe--------------cC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVG--------------CK  165 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~--------------~d  165 (350)
                      .+..++|+|+|++|++++.+ .|.+|+++. +++..........+....++|+|+|+. +++++              .+
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~-~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKS-PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEE-TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECC-CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            47789999999999998888 899999861 244332221111133667899999875 33332              47


Q ss_pred             CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC-C
Q 018806          166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-Q  244 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~-~  244 (350)
                      +.+.+|++...+.....                     ...+.......+.+++|+|||++|+++...++.|++||+. +
T Consensus       119 g~v~v~~~~~~g~~~~~---------------------~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~  177 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKN---------------------VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             CEEEEEEECTTCCEEEE---------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEEccCCCCcCcce---------------------EeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence            89999999743321110                     1111111125789999999999988776533599999998 6


Q ss_pred             CCceee--ee---cCCCeEEEEEcCCCCEEEEEec-CCeEEEEeCC--CCcee----c---ccc----CCC------CeE
Q 018806          245 GLGTPI--RR---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN--TWTSE----P---WSS----TSG------FVT  299 (350)
Q Consensus       245 ~~~~~~--~~---~~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~--~~~~~----~---~~~----~~~------~v~  299 (350)
                      ++...+  ..   +...+..++|+|||++|++++. ++.|.+|+++  +++..    .   +..    +..      .+.
T Consensus       178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  257 (365)
T 1jof_A          178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA  257 (365)
T ss_dssp             SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred             CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence            765332  11   2456899999999999987765 6899999765  45532    1   111    121      478


Q ss_pred             EEE-EcCCCCEEEEEECCCe-----EEEEEEeC
Q 018806          300 GAT-WDPEGRMILLAFAGSL-----TLGSIHFA  326 (350)
Q Consensus       300 ~~~-~s~~g~~l~~~~~~~~-----~~~~~~~~  326 (350)
                      .++ |+|||++|+++..+..     .+..|++.
T Consensus       258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             cEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            999 9999999987763222     45555553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=4.3e-17  Score=156.38  Aligned_cols=194  Identities=17%  Similarity=0.223  Sum_probs=137.5

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCC-----CeeEEEEeeCCCeEEEEecC---------Cc
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR-----DVKVLEWRPNGGRSLSVGCK---------GG  167 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~~d---------~~  167 (350)
                      ..+++|+|||++|+++  |+.|++|++.+  ++....+ ..|..     ....++|||||+.+++++.+         +.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEY--GNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTT--CCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCC--CceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            5679999999999885  99999999964  4443333 34432     22458999999988887765         56


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                      +.+||+..+.. .                         .+..+. ..+..++|||||+.|+++. + +.|++||+.++..
T Consensus        94 ~~~~d~~~~~~-~-------------------------~l~~~~-~~~~~~~~SPdG~~la~~~-~-~~i~~~~~~~~~~  144 (740)
T 4a5s_A           94 YDIYDLNKRQL-I-------------------------TEERIP-NNTQWVTWSPVGHKLAYVW-N-NDIYVKIEPNLPS  144 (740)
T ss_dssp             EEEEETTTTEE-C-------------------------CSSCCC-TTEEEEEECSSTTCEEEEE-T-TEEEEESSTTSCC
T ss_pred             EEEEECCCCcE-E-------------------------EcccCC-CcceeeEECCCCCEEEEEE-C-CeEEEEECCCCce
Confidence            67999984321 1                         133333 5789999999999999985 5 4999999998876


Q ss_pred             eeeeec--CCCe-----------------EEEEEcCCCCEEEEEecCC--------------------------------
Q 018806          248 TPIRRG--FGGL-----------------SILKWSPTGDYFFAAKFDG--------------------------------  276 (350)
Q Consensus       248 ~~~~~~--~~~v-----------------~~~~~sp~g~~l~~~~~d~--------------------------------  276 (350)
                      ..+...  ...+                 ..+.|||||++||..+.|.                                
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~  224 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV  224 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence            554321  1112                 3489999999998875321                                


Q ss_pred             ----eEEEEeCCC---C---ceeccc------cCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEEEeCCCC
Q 018806          277 ----TFYLWETNT---W---TSEPWS------STSGFVTGATWDPEGRMILLAFA---GSLTLGSIHFASKP  329 (350)
Q Consensus       277 ----~v~iwd~~~---~---~~~~~~------~~~~~v~~~~~s~~g~~l~~~~~---~~~~~~~~~~~~~~  329 (350)
                          .|++||+.+   +   +...+.      .+...+..++|+|||+.++....   +...++.++.....
T Consensus       225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                588999998   7   444443      37778999999999997776542   23467777765443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=4e-17  Score=152.34  Aligned_cols=190  Identities=13%  Similarity=0.101  Sum_probs=135.4

Q ss_pred             CeeEEEEecCCCEEEEEEC---CCeEEEEEccCC-CCCceeEecCCCCCCeeEEEEeeCCCeEEE-EecCCcEEEEecCC
Q 018806          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDS-EGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSY  175 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~---d~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~  175 (350)
                      .|.+++|||| +++++++.   +...+||.++.. .+... .+.  ....+...+|+|+|+.++. ++.++.+.+||+..
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~  141 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDG  141 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-ccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence            5889999999 77777665   456678777541 23322 332  2234557799999876544 44456677999873


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC---CeEEEEeCCCCCceeeee
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRR  252 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---g~i~iwd~~~~~~~~~~~  252 (350)
                      +. ...                         +..+. .  .+++|||||++|++++.+.   +.|++||+.+++...+..
T Consensus       142 g~-~~~-------------------------l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~  192 (582)
T 3o4h_A          142 GG-LRE-------------------------LARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  192 (582)
T ss_dssp             TE-EEE-------------------------EEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC
T ss_pred             Cc-EEE-------------------------eecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec
Confidence            32 111                         11122 2  7899999999999877651   279999999998887877


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCC--eEEEEeCCCCceeccccCCCCeEEEE--------EcCCCCEEEEEE-CCCeEEE
Q 018806          253 GFGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGFVTGAT--------WDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       253 ~~~~v~~~~~sp~g~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~-~~~~~~~  321 (350)
                      +.+.+..++|||||++|+++..++  .|++||+++++...+..+...+..++        |+|||+.++++. ++...+|
T Consensus       193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~  272 (582)
T 3o4h_A          193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF  272 (582)
T ss_dssp             SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred             CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEE
Confidence            888899999999999999888888  89999999988875556666666677        999996666665 4434444


Q ss_pred             EE
Q 018806          322 SI  323 (350)
Q Consensus       322 ~~  323 (350)
                      .+
T Consensus       273 ~~  274 (582)
T 3o4h_A          273 ID  274 (582)
T ss_dssp             ET
T ss_pred             EE
Confidence            43

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=3.2e-16  Score=138.56  Aligned_cols=195  Identities=12%  Similarity=0.024  Sum_probs=138.4

Q ss_pred             EEEEecCCCEEEEEEC-CCe--EEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          104 GVSWHQHKHIVAFISG-STQ--VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       104 ~v~~sp~g~~la~~s~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ..+|||||++|++++. ++.  |.+||+.  +++. ..+..++...+..+.|+|||+.|+++..++.+++||+...... 
T Consensus        40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~-~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~-  115 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLN--TQVA-TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN-  115 (388)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETT--TCEE-EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE-
T ss_pred             CccCCCCCCEEEEEEcCCCCceEEEEeCC--CCce-EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce-
Confidence            3689999999999887 674  6666664  3443 3444456556667899999999999988899999999844321 


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeE--EECCCCCeEEEEE----------------------eCCCe
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDGRYLASAS----------------------YESSS  236 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g~~l~~~~----------------------~d~g~  236 (350)
                      .+                        ...+. ..+...  .++|+++.++...                      .+ +.
T Consensus       116 ~~------------------------~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  169 (388)
T 3pe7_A          116 VV------------------------YQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC-CR  169 (388)
T ss_dssp             EE------------------------EECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC-EE
T ss_pred             ee------------------------eechh-hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc-ce
Confidence            11                        11111 233333  3489998887432                      23 48


Q ss_pred             EEEEeCCCCCceeeeecCCCeEEEEEcC-CCCEEEEEecC------CeEEEEeCCCCceeccccCC--CCeEEEEEcCCC
Q 018806          237 FTIWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSSTS--GFVTGATWDPEG  307 (350)
Q Consensus       237 i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g  307 (350)
                      |++||+.+++...+..+...+..++|+| ||+.|+....+      ..|+++|..+++...+..+.  ..+..++|+|||
T Consensus       170 l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          170 LMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred             EEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence            9999999998877777778899999999 99999877653      37889998887776665554  357889999999


Q ss_pred             CEEEEEE-C-CC--eEEEEEEeCCC
Q 018806          308 RMILLAF-A-GS--LTLGSIHFASK  328 (350)
Q Consensus       308 ~~l~~~~-~-~~--~~~~~~~~~~~  328 (350)
                      +.|++.+ . +.  ..++.|++...
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             CEEEEEecCCCCCcceEEEEecCCC
Confidence            9887655 2 22  23777776544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=5.6e-16  Score=134.69  Aligned_cols=157  Identities=12%  Similarity=0.110  Sum_probs=112.1

Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCcee
Q 018806          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV  182 (350)
Q Consensus       104 ~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~  182 (350)
                      .++++++++++++++.++.|.+||...  ++....+..+....+..++|+|+|+.+++++. ++.|.+||+...+....+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCC--CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            456778899999999999999999854  55444443233236889999999877766654 699999998743322111


Q ss_pred             ecccccccceecCCCCCceEEeeeccCCC----CCceeeEEECCCCCeEEEEEeC-----------CCeEEEEeCCCCCc
Q 018806          183 RSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWGPDGRYLASASYE-----------SSSFTIWDVAQGLG  247 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~~d-----------~g~i~iwd~~~~~~  247 (350)
                      ..                        .+.    ...+..++|+|+|++|++++.+           .+.|.+||+.+++.
T Consensus        82 ~~------------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           82 NL------------------------SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             ES------------------------CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             Ec------------------------ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence            10                        110    1247889999999999988854           35999999988543


Q ss_pred             ---eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          248 ---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       248 ---~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                         .....+...+.+++|+|+|+ +++++  +.|++||..+++..
T Consensus       138 ~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~  179 (349)
T 1jmx_B          138 AKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYT  179 (349)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEE
T ss_pred             cceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCcee
Confidence               23334555788999999999 65543  44999999988763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=6.9e-16  Score=135.51  Aligned_cols=203  Identities=9%  Similarity=0.011  Sum_probs=134.0

Q ss_pred             eeEEEEecCCCE--EEEEE-------------CCCeEEEEEccCCCCCceeEec---CCCCCCeeEEEEeeCCCeEEEEe
Q 018806          102 LQGVSWHQHKHI--VAFIS-------------GSTQVIVRDYEDSEGKDACILT---SDSQRDVKVLEWRPNGGRSLSVG  163 (350)
Q Consensus       102 V~~v~~sp~g~~--la~~s-------------~d~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~  163 (350)
                      +..++|+|+|++  +++++             .++.+.+|+++. ++.....+.   ..+...+.+++|+|||+.++++.
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE-TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT-TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC-CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            445789999994  44542             689999999963 233322221   13456799999999988777666


Q ss_pred             c-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCC-CCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          164 C-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       164 ~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                      . ++.|++|++...+....                      ...+... +...+..++|+|||+++++++..+++|.+|+
T Consensus       164 ~~~~~v~~~~~~~~g~~~~----------------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVEL----------------------VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEE----------------------EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEE----------------------eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            5 58999999972111111                      1112211 1246899999999999988876546999997


Q ss_pred             CC--CCCcee----eeec-------CC------CeEEEE-EcCCCCEEEEEecC-C-----eEEEEeCC-CCceec----
Q 018806          242 VA--QGLGTP----IRRG-------FG------GLSILK-WSPTGDYFFAAKFD-G-----TFYLWETN-TWTSEP----  290 (350)
Q Consensus       242 ~~--~~~~~~----~~~~-------~~------~v~~~~-~sp~g~~l~~~~~d-~-----~v~iwd~~-~~~~~~----  290 (350)
                      ++  +++...    +...       ..      .+..++ |+|||++|+++..+ +     .|.+|+++ +++...    
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~  301 (365)
T 1jof_A          222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL  301 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred             EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee
Confidence            65  454321    1111       11      478899 99999998776543 3     89999996 566543    


Q ss_pred             cccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEEEeCC
Q 018806          291 WSSTSGFVTGATWDP---EGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       291 ~~~~~~~v~~~~~s~---~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ...+...+..++|+|   ||++|++++.++..+..|++..
T Consensus       302 ~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            222444567889999   8999998875444455555443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.72  E-value=1.9e-15  Score=130.61  Aligned_cols=151  Identities=11%  Similarity=0.117  Sum_probs=109.9

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCC-CeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      ++|++++.++.|.+||...  ++....+..++.. .+..++|+|+|+.+++++. ++.|.+||+...+....+....   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST---   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB---
T ss_pred             cEEEEcCCCCeEEEEECCC--CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC---
Confidence            4788999999999999854  5555555333322 4889999999887776666 5899999997443322211110   


Q ss_pred             cceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE------------eCCCeEEEEeCCCCCceeeeecCCCe
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS------------YESSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~------------~d~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                                       ...+ ...+..++|+|+|++|+++.            .+ +.|.+||+.+++..........+
T Consensus        77 -----------------~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~  137 (337)
T 1pby_B           77 -----------------PEER-VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP-TRVALYDAETLSRRKAFEAPRQI  137 (337)
T ss_dssp             -----------------TTEE-EECTTCEEECTTSSEEEEEEEEEEECSSCEEECC-CEEEEEETTTTEEEEEEECCSSC
T ss_pred             -----------------cccc-cccccceEECCCCCEEEEEecccccccccccccC-ceEEEEECCCCcEEEEEeCCCCc
Confidence                             0000 12577899999999998886            45 59999999988766555555678


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      ..++|+|+|++|+++  ++.|++||+.+++.
T Consensus       138 ~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~  166 (337)
T 1pby_B          138 TMLAWARDGSKLYGL--GRDLHVMDPEAGTL  166 (337)
T ss_dssp             CCEEECTTSSCEEEE--SSSEEEEETTTTEE
T ss_pred             ceeEECCCCCEEEEe--CCeEEEEECCCCcE
Confidence            889999999988877  68899999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.71  E-value=6e-15  Score=129.18  Aligned_cols=183  Identities=12%  Similarity=0.096  Sum_probs=125.0

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCC----C-ce-----eEecCCCCCCeeEEEEeeCCCeEEEEec-CCcE
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEG----K-DA-----CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGI  168 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~----~-~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v  168 (350)
                      .+.+++|+|+|++|++++ .++.+.+|+++...+    + ..     ......+......++|+|+|+.++++.. ++.|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            468899999999777665 488999999975443    2 11     1222345567889999999888877774 7999


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC-CCeEEEEeCC--CC
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVA--QG  245 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~g~i~iwd~~--~~  245 (350)
                      .+|++..+ ....+..                   ......+. .....++|+|||++|+++..+ ++.|.+|++.  ++
T Consensus       236 ~v~~~~~g-~~~~~~~-------------------~~~~~~~~-~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g  294 (361)
T 3scy_A          236 IAFRYADG-MLDEIQT-------------------VAADTVNA-QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG  294 (361)
T ss_dssp             EEEEEETT-EEEEEEE-------------------EESCSSCC-CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred             EEEEecCC-ceEEeEE-------------------EecCCCCC-CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence            99999722 1111110                   11122222 356899999999999877765 4699999986  44


Q ss_pred             Cceeee--ecCCCeEEEEEcCCCCEEEEEe-cCCeEEEE--eCCCCceeccc--cCCCCeEEEEEc
Q 018806          246 LGTPIR--RGFGGLSILKWSPTGDYFFAAK-FDGTFYLW--ETNTWTSEPWS--STSGFVTGATWD  304 (350)
Q Consensus       246 ~~~~~~--~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iw--d~~~~~~~~~~--~~~~~v~~~~~s  304 (350)
                      +...+.  .....+..++|+|+|++|++++ .++.|.+|  |.++++...+.  .+...+.+++|.
T Consensus       295 ~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          295 TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             cEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            433222  2245678999999999998887 57899996  55577764433  234567888885

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=3.5e-15  Score=141.29  Aligned_cols=202  Identities=10%  Similarity=0.042  Sum_probs=135.0

Q ss_pred             CeeEEEEecCCCEEEEE--ECCCeEEEEEccCCCCCceeEecCCCCCCee---------EEEEe--eCCCe-EEEEec-C
Q 018806          101 DLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSEGKDACILTSDSQRDVK---------VLEWR--PNGGR-SLSVGC-K  165 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~--s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~~~~s--p~~~~-l~~~~~-d  165 (350)
                      .|..++|++++-+++..  +.++...||... . +.....+. .+...+.         ...|+  |||+. ++++.. +
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~  101 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRR-A-DGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD  101 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEEC-T-TSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEEC-C-CCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence            48899999876555555  447889999973 2 33334443 4555666         67777  99888 665554 3


Q ss_pred             CcEEEEecCC-C-CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC---------
Q 018806          166 GGICIWAPSY-P-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---------  234 (350)
Q Consensus       166 ~~v~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---------  234 (350)
                      ..|.++++.. + +....+....                    ...+ ...+.+++|+|||+.|++++.+.         
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~~~~--------------------~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLTPVS--------------------AVGG-GLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECSCCC--------------------CSTT-CEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             CeEEEEcCCCCCCCCCEeccCCc--------------------cCCC-CccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            5555555430 1 2222211100                    0002 24778999999999999888761         


Q ss_pred             CeEEEEeCCC------CCceeee-ecCCCeEEEEEcCCCCEEEEEecC--------CeEEEEeCC-CC---ceeccc-cC
Q 018806          235 SSFTIWDVAQ------GLGTPIR-RGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETN-TW---TSEPWS-ST  294 (350)
Q Consensus       235 g~i~iwd~~~------~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d--------~~v~iwd~~-~~---~~~~~~-~~  294 (350)
                      .+|++||+.+      ++...+. .+...+..++|||||++|+.++.+        ..|++||+. ++   +...+. .+
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            2899999998      6666665 556778889999999999887755        379999999 56   444444 34


Q ss_pred             CCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEeC
Q 018806          295 SGFVTGATWDPEGRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       295 ~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~~  326 (350)
                      ...+..++|+|||++++++. ++...++.++..
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~  273 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA  273 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence            67899999999999555444 333477777653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=5.1e-15  Score=140.23  Aligned_cols=198  Identities=13%  Similarity=0.097  Sum_probs=135.2

Q ss_pred             EEEEe--cCCCE-EEEEEC-CCeEEEEEccCCCCCceeEecCC----CCCCeeEEEEeeCCCeEEEEecC----------
Q 018806          104 GVSWH--QHKHI-VAFISG-STQVIVRDYEDSEGKDACILTSD----SQRDVKVLEWRPNGGRSLSVGCK----------  165 (350)
Q Consensus       104 ~v~~s--p~g~~-la~~s~-d~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d----------  165 (350)
                      ...|+  |||++ |++++. +..|.+++++.........+...    |...+..++|+|||+.|++++.+          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            45565  99998 887654 34444444420010223334321    56678999999999999888876          


Q ss_pred             CcEEEEecCCC-----CCCceeecccccccceecCCCCCceEEeeecc-CCCCCceeeEEECCCCCeEEEEEeCC-----
Q 018806          166 GGICIWAPSYP-----GNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYES-----  234 (350)
Q Consensus       166 ~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~-----  234 (350)
                      ..|++||+...     +....                         +. .+. ..+..++|||||++|++++.+.     
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~-------------------------l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~  214 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRE-------------------------LSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPW  214 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEE-------------------------SSCSCS-SEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred             eEEEEEECCCCccccCCceeE-------------------------EEecCC-CcccCceECCCCCEEEEEECCCCCCCC
Confidence            57899998741     22111                         22 222 5778899999999999887652     


Q ss_pred             --CeEEEEeCC-CC---Cceeeeec-CCCeEEEEEcCCCCEEEEEecCC--eEEEEeCCCCceeccccCCCC--------
Q 018806          235 --SSFTIWDVA-QG---LGTPIRRG-FGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGF--------  297 (350)
Q Consensus       235 --g~i~iwd~~-~~---~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~--------  297 (350)
                        ..|++||+. ++   +...+..+ ...+..++|+|||++++++..++  .|++||+.+++...+..+...        
T Consensus       215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~  294 (662)
T 3azo_A          215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP  294 (662)
T ss_dssp             TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST
T ss_pred             CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc
Confidence              379999999 56   44445443 57899999999999777777777  777788777776555433222        


Q ss_pred             -eEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          298 -VTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       298 -v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                       +..++|+|++++++++..+...++.++...
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          295 GMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             TCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             cCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence             457899999998887766446777777653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=3.1e-15  Score=132.20  Aligned_cols=222  Identities=12%  Similarity=0.087  Sum_probs=139.2

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE--eeCCCeEEEEe----------------
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW--RPNGGRSLSVG----------------  163 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~----------------  163 (350)
                      +.++.|+|||++|++++.++.+++||+..  ++..... ..+...+....|  +|++..++...                
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~--g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVKDGRNLMRVDLAT--LEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             SSSCEECTTSSEEEEEETTTEEEEEETTT--CCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             ccceEEcCCCCEEEEEeCCCeEEEEECCC--Ccceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence            44678999999999999999999999964  4433333 234444544444  78877666432                


Q ss_pred             ------cCCcEEEEecCCCCCCceeec-------ccccc-cce-ecC---CC----CCceEEee-------eccCCCC-C
Q 018806          164 ------CKGGICIWAPSYPGNAASVRS-------GAASF-LGA-LSR---GP----GTRWTLVD-------FLRSQNG-E  213 (350)
Q Consensus       164 ------~d~~v~iwd~~~~~~~~~~~~-------~~~~~-~~~-~~~---~~----~~~~~~~~-------~~~~~~~-~  213 (350)
                            .+..|++||+..+. ...+..       ..+++ .+. +.+   ..    ...+..++       .+..+.. .
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~  238 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE  238 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE
T ss_pred             hhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc
Confidence                  23678899987543 222221       12233 222 111   11    11222221       1222221 2


Q ss_pred             ceeeEEECCCCCeEEEEEeCCC----eEEEEeCCCCCceeeeecCCC------eEEEEEcCCCCEEEEE---------ec
Q 018806          214 QITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGG------LSILKWSPTGDYFFAA---------KF  274 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g----~i~iwd~~~~~~~~~~~~~~~------v~~~~~sp~g~~l~~~---------~~  274 (350)
                      .+..++|+|||+.|++.+.+++    .|++||+.+++...+......      ...++|+|||+.|+..         ..
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  318 (388)
T 3pe7_A          239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN  318 (388)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred             ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence            4678899999999877665322    399999999876554432221      1223799999988754         34


Q ss_pred             CCeEEEEeCCCCceeccccCCC-----------CeEEEEEcCCCCEEEEEE--CCCeEEEEEEeCC
Q 018806          275 DGTFYLWETNTWTSEPWSSTSG-----------FVTGATWDPEGRMILLAF--AGSLTLGSIHFAS  327 (350)
Q Consensus       275 d~~v~iwd~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~  327 (350)
                      +..|++||+.+++...+..+..           .+.+++|+|||+.|++++  ++...+|.+++..
T Consensus       319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          319 DPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             CCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             CCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence            5689999999988877766655           578899999999999887  3446677776653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.63  E-value=7.8e-15  Score=129.77  Aligned_cols=224  Identities=14%  Similarity=0.110  Sum_probs=138.5

Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeE-------------------EEEeeCCCeEEEEe-
Q 018806          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-------------------LEWRPNGGRSLSVG-  163 (350)
Q Consensus       104 ~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~sp~~~~l~~~~-  163 (350)
                      .+.|+|||++|++++.++.+.+|++..  ++..... ..+......                   +.|+|+++.+++.. 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~--~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLET--LEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTT--CCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCC--CCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            478999999999999999999999864  3332222 223322222                   34566665554432 


Q ss_pred             ----cCCcEEEEecCCCCCCceeec-------ccccc-cce-ecC---CCC----CceEEee-------eccCCC-CCce
Q 018806          164 ----CKGGICIWAPSYPGNAASVRS-------GAASF-LGA-LSR---GPG----TRWTLVD-------FLRSQN-GEQI  215 (350)
Q Consensus       164 ----~d~~v~iwd~~~~~~~~~~~~-------~~~~~-~~~-~~~---~~~----~~~~~~~-------~~~~~~-~~~v  215 (350)
                          .+..|++||+..+.. ..+..       ..+++ .+. +.+   ...    ..+..++       .+..+. ...+
T Consensus       162 ~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  240 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGEL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC  240 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred             ccCCCcceEEEEECCCCcE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence                346788999874432 22211       12222 121 211   111    1222222       111111 1246


Q ss_pred             eeEEECCCCCeEEEEEeCC----CeEEEEeCCCCCceeeeecCCCeEEEEEcC-CCCEEEEEe----------------c
Q 018806          216 TALSWGPDGRYLASASYES----SSFTIWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAK----------------F  274 (350)
Q Consensus       216 ~~~~~sp~g~~l~~~~~d~----g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~----------------~  274 (350)
                      ..++|+|+|++|++++.++    +.|++||+.+++...+..... .. +.|+| +|+++++++                .
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            7789999999988876542    249999999887655543332 33 89999 999888754                2


Q ss_pred             CCeEEEEeCCCCceeccccCCC-----------CeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCCCCCCCc
Q 018806          275 DGTFYLWETNTWTSEPWSSTSG-----------FVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLD  333 (350)
Q Consensus       275 d~~v~iwd~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~~~~~~~  333 (350)
                      +..|++||+.+++...+..+..           .+..++|+|||+.|+++++  +...++.+++......+.
T Consensus       319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          319 DPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE  390 (396)
T ss_dssp             CCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred             CCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence            4789999999888766655544           2567899999999988873  446788888876665444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=8.7e-14  Score=132.82  Aligned_cols=197  Identities=10%  Similarity=0.071  Sum_probs=136.0

Q ss_pred             CeeEEEEecCCCEEEEEECCC-----eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCc--------
Q 018806          101 DLQGVSWHQHKHIVAFISGST-----QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--------  167 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--------  167 (350)
                      .+.+++|||||++||+++.++     .|++||+..  ++...... .+ ..+..++|+|||+.|+++..++.        
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t--g~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG--AKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT--TEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC--CCCCcccc-cC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            588999999999999876543     899999964  44333222 12 23678999999999999887754        


Q ss_pred             --------EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-----CC
Q 018806          168 --------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----ES  234 (350)
Q Consensus       168 --------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-----d~  234 (350)
                              |++|++..+.....+                     ......+ ...+..+.|+|||++|+..+.     + 
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~---------------------v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~-  258 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDIL---------------------CAEFPDE-PKWMGGAELSDDGRYVLLSIREGCDPV-  258 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEE---------------------EECCTTC-TTCEEEEEECTTSCEEEEEEECSSSSC-
T ss_pred             cccCCCCEEEEEECCCCcccceE---------------------EeccCCC-CeEEEEEEEcCCCCEEEEEEEccCCCc-
Confidence                    889998743321111                     1111112 245788999999999998775     4 


Q ss_pred             CeEEEEeCCC------C--CceeeeecCCCeEEEEEcCCCCEEEEEecC----CeEEEEeCCCCce---eccccCCC--C
Q 018806          235 SSFTIWDVAQ------G--LGTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS---EPWSSTSG--F  297 (350)
Q Consensus       235 g~i~iwd~~~------~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----~~v~iwd~~~~~~---~~~~~~~~--~  297 (350)
                      ..|++||+.+      +  ....+..+...+.. .|+|+|+.|+..+..    ..|++||+.+++.   ..+..+..  .
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  337 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV  337 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence            4899999986      5  34455555555544 588999988766543    3699999988753   44555543  6


Q ss_pred             eEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          298 VTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      +..++|++++.++++.. ++...++.+++
T Consensus       338 ~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          338 LEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             EEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            88899997776666665 55567888876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.61  E-value=4.4e-15  Score=131.36  Aligned_cols=212  Identities=11%  Similarity=0.035  Sum_probs=135.1

Q ss_pred             eeEEEEecCCCEEEEEECC---CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      +.+++|||||++|++....   ..|.+|++..  ++ ...+...+......+.|+|||+.+++++.++.+++||+.... 
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~--~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~-  113 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET--QQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE-  113 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT--TE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCC--Cc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-
Confidence            5677899999999887653   3577777643  43 233333333233448899999999898888899999987433 


Q ss_pred             Cceeeccc--ccccce-ecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE-----eCCCeEEEEeCCCCCceee
Q 018806          179 AASVRSGA--ASFLGA-LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-----YESSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       179 ~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-----~d~g~i~iwd~~~~~~~~~  250 (350)
                      ...+....  ..+.+. +.+........         .....+.|+|+++.++...     .+ ..|++||+.+++...+
T Consensus       114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~---------~~~~~~~~spdg~~~~~~~~~~~~~~-~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          114 EQVIYTVDEEWKGYGTWVANSDCTKLVG---------IEILKRDWQPLTSWEKFAEFYHTNPT-CRLIKVDIETGELEVI  183 (396)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEE---------EEEEGGGCCCCCSHHHHHHHHHTCCC-EEEEEEETTTCCEEEE
T ss_pred             cEEEEecccccCCCCCEEEeccCCcccc---------ccccccccCCCCcceeeeeeccCCCc-ceEEEEECCCCcEEee
Confidence            22222211  000000 11100000000         0011246889999887653     44 4899999999887777


Q ss_pred             eecCCCeEEEEEcC-CCCEEEEEecC------CeEEEEeCCCCceeccccC--CCCeEEEEEcCCCCEEEEEE-C-CC--
Q 018806          251 RRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAF-A-GS--  317 (350)
Q Consensus       251 ~~~~~~v~~~~~sp-~g~~l~~~~~d------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~-~-~~--  317 (350)
                      ..+...+..+.|+| +|+.|+..+.+      ..|++||+.+++...+..+  ...+..++|+|||++|+++. . +.  
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            77778899999999 88877766543      4689999987776555443  23578899999999887775 2 22  


Q ss_pred             eEEEEEEeCC
Q 018806          318 LTLGSIHFAS  327 (350)
Q Consensus       318 ~~~~~~~~~~  327 (350)
                      ..++.|++..
T Consensus       264 ~~l~~~d~~~  273 (396)
T 3c5m_A          264 RVIYKANPET  273 (396)
T ss_dssp             EEEEEECTTT
T ss_pred             ceEEEEECCC
Confidence            2366666643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=1.5e-13  Score=120.39  Aligned_cols=201  Identities=7%  Similarity=-0.033  Sum_probs=131.8

Q ss_pred             EEEEecCCCEEEEEEC----------CCeEEEEEccCCCCCceeEecCC-----CCCCeeEEEEeeCCCeEEEEec--CC
Q 018806          104 GVSWHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVGC--KG  166 (350)
Q Consensus       104 ~v~~sp~g~~la~~s~----------d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~--d~  166 (350)
                      .++|+|||++|+++..          ++.|.+||..+  .+....+...     +......++|+|||++++++..  ++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t--~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~  131 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK--LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT  131 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT--CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC--CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence            7999999999998862          56799999853  4444444221     2345788999999988887764  48


Q ss_pred             cEEEEecCCCCCCce-eecccc-----cccc---eecCCCCCc-------------------------------------
Q 018806          167 GICIWAPSYPGNAAS-VRSGAA-----SFLG---ALSRGPGTR-------------------------------------  200 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~-~~~~~~-----~~~~---~~~~~~~~~-------------------------------------  200 (350)
                      .|.+||+...+.... +.....     .+..   .++.+.++.                                     
T Consensus       132 ~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          132 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             eEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            899999986544333 211110     0000   001111111                                     


Q ss_pred             -----------eEEeee----------cc--C----CC---CCceeeEEECCCCCeEEEEEe-C---------CCeEEEE
Q 018806          201 -----------WTLVDF----------LR--S----QN---GEQITALSWGPDGRYLASASY-E---------SSSFTIW  240 (350)
Q Consensus       201 -----------~~~~~~----------~~--~----~~---~~~v~~~~~sp~g~~l~~~~~-d---------~g~i~iw  240 (350)
                                 ...++.          +.  .    +.   ......++|+|+++.++.+.. +         .++|.+|
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence                       111110          00  0    00   001112789999888887654 1         1389999


Q ss_pred             eCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC--ceecc-ccCCCCeEEEEEcCCCC
Q 018806          241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW--TSEPW-SSTSGFVTGATWDPEGR  308 (350)
Q Consensus       241 d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~--~~~~~-~~~~~~v~~~~~s~~g~  308 (350)
                      |+.+++......... +.+++|+|||++|++++. ++|.+||..++  +.... .........++++|+|+
T Consensus       292 D~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          292 DTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999998766554444 999999999999998886 99999999999  77544 46677889999999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=9e-13  Score=113.87  Aligned_cols=222  Identities=9%  Similarity=-0.002  Sum_probs=140.1

Q ss_pred             CeeEEEEecCCCEEEEEECC------------------------CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC
Q 018806          101 DLQGVSWHQHKHIVAFISGS------------------------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG  156 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  156 (350)
                      .+.+++++|+|+++++...+                        +.|.+||..+  ++........+-.....++++|+|
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN--AEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT--CCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC--CeEEeccCCCccCCceEEEECCCC
Confidence            59999999999999887766                        4688998743  554444433445578999999998


Q ss_pred             CeEEEEecCCcEEEEecCCCC-CCceee--------cccccccceecCCC-CCc-----------eEEee-------ecc
Q 018806          157 GRSLSVGCKGGICIWAPSYPG-NAASVR--------SGAASFLGALSRGP-GTR-----------WTLVD-------FLR  208 (350)
Q Consensus       157 ~~l~~~~~d~~v~iwd~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~-----------~~~~~-------~~~  208 (350)
                      +.+++...++.|++|+..... ....+.        .........+++++ ++.           +..+.       .+.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~  182 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG  182 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence            755555557999999976321 222221        01111122233333 222           22111       111


Q ss_pred             CCC---------CCceeeEEECCC-CCeEEEEEeCCCeEEEEeCCCCCceeeee---cCCCeEEEEEcCCCCEEEEE---
Q 018806          209 SQN---------GEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAA---  272 (350)
Q Consensus       209 ~~~---------~~~v~~~~~sp~-g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~---  272 (350)
                      ...         ......++++|+ ++.+++...+ +.|++||..+++......   +...+..++|+| +..++..   
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~-~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN-GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT-TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC-CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            100         023788999999 5544444455 699999999777655442   345688999999 4333332   


Q ss_pred             ----ecCCeEEEEeCCCCceeccc----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          273 ----KFDGTFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       273 ----~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                          ..+..|++||..+++.....    .+...+..++++|+| .|+++..+...++.|+...
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCc
Confidence                33458999999999886543    456678999999999 5666665555666766654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=1.2e-12  Score=111.23  Aligned_cols=217  Identities=9%  Similarity=-0.010  Sum_probs=138.8

Q ss_pred             CeeEEEEecCCC-EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ...+++|+|+|+ +++++..++.|..|+.+.  +  ...+ ..+...+.+++++|+|+.+++...++.|.+||...+...
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDG--Q--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTS--C--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCC--C--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            367899999998 677777889999999853  3  3333 245677999999999765544444689999998644322


Q ss_pred             ceeec---ccccccceecCCCCCceEE-------------------------ee--------eccCCCCCceeeEEECCC
Q 018806          180 ASVRS---GAASFLGALSRGPGTRWTL-------------------------VD--------FLRSQNGEQITALSWGPD  223 (350)
Q Consensus       180 ~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~~--------~~~~~~~~~v~~~~~sp~  223 (350)
                      .....   ........+..++++.+.+                         +.        .+..+ ......++|+|+
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~-~~~~~gi~~s~d  182 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD-RVKPNGLAFLPS  182 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC-CSSEEEEEECTT
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecC-CCCCccEEECCC
Confidence            11110   0011112233333332211                         10        11112 235678999999


Q ss_pred             CCeEEEEEeCCCeEEEEeCC-CCCc---eeee-ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCe
Q 018806          224 GRYLASASYESSSFTIWDVA-QGLG---TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV  298 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~-~~~~---~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v  298 (350)
                      |+.+++.+.+ +.|.+|++. .+..   .... .+...+..++++++|+++++.  ++.|.+||.+......+..+.. +
T Consensus       183 g~~lv~~~~~-~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~  258 (296)
T 3e5z_A          183 GNLLVSDTGD-NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-T  258 (296)
T ss_dssp             SCEEEEETTT-TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-C
T ss_pred             CCEEEEeCCC-CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-c
Confidence            9999555555 699999987 4443   2222 234556789999999866655  7899999987433344444555 8


Q ss_pred             EEEEE-cCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          299 TGATW-DPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       299 ~~~~~-s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      ++++| +|+++.|++++.+  .++.++...+.
T Consensus       259 ~~~~f~~~d~~~L~v~t~~--~l~~~~~~~~~  288 (296)
T 3e5z_A          259 SNLCFGGPEGRTLYMTVST--EFWSIETNVRG  288 (296)
T ss_dssp             CEEEEESTTSCEEEEEETT--EEEEEECSCCB
T ss_pred             eeEEEECCCCCEEEEEcCC--eEEEEEccccc
Confidence            99999 6899999888754  46666665443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=1.5e-12  Score=109.98  Aligned_cols=197  Identities=8%  Similarity=0.011  Sum_probs=130.0

Q ss_pred             cCeeEEEEe-cCCCEEEEEEC-CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806          100 VDLQGVSWH-QHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~s-p~g~~la~~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ..+.+++++ ++++++++... ++.|.+|+.+   ++....+...+...+..++++|+|+.+++...++.|.+||.. ..
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY---GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTT---SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECCC---CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence            357899995 67776665533 7899999943   554444433445678999999997655444456899999864 21


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec--CC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG--FG  255 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~--~~  255 (350)
                      ....+.                       ...+ ...+..++++|+|+.+++...+ +.|++||........+...  ..
T Consensus       153 ~~~~~~-----------------------~~~~-~~~p~~i~~~~~g~l~v~~~~~-~~i~~~~~~g~~~~~~~~~g~~~  207 (286)
T 1q7f_A          153 VLHKFG-----------------------CSKH-LEFPNGVVVNDKQEIFISDNRA-HCVKVFNYEGQYLRQIGGEGITN  207 (286)
T ss_dssp             EEEEEE-----------------------CTTT-CSSEEEEEECSSSEEEEEEGGG-TEEEEEETTCCEEEEESCTTTSC
T ss_pred             EEEEeC-----------------------CCCc-cCCcEEEEECCCCCEEEEECCC-CEEEEEcCCCCEEEEEccCCccC
Confidence            111100                       0122 2468899999999877666667 5999999854322222222  25


Q ss_pred             CeEEEEEcCCCCEEEEEecCC-eEEEEeCCCCceeccccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          256 GLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~-~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .+..++++++|+++++...++ .|++||........+..+  ...+.+++++|+|+++++ .. +..+..|++..
T Consensus       208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~-~~~v~v~~~~~  280 (286)
T 1q7f_A          208 YPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SK-DYRLYIYRYVQ  280 (286)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET-TTEEEEEECSC
T ss_pred             CCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CC-CCeEEEEEccc
Confidence            688999999999888887775 999999654333333333  234789999999986665 42 34566666543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=4.4e-13  Score=127.66  Aligned_cols=198  Identities=12%  Similarity=0.053  Sum_probs=133.2

Q ss_pred             cCeeEEEEecCCCEEEEEE-----CCCeEEEEEccCCCCCce-eEecCCCCCCeeEEEEeeCCCeEEEEecCCc------
Q 018806          100 VDLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGG------  167 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s-----~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~------  167 (350)
                      ..+.+++|||||++||.+.     .+..|++||+.+  ++.. .... . ......++|+|||+.|++++.+..      
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t--g~~~~~~~~-~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS--GEWSKVDVI-E-GGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT--CCBCSSCCB-S-CCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC--CCCcCCccc-C-cccccceEEecCCCEEEEEEecCCCCCccc
Confidence            3589999999999999643     346899999965  4332 1111 1 111268999999999999888755      


Q ss_pred             -------EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-C--eE
Q 018806          168 -------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-S--SF  237 (350)
Q Consensus       168 -------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-g--~i  237 (350)
                             |++|++..+.....                     ++.....+. ..+..+.|||||++|++.+.++ +  .|
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~---------------------lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~l  254 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDT---------------------VVHERTGDP-TTFLQSDLSRDGKYLFVYILRGWSENDV  254 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCE---------------------EEECCCCCT-TCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred             cCCCCCEEEEEECCCCchhce---------------------EEEecCCCC-EEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence                   99999874432111                     111112222 4688999999999999887662 1  67


Q ss_pred             EEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec----CCeEEEEeCCCCce---eccccC--CCCeEEEEEcCCCC
Q 018806          238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTWTS---EPWSST--SGFVTGATWDPEGR  308 (350)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~----d~~v~iwd~~~~~~---~~~~~~--~~~v~~~~~s~~g~  308 (350)
                      ++|+..+++...+..+...+....| ++|. ++..+.    ++.|++||+.+++.   ..+..+  ...+..++|+ ++.
T Consensus       255 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~  331 (695)
T 2bkl_A          255 YWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH  331 (695)
T ss_dssp             EEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred             EEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence            7777766766667766666666667 6777 544443    57999999988763   444433  4457888998 566


Q ss_pred             EEEEEE-CCCeEEEEEEeC
Q 018806          309 MILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       309 ~l~~~~-~~~~~~~~~~~~  326 (350)
                      ++++.. ++...++.+++.
T Consensus       332 lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          332 LSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             EEEEEEETTEEEEEEEETT
T ss_pred             EEEEEEECCEEEEEEEeCC
Confidence            666555 555777777754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.56  E-value=3e-13  Score=117.55  Aligned_cols=181  Identities=16%  Similarity=0.232  Sum_probs=116.5

Q ss_pred             cCeeEEEEecCCCEEEEEECC---Ce--EEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC---------
Q 018806          100 VDLQGVSWHQHKHIVAFISGS---TQ--VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------  165 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d---~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------  165 (350)
                      ..+..++|||||++||+++.+   +.  |.+|++.  +++..... . +.. +..++|+|||+.+++++.+         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~--~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE--TLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT--TTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC--CCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            347889999999999988754   44  5555553  34433322 2 233 9999999999888887643         


Q ss_pred             ------------------CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeE
Q 018806          166 ------------------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  227 (350)
Q Consensus       166 ------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  227 (350)
                                        ..|++||+..+..                         ...+..  . .+..++|+||| .+
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-------------------------~~~l~~--~-~~~~~~~spdg-~~  184 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-------------------------IEEFEK--P-RFSSGIWHRDK-IV  184 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEE-------------------------EEEEEE--E-TTCEEEEETTE-EE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeE-------------------------EeeecC--C-CcccccCCCCe-EE
Confidence                              4566777652211                         011211  1 56789999999 66


Q ss_pred             EEEEeCC--------CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC--------CeEEEEeCCCCceecc
Q 018806          228 ASASYES--------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPW  291 (350)
Q Consensus       228 ~~~~~d~--------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--------~~v~iwd~~~~~~~~~  291 (350)
                      +++..+.        ..|.++|  +++...+..+ ..+..+  +|||++|+.++.+        ..|++||  +++...+
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l  257 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI  257 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred             EEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence            6664431        1455566  5555555555 445444  9999999877644        3788888  5665544


Q ss_pred             c-cCCCCeEE-EEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          292 S-STSGFVTG-ATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       292 ~-~~~~~v~~-~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      . .+...+.. +.|+ || +++++. ++...+| ++
T Consensus       258 ~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          258 LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            4 44667876 9999 88 666665 5556677 66

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=2.4e-13  Score=118.59  Aligned_cols=173  Identities=10%  Similarity=0.001  Sum_probs=127.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCC---------CCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE---------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  171 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~---------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw  171 (350)
                      .++.+++++...++++|+.++ +.+|++....         .+.....  .+.. |+.++|  |+..++++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            699999999999999999885 6679874311         1111222  3556 999999  76666665 88999999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR  251 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~  251 (350)
                      |+........                         ...+. ..+.++.+.+.  .+++++.| |.|.+||+..+....  
T Consensus       112 dv~sl~~~~~-------------------------~~~~~-~~v~~i~~~~p--~~av~~~d-G~L~v~dl~~~~~~~--  160 (388)
T 1xip_A          112 DLEELSEFRT-------------------------VTSFE-KPVFQLKNVNN--TLVILNSV-NDLSALDLRTKSTKQ--  160 (388)
T ss_dssp             ESSSTTCEEE-------------------------EEECS-SCEEEEEECSS--EEEEEETT-SEEEEEETTTCCEEE--
T ss_pred             EchhhhccCc-------------------------cceee-cceeeEEecCC--CEEEEECC-CCEEEEEccCCcccc--
Confidence            9984432111                         12222 45777777654  38888888 799999999887654  


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce---ecc------c---cCCCCeEEEEEcCCCCEEEEEE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPW------S---STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~---~~~------~---~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                       ....|.+++|||+|  ++.|..||++++|+.+.++.   ..+      .   .|...|.++.|.++++++++-.
T Consensus       161 -~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          161 -LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             -EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             -ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence             34689999999999  67888999999999988773   222      2   3678899999999999988643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.54  E-value=9.9e-12  Score=107.32  Aligned_cols=223  Identities=8%  Similarity=0.048  Sum_probs=138.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC----CcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~  176 (350)
                      .+.+++|+++|++++++..++.|.+|+.+.  ++... +...+...+.+++|+|+|+.+++...+    +.|.+||....
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~--~~~~~-~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPET--KEIKR-PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEE-EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCC--CcEEE-EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            468899999999777778889999999853  33322 222456789999999997655554444    58999998743


Q ss_pred             CCCceeec-ccccccceecCCCCCceEE--------------eee---------ccCCCCCceeeEEECCCCCeEEEEEe
Q 018806          177 GNAASVRS-GAASFLGALSRGPGTRWTL--------------VDF---------LRSQNGEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       177 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~---------~~~~~~~~v~~~~~sp~g~~l~~~~~  232 (350)
                      .....+.. ........+..++++.+.+              +..         +... ...+..++|+|+|+.|+.+..
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~  201 (333)
T 2dg1_A          123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTET  201 (333)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEEEEEEG
T ss_pred             EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceEECCCCCEEEEEeC
Confidence            32211111 1111122233333322111              110         0001 124678999999997766554


Q ss_pred             CCCeEEEEeCCC-CCcee-----ee-ec--CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCC------CC
Q 018806          233 ESSSFTIWDVAQ-GLGTP-----IR-RG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS------GF  297 (350)
Q Consensus       233 d~g~i~iwd~~~-~~~~~-----~~-~~--~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~  297 (350)
                      .++.|.+||+.+ +....     .. ..  ...+..++++++|+++++...++.|.+||.+......+....      ..
T Consensus       202 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~  281 (333)
T 2dg1_A          202 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLR  281 (333)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCB
T ss_pred             CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccC
Confidence            326999999964 33211     11 11  136778999999998887777899999998533333333222      26


Q ss_pred             eEEEEEcCCCCEEEEEECC-----CeEEEEEEeCC
Q 018806          298 VTGATWDPEGRMILLAFAG-----SLTLGSIHFAS  327 (350)
Q Consensus       298 v~~~~~s~~g~~l~~~~~~-----~~~~~~~~~~~  327 (350)
                      +.+++|+|||+.|++++..     ...++.++...
T Consensus       282 ~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~  316 (333)
T 2dg1_A          282 STHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA  316 (333)
T ss_dssp             CCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             cceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence            8899999999888776633     35677777653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.53  E-value=7.3e-12  Score=105.75  Aligned_cols=192  Identities=9%  Similarity=0.047  Sum_probs=130.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-----CCCCCeeEEEEe-eCCCeEEEEec--CCcEEEEe
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWR-PNGGRSLSVGC--KGGICIWA  172 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~s-p~~~~l~~~~~--d~~v~iwd  172 (350)
                      .+.+++++++|+++++...++.|.+|+.+   +.....+..     ++...+..+++. ++ ..++++..  ++.|++||
T Consensus        31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEEC
T ss_pred             CCceEEECCCCCEEEEECCCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEEEEC
Confidence            48899999999988887889999999974   333333321     233568899995 55 55555553  78999999


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR  252 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~  252 (350)
                      .. ....                         ..+.......+.+++++|+|+.+++...+ +.|.+||... +......
T Consensus       107 ~~-g~~~-------------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~g-~~~~~~~  158 (286)
T 1q7f_A          107 QY-GQFV-------------------------RKFGATILQHPRGVTVDNKGRIIVVECKV-MRVIIFDQNG-NVLHKFG  158 (286)
T ss_dssp             TT-SCEE-------------------------EEECTTTCSCEEEEEECTTSCEEEEETTT-TEEEEECTTS-CEEEEEE
T ss_pred             CC-CcEE-------------------------EEecCccCCCceEEEEeCCCCEEEEECCC-CEEEEEcCCC-CEEEEeC
Confidence            43 2211                         11111112468899999999876666556 5999999653 3333332


Q ss_pred             ---cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          253 ---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       253 ---~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                         +...+..++++++|+++++...++.|++||........+...  ...+..++++++|+++++...+...+..++
T Consensus       159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence               335688999999999777777789999999865433333322  357899999999987765543322555554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.49  E-value=1.2e-11  Score=118.11  Aligned_cols=203  Identities=10%  Similarity=-0.006  Sum_probs=139.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCe----------------EEEEEccCCCCCceeEecC-CCCCCeeEEEEeeCCCeEEEEe
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQ----------------VIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVG  163 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~----------------i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~  163 (350)
                      .+.+++|+|||+.|++++.++.                |++|++.+........... .+...+..+.|+|||+.+++.+
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            3678999999999999988765                9999986432222222221 2455688999999999888876


Q ss_pred             c-----CCcEEEEecCC------CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe
Q 018806          164 C-----KGGICIWAPSY------PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       164 ~-----d~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  232 (350)
                      .     +..+++||+..      +...                        ...+..+. ..+.. .|+|+|+.|+..+.
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~------------------------~~~l~~~~-~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILK------------------------WVKLIDNF-EGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCC------------------------CEEEECSS-SSCEE-EEEEETTEEEEEEC
T ss_pred             EccCCCccEEEEEECcccccccCCccc------------------------eEEeeCCC-CcEEE-EEeccCCEEEEEEC
Confidence            5     46789999874      1100                        11122232 23333 58899999888776


Q ss_pred             CC---CeEEEEeCCCCCc---eeeeecCC--CeEEEEEcCCCCEEEEEecCC--eEEEEeCCCCce-eccccCCCCeEEE
Q 018806          233 ES---SSFTIWDVAQGLG---TPIRRGFG--GLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTS-EPWSSTSGFVTGA  301 (350)
Q Consensus       233 d~---g~i~iwd~~~~~~---~~~~~~~~--~v~~~~~sp~g~~l~~~~~d~--~v~iwd~~~~~~-~~~~~~~~~v~~~  301 (350)
                      .+   +.|.+||+.++..   ..+..+..  .+..++|++++.++++...++  .|++||+.+++. ..+..+.+.+..+
T Consensus       306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~  385 (710)
T 2xdw_A          306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY  385 (710)
T ss_dssp             TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred             CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEE
Confidence            42   3799999988752   44555543  577899998787888888887  467778867764 4555567778899


Q ss_pred             EEcCCCCEEEEEE---CCCeEEEEEEeCCCC
Q 018806          302 TWDPEGRMILLAF---AGSLTLGSIHFASKP  329 (350)
Q Consensus       302 ~~s~~g~~l~~~~---~~~~~~~~~~~~~~~  329 (350)
                      +++|+++.|+++.   .....++.+++....
T Consensus       386 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          386 SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            9999998777654   223578888875433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=1.1e-11  Score=103.69  Aligned_cols=195  Identities=8%  Similarity=0.008  Sum_probs=129.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+.+++++++|+++++.. ++.|.+|+.+.   .....+.......+..++++++|..+++...++.|.+|+......  
T Consensus        68 ~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~---~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--  141 (270)
T 1rwi_B           68 QPQGLAVDGAGTVYVTDF-NNRVVTLAAGS---NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--  141 (270)
T ss_dssp             SCCCEEECTTCCEEEEET-TTEEEEECTTC---SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--
T ss_pred             CcceeEECCCCCEEEEcC-CCEEEEEeCCC---ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--
Confidence            578899999999665544 88899999753   222223222335789999999976444444568899996542111  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSI  259 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~  259 (350)
                      ...                       .... ...+.+++++++|+.+++...+ +.|.+||.......... .+...+..
T Consensus       142 ~~~-----------------------~~~~-~~~p~~i~~~~~g~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~~  196 (270)
T 1rwi_B          142 TVL-----------------------PFTG-LNDPDGVAVDNSGNVYVTDTDN-NRVVKLEAESNNQVVLPFTDITAPWG  196 (270)
T ss_dssp             EEC-----------------------CCCS-CCSCCCEEECTTCCEEEEEGGG-TEEEEECTTTCCEEECCCSSCCSEEE
T ss_pred             Eee-----------------------cccc-CCCceeEEEeCCCCEEEEECCC-CEEEEEecCCCceEeecccCCCCceE
Confidence            000                       0111 1367889999999866655556 59999998876544322 22366889


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ++++++|.++++...++.|.+||..+....... .+...+.+++++++|+ |+++..+...+..++...
T Consensus       197 i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          197 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCG
T ss_pred             EEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCC
Confidence            999999977777767889999999776543332 2335689999999998 444554445666665543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.47  E-value=3.1e-12  Score=111.12  Aligned_cols=180  Identities=13%  Similarity=0.115  Sum_probs=119.2

Q ss_pred             eeEEEEecCCCEEEEEECC---------------------------CeEEEEEccCCCCCceeEecCCCCCCeeEEEEee
Q 018806          102 LQGVSWHQHKHIVAFISGS---------------------------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP  154 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d---------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp  154 (350)
                      +.+++|+|||+.|++++.+                           ..|.+|++..  ++....+..  . .+..++|+|
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~~--~-~~~~~~~sp  180 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFEK--P-RFSSGIWHR  180 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--TEEEEEEEE--E-TTCEEEEET
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--CeEEeeecC--C-CcccccCCC
Confidence            8899999999999988743                           4677788743  443233332  3 788999999


Q ss_pred             CCCeEEEEecCC-------cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeE
Q 018806          155 NGGRSLSVGCKG-------GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  227 (350)
Q Consensus       155 ~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  227 (350)
                      +| .++++..+.       ...||.+. .+....                         +..+  ..+..+  +|||++|
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~-------------------------l~~~--~~~~~~--spdg~~l  229 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEK-------------------------MFEK--VSFYAV--DSDGERI  229 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEE-------------------------EEEE--ESEEEE--EECSSCE
T ss_pred             Ce-EEEEEecccccccccccccEEEeC-CCceEE-------------------------eccC--cceeeE--CCCCCEE
Confidence            97 444443332       44566554 222111                         1111  233333  8999999


Q ss_pred             EEEEeCC-------CeEEEEeCCCCCceeeee-cCCCeEE-EEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCe
Q 018806          228 ASASYES-------SSFTIWDVAQGLGTPIRR-GFGGLSI-LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV  298 (350)
Q Consensus       228 ~~~~~d~-------g~i~iwd~~~~~~~~~~~-~~~~v~~-~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v  298 (350)
                      ++.+.+.       ..|.+||  +++...+.. +...+.. +.|+ +| ++++++.++.++|| +.+++...+..+...|
T Consensus       230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v  304 (347)
T 2gop_A          230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWI  304 (347)
T ss_dssp             EEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEE
T ss_pred             EEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeE
Confidence            8877541       3788888  555444443 3566775 8999 88 88889999999999 8766666666667789


Q ss_pred             EEEEEcCCCCEEEEEE-CCC-eEEEEEE
Q 018806          299 TGATWDPEGRMILLAF-AGS-LTLGSIH  324 (350)
Q Consensus       299 ~~~~~s~~g~~l~~~~-~~~-~~~~~~~  324 (350)
                      .+++|+|  ..++++. .+. ..+|.++
T Consensus       305 ~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          305 MGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            9999999  5665555 333 2677665

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=1.3e-12  Score=112.86  Aligned_cols=194  Identities=12%  Similarity=0.105  Sum_probs=133.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|.++.|++++..++..+.++.++.|.     +.....+. .+...+.+++|+|+|+.+++...++.|.+||...... .
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~   79 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTIT-----AEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-K   79 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEE-----CEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-E
T ss_pred             ccceeeecCCccceeEEeecccCcccc-----cceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-E
Confidence            477788899888777777788888883     33333342 4556689999999976444445578999999873321 1


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC---CCeEEEEeCCCCCceeeee---cC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---SSSFTIWDVAQGLGTPIRR---GF  254 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---~g~i~iwd~~~~~~~~~~~---~~  254 (350)
                      .+                        ...+ ...+.+++++|+|+.+++...+   .+.|.+||..++....+..   ..
T Consensus        80 ~~------------------------~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           80 RP------------------------FVSH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             EE------------------------EECS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             EE------------------------eeCC-CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            11                        1112 2578999999999877765543   0389999998877653332   23


Q ss_pred             CCeEEEEEcCCCCEEEEEec------CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          255 GGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..+..++++|+|+++++...      .+.|+.+|.++++...+......+..++|+|+|+.|+++......++.++..
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            56889999999987776653      3567777777666654444444678999999999887776544567777664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.45  E-value=3.3e-11  Score=111.09  Aligned_cols=189  Identities=14%  Similarity=0.123  Sum_probs=136.5

Q ss_pred             cCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC--CCCCCceeeccc
Q 018806          109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS--YPGNAASVRSGA  186 (350)
Q Consensus       109 p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~--~~~~~~~~~~~~  186 (350)
                      |.+.++++...++.|.++|..+  ++.+..+.  ....+..+.|+|||+++++++.++.|.+||+.  .......     
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t--~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~-----  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGST--YEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-----  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTT--CCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-----
T ss_pred             CCceEEEEeCCCCeEEEEECCC--CeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE-----
Confidence            4445666667789999999854  55555553  33457799999999988888888999999984  2222222     


Q ss_pred             ccccceecCCCCCceEEeeeccCCCCCceeeEEEC----CCCCeEEEEEeCCCeEEEEeCCCCCceeeeec---------
Q 018806          187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRG---------  253 (350)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~---------  253 (350)
                                          +..  ......++|+    |||+++++++...+++.++|..+.+.......         
T Consensus       236 --------------------i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~  293 (567)
T 1qks_A          236 --------------------IKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE  293 (567)
T ss_dssp             --------------------EEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred             --------------------Eec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence                                221  1356799999    69999998887767999999988876543321         


Q ss_pred             ---CCCeEEEEEcCCCCEE-EEEecCCeEEEEeCCCCcee--ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          254 ---FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       254 ---~~~v~~~~~sp~g~~l-~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                         ...+..+..++++..+ +....+|.|.++|..+.+..  ...........+.|+|+|+++++++..+..+..++...
T Consensus       294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence               1257788889987655 45566799999999876542  22234456778999999999999986667788888775


Q ss_pred             C
Q 018806          328 K  328 (350)
Q Consensus       328 ~  328 (350)
                      .
T Consensus       374 ~  374 (567)
T 1qks_A          374 G  374 (567)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.2e-11  Score=118.49  Aligned_cols=197  Identities=13%  Similarity=0.071  Sum_probs=129.0

Q ss_pred             CeeEEEEecCCCEEEEEECC-----CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCc--------
Q 018806          101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--------  167 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--------  167 (350)
                      .+.+++|||||++||+++.+     ..|++||+..  ++......  +...+..++|+|| +.++++..++.        
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t--g~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD--GKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT--CCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC--CCCCCccC--CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            58899999999999987653     4699999864  44332211  1222467899999 99998887643        


Q ss_pred             ------EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC----CeE
Q 018806          168 ------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSF  237 (350)
Q Consensus       168 ------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~----g~i  237 (350)
                            |++|++..+.....+                     +.....+ ...+..+.|||||++|+..+.+.    ..|
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~l---------------------v~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l  296 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQP---------------------VFATPEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTV  296 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEE---------------------EECCTTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred             CCCCCEEEEEECCCCchhCEE---------------------EeccCCC-CeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence                  778887633211111                     1111112 13578999999999998887541    389


Q ss_pred             EEEeCCCC--C-ceeeeecCCCeEEEEEcCCCCEEEEEecC----CeEEEEeCCCC--ceeccc-cCCCCeEEEEEcCCC
Q 018806          238 TIWDVAQG--L-GTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTW--TSEPWS-STSGFVTGATWDPEG  307 (350)
Q Consensus       238 ~iwd~~~~--~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----~~v~iwd~~~~--~~~~~~-~~~~~v~~~~~s~~g  307 (350)
                      ++||+.++  + ...+..+........ +|+|+.|+..+.+    +.|++||+.++  +...+. .+...+.+++|+ ++
T Consensus       297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~  374 (741)
T 1yr2_A          297 HVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN  374 (741)
T ss_dssp             EEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred             EEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence            99999887  5 555655555555543 4899988877653    46999999885  334443 334456677887 44


Q ss_pred             CEEEEEE-CCCeEEEEEEeC
Q 018806          308 RMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       308 ~~l~~~~-~~~~~~~~~~~~  326 (350)
                      .++++.. ++...++.+++.
T Consensus       375 ~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          375 RLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             EEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEEEECCEEEEEEEeCC
Confidence            5555444 555677777754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.42  E-value=8.3e-12  Score=118.83  Aligned_cols=191  Identities=9%  Similarity=0.080  Sum_probs=128.7

Q ss_pred             ecCCCEEEEEECCC---eEEEEEccCCCCCceeEec-----CCCCCCeeEEEEeeCCCeEEEEec-----CCcEEEEecC
Q 018806          108 HQHKHIVAFISGST---QVIVRDYEDSEGKDACILT-----SDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPS  174 (350)
Q Consensus       108 sp~g~~la~~s~d~---~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~  174 (350)
                      +|+|++++....++   .-.||..+...+.....+.     .+|...+..++|||||++++++..     +..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37999999877654   3456665433333322221     134557899999999988886544     2579999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCe-------------EEEEe
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-------------FTIWD  241 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~-------------i~iwd  241 (350)
                      .+.....   .                    .+.   ......++|+|||+.|++++.+. .             |++|+
T Consensus       156 tg~~~~~---~--------------------~~~---~~~~~~~~wspDg~~l~~~~~d~-~~~~~~~~~~~~~~v~~~~  208 (695)
T 2bkl_A          156 SGEWSKV---D--------------------VIE---GGKYATPKWTPDSKGFYYEWLPT-DPSIKVDERPGYTTIRYHT  208 (695)
T ss_dssp             TCCBCSS---C--------------------CBS---CCTTCCCEECTTSSEEEEEECCC-CTTSCGGGGGGGCEEEEEE
T ss_pred             CCCCcCC---c--------------------ccC---cccccceEEecCCCEEEEEEecC-CCCCccccCCCCCEEEEEE
Confidence            5442100   0                    011   11226899999999999998873 4             99999


Q ss_pred             CCCCCce--eeee---cCCCeEEEEEcCCCCEEEEEecCC----eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEE
Q 018806          242 VAQGLGT--PIRR---GFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       242 ~~~~~~~--~~~~---~~~~v~~~~~sp~g~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  312 (350)
                      +.++...  .+..   +...+..+.|+|||++|+..+.++    .|++|+..+++...+..+...+....| ++|+ +++
T Consensus       209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~  286 (695)
T 2bkl_A          209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYV  286 (695)
T ss_dssp             TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEE
T ss_pred             CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEE
Confidence            9988632  3332   235688999999999998777665    788888777777667766666777777 6777 665


Q ss_pred             EEC---CCeEEEEEEeCC
Q 018806          313 AFA---GSLTLGSIHFAS  327 (350)
Q Consensus       313 ~~~---~~~~~~~~~~~~  327 (350)
                      .++   ....++.+++..
T Consensus       287 ~s~~~~~~~~l~~~d~~~  304 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAK  304 (695)
T ss_dssp             EECTTCTTCEEEEEBTTB
T ss_pred             EECCCCCCCEEEEEeCCC
Confidence            554   346788877654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.42  E-value=2.8e-11  Score=105.87  Aligned_cols=66  Identities=8%  Similarity=0.065  Sum_probs=48.7

Q ss_pred             EEEcCCCCEEEEEec-----------CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          260 LKWSPTGDYFFAAKF-----------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ++|+|+++.++++..           .+.|.+||+.+++......... +.+++|+|||++|++++.  ..+..|+....
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence            688899888876543           3489999999998854333333 899999999999987765  45666665543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.42  E-value=7.7e-11  Score=101.64  Aligned_cols=194  Identities=8%  Similarity=-0.081  Sum_probs=130.4

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCC----CCCeeEEEEeeCCCeEEEEec--CCcEEEEec
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS----QRDVKVLEWRPNGGRSLSVGC--KGGICIWAP  173 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~--d~~v~iwd~  173 (350)
                      .....++++++++..++...++.|.+||..+  ++....+..+.    ......+++ . +++++++..  ++.|.++|.
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t--~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKT--YEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDT  159 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTT--TEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEET
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCC--CeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEEC
Confidence            4578999999995444433789999999854  44433333222    114567777 3 466666653  789999998


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC---------CCeEEEEeCCC
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---------SSSFTIWDVAQ  244 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---------~g~i~iwd~~~  244 (350)
                      ...+....                         +..  ......++++|+|+.++++..+         .+.|.++|..+
T Consensus       160 ~t~~~~~~-------------------------i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          160 ETDKVVDE-------------------------LTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             TTTEEEEE-------------------------EEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred             CCCeEEEE-------------------------EEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC
Confidence            84432222                         211  1345788999999876665543         14899999998


Q ss_pred             CCceeeeec--CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec--cccC-CCCeEEEEEcCCCCEEEEEE----C
Q 018806          245 GLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSST-SGFVTGATWDPEGRMILLAF----A  315 (350)
Q Consensus       245 ~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~--~~~~-~~~v~~~~~s~~g~~l~~~~----~  315 (350)
                      ++.......  ......++|+|++++|+++..  .|++||..+++...  +... ......++++|++..|+++.    .
T Consensus       213 ~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~  290 (328)
T 3dsm_A          213 FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ  290 (328)
T ss_dssp             TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred             CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccc
Confidence            876543332  236889999999999987754  89999999888632  2222 45789999999766677675    4


Q ss_pred             CCeEEEEEEeC
Q 018806          316 GSLTLGSIHFA  326 (350)
Q Consensus       316 ~~~~~~~~~~~  326 (350)
                      ....+..++..
T Consensus       291 ~~~~V~v~d~~  301 (328)
T 3dsm_A          291 QQGIVYRYSPQ  301 (328)
T ss_dssp             SEEEEEEECTT
T ss_pred             cCCEEEEECCC
Confidence            44566666654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.40  E-value=2.7e-10  Score=99.87  Aligned_cols=221  Identities=10%  Similarity=-0.050  Sum_probs=137.5

Q ss_pred             EEEEecCCCEEEEEE----------CCCeEEEEEccCCCCCceeEecCC------CCCCeeEEEEeeCCCeEEEEec--C
Q 018806          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--K  165 (350)
Q Consensus       104 ~v~~sp~g~~la~~s----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~--d  165 (350)
                      .+++||||++|+++.          .++.|.+||..+  .+....+..+      +......++|+|||++++++..  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC--CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence            899999999999876          367899999853  4433333222      0123458999999998888774  4


Q ss_pred             CcEEEEecCCCCCCce-eecccc------cccceecCCCCCceEEeeeccCCCC------------Cc-eeeEEECCCCC
Q 018806          166 GGICIWAPSYPGNAAS-VRSGAA------SFLGALSRGPGTRWTLVDFLRSQNG------------EQ-ITALSWGPDGR  225 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-v~~~~~sp~g~  225 (350)
                      +.|.++| ...+.... +.....      ....-+..+.++++..+.. .+...            .. .....+.+++.
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence            7899999 75554444 322111      0001123344555444433 22110            01 12235566666


Q ss_pred             eEEEEEeCCCeEEEEeCCCCCceeeee-------------cCCCeEEEEEcCCCCEEEEEec----------CCeEEEEe
Q 018806          226 YLASASYESSSFTIWDVAQGLGTPIRR-------------GFGGLSILKWSPTGDYFFAAKF----------DGTFYLWE  282 (350)
Q Consensus       226 ~l~~~~~d~g~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~----------d~~v~iwd  282 (350)
                      .++..+.. |.+.+.|+.+.....+..             .......+.++|+++.++++..          ++.|.++|
T Consensus       226 ~~~~~~~~-~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          226 RIVWPVYS-GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             EEEEEcCC-ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence            66655566 699999997653221110             1123445789999998877643          35899999


Q ss_pred             CCCCceeccccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEEeCCCC
Q 018806          283 TNTWTSEPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       283 ~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      ..+++............+++|+|||+ .++++..++..+..++.....
T Consensus       305 ~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          305 GLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            99998854444555689999999999 566555456677788776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=8.9e-11  Score=98.03  Aligned_cols=195  Identities=9%  Similarity=0.023  Sum_probs=128.2

Q ss_pred             CeeEEEEecCCCEEE-EEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la-~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ...+++++++|++++ +...++.|.+|+...  .. .......+...+.+++++++|. ++++..++.|.+||..... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~-~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--TG-TTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNN-Q   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSC-C
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCC--cc-cceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCce-E
Confidence            578999999999666 436788899998642  22 1222223345688999999976 4444448889999876221 1


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~  258 (350)
                      ..                         +.......+..++++++|+.+++...+ +.|.+|+..+....... .....+.
T Consensus       100 ~~-------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~  153 (270)
T 1rwi_B          100 TV-------------------------LPFDGLNYPEGLAVDTQGAVYVADRGN-NRVVKLAAGSKTQTVLPFTGLNDPD  153 (270)
T ss_dssp             EE-------------------------CCCCSCSSEEEEEECTTCCEEEEEGGG-TEEEEECTTCCSCEECCCCSCCSCC
T ss_pred             ee-------------------------eecCCcCCCcceEECCCCCEEEEECCC-CEEEEEECCCceeEeeccccCCCce
Confidence            11                         110112467899999999866665556 69999986655433222 2234678


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .++++++|+++++...++.|.+||..+....... .....+..++++++|..+ ++......+..++...
T Consensus       154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~-v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVY-VTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEE-EEETTTSCEEEECTTC
T ss_pred             eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEE-EEECCCCcEEEEcCCC
Confidence            8999999997777667889999999877654322 233678999999999554 4554444566666544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.39  E-value=8.8e-11  Score=101.29  Aligned_cols=195  Identities=8%  Similarity=0.017  Sum_probs=130.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~  179 (350)
                      ....+.+. +++..++...++.|.+||..+  ++....+.  .......+++++++ +++++. .++.|.+||.......
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINT--FKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTT--CCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcc--cEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEE
Confidence            35667774 345555555679999999854  55555553  34678999999996 666555 5799999998743322


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe--CCCeEEEEeCCCCCceeeeecCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--d~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                      ..+..+.                    ..+. ......+++  ++..++.+..  + +.|.++|..+++...........
T Consensus       119 ~~i~~g~--------------------~~~~-~~~p~~i~~--~~~~lyv~~~~~~-~~v~viD~~t~~~~~~i~~g~~p  174 (328)
T 3dsm_A          119 GYIECPD--------------------MDME-SGSTEQMVQ--YGKYVYVNCWSYQ-NRILKIDTETDKVVDELTIGIQP  174 (328)
T ss_dssp             EEEECTT--------------------CCTT-TCBCCCEEE--ETTEEEEEECTTC-CEEEEEETTTTEEEEEEECSSCB
T ss_pred             EEEEcCC--------------------cccc-CCCcceEEE--ECCEEEEEcCCCC-CEEEEEECCCCeEEEEEEcCCCc
Confidence            2211110                    0000 014566777  4555555553  5 59999999998766544444556


Q ss_pred             EEEEEcCCCCEEEEEecC----------CeEEEEeCCCCceeccccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          258 SILKWSPTGDYFFAAKFD----------GTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d----------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ..++++|+|++++++..+          +.|.++|..+++.......  ......++|+|+++.|+++..   .++.++.
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~  251 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPV  251 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEET
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEEC
Confidence            789999999977766554          7899999999887533222  346899999999999988754   5677776


Q ss_pred             CCC
Q 018806          326 ASK  328 (350)
Q Consensus       326 ~~~  328 (350)
                      ...
T Consensus       252 ~t~  254 (328)
T 3dsm_A          252 EAD  254 (328)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=1.7e-10  Score=98.09  Aligned_cols=186  Identities=12%  Similarity=0.055  Sum_probs=122.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC---CCCCeeEEEEeeCCCeEEEEecC---------Cc
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD---SQRDVKVLEWRPNGGRSLSVGCK---------GG  167 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d---------~~  167 (350)
                      ..+.+++++++|+++++ . ++.|.+||.+.  ++........   ....+..++++|+|+.+++....         ..
T Consensus        54 ~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           54 APVSSVALRQSGGYVAT-I-GTKFCALNWKE--QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             SCEEEEEEBTTSSEEEE-E-TTEEEEEETTT--TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CceEEEEECCCCCEEEE-E-CCeEEEEECCC--CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            35899999999996554 4 56788999853  3322222111   12357889999997755543222         23


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC--CCC
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV--AQG  245 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~--~~~  245 (350)
                      ..||.+...+....+.                         .. ......++|+|+++.|+.+....+.|.+|++  .++
T Consensus       130 ~~l~~~d~~g~~~~~~-------------------------~~-~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G  183 (297)
T 3g4e_A          130 GALYSLFPDHHVKKYF-------------------------DQ-VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG  183 (297)
T ss_dssp             EEEEEECTTSCEEEEE-------------------------EE-ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC
T ss_pred             cEEEEEECCCCEEEEe-------------------------ec-cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC
Confidence            4566555322211111                         11 1356789999999988766554369999987  455


Q ss_pred             Cce--e-ee---ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccCCCCeEEEEEc-CCCCEEEEEEC
Q 018806          246 LGT--P-IR---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWD-PEGRMILLAFA  315 (350)
Q Consensus       246 ~~~--~-~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s-~~g~~l~~~~~  315 (350)
                      ...  . +.   ...+....++++++|++.++...++.|..||.++++... +......+++++|. |+++.|++++.
T Consensus       184 ~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          184 QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            432  1 11   123567889999999877777778899999999888743 33445679999998 89998888763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.35  E-value=1.2e-09  Score=100.77  Aligned_cols=211  Identities=9%  Similarity=-0.047  Sum_probs=139.3

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEe----eCCCeEEEEec-CCcEEEEec
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR----PNGGRSLSVGC-KGGICIWAP  173 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~-d~~v~iwd~  173 (350)
                      +..+..+.|||||+++++++.++.|.+||+...+.+....+..  ......++|+    |||++++++.. ++++.|+|.
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~  273 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  273 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence            3467899999999999999999999999985223555555532  3346899999    69888888777 499999998


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee--e
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--R  251 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~--~  251 (350)
                      .+.+....+......               .+....|....+..+..++++..++....+.|.|.++|........+  .
T Consensus       274 ~t~~~~~~i~~~~~~---------------~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i  338 (567)
T 1qks_A          274 ETLEPKKIQSTRGMT---------------YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI  338 (567)
T ss_dssp             TTCCEEEEEECCEEC---------------TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred             CCCcEEEEEeccccc---------------cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence            754433332221000               00000121236788999998887777666668999999987643322  2


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccc------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          252 RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      ........+.|+|+|++++++. .++.|.++|+.+++.....      .|.+.-..+ ++|++..+.++. -++..+..+
T Consensus       339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi  417 (567)
T 1qks_A          339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI  417 (567)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred             eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence            2345577889999999987665 5789999999999874322      222212222 588866555443 344456666


Q ss_pred             EeCC
Q 018806          324 HFAS  327 (350)
Q Consensus       324 ~~~~  327 (350)
                      +...
T Consensus       418 d~~~  421 (567)
T 1qks_A          418 GTDP  421 (567)
T ss_dssp             ECCT
T ss_pred             cCCC
Confidence            6543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.35  E-value=5.7e-11  Score=113.89  Aligned_cols=191  Identities=9%  Similarity=0.003  Sum_probs=125.5

Q ss_pred             ecCCCEEEEEECCCe---EEEEEccCC---CCCceeE-----ecCCCCCCeeEEEEeeCCCeEEEEecC-----CcEEEE
Q 018806          108 HQHKHIVAFISGSTQ---VIVRDYEDS---EGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIW  171 (350)
Q Consensus       108 sp~g~~la~~s~d~~---i~iw~~~~~---~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~iw  171 (350)
                      +|+|++++....++.   -.+|..+..   .+.....     +..+|...+..++|||||++++++..+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389999998765543   556766533   2332222     122333468899999999988887664     359999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC-------------eEE
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-------------SFT  238 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g-------------~i~  238 (350)
                      |+..+.....                        .+  + ...+..++|+|| +.|++++.+..             .|+
T Consensus       195 dl~tg~~~~~------------------------~~--~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~  246 (741)
T 1yr2_A          195 GVADGKPLAD------------------------EL--K-WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW  246 (741)
T ss_dssp             ETTTCCEEEE------------------------EE--E-EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred             ECCCCCCCCc------------------------cC--C-CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence            9984432110                        00  0 112467899999 99998886632             389


Q ss_pred             EEeCCCCCc--eeeeecC---CCeEEEEEcCCCCEEEEEecCC-----eEEEEeCCCC--c-eeccccCCCCeEEEEEcC
Q 018806          239 IWDVAQGLG--TPIRRGF---GGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW--T-SEPWSSTSGFVTGATWDP  305 (350)
Q Consensus       239 iwd~~~~~~--~~~~~~~---~~v~~~~~sp~g~~l~~~~~d~-----~v~iwd~~~~--~-~~~~~~~~~~v~~~~~s~  305 (350)
                      +|++.++..  ..+....   ..+..+.|+|||++|+..+.++     .|++||+.++  + ...+..+...+.... +|
T Consensus       247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~  325 (741)
T 1yr2_A          247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG  325 (741)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred             EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence            999987763  2233222   3588999999999998776543     8999999887  5 555555555555554 48


Q ss_pred             CCCEEEEEECC---CeEEEEEEeCC
Q 018806          306 EGRMILLAFAG---SLTLGSIHFAS  327 (350)
Q Consensus       306 ~g~~l~~~~~~---~~~~~~~~~~~  327 (350)
                      +|+.|++.++.   ...++.+++..
T Consensus       326 dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          326 VGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCC
Confidence            99999888743   35677777654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=8.8e-11  Score=111.66  Aligned_cols=197  Identities=10%  Similarity=0.091  Sum_probs=128.5

Q ss_pred             cCeeEEEEecCCCEEEEEEC-----CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC--------
Q 018806          100 VDLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--------  166 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------  166 (350)
                      ..+.+++|||||++||.+..     ...|++||+.+  ++......  +......++|+ ||+.|+++..+.        
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--g~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES--KQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT--CSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC--CCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            35889999999999997542     25788999864  44333221  11113678999 999999988774        


Q ss_pred             -----cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccC-CCCCceeeEEECCCCCeEEEEEeCC---CeE
Q 018806          167 -----GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYES---SSF  237 (350)
Q Consensus       167 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~---g~i  237 (350)
                           .|++|++.........                     +..... + .....++.|+|||++|+......   ..|
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~---------------------v~~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  261 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRL---------------------VFGAIPAQ-HHRYVGATVTEDDRFLLISAANSTSGNRL  261 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEE---------------------EESCSGGG-CCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred             cCCCcEEEEEECCCCcccceE---------------------EEecCCCC-CeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence                 3888887744321111                     111122 2 23567899999999987665421   389


Q ss_pred             EEEeCCCC--CceeeeecCCCeEEEEEcCCCCEEEEEe-cC---CeEEEEeCCCCce---eccccCCCCeEEEEEcCCCC
Q 018806          238 TIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAAK-FD---GTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGR  308 (350)
Q Consensus       238 ~iwd~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d---~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~  308 (350)
                      +++|+.++  ....+..+....... |+++|..|+..+ .+   +.|..+|+.+++.   ..+..+...+.  .|+++++
T Consensus       262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~  338 (693)
T 3iuj_A          262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG  338 (693)
T ss_dssp             EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT
T ss_pred             EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC
Confidence            99999876  345555555555554 677777665444 33   5899999998765   45556655554  8999999


Q ss_pred             EEEEEE--CCCeEEEEEEeC
Q 018806          309 MILLAF--AGSLTLGSIHFA  326 (350)
Q Consensus       309 ~l~~~~--~~~~~~~~~~~~  326 (350)
                      +|++..  ++...++.+++.
T Consensus       339 ~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          339 YLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             EEEEEEEETTEEEEEEECTT
T ss_pred             EEEEEEEECCeeEEEEEECC
Confidence            998876  333456666544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.34  E-value=4.1e-10  Score=96.11  Aligned_cols=196  Identities=9%  Similarity=0.072  Sum_probs=126.2

Q ss_pred             cCeeEEEEecC-CCEEEEEECCCeEEEEEccCCCCCceeE-ecC--C-CCCCeeEEEEeeCCCeEEEEecC---------
Q 018806          100 VDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGKDACI-LTS--D-SQRDVKVLEWRPNGGRSLSVGCK---------  165 (350)
Q Consensus       100 ~~V~~v~~sp~-g~~la~~s~d~~i~iw~~~~~~~~~~~~-~~~--~-~~~~v~~~~~sp~~~~l~~~~~d---------  165 (350)
                      ..+.+++++++ |+++++ +..+.|.+|+.+   ++.... ...  . ....+.+++++++|..+++...+         
T Consensus        71 ~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVA-DMRLGLLVVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             CCEEEEEECSSSSEEEEE-ETTTEEEEEETT---SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCceEEEecCCCcEEEE-ECCCCEEEEeCC---CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            35889999999 765544 445578888874   332221 111  1 12358899999997655554433         


Q ss_pred             ------CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC----CCCCeEEEEEeCCC
Q 018806          166 ------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----PDGRYLASASYESS  235 (350)
Q Consensus       166 ------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~d~g  235 (350)
                            +.|..|+..  +....+                         ..+. .....++|+    |+++.|+.+...++
T Consensus       147 ~~~~~~~~l~~~~~~--g~~~~~-------------------------~~~~-~~~~~i~~~~~~d~dg~~l~v~~~~~~  198 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD--GQMIQV-------------------------DTAF-QFPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             TTSSSCEEEEEECTT--SCEEEE-------------------------EEEE-SSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             cccCCCCeEEEECCC--CCEEEe-------------------------ccCC-CCcceEEEecccCCCCCEEEEEECCCC
Confidence                  345555433  211110                         0111 346788999    99987766654336


Q ss_pred             eEEEEeCC-CCCce---eee---ecC-CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCC
Q 018806          236 SFTIWDVA-QGLGT---PIR---RGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPE  306 (350)
Q Consensus       236 ~i~iwd~~-~~~~~---~~~---~~~-~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~  306 (350)
                      .|.+||.. .+...   ...   .+. ..+..++++++|+++++...++.|.+||.++++.. .+..+...+.+++|+++
T Consensus       199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~d  278 (314)
T 1pjx_A          199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTT
T ss_pred             eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCC
Confidence            99999986 34321   111   122 55788999999998888778899999999866653 33344567899999999


Q ss_pred             CCEEEEEECCCeEEEEEEeCC
Q 018806          307 GRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       307 g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      |+.|+++......++.++...
T Consensus       279 g~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          279 TKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEeCCCCeEEEEeCCC
Confidence            998887876655677777653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.34  E-value=1.4e-10  Score=97.43  Aligned_cols=183  Identities=10%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccc
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      .+++|++++.++.|.+||.+  +++..-.+.......+.++.++|+|+.++  +.++.|..||.. ++....        
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~-G~~~W~--------   70 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD-GRELWN--------   70 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT-SCEEEE--------
T ss_pred             CCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC-CCEEEE--------
Confidence            46789999999999999984  37666655432224689999999976555  457889999873 432211        


Q ss_pred             cceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-CCCeEEEEeCCCCCceeeee-------cCCCeEEEE
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR-------GFGGLSILK  261 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~g~i~iwd~~~~~~~~~~~-------~~~~v~~~~  261 (350)
                                       +..+....+.++.+.++|+.+++.+. + +.|..+|. +++......       +......++
T Consensus        71 -----------------~~~~~~~~~~~~~~~~dG~~lv~~~~~~-~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           71 -----------------IAAPAGCEMQTARILPDGNALVAWCGHP-STILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             -----------------EECCTTCEEEEEEECTTSCEEEEEESTT-EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             -----------------EcCCCCccccccEECCCCCEEEEecCCC-CEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence                             22221246788999999999998877 5 58888886 454432221       112345567


Q ss_pred             EcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       262 ~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +.++|+++++...++.|..||.+ |+..........+.++...++|+.++++.++. ++..++..
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~-~v~~~d~~  194 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAH-CFVQLNLE  194 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTS-EEEEECTT
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCC-eEEEEeCc
Confidence            89999999999999999999998 77754443345567788899999888766543 45555544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.30  E-value=8.3e-10  Score=92.60  Aligned_cols=186  Identities=12%  Similarity=0.027  Sum_probs=132.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~  179 (350)
                      .+.++.++|+|++|+  +.++.|..||.+   ++.+-.+..+....+.++.+.++|+.+++.+. ++.+..+|.. ++..
T Consensus        38 ~~~~~~~~pdG~ilv--s~~~~V~~~d~~---G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l  111 (276)
T 3no2_A           38 ECNSVAATKAGEILF--SYSKGAKMITRD---GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVL  111 (276)
T ss_dssp             CCCEEEECTTSCEEE--ECBSEEEEECTT---SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEE
T ss_pred             CCcCeEECCCCCEEE--eCCCCEEEECCC---CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEE
Confidence            478899999999888  457778888872   66555554333457889999999888877766 5666666643 2221


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  259 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~  259 (350)
                      ..+..                   ......++ .....+++.++|+++++...+ +.|..||.+ ++..........+.+
T Consensus       112 ~~~~~-------------------~~~~~~~~-~~~~~v~~~~~G~~lv~~~~~-~~v~~~d~~-G~~~w~~~~~~~~~~  169 (276)
T 3no2_A          112 SKTEF-------------------ETGIERPH-AQFRQINKNKKGNYLVPLFAT-SEVREIAPN-GQLLNSVKLSGTPFS  169 (276)
T ss_dssp             EEEEE-------------------CCSCSSGG-GSCSCCEECTTSCEEEEETTT-TEEEEECTT-SCEEEEEECSSCCCE
T ss_pred             EEEec-------------------cCCCCccc-ccccCceECCCCCEEEEecCC-CEEEEECCC-CCEEEEEECCCCccc
Confidence            11110                   00011222 245667889999999988777 699999998 877766655566777


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-c------CCCCeEEEEEcCCCCEEEEEE
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-S------TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~------~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +...++|+.++++..++.|..+|.++++..... .      ....+..++..++|..+++..
T Consensus       170 ~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          170 SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            888999999998888889999999988874222 1      123378889999999988775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.29  E-value=1.5e-10  Score=102.33  Aligned_cols=222  Identities=11%  Similarity=-0.048  Sum_probs=145.4

Q ss_pred             EEEEecCCCEEEEEE----------CCCeEEEEEccCCCCCceeEecCC------CCCCeeEEEEeeCCCeEEEEec--C
Q 018806          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--K  165 (350)
Q Consensus       104 ~v~~sp~g~~la~~s----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~--d  165 (350)
                      .++++|||++|+++.          .++.|.++|..+  .+....+..+      .......+.|+|||++++++..  +
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t--~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT--FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC--CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence            899999999888876          367899999854  5544444322      1234578899999988888764  4


Q ss_pred             CcEEEEecCCCCCCceeecccc---cc---cceecCCCCCceEEeeeccCCCC------------Cc-eeeEEECCCCCe
Q 018806          166 GGICIWAPSYPGNAASVRSGAA---SF---LGALSRGPGTRWTLVDFLRSQNG------------EQ-ITALSWGPDGRY  226 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~-v~~~~~sp~g~~  226 (350)
                      +.|.+.|+...+....+.....   .+   ..-+..+.++++..+.. ...+-            .. ...+.+.++++.
T Consensus       200 ~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~  278 (426)
T 3c75_H          200 PAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGR  278 (426)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred             CeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence            8899999986665555543221   00   11134445555444433 11100            01 123567999988


Q ss_pred             EEEEEeCCCeEEEEeCCCCCceeeee-------------cCCCeEEEEEcCCCCEEEEEec----------CCeEEEEeC
Q 018806          227 LASASYESSSFTIWDVAQGLGTPIRR-------------GFGGLSILKWSPTGDYFFAAKF----------DGTFYLWET  283 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~----------d~~v~iwd~  283 (350)
                      ++..+.. |.+.+.|........+..             .......++++|+++.+++...          ++.|.++|.
T Consensus       279 ~~~~s~~-g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          279 LVWPTYT-GKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             EEEEBTT-SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEEEeCC-CcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            8888777 699999987654221110             0122233789999998776642          357999999


Q ss_pred             CCCceeccccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEEeCCCC
Q 018806          284 NTWTSEPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       284 ~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      .+.+......-.....+++|+|||+ +++++...+..+..++.....
T Consensus       358 ~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          358 ETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             TTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            9999855443344689999999999 888877566778888876544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.28  E-value=4.2e-10  Score=97.82  Aligned_cols=222  Identities=11%  Similarity=0.003  Sum_probs=141.1

Q ss_pred             EEEEecCCCEEEEEE----------CCCeEEEEEccCCCCCceeEecCCC------CCCeeEEEEeeCCCeEEEEec--C
Q 018806          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--K  165 (350)
Q Consensus       104 ~v~~sp~g~~la~~s----------~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~--d  165 (350)
                      .+++||||++|++++          .++.|.+||..+  .+....+..+.      ......++|+|||++++++..  +
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t--~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence            399999999888775          367899999864  55444443221      235678999999988887764  5


Q ss_pred             CcEEEEecCCCCCCceeeccccc---ccc---eecCCCCCceEEeeecc---------CCC---CCce-eeEEEC-CCCC
Q 018806          166 GGICIWAPSYPGNAASVRSGAAS---FLG---ALSRGPGTRWTLVDFLR---------SQN---GEQI-TALSWG-PDGR  225 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~---------~~~---~~~v-~~~~~s-p~g~  225 (350)
                      +.|.++|+...+....+......   +.+   -+..+.++++..+..-.         ...   ...+ ....|. ++|+
T Consensus       160 ~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~  239 (386)
T 3sjl_D          160 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  239 (386)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             CeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence            89999999976665555432110   111   12334455443332111         000   0111 124553 5775


Q ss_pred             eEEEEEeCCCeEEEEeCCCCCceeeee-------------cCCCeEEEEEcCCCCEEEEEec----------CCeEEEEe
Q 018806          226 YLASASYESSSFTIWDVAQGLGTPIRR-------------GFGGLSILKWSPTGDYFFAAKF----------DGTFYLWE  282 (350)
Q Consensus       226 ~l~~~~~d~g~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~----------d~~v~iwd  282 (350)
                      .++ .+.+ |+|++.|+.+........             ..+....++++++++.+++...          .+.|.++|
T Consensus       240 ~~~-vs~~-g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          240 LVW-PTYT-GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             EEE-EBTT-SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             EEE-EeCC-CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            544 5556 799999998764321110             1233445788999998877643          25799999


Q ss_pred             CCCCceeccccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEEeCCCC
Q 018806          283 TNTWTSEPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       283 ~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      +++++......-...++++++++|++ +|+++...+..+..++....+
T Consensus       318 ~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          318 AKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             TTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            99999865544445789999999997 777777666677778776543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.27  E-value=1.3e-09  Score=96.79  Aligned_cols=196  Identities=15%  Similarity=0.182  Sum_probs=126.8

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC--cEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~  178 (350)
                      ....|+|+++++++++...++.|++||.+.  +...... .. ..... ++|+|+++.++++..++  .|.+++......
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~--g~~~~~~-~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD--NKVTTVH-PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTT--TEEEEEE-ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCC--CEEEEee-cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            588999999999777766778999999853  3332222 22 22334 99999988777777754  788887753221


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee----eecC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----RRGF  254 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~----~~~~  254 (350)
                      ...+                      ..+..+....+.+++++|++..|+.+..+ +.|+.||..++....+    ....
T Consensus       207 ~~~~----------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~-~~I~~~d~~~~~~~~~~~~~~~g~  263 (409)
T 3hrp_A          207 PTRI----------------------GQLGSTFSGKIGAVALDETEEWLYFVDSN-KNFGRFNVKTQEVTLIKQLELSGS  263 (409)
T ss_dssp             EEEE----------------------EECCTTSCSCCCBCEECTTSSEEEEECTT-CEEEEEETTTCCEEEEEECCCCSC
T ss_pred             eEEe----------------------eeccchhcCCcEEEEEeCCCCeEEEEECC-CcEEEEECCCCCEEEEecccccCC
Confidence            1111                      11111122567899999965566666555 6999999988764433    1111


Q ss_pred             -CCe-E-EEEEcCC-CCEEEEEecCCeEEEEeCCCCceeccccC---------------CCCeEEEEEcCCCCEEEEEEC
Q 018806          255 -GGL-S-ILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWSST---------------SGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       255 -~~v-~-~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l~~~~~  315 (350)
                       ... . .++|+|+ +.++++-..++.|+.|+.... ...+.++               -.....++++++|+ |+++..
T Consensus       264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~  341 (409)
T 3hrp_A          264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG  341 (409)
T ss_dssp             CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred             CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence             122 3 8999996 555555566789999997653 3333222               23578999999999 555665


Q ss_pred             -CCeEEEEEEeC
Q 018806          316 -GSLTLGSIHFA  326 (350)
Q Consensus       316 -~~~~~~~~~~~  326 (350)
                       ....+..++..
T Consensus       342 ~~~~~I~~~~~~  353 (409)
T 3hrp_A          342 FKGYCLRKLDIL  353 (409)
T ss_dssp             TTTCEEEEEETT
T ss_pred             CCCCEEEEEECC
Confidence             66678887743

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=1.4e-09  Score=93.59  Aligned_cols=184  Identities=12%  Similarity=0.093  Sum_probs=117.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC---CCCCeeEEEEeeCCCeEEEEecC----CcEEEEe
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD---SQRDVKVLEWRPNGGRSLSVGCK----GGICIWA  172 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd  172 (350)
                      ..+.+++|+++|+++++. .+ .|.+||...  ++........   ....+.+++++|+|+.+++...+    ....||.
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DD-GLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TT-EEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CC-CEEEEECCC--CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            368999999999877754 44 488888753  4332222111   12358899999997655443321    2344444


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC--CC-Cc--
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA--QG-LG--  247 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~--~~-~~--  247 (350)
                      +. .+....+                         ... ......++|+|+|+.++.+...++.|.+||+.  ++ ..  
T Consensus       166 ~~-~g~~~~~-------------------------~~~-~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~  218 (326)
T 2ghs_A          166 VA-KGKVTKL-------------------------FAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  218 (326)
T ss_dssp             EE-TTEEEEE-------------------------EEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             Ee-CCcEEEe-------------------------eCC-CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence            43 2221111                         011 13467899999999887765443699999986  55 32  


Q ss_pred             -eeeee---cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEc-CCCCEEEEEEC
Q 018806          248 -TPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD-PEGRMILLAFA  315 (350)
Q Consensus       248 -~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s-~~g~~l~~~~~  315 (350)
                       ..+..   ....+..++++++|.+.++...++.|.+||.. ++. ..+......+++++|+ ++++.|++++.
T Consensus       219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence             11211   23456789999999877776667899999984 554 3444445579999998 89988877763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.26  E-value=5.3e-09  Score=88.35  Aligned_cols=193  Identities=9%  Similarity=-0.008  Sum_probs=130.1

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.+++++++|++.++...++.|..|+.+   +.............+..+++.++|..+++...++.|.+||.. ... 
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~-  131 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK---GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKI-  131 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC---CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCE-
Confidence            468899999999987776668889899874   332222111245578999999986555544456889999873 221 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee--ecCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--~~~~~v  257 (350)
                      ..+                       ..... ...+..++++++|+.+++.... +.|..||. +++...+.  .....+
T Consensus       132 ~~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~~~~~~~~~  185 (299)
T 2z2n_A          132 REY-----------------------ELPNK-GSYPSFITLGSDNALWFTENQN-NAIGRITE-SGDITEFKIPTPASGP  185 (299)
T ss_dssp             EEE-----------------------ECSST-TCCEEEEEECTTSCEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEe-----------------------cCCCC-CCCCceEEEcCCCCEEEEeCCC-CEEEEEcC-CCcEEEeeCCCCCCcc
Confidence            110                       01111 2468899999999776665555 59999998 66554432  234568


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ..++++++|++.++...++.|.+||. +++...+  ......+.+++++++|+..+ +......+..++.
T Consensus       186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~  253 (299)
T 2z2n_A          186 VGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTS  253 (299)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEET
T ss_pred             eeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECC
Confidence            89999999997776666889999999 6665433  23446789999999998554 5433345666665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.25  E-value=4.7e-09  Score=88.65  Aligned_cols=193  Identities=9%  Similarity=0.030  Sum_probs=131.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.+++++++|++.++...++.|.+|+..   +.........+...+.++++.++|..+++...++.|..|+.. . ..
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~   89 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD---GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G-II   89 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT---CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC---CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C-cE
Confidence            458999999999977765557889999974   332222212345679999999997655554446889999865 1 11


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee--cCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~--~~~~v  257 (350)
                      ..+.                       +... ...+..++++++|+.+++...+ +.|..||. +++......  ....+
T Consensus        90 ~~~~-----------------------~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~d~-~g~~~~~~~~~~~~~~  143 (299)
T 2z2n_A           90 KEYT-----------------------LPNP-DSAPYGITEGPNGDIWFTEMNG-NRIGRITD-DGKIREYELPNKGSYP  143 (299)
T ss_dssp             EEEE-----------------------CSST-TCCEEEEEECTTSCEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEEe-----------------------CCCc-CCCceeeEECCCCCEEEEecCC-ceEEEECC-CCCEEEecCCCCCCCC
Confidence            1110                       1111 2478899999999877766556 59999998 555443322  33568


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ..++++++|+..++...++.|..||. +++...+  ......+..++++++|+..+ +......+..++.
T Consensus       144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~  211 (299)
T 2z2n_A          144 SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITT  211 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT
T ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECC
Confidence            89999999987777767789999999 6666443  23445688999999998555 4433345666655

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.25  E-value=8.7e-09  Score=91.47  Aligned_cols=196  Identities=10%  Similarity=-0.045  Sum_probs=126.1

Q ss_pred             EEEecCCCEEEEEECCC--eEEEEEccCCCCCceeEe---cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          105 VSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACIL---TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       105 v~~sp~g~~la~~s~d~--~i~iw~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ++|+++++.|+++..++  .|.+++...  +.....+   .......+.+++++|+++.|+++..++.|+.||..... .
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~--~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~  252 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKAS--GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-V  252 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGG--TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-E
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCC--CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-E
Confidence            89999999998887765  677777653  2222222   11144568899999965677776556889999987332 1


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCcee-eEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC----
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF----  254 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~----  254 (350)
                      ..+...                    ...+....... .++|+|++..|+.+...++.|+.|+.... ...+....    
T Consensus       253 ~~~~~~--------------------~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g  311 (409)
T 3hrp_A          253 TLIKQL--------------------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKT  311 (409)
T ss_dssp             EEEEEC--------------------CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCS
T ss_pred             EEEecc--------------------cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCC
Confidence            111000                    01111111113 89999965566555544469999997654 33333221    


Q ss_pred             -----------CCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccccC---------------CCCeEEEEEcCCC
Q 018806          255 -----------GGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSST---------------SGFVTGATWDPEG  307 (350)
Q Consensus       255 -----------~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~s~~g  307 (350)
                                 .....++++++|+++++-. .++.|+.|++.+++...+.++               -.....++++++|
T Consensus       312 ~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g  391 (409)
T 3hrp_A          312 VQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG  391 (409)
T ss_dssp             CBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred             cCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence                       3478899999999777777 788999999888877555443               2457899999996


Q ss_pred             CEEEEEECCCeEEEEEEe
Q 018806          308 RMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~  325 (350)
                      . |+++..+...+..+.+
T Consensus       392 ~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          392 G-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             E-EEEEESTTCEEEEEEE
T ss_pred             C-EEEEECCCCeEEEEEe
Confidence            5 4556555556666654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.21  E-value=4.5e-09  Score=89.63  Aligned_cols=199  Identities=9%  Similarity=0.094  Sum_probs=127.0

Q ss_pred             CeeEEEEecCCCEEEE-------EECCCeEEEEEccCCCCCceeEec---CCCCCCeeEEEEeeCCCeEEEEecCCcEEE
Q 018806          101 DLQGVSWHQHKHIVAF-------ISGSTQVIVRDYEDSEGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICI  170 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~-------~s~d~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i  170 (350)
                      ...+++|+++|+++++       ...++.|.+|+...  ++......   .++...+..+++++++..++++...+.|.+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            3578999999988777       56788899998743  33322211   124467899999998445555555567888


Q ss_pred             EecCCCCCCcee-ecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC--------------CC
Q 018806          171 WAPSYPGNAASV-RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--------------SS  235 (350)
Q Consensus       171 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--------------~g  235 (350)
                      ||.. +. ...+ ...                     ..+.....+.+++++++|+.+++...+              .+
T Consensus        97 ~d~~-g~-~~~~~~~~---------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           97 VQTD-GT-FEEIAKKD---------------------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EETT-SC-EEECCSBC---------------------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EeCC-CC-EEEEEecc---------------------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence            9876 32 1111 100                     011112467899999999877766543              13


Q ss_pred             eEEEEeCCCCCceeeeecCCCeEEEEEc----CCCCEEEEE-ecCCeEEEEeCC-CCcee------ccccCC-CCeEEEE
Q 018806          236 SFTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDYFFAA-KFDGTFYLWETN-TWTSE------PWSSTS-GFVTGAT  302 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~-~~d~~v~iwd~~-~~~~~------~~~~~~-~~v~~~~  302 (350)
                      .|..||.. ++...+..+......++|+    |+|+.|+.+ ..++.|++||.+ +++..      .+..+. ..+..++
T Consensus       154 ~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             eEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence            67888776 5544444444567889999    999776555 467899999986 44421      122232 5678999


Q ss_pred             EcCCCCEEEEEECCCeEEEEEEeC
Q 018806          303 WDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       303 ~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ++++|+++++.... ..+..++..
T Consensus       233 ~d~~G~l~v~~~~~-~~i~~~d~~  255 (314)
T 1pjx_A          233 FDEDNNLLVANWGS-SHIEVFGPD  255 (314)
T ss_dssp             EBTTCCEEEEEETT-TEEEEECTT
T ss_pred             ECCCCCEEEEEcCC-CEEEEEcCC
Confidence            99999877755432 345555544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.18  E-value=2.2e-08  Score=82.46  Aligned_cols=194  Identities=15%  Similarity=0.055  Sum_probs=128.2

Q ss_pred             eeEEEEecCCCEEEEEEC--CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISG--STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      ...++|++++.+.++.+.  ++.|++.|+.+  ++....+..+.......+++  ++++++.+.. ++.+.++|....+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t--g~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQT--GKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTT--CCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTTEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCC--CCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCCcE
Confidence            578999998754444333  57899999854  66555543222222234444  4567766666 59999999874332


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee---cC-
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF-  254 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~~-  254 (350)
                      .                         ..+.... .  ....+++||+.++.+..+ ++|.++|..+.+......   .. 
T Consensus        99 ~-------------------------~~i~~g~-~--~g~glt~Dg~~l~vs~gs-~~l~viD~~t~~v~~~I~Vg~~~~  149 (266)
T 2iwa_A           99 I-------------------------KNFTHQM-K--DGWGLATDGKILYGSDGT-SILYEIDPHTFKLIKKHNVKYNGH  149 (266)
T ss_dssp             E-------------------------EEEECCS-S--SCCEEEECSSSEEEECSS-SEEEEECTTTCCEEEEEECEETTE
T ss_pred             E-------------------------EEEECCC-C--CeEEEEECCCEEEEECCC-CeEEEEECCCCcEEEEEEECCCCc
Confidence            2                         2222110 1  123456688888877766 699999999877554322   11 


Q ss_pred             --CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC--------------CCCeEEEEEcCCCCEEEEEECCCe
Q 018806          255 --GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--------------SGFVTGATWDPEGRMILLAFAGSL  318 (350)
Q Consensus       255 --~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------~~~v~~~~~s~~g~~l~~~~~~~~  318 (350)
                        ..+..+.|. +|+..+....++.|.+.|..+++.......              ......++|+|+++.+++++....
T Consensus       150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence              236678888 775555555678999999999997432211              135689999999999999987778


Q ss_pred             EEEEEEeCCCC
Q 018806          319 TLGSIHFASKP  329 (350)
Q Consensus       319 ~~~~~~~~~~~  329 (350)
                      .++.+++...+
T Consensus       229 ~v~~i~l~~~~  239 (266)
T 2iwa_A          229 KLFEIKLHLVR  239 (266)
T ss_dssp             EEEEEEEEECC
T ss_pred             eEEEEEEeccc
Confidence            89999987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.15  E-value=6.1e-09  Score=88.17  Aligned_cols=154  Identities=10%  Similarity=0.068  Sum_probs=108.4

Q ss_pred             CCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          142 DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       142 ~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      .+.....+++|+|+|+.++.++. ++.|..|+....  ...                         +..+ ...+.++++
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------------~~~~-~~~~~~l~~   76 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------------EMHP-SHHQNGHCL   76 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------------EESS-CSSEEEEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------------EECC-CCCcceeeE
Confidence            34556789999999875555554 699999998732  111                         1122 257899999


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-----CCCeEEEEEcCCCCEEEEE----e-------------cCCeE
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAA----K-------------FDGTF  278 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~----~-------------~d~~v  278 (350)
                      +|+|+.+++...+ +.|.+||..+++...+...     ...+..++++|+|+++++.    .             ..+.|
T Consensus        77 ~~dg~l~v~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l  155 (296)
T 3e5z_A           77 NKQGHLIACSHGL-RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV  155 (296)
T ss_dssp             CTTCCEEEEETTT-TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred             CCCCcEEEEecCC-CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence            9999977766556 5999999988876544321     1345679999999988873    2             13467


Q ss_pred             EEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          279 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +.++.. ++...+..+......++|+|+|+.| ++......++.+++.
T Consensus       156 ~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          156 FRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLN  201 (296)
T ss_dssp             EEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEEC
T ss_pred             EEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEEC
Confidence            777766 5655555666678999999999999 666555567777664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=3.6e-09  Score=90.10  Aligned_cols=182  Identities=11%  Similarity=0.019  Sum_probs=118.4

Q ss_pred             CeeEEEEecCCC-EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      ...++.|+|+|+ ++++...++.|..|+..   +.. ..+ ..+...+..++++++|+ ++++.. ++.|.+|+.. +. 
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~---g~~-~~~-~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~-  117 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED---GTV-DVL-LDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ-  117 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETT---SCE-EEE-EESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC-
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCC---CCE-EEE-eCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CC-
Confidence            367899999998 45555567889999863   332 222 23456789999999976 444444 5789999865 22 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEE----EEe------------CCCeEEEEeC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS----ASY------------ESSSFTIWDV  242 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~----~~~------------d~g~i~iwd~  242 (350)
                      ...+.                     ....+.....+.+++++|+|+.+++    +..            ..+.|..||.
T Consensus       118 ~~~~~---------------------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A          118 AHLLV---------------------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             EEEEE---------------------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             EEEEE---------------------eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence            11111                     1111111245788999999987775    221            1146888888


Q ss_pred             CCCCceeeeecCCCeEEEEEcCCCCEEEEEecC------CeEEEEeCCCCcee---ccc-cCCCCeEEEEEcCCCCEEEE
Q 018806          243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------GTFYLWETNTWTSE---PWS-STSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       243 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------~~v~iwd~~~~~~~---~~~-~~~~~v~~~~~s~~g~~l~~  312 (350)
                      .+++...+. .......++|+|||+.|+.+...      +.|++|++..+...   .+. ........++++++|++.++
T Consensus       177 ~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~  255 (305)
T 3dr2_A          177 DGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS  255 (305)
T ss_dssp             SSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC
T ss_pred             CCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe
Confidence            777765554 44567889999999988777665      78999998765421   111 12334567899999995443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.13  E-value=5.7e-08  Score=81.96  Aligned_cols=193  Identities=10%  Similarity=-0.015  Sum_probs=127.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.+++++++|++.++...++.|..++..   ++............+..+++.++|..+++...++.|..++.. ... 
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-  136 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK---GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-  136 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC---CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-
Confidence            458899999999977766567888888874   332222222234678999999986655544446888888865 221 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee--ecCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--~~~~~v  257 (350)
                      ..+                       .+... ...+..+++.++|+.+++.... +.|..||. +++...+.  .....+
T Consensus       137 ~~~-----------------------~~~~~-~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~~~~~~~~~  190 (300)
T 2qc5_A          137 YEY-----------------------DLPNK-GSYPAFITLGSDNALWFTENQN-NSIGRITN-TGKLEEYPLPTNAAAP  190 (300)
T ss_dssp             EEE-----------------------ECSST-TCCEEEEEECTTSSEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEc-----------------------cCCCC-CCCceeEEECCCCCEEEEecCC-CeEEEECC-CCcEEEeeCCCCCCCc
Confidence            111                       01111 2468899999999855554445 59999998 55544332  223568


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceecc--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ..++++++|++.++....+.|.+||. +++....  ......+.+++++++|+..+ +......+..++.
T Consensus       191 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~  258 (300)
T 2qc5_A          191 VGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF-TEWGANQIGRITN  258 (300)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEECT
T ss_pred             ceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE-eccCCCeEEEECC
Confidence            89999999987776666778999998 5554332  23456689999999998544 5433345555554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.13  E-value=7.7e-09  Score=98.31  Aligned_cols=195  Identities=12%  Similarity=0.092  Sum_probs=128.5

Q ss_pred             eEEEEecCCCEEEEEECCC-------------eEEEEEccCCCCCceeEecC-C-CCCCeeEEEEeeCCCeEEEEecC--
Q 018806          103 QGVSWHQHKHIVAFISGST-------------QVIVRDYEDSEGKDACILTS-D-SQRDVKVLEWRPNGGRSLSVGCK--  165 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~-------------~i~iw~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~d--  165 (350)
                      ..++|+ ||+.|++++.+.             .|++|++.+........... . |...+.++.|+|||+.++.....  
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            678999 999999998874             38889986543332333321 2 34457889999999888765542  


Q ss_pred             --CcEEEEecCCCC-CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC---CCeEEE
Q 018806          166 --GGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---SSSFTI  239 (350)
Q Consensus       166 --~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---~g~i~i  239 (350)
                        +.++++|+..+. ....                         +..+. ...... |+++|..|+..+..   ++.|..
T Consensus       257 ~~~~i~~~d~~~~~~~~~~-------------------------l~~~~-~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~  309 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLT-------------------------VQGDL-DADVSL-VDNKGSTLYLLTNRDAPNRRLVT  309 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEE-------------------------EECSS-SSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred             CCcEEEEEECCCCCCceEE-------------------------EeCCC-CceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence              488999987432 1111                         22222 233333 67777777766543   258999


Q ss_pred             EeCCCCCc---eeeeecCCCeEEEEEcCCCCEEEEEec-CC--eEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEE
Q 018806          240 WDVAQGLG---TPIRRGFGGLSILKWSPTGDYFFAAKF-DG--TFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       240 wd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~--~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~  312 (350)
                      +|+.++..   ..+..+...+.  .|++++++|+.... ++  .|++||+.++....+. .....+..+.++++++.|++
T Consensus       310 ~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          310 VDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF  387 (693)
T ss_dssp             EETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred             EeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEE
Confidence            99998765   44555555554  89999998876654 44  7899999866554443 34456778888999988877


Q ss_pred             EECC---CeEEEEEEeCC
Q 018806          313 AFAG---SLTLGSIHFAS  327 (350)
Q Consensus       313 ~~~~---~~~~~~~~~~~  327 (350)
                      ....   -..++.+++..
T Consensus       388 ~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          388 GFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EEECSSSCCEEEEECTTT
T ss_pred             EecCCCCCCEEEEEECCC
Confidence            6532   24677776643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=5.8e-08  Score=83.47  Aligned_cols=192  Identities=10%  Similarity=0.042  Sum_probs=118.7

Q ss_pred             eeEEEEecCCCEE-EEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~l-a~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ..++.|+|++..+ ++...++.|..|+...  +. ...+.  ....+.+++|+|+|+.++ +. +..|.+||...+. ..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~--~~-~~~~~--~~~~v~~i~~~~dg~l~v-~~-~~gl~~~d~~~g~-~~  122 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLAS--GR-KTVHA--LPFMGSALAKISDSKQLI-AS-DDGLFLRDTATGV-LT  122 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTT--TE-EEEEE--CSSCEEEEEEEETTEEEE-EE-TTEEEEEETTTCC-EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCC--Cc-EEEEE--CCCcceEEEEeCCCeEEE-EE-CCCEEEEECCCCc-EE
Confidence            4678999986544 4445678899999853  32 22232  345799999999965444 44 4458889876332 11


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC-----CCeEEEEeCCCCCceeeeecCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----SSSFTIWDVAQGLGTPIRRGFG  255 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----~g~i~iwd~~~~~~~~~~~~~~  255 (350)
                      .+...                     ........+.+++++|+|+.+++...+     .+.|..++  +++...+.....
T Consensus       123 ~~~~~---------------------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~  179 (326)
T 2ghs_A          123 LHAEL---------------------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS  179 (326)
T ss_dssp             EEECS---------------------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES
T ss_pred             EEeeC---------------------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc
Confidence            11100                     001112468899999999876654431     13666666  454444444445


Q ss_pred             CeEEEEEcCCCCEEEEE-ecCCeEEEEeCC--CC-cee---cc---ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          256 GLSILKWSPTGDYFFAA-KFDGTFYLWETN--TW-TSE---PW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~--~~-~~~---~~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ....++|+|+|+.|+.+ +.++.|++||++  ++ +..   .+   ......+..++++++|.+.++...+ ..+..++.
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~-~~v~~~d~  258 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-GAVDRYDT  258 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-TEEEEECT
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC-CEEEEECC
Confidence            67789999999987655 456899999986  55 421   11   1234557889999999876654332 34555544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.11  E-value=6.4e-08  Score=81.62  Aligned_cols=193  Identities=10%  Similarity=0.029  Sum_probs=129.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.+++++++|++.++...++.|.+|+..   ++............+..+++.++|..+++...++.|..+|.. +.. 
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-   94 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS---GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-   94 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC---CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence            358899999999977766678899999974   332222222334678999999987655544446889998876 221 


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee--cCCCe
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGL  257 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~--~~~~v  257 (350)
                      ..+                       .+... ...+.++++.++|+.+++...+ +.|..||.. ++......  ....+
T Consensus        95 ~~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~  148 (300)
T 2qc5_A           95 TEY-----------------------PLPQP-DSGPYGITEGLNGDIWFTQLNG-DRIGKLTAD-GTIYEYDLPNKGSYP  148 (300)
T ss_dssp             EEE-----------------------ECSST-TCCEEEEEECSTTCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCE
T ss_pred             EEe-----------------------cCCCC-CCCCccceECCCCCEEEEccCC-CeEEEECCC-CCEEEccCCCCCCCc
Confidence            111                       01111 2468899999999877665556 599999987 55443322  24568


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ..+++.++|+..++...++.|..||. +++...+.  .....+..++++++|+..+ +......+..++.
T Consensus       149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~  216 (300)
T 2qc5_A          149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITT  216 (300)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcC
Confidence            89999999996666666789999998 56554332  3345688999999997655 4433335555554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.11  E-value=2.9e-08  Score=84.10  Aligned_cols=194  Identities=13%  Similarity=0.111  Sum_probs=119.5

Q ss_pred             eeEEEEecCCCE-EEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHI-VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~-la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      -.+..|+|++.. +++...++.|..|+...  +.. ..+  .....+.+++++++|+ ++++. ++.|.+||...+. ..
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~--~~~-~~~--~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~-~~   86 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFT--KQV-QRV--TMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQS-AV   86 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTT--CCE-EEE--ECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTE-EE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCC--CcE-EEE--eCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCc-EE
Confidence            457889996554 44445678999999853  332 222  2456799999999977 44443 6788999986322 11


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC----------CCeEEEEeCCCCCceee
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----------SSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----------~g~i~iwd~~~~~~~~~  250 (350)
                      .+..                     .........+.+++++|+|+.+++....          .+.|+.++.. ++...+
T Consensus        87 ~~~~---------------------~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~  144 (297)
T 3g4e_A           87 VLAT---------------------VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKY  144 (297)
T ss_dssp             EEEE---------------------CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEE
T ss_pred             EEEe---------------------cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEE
Confidence            1110                     0111112457899999999966654332          1244444443 333334


Q ss_pred             eecCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeC--CCCcee---cc---ccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 018806          251 RRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWET--NTWTSE---PW---SSTSGFVTGATWDPEGRMILLAFAGSLTLG  321 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~--~~~~~~---~~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  321 (350)
                      .........++|+|+++.|+.+ +.++.|.+|++  .+++..   .+   ......+..++++++|++.++...+ ..+.
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-~~v~  223 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-GRVI  223 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-TEEE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-CEEE
Confidence            4444567889999999987554 55789999987  455541   11   1233567899999999766654433 3455


Q ss_pred             EEEeC
Q 018806          322 SIHFA  326 (350)
Q Consensus       322 ~~~~~  326 (350)
                      .++..
T Consensus       224 ~~d~~  228 (297)
T 3g4e_A          224 RLDPV  228 (297)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            55543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.11  E-value=1.1e-09  Score=95.44  Aligned_cols=130  Identities=12%  Similarity=0.044  Sum_probs=98.3

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      |+.++|  |+++|+++ .++.|++||+....  ..... ..|...+.++.+.+.  .++++..||.+.+||+...... .
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~--~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-~  160 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELS--EFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-Q  160 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--CEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-E
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--ccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-c
Confidence            999999  99999998 88999999986432  22222 346677888887765  3888888999999999833321 0


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc--e-ee------e-
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--T-PI------R-  251 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~--~-~~------~-  251 (350)
                                                  + ...|++++|||+|  ++.+..| |++++|+...++.  . .+      . 
T Consensus       161 ----------------------------~-~~~Vs~v~WSpkG--~~vg~~d-g~i~~~~~~~~~~~~k~~I~~Pp~~~~  208 (388)
T 1xip_A          161 ----------------------------L-AQNVTSFDVTNSQ--LAVLLKD-RSFQSFAWRNGEMEKQFEFSLPSELEE  208 (388)
T ss_dssp             ----------------------------E-EESEEEEEECSSE--EEEEETT-SCEEEEEEETTEEEEEEEECCCHHHHT
T ss_pred             ----------------------------c-cCCceEEEEcCCc--eEEEEcC-CcEEEEcCCCccccccceecCCccccc
Confidence                                        1 1479999999999  6777888 7999998887763  2 23      1 


Q ss_pred             --ecCCCeEEEEEcCCCCEEEEE
Q 018806          252 --RGFGGLSILKWSPTGDYFFAA  272 (350)
Q Consensus       252 --~~~~~v~~~~~sp~g~~l~~~  272 (350)
                        .|...|.+++|.++++++++=
T Consensus       209 ~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          209 LPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             SCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ccCCCeeEEEEEEecCCeEEEEE
Confidence              256789999999999988753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.11  E-value=3.3e-09  Score=90.36  Aligned_cols=189  Identities=12%  Similarity=0.089  Sum_probs=116.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec--CC-CCCCeeEEEEeeCCCeEEEE---ec---------
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SD-SQRDVKVLEWRPNGGRSLSV---GC---------  164 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~--~~-~~~~v~~~~~sp~~~~l~~~---~~---------  164 (350)
                      ..+.+++++++|+++++...++.|.+|+.+   +.......  .+ ....+..+++.|+|..+++-   +.         
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~---g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD---GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC---CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence            358899999999977665556788888874   33222111  11 12347789999997655541   11         


Q ss_pred             -----CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC-----C
Q 018806          165 -----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----S  234 (350)
Q Consensus       165 -----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----~  234 (350)
                           .+.|..+|...+ ....                      .   . .. .....++|+||++.|+.+...     .
T Consensus       163 ~~~~~~~~v~~~d~~~g-~~~~----------------------~---~-~~-~~p~gl~~spdg~~lyv~~~~~~~~~~  214 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGS-PLQR----------------------M---A-DL-DHPNGLAFSPDEQTLYVSQTPEQGHGS  214 (305)
T ss_dssp             CCSSSCEEEEEECSSSC-CCEE----------------------E---E-EE-SSEEEEEECTTSSEEEEEECCC---CC
T ss_pred             ccccCCCeEEEEcCCCC-cEEE----------------------E---e-cC-CCCcceEEcCCCCEEEEEecCCcCCCC
Confidence                 134555554321 1111                      1   1 11 356789999999988877654     1


Q ss_pred             CeEEEEeCCCCCce--eee--ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEE
Q 018806          235 SSFTIWDVAQGLGT--PIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       235 g~i~iwd~~~~~~~--~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l  310 (350)
                      +.|.+|++..+...  ...  ...+....++++++|++.++ ..+ .|.+|+.+......+... ..+.+++|+++++.|
T Consensus       215 ~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~g~~~~~~~~~-~~~~~~~f~~d~~~L  291 (305)
T 3dr2_A          215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSDGQLLGHIPTP-GTASNCTFDQAQQRL  291 (305)
T ss_dssp             CEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECTTSCEEEEEECS-SCCCEEEECTTSCEE
T ss_pred             CEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECCCCCEEEEEECC-CceeEEEEeCCCCEE
Confidence            48999998765311  111  12344567899999995444 444 599999854333333333 358899999999999


Q ss_pred             EEEECCCeEEEEEE
Q 018806          311 LLAFAGSLTLGSIH  324 (350)
Q Consensus       311 ~~~~~~~~~~~~~~  324 (350)
                      ++++.+  .++.++
T Consensus       292 ~it~~~--~l~~~~  303 (305)
T 3dr2_A          292 FITGGP--CLWMLP  303 (305)
T ss_dssp             EEEETT--EEEEEE
T ss_pred             EEEcCC--eEEEEE
Confidence            888764  344443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.10  E-value=1.2e-08  Score=87.86  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=78.9

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC-ceeee----------ecCCCeEEEEEcC-CCCEEEEEe-cCCeEE
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIR----------RGFGGLSILKWSP-TGDYFFAAK-FDGTFY  279 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~-~~~~~----------~~~~~v~~~~~sp-~g~~l~~~~-~d~~v~  279 (350)
                      .....++++|+|+.+++...+ +.|++||..... .....          .+......++++| +|+++++.+ .++.|+
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~-~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVAL-HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTT-TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             CCceEEEECCCCCEEEEECCC-CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            478899999999977766666 699999986552 22222          1223688999999 788777776 689999


Q ss_pred             EEeCCCCceec-ccc----------CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          280 LWETNTWTSEP-WSS----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       280 iwd~~~~~~~~-~~~----------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      +||. +++... +..          +......++++|++..|+++......+..++..
T Consensus       170 ~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          170 QFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            9994 455432 221          123478999999966677776555677777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.09  E-value=1.2e-08  Score=89.57  Aligned_cols=187  Identities=13%  Similarity=0.061  Sum_probs=118.9

Q ss_pred             CeeEEEEecCCCEEEEEECC------CeEEEEEccCCCCCceeEecCC-C-CCCeeEEEEeeCCCeEEEEe---------
Q 018806          101 DLQGVSWHQHKHIVAFISGS------TQVIVRDYEDSEGKDACILTSD-S-QRDVKVLEWRPNGGRSLSVG---------  163 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d------~~i~iw~~~~~~~~~~~~~~~~-~-~~~v~~~~~sp~~~~l~~~~---------  163 (350)
                      .-..+.++|+| +++++..+      +.+.++|..+  .+.+..+..+ . ..--..+.|+|+++.++++.         
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T--~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~  215 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS--FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED  215 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT--CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC--CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccc
Confidence            34567888999 66665554      6888888753  5555555322 1 12345688899987666663         


Q ss_pred             ----------cCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE--CCCCCeEEEEE
Q 018806          164 ----------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASAS  231 (350)
Q Consensus       164 ----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~  231 (350)
                                ..++|.+||+...+....+..+                        ........+.|  +|++++++.++
T Consensus       216 g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg------------------------~~g~~P~~i~f~~~Pdg~~aYV~~  271 (462)
T 2ece_A          216 GLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG------------------------EENRMALELRPLHDPTKLMGFINM  271 (462)
T ss_dssp             CCCTTTHHHHSCCEEEEEETTTTEEEEEEESC------------------------TTEEEEEEEEECSSTTCCEEEEEE
T ss_pred             ccchhhhhhccCCEEEEEECCCCcEeeEEecC------------------------CCCCccceeEeeECCCCCEEEEEE
Confidence                      2589999999843222221111                        01123445555  99999998888


Q ss_pred             e-----CCCeEEEEeCCCCCceeee-----ec----------------CCCeEEEEEcCCCCEEEEEec-CCeEEEEeCC
Q 018806          232 Y-----ESSSFTIWDVAQGLGTPIR-----RG----------------FGGLSILKWSPTGDYFFAAKF-DGTFYLWETN  284 (350)
Q Consensus       232 ~-----d~g~i~iwd~~~~~~~~~~-----~~----------------~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~  284 (350)
                      .     .+++|.+|..+.+......     ..                ......+.+|+||++|.++.. .+.|.+||+.
T Consensus       272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            6     5568887766554321111     00                134678999999999977765 6799999986


Q ss_pred             CC---ceeccccCC---------------CCeEEEEEcCCCCEEEEEE
Q 018806          285 TW---TSEPWSSTS---------------GFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       285 ~~---~~~~~~~~~---------------~~v~~~~~s~~g~~l~~~~  314 (350)
                      ..   +........               +....++++|||++|+++.
T Consensus       352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            33   222111111               1358899999999999987

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.09  E-value=2.3e-08  Score=86.65  Aligned_cols=205  Identities=8%  Similarity=-0.047  Sum_probs=126.0

Q ss_pred             cCeeEEEEecCCCEEEEEEC-----CCeEEEEEccCCCCCceeEecC-----CCCCCeeEEEEeeCCCeEEEEe----cC
Q 018806          100 VDLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVG----CK  165 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~-----d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~----~d  165 (350)
                      ..+.+++++++|+++++-..     ++.|.+||+.+  ++....+..     .+...+..++++++++.++.+.    .+
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            36999999999986665433     57899999853  443333321     1234578999998755655544    45


Q ss_pred             CcEEEEecCCCCCCceeecc--ccccc-ceecC--------CCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC
Q 018806          166 GGICIWAPSYPGNAASVRSG--AASFL-GALSR--------GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES  234 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~--~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  234 (350)
                      +.|.+||+..... ..+...  ...+. ..+..        +.++....+       ...+..++|+|+|+.|+++....
T Consensus       145 ~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~-------~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          145 AALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRP-------HLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             CEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECC-------CCCEEEEEECTTSCEEEEEESSC
T ss_pred             CeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceece-------ecccceeEeccCCCEEEEEeCCC
Confidence            8999999874432 222111  00000 00000        111111000       12467899999999999887774


Q ss_pred             CeEEEEeCC---CCCc--------eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC--CCCeEEE
Q 018806          235 SSFTIWDVA---QGLG--------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--SGFVTGA  301 (350)
Q Consensus       235 g~i~iwd~~---~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~  301 (350)
                      ..+..++..   .+..        .....+.+....++++++|.++++...++.|.+||.++++...+...  ...+.++
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~v  296 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSF  296 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEE
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCee
Confidence            466665532   1110        11223344567799999999888888899999999966665443322  4568999


Q ss_pred             EEcCCCCEEEEEE
Q 018806          302 TWDPEGRMILLAF  314 (350)
Q Consensus       302 ~~s~~g~~l~~~~  314 (350)
                      +|.++|++++++.
T Consensus       297 a~~~~g~l~v~~~  309 (343)
T 2qe8_A          297 NFGSDGYLYFDCN  309 (343)
T ss_dssp             EECTTSCEEEEEC
T ss_pred             EECCCCcEEEEeC
Confidence            9999988777664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.05  E-value=9.2e-09  Score=89.40  Aligned_cols=215  Identities=12%  Similarity=-0.092  Sum_probs=133.0

Q ss_pred             EEEEecCCCEEEEEE----------CCCeEEEEEccCCCCCceeEecCC-C-----CCCeeEEEEeeCCCeEEEEec--C
Q 018806          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD-S-----QRDVKVLEWRPNGGRSLSVGC--K  165 (350)
Q Consensus       104 ~v~~sp~g~~la~~s----------~d~~i~iw~~~~~~~~~~~~~~~~-~-----~~~v~~~~~sp~~~~l~~~~~--d  165 (350)
                      .+.++|||++++++.          .++.|.+||..+  .+....+..+ .     ......++++|||++++++..  .
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T--~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence            799999999999886          368899999954  5555555322 0     134678999999988888764  3


Q ss_pred             CcEEE--EecCCCCCCceeeccc---cccc---ceecCCCCCceEEeeecc-----CCC-----------CCceeeEEEC
Q 018806          166 GGICI--WAPSYPGNAASVRSGA---ASFL---GALSRGPGTRWTLVDFLR-----SQN-----------GEQITALSWG  221 (350)
Q Consensus       166 ~~v~i--wd~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~-----~~~-----------~~~v~~~~~s  221 (350)
                      ..+.+  +|...   ...+....   ..+.   ..++.+.++++.....-.     ++.           ..+.   . +
T Consensus       147 ~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~  219 (368)
T 1mda_H          147 AAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A  219 (368)
T ss_dssp             CEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred             CeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence            67888  88864   22222111   0111   113444455443333211     000           0111   3 5


Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCceeeee-------------cCCCeEEEEEcCCCCEEEEEec-C--------CeEE
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLGTPIRR-------------GFGGLSILKWSPTGDYFFAAKF-D--------GTFY  279 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~-d--------~~v~  279 (350)
                      +++..++..+. + .+.+.|..+.....+..             .......++++|+++.++++.. .        +.+.
T Consensus       220 ~~~~~~~~vs~-~-~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~  297 (368)
T 1mda_H          220 NYPGMLVWAVA-S-SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS  297 (368)
T ss_dssp             TTTTEEEECBS-S-CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred             ccCCEEEEEcC-C-EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence            66666666666 4 89999987543221110             0112223789999998876543 2        3566


Q ss_pred             EEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEEEeCCCC
Q 018806          280 LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKP  329 (350)
Q Consensus       280 iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~  329 (350)
                      ++|+.+++.............++|+|||+++++++. .+..+..++.....
T Consensus       298 ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          298 SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            999999988544433346899999999997777776 57788888876544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.05  E-value=1.7e-07  Score=76.38  Aligned_cols=190  Identities=12%  Similarity=0.068  Sum_probs=126.9

Q ss_pred             eeEEEEecCCCEEEEEECCC--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      ...+.|+ ++.+..+.+.+|  .|+++|+.+  ++....+..  ..........+++++++.... ++.+.+||..+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~T--gkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIES--GKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTT--CCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCC--CcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence            5788898 777666767666  788888854  665555532  234444444455667776665 69999999985443


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee---cC-
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF-  254 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~~-  254 (350)
                      ...+                         ...  .  ....+++|++.|+.+... +.|.++|..+.+......   .. 
T Consensus       120 ~~ti-------------------------~~~--~--eG~glt~dg~~L~~SdGs-~~i~~iDp~T~~v~~~I~V~~~g~  169 (262)
T 3nol_A          120 VRSF-------------------------NYD--G--EGWGLTHNDQYLIMSDGT-PVLRFLDPESLTPVRTITVTAHGE  169 (262)
T ss_dssp             EEEE-------------------------ECS--S--CCCCEEECSSCEEECCSS-SEEEEECTTTCSEEEEEECEETTE
T ss_pred             EEEE-------------------------ECC--C--CceEEecCCCEEEEECCC-CeEEEEcCCCCeEEEEEEeccCCc
Confidence            3332                         211  1  122333678888777666 599999999887654322   11 


Q ss_pred             --CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc-------------CCCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          255 --GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------------TSGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       255 --~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                        ..+..+.|. +|+..+..-.++.|.+.|.++++......             .......+||+|+++.|++++..=-.
T Consensus       170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~  248 (262)
T 3nol_A          170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK  248 (262)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence              334567776 77655655568899999999999843221             12356899999999999988855568


Q ss_pred             EEEEEeCC
Q 018806          320 LGSIHFAS  327 (350)
Q Consensus       320 ~~~~~~~~  327 (350)
                      ++++++-.
T Consensus       249 ~~ev~~~~  256 (262)
T 3nol_A          249 VFEITLTQ  256 (262)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEec
Confidence            88888754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.98  E-value=6.4e-08  Score=84.94  Aligned_cols=193  Identities=12%  Similarity=0.116  Sum_probs=119.9

Q ss_pred             cCCCEEEEE-ECCCeEEEEEccCCCCC--ceeEec-----CC-CCCCeeEEEEeeCCCeEEEEecC------CcEEEEec
Q 018806          109 QHKHIVAFI-SGSTQVIVRDYEDSEGK--DACILT-----SD-SQRDVKVLEWRPNGGRSLSVGCK------GGICIWAP  173 (350)
Q Consensus       109 p~g~~la~~-s~d~~i~iw~~~~~~~~--~~~~~~-----~~-~~~~v~~~~~sp~~~~l~~~~~d------~~v~iwd~  173 (350)
                      +++++|+.. ..++.|.++|+.....+  ....+.     .. ....-..+..+|+| .++++..+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            788877764 46788999998543222  222220     00 01134556778997 66655444      67889988


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE-------------------eCC
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-------------------YES  234 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-------------------~d~  234 (350)
                      .+.+....+...                       ......-..+.|+|+++.++++.                   .. 
T Consensus       172 ~T~~v~~~~~~~-----------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~-  227 (462)
T 2ece_A          172 YSFEPLGKWEID-----------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG-  227 (462)
T ss_dssp             TTCCEEEECCSB-----------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC-
T ss_pred             CCCeEEEEEccC-----------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC-
Confidence            744332222111                       11112345688999999888874                   24 


Q ss_pred             CeEEEEeCCCCCceeeeecC---CCeEEEEE--cCCCCEEEEEe------cCCeEEEEeCCCCcee--cc---cc-----
Q 018806          235 SSFTIWDVAQGLGTPIRRGF---GGLSILKW--SPTGDYFFAAK------FDGTFYLWETNTWTSE--PW---SS-----  293 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~---~~v~~~~~--sp~g~~l~~~~------~d~~v~iwd~~~~~~~--~~---~~-----  293 (350)
                      .+|.+||+.+++......-.   .....+.|  +|+|+++++++      .+++|.+|..+.++..  +.   ..     
T Consensus       228 d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~  307 (462)
T 2ece_A          228 NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG  307 (462)
T ss_dssp             CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCS
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccc
Confidence            49999999987654433321   23455655  99999987766      4568877766544321  10   00     


Q ss_pred             -----------CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          294 -----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       294 -----------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                                 .......+.+|+||++|++++-+...+..+++.
T Consensus       308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                       024578899999999999999666677777764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.97  E-value=2.9e-07  Score=74.99  Aligned_cols=187  Identities=12%  Similarity=0.044  Sum_probs=122.1

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~  180 (350)
                      ...+.|+ ++.+..+.+.+|.|+++|+.+  ++....+ ..  .........+++++++.... ++.+.+||..+.+...
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~T--gkv~~~~-l~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLES--AQPVWME-RL--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSC--SSCSEEE-EC--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCC--CcEEeEE-CC--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence            5678887 456666677788999999865  5555554 22  23444333445566666655 6999999998433322


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee---cC---
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF---  254 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~~---  254 (350)
                                               ++....  .-+.++  +|++.|+.+..+ +.|.++|..+.+......   ..   
T Consensus       131 -------------------------ti~~~~--eGwGLt--~Dg~~L~vSdGs-~~l~~iDp~T~~v~~~I~V~~~g~~v  180 (268)
T 3nok_A          131 -------------------------TTRYSG--EGWGLC--YWNGKLVRSDGG-TMLTFHEPDGFALVGAVQVKLRGQPV  180 (268)
T ss_dssp             -------------------------EEECSS--CCCCEE--EETTEEEEECSS-SEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             -------------------------EEeCCC--ceeEEe--cCCCEEEEECCC-CEEEEEcCCCCeEEEEEEeCCCCccc
Confidence                                     222211  223444  578888877766 599999999887654322   21   


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--------------cCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------STSGFVTGATWDPEGRMILLAFAGSLTL  320 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~  320 (350)
                      ..+..+.|. +|+..+....++.|.+.|.++++.....              ......+.|||+|+++.|++++..=-.+
T Consensus       181 ~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~  259 (268)
T 3nok_A          181 ELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRL  259 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEE
T ss_pred             ccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCce
Confidence            245667777 7765555556889999999999974321              1224568999999988888776444577


Q ss_pred             EEEEe
Q 018806          321 GSIHF  325 (350)
Q Consensus       321 ~~~~~  325 (350)
                      +++++
T Consensus       260 ~ev~~  264 (268)
T 3nok_A          260 FEVRL  264 (268)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.97  E-value=5.5e-08  Score=84.52  Aligned_cols=194  Identities=16%  Similarity=0.104  Sum_probs=118.2

Q ss_pred             EecCCCEEEEEEC-----CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec----------CCcEEEE
Q 018806          107 WHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIW  171 (350)
Q Consensus       107 ~sp~g~~la~~s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------d~~v~iw  171 (350)
                      ..|+++++++...     ++.|.+.|..+  .+.+..+..+.. + . ++++|||++++++..          ++.|.+|
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            3579998888765     57888888853  555555543333 3 4 999999988877652          4789999


Q ss_pred             ecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC-CCeEEEEeCCCCCceee
Q 018806          172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI  250 (350)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~g~i~iwd~~~~~~~~~  250 (350)
                      |..+.+....+.....                   -..........++|+|||++++.+... ++.|.++|+.+++....
T Consensus       115 D~~t~~v~~~I~v~~g-------------------~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t  175 (386)
T 3sjl_D          115 DPVTLLPTADIELPDA-------------------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  175 (386)
T ss_dssp             CTTTCCEEEEEEETTC-------------------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             ECCCCeEEEEEECCCc-------------------cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            9985543333221100                   000001256789999999999988742 35999999999977654


Q ss_pred             eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC-Cceec----cc-cCCCCe-EEEEEc-CCCCEEEEEECCCeEEEE
Q 018806          251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSEP----WS-STSGFV-TGATWD-PEGRMILLAFAGSLTLGS  322 (350)
Q Consensus       251 ~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~-~~~~~----~~-~~~~~v-~~~~~s-~~g~~l~~~~~~~~~~~~  322 (350)
                      ..-.+.  ...+....+.+++.+.||.+.+.++.+ ++...    .. ....++ ...+|. ++|++++++.+  ..++.
T Consensus       176 I~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~--g~V~v  251 (386)
T 3sjl_D          176 LDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT--GKIHQ  251 (386)
T ss_dssp             EECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT--SEEEE
T ss_pred             EECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCC--CEEEE
Confidence            433221  122322344566667778777777765 44411    11 111222 234664 78876664443  36777


Q ss_pred             EEeCCC
Q 018806          323 IHFASK  328 (350)
Q Consensus       323 ~~~~~~  328 (350)
                      +++...
T Consensus       252 ~d~~~~  257 (386)
T 3sjl_D          252 IDLSSG  257 (386)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            777544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.96  E-value=3.1e-06  Score=70.33  Aligned_cols=196  Identities=6%  Similarity=-0.035  Sum_probs=126.0

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|++++..|+.+. ..+.|..++.+.  .. ...+..........++++++++.++.+.. .+.|.++++.. ..
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g--~~-~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~  112 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG--GE-PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQ  112 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS--CC-CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCC--CC-cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CC
Confidence            367899999877666655 467899999853  22 22222222246789999998677776665 48899988762 21


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC--CCeEEEEeCCCCCceeee-ecCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIR-RGFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--~g~i~iwd~~~~~~~~~~-~~~~  255 (350)
                      ...+                        .... ......++++|++..|+.+...  .+.|..+++.......+. ....
T Consensus       113 ~~~~------------------------~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~  167 (267)
T 1npe_A          113 RRVL------------------------FDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (267)
T ss_dssp             CEEE------------------------ECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             EEEE------------------------EECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCC
Confidence            1111                        0111 1356899999977766665543  358999988754433332 2235


Q ss_pred             CeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          256 GLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ....+++++++..|+.+. ..+.|.++|........+.........++.  ++..|+++..+...+..++...
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCCC
Confidence            678999999887776554 467999999986554433333344566665  4677887775556777777653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.95  E-value=4.6e-08  Score=84.72  Aligned_cols=199  Identities=9%  Similarity=0.097  Sum_probs=119.2

Q ss_pred             CeeEEEEecCCCEEEEEEC--CCeEEEEEccCCCCCceeEe------cCCCCCCeeEEEEeeCCCeEEEEe-c-----CC
Q 018806          101 DLQGVSWHQHKHIVAFISG--STQVIVRDYEDSEGKDACIL------TSDSQRDVKVLEWRPNGGRSLSVG-C-----KG  166 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~--d~~i~iw~~~~~~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~~~~-~-----d~  166 (350)
                      .+..++++|+|+++++...  ++.++||.++  +++. ..+      ...+-..+..++++++|+ |+++. .     +.
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP   93 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence            4789999999998887542  3436677775  2332 211      112446799999999954 54443 2     47


Q ss_pred             cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE----eCCCeEEEEeC
Q 018806          167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----YESSSFTIWDV  242 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~----~d~g~i~iwd~  242 (350)
                      .|.+||+..++....+...                   .....+ ...+..+++++++..++.+.    .+ +.|.+||.
T Consensus        94 ~i~~~d~~tg~~~~~~~~~-------------------~~~~~~-~~~~~~v~vd~~~g~~yvtd~~~~~~-~~i~v~d~  152 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLP-------------------PPITLS-NSFVNDLAVDLIHNFVYISDPAPDDK-AALIRVDL  152 (343)
T ss_dssp             EEEEEETTTTEEEEEEECC-------------------TTTSCT-TCCCCEEEEETTTTEEEEEECCSGGG-CEEEEEET
T ss_pred             eEEEEECCCCeEEEEEECC-------------------hhhccc-ccccceEEEecCCCEEEEEcCccCCC-CeEEEEEC
Confidence            8999998743322111100                   000111 23568999998755555443    45 59999999


Q ss_pred             CCCCceeeeec------------------------------CCCeEEEEEcCCCCEEEEEecCC-eEEEEeCC---CCce
Q 018806          243 AQGLGTPIRRG------------------------------FGGLSILKWSPTGDYFFAAKFDG-TFYLWETN---TWTS  288 (350)
Q Consensus       243 ~~~~~~~~~~~------------------------------~~~v~~~~~sp~g~~l~~~~~d~-~v~iwd~~---~~~~  288 (350)
                      .+++...+...                              ...+..++|+|+|+.|+++..++ .++.++..   .+..
T Consensus       153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL  232 (343)
T ss_dssp             TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred             CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence            87764433211                              02357899999999998877655 56555532   1111


Q ss_pred             --e------ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          289 --E------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       289 --~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                        .      ...++......++++++|++++ +......+..|+.
T Consensus       233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~v-a~~~~~~V~~~d~  276 (343)
T 2qe8_A          233 TDAELGSKIERYSEKPICDGISIDKDHNIYV-GDLAHSAIGVITS  276 (343)
T ss_dssp             CHHHHHTTCEEEEECCSCSCEEECTTCCEEE-EEGGGTEEEEEET
T ss_pred             ChhhhhcceEecccCCCCceEEECCCCCEEE-EccCCCeEEEEEC
Confidence              0      1112334567899999997655 4433346777765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.94  E-value=5.5e-07  Score=78.76  Aligned_cols=182  Identities=10%  Similarity=0.002  Sum_probs=109.1

Q ss_pred             CeeEEEEecCCCEEEEEEC--CCeEEEEEccCCCCCceeE-ecCCCCCCeeEEEEeeCCCeE-EEEecCCcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISG--STQVIVRDYEDSEGKDACI-LTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~--d~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~  176 (350)
                      ....+.|+|||++|+++..  ++.|.++| .+  ++.... +.  ...   ++.+.|++... ++.+.|+.+.++|. ..
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t--~~~~~~~i~--~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QG--GSSDDQLLS--SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CC--CCEEeEEcC--CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            3458999999999998874  47899998 64  444444 32  222   24556665444 44445788888888 43


Q ss_pred             CCCceee-----cccc--------ccc-ce-ecCCCCCceEEee----------ecc---------CCCCCceeeEEECC
Q 018806          177 GNAASVR-----SGAA--------SFL-GA-LSRGPGTRWTLVD----------FLR---------SQNGEQITALSWGP  222 (350)
Q Consensus       177 ~~~~~~~-----~~~~--------~~~-~~-~~~~~~~~~~~~~----------~~~---------~~~~~~v~~~~~sp  222 (350)
                      +......     ....        ... .. +.....+.....+          .+.         +........++++|
T Consensus       197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~  276 (373)
T 2mad_H          197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK  276 (373)
T ss_pred             cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence            3221111     0000        000 00 0000111111111          110         00012234478999


Q ss_pred             CCCeEEEEEeC---------CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCC-EEEEEe-cCCeEEEEeCCCCceecc
Q 018806          223 DGRYLASASYE---------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD-YFFAAK-FDGTFYLWETNTWTSEPW  291 (350)
Q Consensus       223 ~g~~l~~~~~d---------~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~d~~v~iwd~~~~~~~~~  291 (350)
                      +++.++.+..+         .+.|.++|..+++............+++|+|||+ .++++. .++.|.+||+.+++....
T Consensus       277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            99988876531         1489999999988766555556789999999999 677776 489999999999988644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.92  E-value=1e-06  Score=73.20  Aligned_cols=190  Identities=8%  Similarity=0.002  Sum_probs=120.7

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCce--eEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA  187 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~  187 (350)
                      |.+|+.+.. +.|+.++++.......  ..........+..++|+++++.++.+.. .+.|.+++.... ....+     
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~-----   73 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-EPTTI-----   73 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-CCEEE-----
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC-CcEEE-----
Confidence            345666554 4688888763221110  1111111235789999998777777666 488999988632 21111     


Q ss_pred             cccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-CCCeEEEEEcCCC
Q 018806          188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTG  266 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~g  266 (350)
                                         +... ......+++++++..|+.+...++.|.+++........+... ......++++|++
T Consensus        74 -------------------~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~  133 (267)
T 1npe_A           74 -------------------IRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (267)
T ss_dssp             -------------------ECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             -------------------EECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence                               1111 146789999998777777766556999999876544333332 2567899999976


Q ss_pred             CEEEEEec---CCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          267 DYFFAAKF---DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       267 ~~l~~~~~---d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ..|+.+..   .+.|+.++++......+. ........+++++++..|+++......+..++...
T Consensus       134 g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence            66655543   368989988754433332 22345789999999999998886666777777643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.91  E-value=1.4e-07  Score=85.59  Aligned_cols=209  Identities=11%  Similarity=0.024  Sum_probs=122.0

Q ss_pred             cCCCEEEEEEC-CCeEEEEEccCCCCCceeEecCCCCCCeeEEEE-e-eCCCeEEEEec------------------CCc
Q 018806          109 QHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-R-PNGGRSLSVGC------------------KGG  167 (350)
Q Consensus       109 p~g~~la~~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-s-p~~~~l~~~~~------------------d~~  167 (350)
                      +||++|..... +..|.+.|+++  .+....+..........+++ + |+++++++++.                  ++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t--~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDV--MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTT--TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCC--ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            38888888665 55688889864  44444333344456889998 5 99888877751                  257


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCC--------Cc---eee------EEECCCCCeEEEE
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG--------EQ---ITA------LSWGPDGRYLASA  230 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---v~~------~~~sp~g~~l~~~  230 (350)
                      +.+.|..+.+...++..+. . ...+..+++++|...........        ..   +.-      ..+.++|+.... 
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i-  253 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-N-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-  253 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-C-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE-
T ss_pred             EEEEECCCCeEEEEEEeCC-C-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE-
Confidence            8888887443333333221 1 11223333444443333222110        00   000      011223333221 


Q ss_pred             EeCCCeEEEEeCCC--CCc-eeeeecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCc------------eeccccC
Q 018806          231 SYESSSFTIWDVAQ--GLG-TPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT------------SEPWSST  294 (350)
Q Consensus       231 ~~d~g~i~iwd~~~--~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~------------~~~~~~~  294 (350)
                          +.|.+.|.++  ++. .....-.....++.++|||+++++++ .+.+|.++|+.+.+            ......-
T Consensus       254 ----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          254 ----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             ----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             ----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence                2478888887  433 23333334667899999999987665 57899999998653            1112233


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       295 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ......++|+|+| +++++..-+..+..|++..
T Consensus       330 G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            4567899999999 8888876666677777654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=4.8e-06  Score=67.19  Aligned_cols=193  Identities=14%  Similarity=0.088  Sum_probs=125.1

Q ss_pred             CeeEEEEecCCCEEEEEECC--CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGS--TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  177 (350)
                      -...+.|+. +.+..+.+..  ..|+.+|+.+  ++........  .........+.+++++.... ++.+.+||..+.+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t--gkv~~~~~l~--~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLET--GRILQRAEVP--PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTT--CCEEEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCC--CCEEEEEeCC--CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence            367888886 5555555554  4899999954  6655555322  23444444445567666655 6999999988433


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee---cC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF  254 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~~  254 (350)
                      ..                         .++....  .-..+  .++++.|+.+..+ +.|.++|..+.+......   +.
T Consensus        97 ~~-------------------------~ti~~~~--~Gwgl--t~dg~~L~vSdgs-~~l~~iDp~t~~~~~~I~V~~~g  146 (243)
T 3mbr_X           97 PR-------------------------ARFRYPG--EGWAL--TSDDSHLYMSDGT-AVIRKLDPDTLQQVGSIKVTAGG  146 (243)
T ss_dssp             EE-------------------------EEEECSS--CCCEE--EECSSCEEEECSS-SEEEEECTTTCCEEEEEECEETT
T ss_pred             EE-------------------------EEEeCCC--CceEE--eeCCCEEEEECCC-CeEEEEeCCCCeEEEEEEEccCC
Confidence            32                         2222211  12344  4577888777666 599999999887654322   11


Q ss_pred             ---CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--------------cCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          255 ---GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------STSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       255 ---~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                         ..+..+.|. +|+..+..-.+..|.+.|.++++.....              ......+.+||+|+++.|++++..=
T Consensus       147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence               345567765 7765555556789999999999974221              1123568999999999888887555


Q ss_pred             eEEEEEEeCCCC
Q 018806          318 LTLGSIHFASKP  329 (350)
Q Consensus       318 ~~~~~~~~~~~~  329 (350)
                      -.++.+++-..+
T Consensus       226 p~~~~v~~~~~~  237 (243)
T 3mbr_X          226 PMLYEIRLTPLP  237 (243)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CcEEEEEEecCC
Confidence            689999886544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.81  E-value=3.7e-07  Score=82.91  Aligned_cols=206  Identities=12%  Similarity=0.083  Sum_probs=121.0

Q ss_pred             ccCeeEEEE-e-cCCCEEEEEE------------------CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe
Q 018806           99 EVDLQGVSW-H-QHKHIVAFIS------------------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR  158 (350)
Q Consensus        99 ~~~V~~v~~-s-p~g~~la~~s------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  158 (350)
                      +.....+++ + |+++++++++                  .++.+.+.|.++  .+...++..+  +.-..++++|+|++
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t--~~v~~qI~Vg--g~pd~~~~spdGk~  208 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK--WEVAWQVLVS--GNLDNCDADYEGKW  208 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT--TEEEEEEEES--SCCCCEEECSSSSE
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC--CeEEEEEEeC--CCccceEECCCCCE
Confidence            345788888 5 9999998875                  245778888753  4444444322  24577889999888


Q ss_pred             EEEEecCC---------------cEEEEecCCCCCCceeecccccccce---ecCCC--CCceEEeeeccCCCCCceeeE
Q 018806          159 SLSVGCKG---------------GICIWAPSYPGNAASVRSGAASFLGA---LSRGP--GTRWTLVDFLRSQNGEQITAL  218 (350)
Q Consensus       159 l~~~~~d~---------------~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~v~~~  218 (350)
                      +++++.+.               .+.+.|.....  ..+..+.....+.   +....  ...  ....+..  .....++
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--~~v~~Gk~~~i~~V~VID~~~~~~~~--~~~~Ipv--g~~PhGv  282 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--KAIAAGDYQELNGVKVVDGRKEASSL--FTRYIPI--ANNPHGC  282 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH--HHHHHTCSEEETTEEEEECSGGGCCS--SEEEEEE--ESSCCCE
T ss_pred             EEEEecCcccCcchhhccccccceEEEeecccee--EeccCCCeeEECcEEEEeCcccCCce--eEEEEec--CCCceEE
Confidence            88877642               25555543110  0111111110000   00000  000  0111111  1355789


Q ss_pred             EECCCCCeEEEEEeCCCeEEEEeCCCCCc------------eeeeecCCCeEEEEEcCCCCEEE-EEecCCeEEEEeCCC
Q 018806          219 SWGPDGRYLASASYESSSFTIWDVAQGLG------------TPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNT  285 (350)
Q Consensus       219 ~~sp~g~~l~~~~~d~g~i~iwd~~~~~~------------~~~~~~~~~v~~~~~sp~g~~l~-~~~~d~~v~iwd~~~  285 (350)
                      .++|||+++++++....+|.++|+.+.+.            .....-......++|+|+| ++. +...|+.|.+||+++
T Consensus       283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            99999999988876656999999986521            1111223568899999999 554 555699999999976


Q ss_pred             ----------Ccee-ccccCCCC-----eEEEEEcCCCCEEEEEEC
Q 018806          286 ----------WTSE-PWSSTSGF-----VTGATWDPEGRMILLAFA  315 (350)
Q Consensus       286 ----------~~~~-~~~~~~~~-----v~~~~~s~~g~~l~~~~~  315 (350)
                                .+.. .+..|..+     -..+.++|||++|++++.
T Consensus       362 a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          362 AIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             HHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             hhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence                      2222 22222221     122356899999999873

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.78  E-value=9.6e-07  Score=84.62  Aligned_cols=194  Identities=11%  Similarity=0.048  Sum_probs=113.3

Q ss_pred             CeeEEEEe-cCCCEEEEEEC-CC----eEEEEEccCCCC-CceeEecCCCCCCeeEEEEeeCCCeEEEEecC-----CcE
Q 018806          101 DLQGVSWH-QHKHIVAFISG-ST----QVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGI  168 (350)
Q Consensus       101 ~V~~v~~s-p~g~~la~~s~-d~----~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v  168 (350)
                      .+...+|| |||++||.+.. +|    .|+++|++.  + +....   .-......++|+|||+.|+++..+     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~--g~~~l~~---~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD--PSQTIAD---KVSGTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC--TTCCCCC---CEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC--CCEeCCc---cccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            57889999 99999997654 22    488888864  3 21110   001124578999999999888765     246


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--CeEEEEeCCCCC
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL  246 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--g~i~iwd~~~~~  246 (350)
                      +++++..+.....+                     +  +..........+.|||||++|+......  ..|+++|+.++.
T Consensus       250 ~~~~lgt~~~~~~l---------------------v--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          250 WRHVMGKLQSEDVC---------------------L--YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             EEEETTSCGGGCEE---------------------E--EECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred             EEEECCCCchhcEE---------------------E--EecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence            66666532211000                     0  1111113456789999999998776431  278889998763


Q ss_pred             --c--eeeee-cCCCeEEEEEcCCCCEE-EEEecC----CeEEEEeCCCC-ceec-cccCCCC--eEEEEEcCCCCEEEE
Q 018806          247 --G--TPIRR-GFGGLSILKWSPTGDYF-FAAKFD----GTFYLWETNTW-TSEP-WSSTSGF--VTGATWDPEGRMILL  312 (350)
Q Consensus       247 --~--~~~~~-~~~~v~~~~~sp~g~~l-~~~~~d----~~v~iwd~~~~-~~~~-~~~~~~~--v~~~~~s~~g~~l~~  312 (350)
                        .  ..+.. ......++.|+. |+.| +....+    ..|..+|+.++ +... +..+...  +..+.+  .+..|++
T Consensus       307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~  383 (751)
T 2xe4_A          307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVV  383 (751)
T ss_dssp             TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEE
T ss_pred             CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEE
Confidence              3  33332 234455566554 5555 444433    36777887753 3344 4444443  444444  4666665


Q ss_pred             EE--CCCeEEEEEEe
Q 018806          313 AF--AGSLTLGSIHF  325 (350)
Q Consensus       313 ~~--~~~~~~~~~~~  325 (350)
                      ..  ++...++.+++
T Consensus       384 ~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          384 AGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEETTEEEEEEEEC
T ss_pred             EEEeCCEEEEEEEec
Confidence            54  45567777775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.72  E-value=2.2e-06  Score=75.71  Aligned_cols=183  Identities=9%  Similarity=-0.032  Sum_probs=106.1

Q ss_pred             CeeEEEEecCCCEEEEEEC--CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC-CeEEEEecCCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISG--STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      ....+.|+|||++|+++..  ++.|.+.|..+  .+....+..+.   .  ....|++ ..+++.+.||++.+.+.. ..
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t--~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~-~~  249 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG--KTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFA-DG  249 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECC-TT
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCC--CeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECC-CC
Confidence            3567899999999998874  57899999854  55444443221   1  2233443 333444445666655652 22


Q ss_pred             CCce-----eeccc--------ccccce--ecCCCCCceEEeeec----------c---------CCCCCceeeEEECCC
Q 018806          178 NAAS-----VRSGA--------ASFLGA--LSRGPGTRWTLVDFL----------R---------SQNGEQITALSWGPD  223 (350)
Q Consensus       178 ~~~~-----~~~~~--------~~~~~~--~~~~~~~~~~~~~~~----------~---------~~~~~~v~~~~~sp~  223 (350)
                      ....     +....        ......  +.....+.....+..          .         +........++++|+
T Consensus       250 ~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d  329 (426)
T 3c75_H          250 ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ  329 (426)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred             cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence            2111     00000        000000  000111222222210          0         000012234789999


Q ss_pred             CCeEEEEEeC---------CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCC-EEEEEe-cCCeEEEEeCCCCceecc
Q 018806          224 GRYLASASYE---------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD-YFFAAK-FDGTFYLWETNTWTSEPW  291 (350)
Q Consensus       224 g~~l~~~~~d---------~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~d~~v~iwd~~~~~~~~~  291 (350)
                      +++++....+         .+.|.++|..+.+......-......+.|+|||+ ++++.. .++.|.++|+.+++....
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence            9888776531         1379999999998776554445688999999999 888877 589999999999998544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.70  E-value=3.2e-06  Score=72.35  Aligned_cols=186  Identities=8%  Similarity=0.017  Sum_probs=115.3

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC-------------------CCCCeeEEEEeeCCCeEEEE
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-------------------SQRDVKVLEWRPNGGRSLSV  162 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~-------------------~~~~v~~~~~sp~~~~l~~~  162 (350)
                      ..+++|+++|+++.++..++.|..|+...  +. ...+...                   .......+++.+++..++++
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPN--SG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTT--TC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCC--Cc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            56788999998777778889898888642  22 2211100                   01347889999733566666


Q ss_pred             ecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC-CCCeEEEEEe---------
Q 018806          163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASY---------  232 (350)
Q Consensus       163 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~---------  232 (350)
                      ...+.+..+|... +....+..                     ...+........+++.+ +|+..++...         
T Consensus        98 d~~~~i~~~d~~~-g~~~~~~~---------------------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           98 DCYYHLSVVGSEG-GHATQLAT---------------------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             ETTTEEEEECTTC-EECEEEES---------------------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred             ECCCCEEEEeCCC-CEEEEecc---------------------cCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence            5655577777552 11111110                     01111113567899999 8876665432         


Q ss_pred             -------CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCc---eeccccCCCCeEEE
Q 018806          233 -------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT---SEPWSSTSGFVTGA  301 (350)
Q Consensus       233 -------d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~---~~~~~~~~~~v~~~  301 (350)
                             ..|.|..||..+++...+.........++|+|+|++|+.+ ..++.|++|++....   ...+....+ ...+
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi  234 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI  234 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred             eehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence                   1257899998777654443333456679999999977665 456899999987532   222222223 7889


Q ss_pred             EEcCCCCEEEEE
Q 018806          302 TWDPEGRMILLA  313 (350)
Q Consensus       302 ~~s~~g~~l~~~  313 (350)
                      +++++|++.++.
T Consensus       235 ~~d~~G~l~va~  246 (322)
T 2fp8_A          235 KRNADGHFWVSS  246 (322)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            999999866554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=88.56  Aligned_cols=145  Identities=10%  Similarity=0.033  Sum_probs=74.1

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccc
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  189 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (350)
                      ++..|++++.|+.++.||..+  ++..-....   +.+.+..+..++..+++++.|+.++.||...++........    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t--G~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~----   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT--GSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT----   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT--CCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC----
T ss_pred             eCCEEEEEcCCCEEEEEECCC--CCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc----
Confidence            677899999999999999854  665544432   45555556667556666667899999998754432221100    


Q ss_pred             cceecCCCCCceEEeeeccCCCCCce-eeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCE
Q 018806          190 LGALSRGPGTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDY  268 (350)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~  268 (350)
                                           ....+ .+..+. ++..+++++.+ |.++.||.++|+.........   ...++|++..
T Consensus        79 ---------------------~~~~~~~sp~~~-~~~~v~~g~~d-g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~  132 (369)
T 2hz6_A           79 ---------------------IPELVQASPCRS-SDGILYMGKKQ-DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSL  132 (369)
T ss_dssp             ---------------------HHHHHTTCSCC------CCCCEEE-EEEEEECCC-------------------------
T ss_pred             ---------------------CccccccCceEe-cCCEEEEEeCC-CEEEEEECCCCcEEEEecCCC---cccccccCCE
Confidence                                 00000 011111 34466777778 699999999998765443322   2345678888


Q ss_pred             EEEEecCCeEEEEeCCCCcee
Q 018806          269 FFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       269 l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      +++++.|+.|+.||.++++..
T Consensus       133 v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             EEEEEEEEEEECCCSSSSSCC
T ss_pred             EEEEecCCEEEEEECCCCCEE
Confidence            999999999999999999864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.61  E-value=3.9e-06  Score=79.50  Aligned_cols=207  Identities=11%  Similarity=0.108  Sum_probs=119.9

Q ss_pred             eEEEEecCCCEEEEEECCCe-------------------EEEEEccCCCCCceeEecCC-CC-------CCeeEEEEeeC
Q 018806          103 QGVSWHQHKHIVAFISGSTQ-------------------VIVRDYEDSEGKDACILTSD-SQ-------RDVKVLEWRPN  155 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~-------------------i~iw~~~~~~~~~~~~~~~~-~~-------~~v~~~~~sp~  155 (350)
                      ..++++|++.+|++++.++.                   |..+|..+  ++..-..... |.       ..+.......+
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~  315 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPID  315 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccC
Confidence            36889999999998887763                   88888854  6554443322 22       11222233335


Q ss_pred             CC---eEEEEecCCcEEEEecCCCCCCceeeccccccccee-------------c--CCCCCceEEeeeccCCCCCceee
Q 018806          156 GG---RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL-------------S--RGPGTRWTLVDFLRSQNGEQITA  217 (350)
Q Consensus       156 ~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~v~~  217 (350)
                      |+   .++.+..+|.++++|..+++...............+             .  ..............+.  .....
T Consensus       316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg--~~w~~  393 (689)
T 1yiq_A          316 GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA--HDWQP  393 (689)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS--SCSSC
T ss_pred             CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc--cCCCc
Confidence            54   455556679999999986654422221110000000             0  0000000011011111  12345


Q ss_pred             EEECCCCCeEEEEEeC--------------------------------------------CCeEEEEeCCCCCceeeeec
Q 018806          218 LSWGPDGRYLASASYE--------------------------------------------SSSFTIWDVAQGLGTPIRRG  253 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~d--------------------------------------------~g~i~iwd~~~~~~~~~~~~  253 (350)
                      ++++|+...+++...+                                            +|.|..||+.+++......+
T Consensus       394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~  473 (689)
T 1yiq_A          394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY  473 (689)
T ss_dssp             CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence            7888887777665321                                            15899999999987765555


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--cCCCCeEEEEEcCCCCEEEEE
Q 018806          254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      ......-.+...+..++.++.|+.|+.||.++|+.....  .......-+.|..+|++.++.
T Consensus       474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~  535 (689)
T 1yiq_A          474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTF  535 (689)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEE
Confidence            444444466667889999999999999999999985322  222223457788899865543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.61  E-value=8.3e-05  Score=60.77  Aligned_cols=201  Identities=8%  Similarity=0.096  Sum_probs=119.3

Q ss_pred             CeeEEEEecCCCEEEE-EECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ++..++|+|+++.|++ ...++.|...|..   ++....+...-....-.+++.+++..+++.-.++.+.++++......
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            6999999998776665 5566676666663   55555543333356888999888543343334588999988754431


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC---CCceeeee----
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIRR----  252 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~---~~~~~~~~----  252 (350)
                      ..+....                 ..............++|+|.++.|+++...+ ...+|.++.   .....+..    
T Consensus       105 ~~~~~~~-----------------~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A          105 KILKKIK-----------------IPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             EEEEEEE-----------------CCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHH
T ss_pred             eeeeeec-----------------cccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhh
Confidence            1111100                 0000111235678999999998888877763 445554431   11112221    


Q ss_pred             ----cCCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCcee--cccc-------CCCCeEEEEEcCCCCEEEEEECCCe
Q 018806          253 ----GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE--PWSS-------TSGFVTGATWDPEGRMILLAFAGSL  318 (350)
Q Consensus       253 ----~~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~~--~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~  318 (350)
                          ....+..++++|. +++++....++.|.++|.+..-..  .+..       .-...-.|+|.++|++.+ .+... 
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n-  244 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPN-  244 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTT-
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCc-
Confidence                1245789999996 455566667789999997754222  2221       113568999999998555 45442 


Q ss_pred             EEEEEE
Q 018806          319 TLGSIH  324 (350)
Q Consensus       319 ~~~~~~  324 (350)
                      .+|.++
T Consensus       245 ~~y~f~  250 (255)
T 3qqz_A          245 RFYRFT  250 (255)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            555543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.54  E-value=8.3e-06  Score=77.08  Aligned_cols=205  Identities=10%  Similarity=0.073  Sum_probs=122.1

Q ss_pred             eEEEEecCCCEEEEEECCC-------------------eEEEEEccCCCCCceeEecCC-CC-------CCeeEEEEeeC
Q 018806          103 QGVSWHQHKHIVAFISGST-------------------QVIVRDYEDSEGKDACILTSD-SQ-------RDVKVLEWRPN  155 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~-------------------~i~iw~~~~~~~~~~~~~~~~-~~-------~~v~~~~~sp~  155 (350)
                      ..++++|++.+|+.++.++                   .|..+|..+  ++..-.+... |.       ....-+....+
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIA  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccC
Confidence            4678999999998877664                   477777744  6554443222 21       12222334456


Q ss_pred             C---CeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEE-------------eeeccCCCCCceeeEE
Q 018806          156 G---GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL-------------VDFLRSQNGEQITALS  219 (350)
Q Consensus       156 ~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~  219 (350)
                      |   ..++.+..+|.++++|..+++....+..........+.  ..+....             .....+.  ..-..++
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~--~~w~~~a  399 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGA--HNWHPMS  399 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCS--SCSSCCE
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCccEECcCcccc--cCCCCce
Confidence            6   34556666899999999866554333221100000000  0000000             0001111  1124678


Q ss_pred             ECCCCCeEEEEEeC------------------------------------------CCeEEEEeCCCCCceeeeecCCCe
Q 018806          220 WGPDGRYLASASYE------------------------------------------SSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       220 ~sp~g~~l~~~~~d------------------------------------------~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                      ++|++..+++...+                                          .|.|..||+.+++......+...+
T Consensus       400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~  479 (677)
T 1kb0_A          400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW  479 (677)
T ss_dssp             EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred             EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC
Confidence            88888877765431                                          158999999999877666555555


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc--cCCCCeEEEEEcCCCCEEEEE
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      ....+..++..++.++.|+.+++||.++++.....  .+.....-+.|..+|+.+++.
T Consensus       480 ~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          480 NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence            55567778888988999999999999999985322  222333456778889766554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.54  E-value=1.4e-06  Score=75.72  Aligned_cols=88  Identities=3%  Similarity=-0.110  Sum_probs=65.3

Q ss_pred             EEECCCCCeEEEEEe---C-----CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEE-EEEe-cCCeEEEEeCCCCc
Q 018806          218 LSWGPDGRYLASASY---E-----SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF-FAAK-FDGTFYLWETNTWT  287 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~---d-----~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~-~d~~v~iwd~~~~~  287 (350)
                      ++++|++++++.+..   .     .+.+.++|+.+.+......-......++|+|||+.+ ++.. .+++|.++|+.+++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            789999998887643   1     125669999998776544434468899999999854 5555 48999999999999


Q ss_pred             eeccccCCCCeEEEEEcC
Q 018806          288 SEPWSSTSGFVTGATWDP  305 (350)
Q Consensus       288 ~~~~~~~~~~v~~~~~s~  305 (350)
                      ......-....+.+++.+
T Consensus       349 vv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          349 DQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEEECCCCSCCCEEECCC
T ss_pred             EEEEEECCCCCCEEEeec
Confidence            866555555567777765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.52  E-value=3.9e-05  Score=65.48  Aligned_cols=194  Identities=10%  Similarity=0.070  Sum_probs=108.0

Q ss_pred             CeeEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecC---C-CCCCeeEEEEee-CCCeEEEEec----------
Q 018806          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTS---D-SQRDVKVLEWRP-NGGRSLSVGC----------  164 (350)
Q Consensus       101 ~V~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~---~-~~~~v~~~~~sp-~~~~l~~~~~----------  164 (350)
                      .+.++++++ +|+ |..+...+.+..++...  +. ...+..   + .......+++.+ +|..+++...          
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~--g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEG--GH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTC--EE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCC--CE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence            478899998 565 55555555577777542  22 111111   1 113467888888 7654444322          


Q ss_pred             -------CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeE
Q 018806          165 -------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF  237 (350)
Q Consensus       165 -------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i  237 (350)
                             .+.|..+|..... ...+                     ...+     .....++|+|+|+.|+.+...++.|
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~-~~~~---------------------~~~~-----~~p~gia~~~dg~~lyv~d~~~~~I  209 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKE-TTLL---------------------LKEL-----HVPGGAEVSADSSFVLVAEFLSHQI  209 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTE-EEEE---------------------EEEE-----SCCCEEEECTTSSEEEEEEGGGTEE
T ss_pred             ehcccCCCceEEEEeCCCCE-EEEe---------------------ccCC-----ccCcceEECCCCCEEEEEeCCCCeE
Confidence                   1445555543111 0000                     0001     2456799999999777664433599


Q ss_pred             EEEeCCCCC---ceeeeecCCCeEEEEEcCCCCEEEEEec----------CCeEEEEeCCCCcee-ccccC----CCCeE
Q 018806          238 TIWDVAQGL---GTPIRRGFGGLSILKWSPTGDYFFAAKF----------DGTFYLWETNTWTSE-PWSST----SGFVT  299 (350)
Q Consensus       238 ~iwd~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~~~~~----------d~~v~iwd~~~~~~~-~~~~~----~~~v~  299 (350)
                      .+|++....   ...+....+ ...+++.++|++.++...          .+.|..+|.. ++.. .+...    ...++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~  287 (322)
T 2fp8_A          210 VKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFE  287 (322)
T ss_dssp             EEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCC
T ss_pred             EEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccce
Confidence            999987532   222222233 788999999987666544          4678888875 4443 23222    23466


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          300 GATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       300 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      .+++. + ..|+++......+..+++..+.
T Consensus       288 ~~~~~-~-g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          288 QIQEH-D-GLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEEEE-T-TEEEEECSSCSEEEEEEC----
T ss_pred             EEEEe-C-CEEEEeecCCCceEEEeccccc
Confidence            77763 4 4566666445577777765443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.50  E-value=1.1e-05  Score=66.36  Aligned_cols=152  Identities=8%  Similarity=-0.060  Sum_probs=98.4

Q ss_pred             CeeEEEEeeCCCeEEEEec---CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC
Q 018806          146 DVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  222 (350)
Q Consensus       146 ~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  222 (350)
                      ....+.|++++ .++.++.   ++.|+++|+.+++....+..                       ..+  .....+++  
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------------------~~~--~fgeGi~~--   73 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-----------------------DDS--YFGEGLTL--   73 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-----------------------CTT--CCEEEEEE--
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-----------------------CCC--cceEEEEE--
Confidence            46799999985 5555443   48999999985543332211                       111  12233444  


Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeecC-CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc---cCC---
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STS---  295 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~---  295 (350)
                      +++.|+.++..++.+.++|..+.+........ ..  ...+++||+.++++..++.|+++|.++.+.....   ...   
T Consensus        74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence            46677777766679999999988766544322 22  2345668888887777889999999998864322   111   


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       296 ~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      ..+..+.|. +| .|++....+..+..++.....
T Consensus       152 ~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~  183 (266)
T 2iwa_A          152 IRLNELEYI-NG-EVWANIWQTDCIARISAKDGT  183 (266)
T ss_dssp             CCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCC
T ss_pred             ccceeEEEE-CC-EEEEecCCCCeEEEEECCCCc
Confidence            236788888 66 566666555688888876544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.47  E-value=6.9e-05  Score=63.49  Aligned_cols=194  Identities=13%  Similarity=0.089  Sum_probs=108.9

Q ss_pred             CeeEEEEecCCCEEEEEECCC--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  177 (350)
                      .+..++++++|+++++.....  .|..++.  .+++...............++..++ ..++++.. ++.|+++|.....
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~--~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVK--SDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEEC--TTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcC--CCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCc
Confidence            578999999999666544332  3444554  3344322221122223445555444 45555543 6878777765211


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC-CCc--eeeeecC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLG--TPIRRGF  254 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~-~~~--~~~~~~~  254 (350)
                      .........      +..         ...... ......+  +|+++.|+.+...++.|..|++.. +..  .......
T Consensus       150 ~~v~~~~~~------~~~---------~~~~~~-~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~  211 (306)
T 2p4o_A          150 GSIWLEHPM------LAR---------SNSESV-FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ  211 (306)
T ss_dssp             EEEEEECGG------GSC---------SSTTCC-SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES
T ss_pred             EeEEEECCc------ccc---------ccccCC-CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc
Confidence            000000000      000         000000 0133445  788888877766556999999875 332  1122222


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec---cccCCCCeEEEEEc---CCCCEEEEEECC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWD---PEGRMILLAFAG  316 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~s---~~g~~l~~~~~~  316 (350)
                      .....++++++|++.++....+.|.++|.. ++...   +.......++++|.   |+++.|+++..+
T Consensus       212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            356678999999876666667899999976 55422   22333568999999   899988887643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.44  E-value=0.00062  Score=58.78  Aligned_cols=193  Identities=7%  Similarity=-0.048  Sum_probs=124.4

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|++....|..+. ..+.|..++++.  .. ...+..........+++.+.++.++.+.. .+.|.+.++. +..
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g--~~-~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~  149 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNG--SN-VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAH  149 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CS-CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCS
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCC--CC-ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCc
Confidence            478999998777776655 567888888753  22 22222222345678999887677766655 4888888876 222


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-CeEEEEeCCCCCceeeee-cCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTPIRR-GFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-g~i~iwd~~~~~~~~~~~-~~~~  256 (350)
                      ...+                        +... ......++++|.+..|+.+.... +.|..+++.......+.. .-..
T Consensus       150 ~~~l------------------------~~~~-l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~  204 (349)
T 3v64_C          150 RKVL------------------------LWQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW  204 (349)
T ss_dssp             CEEE------------------------ECTT-CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC
T ss_pred             eEEE------------------------EeCC-CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence            1111                        1111 24578999999777777665543 589999987654444332 3356


Q ss_pred             eEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      ...++|+|++..|+.+. ..+.|..+|++......+. ........+++  ++..|+.+..+...+..++
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEE
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCCCeEEEEE
Confidence            78999999877776554 4678999998765443332 23445678888  3456777775556777776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.42  E-value=0.00046  Score=59.59  Aligned_cols=195  Identities=8%  Similarity=-0.026  Sum_probs=125.1

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~  180 (350)
                      .+|.+..+++ +|+.+ ....|+..+++   +.....+. ........++|++.++.++.+.. .+.|+.+++.... ..
T Consensus        36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~---g~~~~~~~-~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~  108 (349)
T 3v64_C           36 RSCKALGPEP-VLLFA-NRIDIRQVLPH---RSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VE  108 (349)
T ss_dssp             SCEEESSSCC-EEEEE-CBSCEEEECTT---SCCEEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CcccccccCc-eeEee-cccceEEEeCC---CCeeEEee-cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ce
Confidence            4555555543 44443 44457777764   22223332 23345889999987677777665 4888888876322 11


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSI  259 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~  259 (350)
                      .+.                        ... ......+++.+.+..|+.+....+.|.+.++.......+.. .......
T Consensus       109 ~~~------------------------~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~  163 (349)
T 3v64_C          109 EVV------------------------STG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  163 (349)
T ss_dssp             EEE------------------------CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred             EEE------------------------eCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence            111                        111 13557899998777776665544699999988665444443 3356789


Q ss_pred             EEEcCCCCEEEEEe-cC-CeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          260 LKWSPTGDYFFAAK-FD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       260 ~~~sp~g~~l~~~~-~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ++++|.+..|+... .. +.|+.++++......+. ........++|+|++..|+.+..+...|..+++...
T Consensus       164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            99999766665544 34 78999998765544433 234457899999999999998866678888887653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.42  E-value=2.8e-05  Score=74.48  Aligned_cols=152  Identities=11%  Similarity=-0.008  Sum_probs=97.9

Q ss_pred             CeeEEEEe-eCCCeEEEEecC-C----cEEEEecCCC-CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeE
Q 018806          146 DVKVLEWR-PNGGRSLSVGCK-G----GICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  218 (350)
Q Consensus       146 ~v~~~~~s-p~~~~l~~~~~d-~----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (350)
                      .+..++|| |||++++++... |    .|+++|+..+ ....   ..                     +.    .....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~---------------------~~----~~~~~~  226 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DK---------------------VS----GTNGEI  226 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CC---------------------EE----EECSCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---cc---------------------cc----CceeeE
Confidence            67889999 999888876553 2    4899998854 2110   00                     00    123578


Q ss_pred             EECCCCCeEEEEEeCC----CeEEEEeCCCCCce--eeee--cCCCeEEEEEcCCCCEEEEEec---CCeEEEEeCCCCc
Q 018806          219 SWGPDGRYLASASYES----SSFTIWDVAQGLGT--PIRR--GFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWT  287 (350)
Q Consensus       219 ~~sp~g~~l~~~~~d~----g~i~iwd~~~~~~~--~~~~--~~~~v~~~~~sp~g~~l~~~~~---d~~v~iwd~~~~~  287 (350)
                      +|+|||+.|++...+.    ..|+++++.+++..  .+..  .......+.|+|||++|+..+.   ...|+++|+.+++
T Consensus       227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred             EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence            9999999998887652    16888898877532  2322  2244668899999999876653   3478999998763


Q ss_pred             --e--eccc-cCCCCeEEEEEcCCCCEEEEEECC----CeEEEEEEeC
Q 018806          288 --S--EPWS-STSGFVTGATWDPEGRMILLAFAG----SLTLGSIHFA  326 (350)
Q Consensus       288 --~--~~~~-~~~~~v~~~~~s~~g~~l~~~~~~----~~~~~~~~~~  326 (350)
                        .  ..+. .......++.|+. |+.|++.++.    ...++.+++.
T Consensus       307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred             CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence              3  3333 2344556666554 6666555532    3578888765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.42  E-value=0.00052  Score=60.12  Aligned_cols=193  Identities=7%  Similarity=-0.048  Sum_probs=122.9

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|++.+..|+.+. ..+.|..++++.   .....+..........+++.+.++.|+.+.. .+.|.+.++. +..
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g---~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~  192 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNG---SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAH  192 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS---CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT-SCS
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCC---CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCc
Confidence            578999998776666654 567788888753   2222222222334678899887677766655 4777777765 221


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-CeEEEEeCCCCCceeeee-cCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTPIRR-GFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-g~i~iwd~~~~~~~~~~~-~~~~  256 (350)
                      ...+                        +... ......++++|.+..|+.+.... +.|..+++.......+.. .-..
T Consensus       193 ~~~l------------------------~~~~-l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~  247 (386)
T 3v65_B          193 RKVL------------------------LWQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW  247 (386)
T ss_dssp             CEEE------------------------ECSS-CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             eEEe------------------------ecCC-CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence            1111                        1111 24678999999877777766543 589999987655444433 3356


Q ss_pred             eEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          257 LSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      ...++|+|++..|+.+ ...+.|..+|++......+. ........+++  ++..|+.+..+...|..++
T Consensus       248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEE
T ss_pred             eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCCCeEEEEE
Confidence            7899999887777655 44678999998765443332 23345678888  3446776765556777776

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.41  E-value=0.00064  Score=57.80  Aligned_cols=186  Identities=10%  Similarity=0.032  Sum_probs=119.6

Q ss_pred             EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC---CCCceeeccccc
Q 018806          113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAAS  188 (350)
Q Consensus       113 ~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~---~~~~~~~~~~~~  188 (350)
                      +|+.+ ....|+..+++.  ......+  ........++|++.++.++.+.. .+.|..+++...   .....+      
T Consensus         3 ~ll~~-~~~~I~~i~~~~--~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~------   71 (316)
T 1ijq_A            3 YLFFT-NRHEVRKMTLDR--SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------   71 (316)
T ss_dssp             EEEEE-CBSSEEEEETTS--CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------
T ss_pred             EEEEE-CCCeEEEEECCC--cceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE------
Confidence            34444 345688888864  2222222  23456889999998777777766 488888887631   111110      


Q ss_pred             ccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCC
Q 018806          189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGD  267 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~  267 (350)
                                        +... ......+++.+.+..|+.+...++.|.+++........+.. .......++++|.+.
T Consensus        72 ------------------~~~~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g  132 (316)
T 1ijq_A           72 ------------------ISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  132 (316)
T ss_dssp             ------------------ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             ------------------EeCC-CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence                              1111 13567899988776776665444699999988655444443 346678999999777


Q ss_pred             EEEEEecC--CeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          268 YFFAAKFD--GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       268 ~l~~~~~d--~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      .|+.+...  +.|..++++......+. ..-.....+++++++..|+.+......|..+++...
T Consensus       133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            66555443  68999988754443332 234567899999999999988866678888887643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.38  E-value=0.00076  Score=57.33  Aligned_cols=198  Identities=5%  Similarity=-0.079  Sum_probs=122.2

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCC-CCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSE-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  177 (350)
                      .+.+++|++++..|+.+. ..+.|..++++... +.....+....-.....+++.+.++.++.+.. .+.|.+.++. +.
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~  109 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GV  109 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CC
Confidence            478999999876666655 46788888875310 01222222222235688999876666666654 5889988876 22


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-CeEEEEeCCCCCceeeee-cCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTPIRR-GFG  255 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-g~i~iwd~~~~~~~~~~~-~~~  255 (350)
                      ....+                        +... ......++++|.+..|+.+.... +.|...++.......+.. .-.
T Consensus       110 ~~~~~------------------------~~~~-~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~  164 (316)
T 1ijq_A          110 KRKTL------------------------FREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  164 (316)
T ss_dssp             SEEEE------------------------EECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred             ceEEE------------------------EECC-CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCC
Confidence            11111                        1111 24678999999777776665542 589988887544433332 335


Q ss_pred             CeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceecccc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          256 GLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ....+++++++..|+.+. ..+.|..+|++......+..   .......+++.  +..|+.+..+...+..++..
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCC
Confidence            678999999887776654 46799999998654443322   22346778874  45677776555677777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.36  E-value=1e-07  Score=83.46  Aligned_cols=168  Identities=12%  Similarity=-0.053  Sum_probs=83.9

Q ss_pred             EecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCee-EEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecc
Q 018806          107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG  185 (350)
Q Consensus       107 ~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  185 (350)
                      +..++..+++++.|+.++.||..+  ++............+. +..+. ++..+++++.++.++.||...++....+.  
T Consensus        45 ~~~~g~~~v~~s~dg~l~a~d~~t--G~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~--  119 (369)
T 2hz6_A           45 THVEEPAFLPDPNDGSLYTLGSKN--NEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS--  119 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------
T ss_pred             eEcCCCEEEEeCCCCEEEEEECCC--CceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec--
Confidence            345677777778999999999854  4433333211111111 11111 23566667778999999998554422211  


Q ss_pred             cccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCC
Q 018806          186 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT  265 (350)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~  265 (350)
                                             .+  .   ...++|++..+++++.+ |.|+.||.++++........ .....+++.+
T Consensus       120 -----------------------~~--~---~~~~~p~~~~v~~~~~d-g~v~a~d~~tG~~~W~~~~~-~~~~~~~~~~  169 (369)
T 2hz6_A          120 -----------------------SA--F---ADSLSPSTSLLYLGRTE-YTITMYDTKTRELRWNATYF-DYAASLPEDD  169 (369)
T ss_dssp             -----------------------------------------EEEEEEE-EEEECCCSSSSSCCCEEEEE-EECCBCCCCC
T ss_pred             -----------------------CC--C---cccccccCCEEEEEecC-CEEEEEECCCCCEEEeEecc-cccCccccCC
Confidence                                   11  1   13456688888888888 69999999999765433211 1122333443


Q ss_pred             C---CEEEEEecCCeEEEEeCCCCceeccccCCCCeE-EEEEcCCCCE
Q 018806          266 G---DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT-GATWDPEGRM  309 (350)
Q Consensus       266 g---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~-~~~~s~~g~~  309 (350)
                      .   ..+++++.||.|+.||.++++.........++. ...++++|..
T Consensus       170 ~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          170 VDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             TTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             ccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            2   457778889999999999998754333444443 3456667753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.32  E-value=0.00051  Score=59.07  Aligned_cols=191  Identities=13%  Similarity=0.121  Sum_probs=116.7

Q ss_pred             CeeEEEEecCCCEEEEE------------ECCCeEEEEEccCCCCCcee-EecCC----CCCCeeEEEEee--CCC-eEE
Q 018806          101 DLQGVSWHQHKHIVAFI------------SGSTQVIVRDYEDSEGKDAC-ILTSD----SQRDVKVLEWRP--NGG-RSL  160 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~------------s~d~~i~iw~~~~~~~~~~~-~~~~~----~~~~v~~~~~sp--~~~-~l~  160 (350)
                      ..-.+...|+|..++++            ..+|.|.++|.+..+.+... .+...    .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            35567778887655444            16899999998643332211 12111    123567777766  343 344


Q ss_pred             EEec---CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-----
Q 018806          161 SVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----  232 (350)
Q Consensus       161 ~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-----  232 (350)
                      ++..   +.++.+|++...+.                     ...+...+.+.......++++.++|+++++...     
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~---------------------~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~  189 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEK---------------------SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDP  189 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTT---------------------EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSH
T ss_pred             EEECCCCCCeEEEEEEECCCC---------------------EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCc
Confidence            4433   36777887764332                     122344455544457889999999987766431     


Q ss_pred             -----------CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-Cce--eccccCCCC
Q 018806          233 -----------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT-WTS--EPWSSTSGF  297 (350)
Q Consensus       233 -----------d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~-~~~--~~~~~~~~~  297 (350)
                                 ..|.|..+|.  ++...+...-.....++|+||++.|+.+. ..+.|+.|+++. ++.  .......+.
T Consensus       190 ~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~  267 (355)
T 3sre_A          190 YLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL  267 (355)
T ss_dssp             HHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred             ccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCC
Confidence                       1245666654  44444444456788999999999887665 578999999863 433  122234566


Q ss_pred             eEEEEEcC-CCCEEEEEE
Q 018806          298 VTGATWDP-EGRMILLAF  314 (350)
Q Consensus       298 v~~~~~s~-~g~~l~~~~  314 (350)
                      .-.++..+ +|++.+++.
T Consensus       268 PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEECTTTCCEEEEEE
T ss_pred             CceEEEeCCCCcEEEEec
Confidence            78899999 598877554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.00099  Score=58.65  Aligned_cols=190  Identities=11%  Similarity=0.010  Sum_probs=123.1

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeeccccccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      .+|+.+ ....|+..+++.  ... ..+. .....+..++|++.++.++.+.. .+.|+.+++.........        
T Consensus        84 ~~ll~~-~~~~I~~i~l~~--~~~-~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~--------  150 (400)
T 3p5b_L           84 AYLFFT-NRHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--------  150 (400)
T ss_dssp             CEEEEE-ETTEEEEECTTS--CSC-EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC--------
T ss_pred             ceeEEe-ccceeEEEccCC--cce-eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc--------
Confidence            345544 446788888753  222 2222 34567899999997677777665 488888887621100000        


Q ss_pred             ceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCCEE
Q 018806          191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF  269 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l  269 (350)
                                   ...+... ......+++.+.+..|+.+....+.|.+.+++......+.. .......+++.|.+.+|
T Consensus       151 -------------~~~~~~~-~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l  216 (400)
T 3p5b_L          151 -------------DTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  216 (400)
T ss_dssp             -------------EEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred             -------------eEEEeCC-CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence                         0001111 24678899998667777666554699999998766555443 34568899999977777


Q ss_pred             EEEec--CCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          270 FAAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       270 ~~~~~--d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      +....  .+.|+..+++......+. ..-.....+++++++..|+.+......|+.+++...
T Consensus       217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            65543  368999998765554443 233567899999999999999866678888887654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.28  E-value=0.00045  Score=60.56  Aligned_cols=194  Identities=8%  Similarity=-0.018  Sum_probs=123.5

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCce
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS  181 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~  181 (350)
                      +|.+..+. .+|+.+ ....|+.++++.  .. ...+. ........++|.+.++.|+.+.. .+.|+.+++.... ...
T Consensus        80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~--~~-~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~  152 (386)
T 3v65_B           80 SCKALGPE-PVLLFA-NRIDIRQVLPHR--SE-YTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEE  152 (386)
T ss_dssp             CEEECSSC-CEEEEE-CBSCEEEECTTS--CC-CEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEE
T ss_pred             eECCcccc-ceeEee-cCccceeeccCC--Cc-EEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEE
Confidence            34444443 345443 445677777753  22 22222 23346889999987677777665 4888888876221 111


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSIL  260 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~  260 (350)
                      +                        +... ......+++.+.+..|+.+....+.|.+.++.......+.. .......+
T Consensus       153 ~------------------------~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi  207 (386)
T 3v65_B          153 V------------------------VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI  207 (386)
T ss_dssp             E------------------------ECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred             E------------------------EeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence            1                        1111 13557889998777776665544689999987665444443 33668899


Q ss_pred             EEcCCCCEEEEEe-cC-CeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          261 KWSPTGDYFFAAK-FD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       261 ~~sp~g~~l~~~~-~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      +++|.+..|+... .. +.|+.++++......+. ........++|+|++..|+.+......|+.+++...
T Consensus       208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            9999777766554 34 68999998765544333 233457899999999999998866678888876543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.26  E-value=0.00023  Score=60.18  Aligned_cols=191  Identities=14%  Similarity=0.084  Sum_probs=105.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC--cEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~  178 (350)
                      ....++|+++|+++++-..++.|..|+.+   +.......  .......+++.++|+.+++....+  .|..++...+. 
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~---g~~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-  106 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPD---GNQQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-  106 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT---CCEEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCC---CceEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-
Confidence            36789999999966665578888888864   33222222  235688999999977444433333  35555544221 


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee-e------
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-R------  251 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~-~------  251 (350)
                      ...+                      ..+..  ......++..+++..+++.... |.|+.+|..++..... .      
T Consensus       107 ~~~~----------------------~~~~~--~~~~~g~~~~~~~~~~v~d~~~-g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A          107 VETL----------------------LTLPD--AIFLNGITPLSDTQYLTADSYR-GAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             EEEE----------------------EECTT--CSCEEEEEESSSSEEEEEETTT-TEEEEEETTTTEEEEEEECGGGSC
T ss_pred             EEEE----------------------EeCCC--ccccCcccccCCCcEEEEECCC-CeEEEEeCCCCcEeEEEECCcccc
Confidence            1111                      01111  1223445555554434333335 6999999876422111 0      


Q ss_pred             ----ecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-Cce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 018806          252 ----RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT-WTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       252 ----~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~-~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                          ........+  ++++++|+++. ..+.|+.|++.. ++.  ............++++++|++. ++......+..+
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~-va~~~~~~V~~~  238 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY-GATHIYNSVVRI  238 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE-EECBTTCCEEEE
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEE-EEeCCCCeEEEE
Confidence                011234445  88888776554 567999999875 433  1111112345778999999754 454333445555


Q ss_pred             Ee
Q 018806          324 HF  325 (350)
Q Consensus       324 ~~  325 (350)
                      +.
T Consensus       239 ~~  240 (306)
T 2p4o_A          239 AP  240 (306)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.24  E-value=0.00013  Score=59.54  Aligned_cols=151  Identities=13%  Similarity=0.003  Sum_probs=94.8

Q ss_pred             CCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC
Q 018806          145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  224 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  224 (350)
                      .....+.|+. +..+++.+.++.|+++|+.+++....+ .                       .    .........+++
T Consensus        55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-----------------------~----~~~FgeGit~~g  105 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-----------------------L----GNIFAEGLASDG  105 (268)
T ss_dssp             CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-----------------------C----TTCCEEEEEECS
T ss_pred             cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-----------------------C----CCcceeEEEEeC
Confidence            3457888873 244444444688999999866554433 1                       1    233332233456


Q ss_pred             CeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc---cCC---CCe
Q 018806          225 RYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STS---GFV  298 (350)
Q Consensus       225 ~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~---~~v  298 (350)
                      +.|+.....++.+.+||.++.+..........-..++  +|++.|+.+..++.|+++|.++.+.....   ...   ..+
T Consensus       106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            6776666555799999999988776554433333444  57888888777889999999998874322   222   234


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          299 TGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       299 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ..+.|. +|+ |.+..-.+..+..++....
T Consensus       184 NeLe~~-dG~-lyanvw~s~~I~vIDp~TG  211 (268)
T 3nok_A          184 NELECA-NGV-IYANIWHSSDVLEIDPATG  211 (268)
T ss_dssp             EEEEEE-TTE-EEEEETTCSEEEEECTTTC
T ss_pred             cccEEe-CCE-EEEEECCCCeEEEEeCCCC
Confidence            667777 664 5556544456777766543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.24  E-value=0.0007  Score=57.56  Aligned_cols=188  Identities=11%  Similarity=0.045  Sum_probs=120.4

Q ss_pred             EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccc
Q 018806          113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG  191 (350)
Q Consensus       113 ~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~  191 (350)
                      +|+. +....|+.++++...... .... ........++|.+.++.++.+.. .+.|..+++........+..       
T Consensus         6 ~ll~-~~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-------   75 (318)
T 3sov_A            6 LLLY-ANRRDLRLVDATNGKENA-TIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-------   75 (318)
T ss_dssp             EEEE-ECEEEEEEEETTCTTSCC-EEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-------
T ss_pred             EEEE-EccCeEEEEECCCCceEE-EEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-------
Confidence            3444 345678888886432111 2221 12235778999987677776665 48888888763321111100       


Q ss_pred             eecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEEEEEcCCCCEEE
Q 018806          192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFF  270 (350)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~  270 (350)
                                       .. ......+++.+.+..|+.+....+.|.++++.......+. ........+++.|.+..|+
T Consensus        76 -----------------~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly  137 (318)
T 3sov_A           76 -----------------SG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY  137 (318)
T ss_dssp             -----------------EC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEE
T ss_pred             -----------------CC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEE
Confidence                             00 1356789998866666666544469999999866544443 3346678999999766666


Q ss_pred             EEec--CCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          271 AAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       271 ~~~~--d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ....  .+.|+.++++......+. ..-.....++|++++..|+.+......|+.+++...
T Consensus       138 ~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          138 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            5552  578999988754443332 223456899999999999999877778888887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.21  E-value=0.00014  Score=59.24  Aligned_cols=152  Identities=11%  Similarity=0.047  Sum_probs=94.2

Q ss_pred             CCeeEEEEeeCCCeEEEEecCC--cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC
Q 018806          145 RDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  222 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  222 (350)
                      .....+.|+ ++..+.+.|.+|  .|+++|+.+++....+..                           +.........+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l---------------------------~~~~FgeGit~   94 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL---------------------------GKRYFGEGISD   94 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC---------------------------CTTCCEEEEEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec---------------------------CCccceeEEEE
Confidence            345888998 644444555554  899999985543332211                           12333333444


Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc---cCC---C
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STS---G  296 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~---~  296 (350)
                      ++..|+.....++.+.+||.++.+..........-..+  ++|++.|+.+..++.|+++|..+.+.....   ...   .
T Consensus        95 ~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A           95 WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence            56777777765579999999998877655443322333  467888877766788999999998874322   222   2


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      .+..+.|. +|+ |.+..-.+..+..++....
T Consensus       173 ~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          173 ELNELEWV-DGE-IFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             CEEEEEEE-TTE-EEEEETTSSEEEEECTTTC
T ss_pred             ccceeEEE-CCE-EEEEEccCCeEEEEECCCC
Confidence            34557776 664 5556644456777765443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.19  E-value=0.0023  Score=59.73  Aligned_cols=189  Identities=9%  Similarity=0.041  Sum_probs=127.9

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeeccccccc
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      .+|+.+ ....|+..+++.  ......+....-..+..++|++.++.++.+.. ++.|+.+++. +.....+.       
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~--~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~-------   75 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLET--NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVV-------   75 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSC--TTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------
T ss_pred             cEEEEE-eCCcEEEEECCC--CCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEE-------
Confidence            355554 567788889864  22222222223356889999998777777665 4888888876 22211111       


Q ss_pred             ceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEEEEEcCCCCEE
Q 018806          191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYF  269 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l  269 (350)
                                       ... ......+++.+.+..|+.+....+.|.+.++.......+. ..-.....+++.|....|
T Consensus        76 -----------------~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~l  137 (628)
T 4a0p_A           76 -----------------EFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM  137 (628)
T ss_dssp             -----------------CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEE
T ss_pred             -----------------eCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeE
Confidence                             111 1356789998887777777665579999999866554444 334567899999966566


Q ss_pred             EEEec--CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          270 FAAKF--DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       270 ~~~~~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      +....  .+.|...+++......+.........++++++++.|+.+..+...+..+++....
T Consensus       138 Y~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          138 YWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN  199 (628)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence            55542  5688888888766655555556788999999999999998777788888886543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.00046  Score=61.39  Aligned_cols=197  Identities=10%  Similarity=0.080  Sum_probs=111.4

Q ss_pred             cCeeEEEEecCCCEEEEEECC-C----eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEec
Q 018806          100 VDLQGVSWHQHKHIVAFISGS-T----QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAP  173 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d-~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~  173 (350)
                      .....++|+++|++|+.+... +    .+.+.+.+ ........+.  .......++++|++..++++.. .+.|..++.
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            357899999999977666542 1    23333432 1111111221  1234677889994455665554 588888887


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC--Cc---e
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LG---T  248 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~--~~---~  248 (350)
                      ..... ..                      ......  ......++|+|+|++|+.+...++.|..++....  ..   .
T Consensus       256 ~~~~~-~~----------------------~~~~~~--~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~  310 (430)
T 3tc9_A          256 TTQET-TP----------------------LFTIQD--SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY  310 (430)
T ss_dssp             TTTEE-EE----------------------EEECSS--SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred             CCCcE-EE----------------------EEEcCC--CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence            62211 00                      001111  1356789999999977776655469999876532  11   1


Q ss_pred             eeeec---------------CCCeE-EEEEc--------CCCCEEEEEecCCeEEEEeCCCCceeccccC----------
Q 018806          249 PIRRG---------------FGGLS-ILKWS--------PTGDYFFAAKFDGTFYLWETNTWTSEPWSST----------  294 (350)
Q Consensus       249 ~~~~~---------------~~~v~-~~~~s--------p~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~----------  294 (350)
                      .+...               -.... .++..        ++|.+.++-..++.|+.++ .+++...+.+.          
T Consensus       311 ~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~d  389 (430)
T 3tc9_A          311 IVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYND  389 (430)
T ss_dssp             EEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBC
T ss_pred             EEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccC
Confidence            11111               01122 44443        3455555555677899888 44555433221          


Q ss_pred             --------CCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          295 --------SGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       295 --------~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                              -.....++++|++..|+++..+...+..+..
T Consensus       390 G~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          390 GDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence                    1257899999976677777755556766654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=0.00013  Score=65.01  Aligned_cols=154  Identities=12%  Similarity=0.139  Sum_probs=97.4

Q ss_pred             CeeEEEEee-CCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCC
Q 018806          146 DVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  224 (350)
Q Consensus       146 ~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  224 (350)
                      ....++|+| +++.|+++...+.|+.+|+... ....                         +.. .......++|+++|
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v~~-------------------------~~~-~~~~P~~ia~d~~G  190 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YVST-------------------------VYS-GLSKVRTICWTHEA  190 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EEEE-------------------------EEC-CCSCEEEEEECTTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EEEE-------------------------Eec-CCCCcceEEEeCCC
Confidence            457889997 4456666555577777877621 1111                         111 12468899999999


Q ss_pred             CeEEEEEeCCC----eEEEEeCCCCCce--eeeecCCCeEEEEEcC-CCCEEEEEecCCeEEEEeCCCCceeccc--cCC
Q 018806          225 RYLASASYESS----SFTIWDVAQGLGT--PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS--STS  295 (350)
Q Consensus       225 ~~l~~~~~d~g----~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~  295 (350)
                      ++|+.+...++    .+.+++.. +...  ...........++++| +|.++++-..++.|+.++..++....+.  ...
T Consensus       191 ~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~  269 (430)
T 3tc9_A          191 DSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS  269 (430)
T ss_dssp             SEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             CEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence            97777665212    34444433 3222  2222234567788999 6766666666789999999877653322  222


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       296 ~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .....++|+|+|++|+++......++.++...
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            45688999999998888876666777776653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.13  E-value=0.0038  Score=54.93  Aligned_cols=198  Identities=5%  Similarity=-0.064  Sum_probs=123.4

Q ss_pred             cCeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCC-CceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      ..+.+++|++.+..|..+. ..+.|+.++++.... .....+..........+++.+.++.|+.+.. .+.|.+.+++ +
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g  190 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-G  190 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT-T
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC-C
Confidence            3688999999777777665 467788888753110 1122222223456788999886566666655 4888888876 2


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC-CCeEEEEeCCCCCceeeee-cC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRR-GF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~g~i~iwd~~~~~~~~~~~-~~  254 (350)
                      .....+                        +... ......+++.|.+..|+.+... .+.|...++.......+.. .-
T Consensus       191 ~~~~~l------------------------~~~~-~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l  245 (400)
T 3p5b_L          191 VKRKTL------------------------FREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  245 (400)
T ss_dssp             CSEEEE------------------------EECS-SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSC
T ss_pred             CceEEE------------------------EeCC-CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCC
Confidence            221111                        1111 2457899999977777666532 2589999988665544433 33


Q ss_pred             CCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceecccc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          255 GGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      .....+++++++..|+.+. ..+.|..+|++......+..   .......++.  ++..|+.+..+...|..++.
T Consensus       246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEES
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEc
Confidence            6788999999888877664 46789999998665544332   2234556666  45567766655556777763

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.09  E-value=0.00048  Score=58.03  Aligned_cols=181  Identities=7%  Similarity=0.074  Sum_probs=111.1

Q ss_pred             EEEecCCCEEEEEECC--------------CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEe--cCCcE
Q 018806          105 VSWHQHKHIVAFISGS--------------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGI  168 (350)
Q Consensus       105 v~~sp~g~~la~~s~d--------------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v  168 (350)
                      --++++|++|+.+...              ..|+..+++.  +. ...+..   .  ....|+++++.++.+.  .++.-
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg--~~-~~~l~~---~--~~~~~s~~g~~Iy~~~~~~~~~~  129 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG--HG-STVLDP---D--PCIYASLIGNYIYYLHYDTQTAT  129 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS--CC-CEEEEC---S--CEEEEEEETTEEEEEEESSSSCE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC--Cc-ceEeec---C--CccEEEEeCCEEEEEeecCCCCc
Confidence            4568999999988653              3455555542  32 233321   1  2237888988888876  24444


Q ss_pred             EEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce
Q 018806          169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  248 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~  248 (350)
                      .||.+...+.....                        +..+   .+  .+|+++++.|+..+....+|...++..+...
T Consensus       130 ~Iy~~~~dGs~~~~------------------------lt~~---~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~  180 (302)
T 3s25_A          130 SLYRIRIDGEEKKK------------------------IKNH---YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA  180 (302)
T ss_dssp             EEEEEETTSCCCEE------------------------EESS---CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred             eEEEEECCCCCeEE------------------------EeCC---Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence            45544432221111                        1111   12  4567889999887764358999998877655


Q ss_pred             eeeecCCCeEEEEEcCCCCEEEEEecC--CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          249 PIRRGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       249 ~~~~~~~~v~~~~~sp~g~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      .+..  +... ..++|++.+|+-...+  ..|..-+++......+...  .+  ..|+|+|++|+.+. .....++.+.+
T Consensus       181 ~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~  253 (302)
T 3s25_A          181 LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIFYQRGGDNPALCVVKN  253 (302)
T ss_dssp             EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEEEEECSSSCEEEEEET
T ss_pred             EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEEEEECCCCcEEEEEEC
Confidence            5543  2232 3466999998876543  3687888887766555432  23  34889999998875 33467888888


Q ss_pred             CCCC
Q 018806          326 ASKP  329 (350)
Q Consensus       326 ~~~~  329 (350)
                      ....
T Consensus       254 DG~~  257 (302)
T 3s25_A          254 DGTG  257 (302)
T ss_dssp             TSCC
T ss_pred             CCCc
Confidence            7654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.09  E-value=0.0032  Score=60.25  Aligned_cols=198  Identities=6%  Similarity=-0.057  Sum_probs=124.9

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCC-CceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  177 (350)
                      .+.+|+|++....|+.+. ..+.|+.++++.... .....+..........|++.+.++.|+.+.. .+.|.+.++. +.
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~  503 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GV  503 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SS
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC-CC
Confidence            578899999766666554 457788888753111 1112222223456778999988777777666 4888888876 22


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-CeEEEEeCCCCCceeeeec-CC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTPIRRG-FG  255 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-g~i~iwd~~~~~~~~~~~~-~~  255 (350)
                      ....+                        +.. .......|++.|.+.+|+.+.... +.|...++.......+... -.
T Consensus       504 ~~~~l------------------------~~~-~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~  558 (791)
T 3m0c_C          504 KRKTL------------------------FRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  558 (791)
T ss_dssp             SEEEE------------------------EEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred             eEEEE------------------------EeC-CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence            21111                        111 124678999999877777665432 4899999886655544433 36


Q ss_pred             CeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          256 GLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ....|++++.+..|+.+. ..+.|..++++......+...   -.....|++  .+..|+.+......|+.++..
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCC
Confidence            788999998877776664 456899999977655444321   223445665  456888887666778877754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.08  E-value=0.0037  Score=53.05  Aligned_cols=196  Identities=7%  Similarity=-0.040  Sum_probs=122.2

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|++.+..|..+. ..+.|..++++...... .... ..-.....+++.+.++.++.+.. .+.|.++++. +..
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~-~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~  112 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSL  112 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEE-ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCS
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEc-CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-CCc
Confidence            467899999766666554 56788888875321111 1221 12235678899876666666655 5888888876 222


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-CCCeEEEEeCCCCCceeeee-cCCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR-GFGG  256 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~g~i~iwd~~~~~~~~~~~-~~~~  256 (350)
                      ...+.                        ... ......+++.|.+..|+.+.. ..+.|...++.......+.. .-..
T Consensus       113 ~~~l~------------------------~~~-~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~  167 (318)
T 3sov_A          113 RKVLF------------------------WQE-LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW  167 (318)
T ss_dssp             CEEEE------------------------CSS-CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             EEEEE------------------------eCC-CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            11111                        111 246789999997767766653 23589999987554444332 3356


Q ss_pred             eEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceecccc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          257 LSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ...++|++++..|+.+. ..+.|..+|++......+.. .......+++.  +..|+.+.-+...+..++..
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECC
Confidence            78999999877776654 46799999997655443332 34456677775  44666666555677777764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.06  E-value=0.0004  Score=65.47  Aligned_cols=72  Identities=10%  Similarity=0.048  Sum_probs=48.4

Q ss_pred             eEEEEec-CCCEEEEEECCC-----------eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEE
Q 018806          103 QGVSWHQ-HKHIVAFISGST-----------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGIC  169 (350)
Q Consensus       103 ~~v~~sp-~g~~la~~s~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~  169 (350)
                      ..+++.+ ++++++.|+.+.           .+.+||..+.+-.........+.....++++.+++..++++|.+ ..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            3567777 888888887543           57788886654444443433344445567888887777777754 7899


Q ss_pred             EEecC
Q 018806          170 IWAPS  174 (350)
Q Consensus       170 iwd~~  174 (350)
                      +||..
T Consensus       269 ~yd~~  273 (656)
T 1k3i_A          269 LYDSS  273 (656)
T ss_dssp             EEEGG
T ss_pred             EecCc
Confidence            99987

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.05  E-value=0.0007  Score=57.04  Aligned_cols=160  Identities=14%  Similarity=0.098  Sum_probs=105.4

Q ss_pred             CCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeecc--CCCCCceeeEEE
Q 018806          144 QRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSW  220 (350)
Q Consensus       144 ~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~  220 (350)
                      ..--.+++|.+...+++.+.. .++|..|+...+.. ..+...                    .+.  +.....+..+.|
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~--------------------~~s~~g~~~~~~sGl~~   70 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNVVID--------------------GASSNGDGEQQMSGLSL   70 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEECCT--------------------TTCCSSCCSEEEEEEEE
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEEecC--------------------CccccCCCcceeeEEEE
Confidence            344567899987677777664 79999999862211 111000                    001  111124578999


Q ss_pred             ---CCCCCeEEEEEe-------------CCCeEEEEeCC---CCCceeeee--------------cCCCeEEEEEcCCCC
Q 018806          221 ---GPDGRYLASASY-------------ESSSFTIWDVA---QGLGTPIRR--------------GFGGLSILKWSPTGD  267 (350)
Q Consensus       221 ---sp~g~~l~~~~~-------------d~g~i~iwd~~---~~~~~~~~~--------------~~~~v~~~~~sp~g~  267 (350)
                         .|+++.+++...             + ..+..||+.   +++......              .......++..++|+
T Consensus        71 ~~~D~~grL~vv~~~~~af~~~g~~~~g~-~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn  149 (334)
T 2p9w_A           71 LTHDNSKRLFAVMKNAKSFNFADQSSHGA-SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN  149 (334)
T ss_dssp             SSSSSCCEEEEEEEETTTTCTTSCCSSSC-CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred             eccCCCCcEEEEEcccccccccccccCCC-CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC
Confidence               688877776432             4 489999999   676554332              112477899999999


Q ss_pred             EEEEEecC-CeEEEEeCCCCceecccc------CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          268 YFFAAKFD-GTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       268 ~l~~~~~d-~~v~iwd~~~~~~~~~~~------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..++++.. +.|...+.+......+..      .....+.|+++|+|+.|++... ...++.+++.
T Consensus       150 aYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          150 SYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             EEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             EEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            98988888 888888777554433221      1223679999999999998766 6678888766

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.04  E-value=0.00018  Score=61.25  Aligned_cols=176  Identities=11%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      +.++...+++. |..++.++.+..+|..   ++...... .....+.++...+++. +.+++  +.+..+| ......  
T Consensus       139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~---g~~~~~~~-~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~--  207 (330)
T 3hxj_A          139 YATPIVSEDGT-IYVGSNDNYLYAINPD---GTEKWRFK-TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEK--  207 (330)
T ss_dssp             CSCCEECTTSC-EEEECTTSEEEEECTT---SCEEEEEE-CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEE--
T ss_pred             eeeeEEcCCCE-EEEEcCCCEEEEECCC---CCEeEEEe-cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEE--
Confidence            45556666666 4446667778787764   33333332 2334566666666643 44444  7777777 322211  


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSIL  260 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~~  260 (350)
                                            +. .... ...+.++...++|. |..++.+ |.+..+|. ++...... .....+..+
T Consensus       208 ----------------------~~-~~~~-~~~~~~~~~~~~g~-l~v~t~~-~gl~~~~~-~g~~~~~~~~~~~~~~~~  260 (330)
T 3hxj_A          208 ----------------------WN-FYAG-YWTVTRPAISEDGT-IYVTSLD-GHLYAINP-DGTEKWRFKTGKRIESSP  260 (330)
T ss_dssp             ----------------------EE-ECCS-SCCCSCCEECTTSC-EEEEETT-TEEEEECT-TSCEEEEEECSSCCCSCC
T ss_pred             ----------------------EE-EccC-CcceeceEECCCCe-EEEEcCC-CeEEEECC-CCCEeEEeeCCCCccccc
Confidence                                  11 1111 14577888888875 4455566 58888875 34433322 223334455


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      .+.+++ .|..++.++.|..+|. +++.. ........+.++...++|+..+.+.++.
T Consensus       261 ~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~  316 (330)
T 3hxj_A          261 VIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGK  316 (330)
T ss_dssp             EECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSC
T ss_pred             eEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCe
Confidence            666566 4666777888999996 55543 2323345567778888888666333443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.04  E-value=0.0045  Score=59.27  Aligned_cols=190  Identities=11%  Similarity=0.016  Sum_probs=122.7

Q ss_pred             EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccc
Q 018806          113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG  191 (350)
Q Consensus       113 ~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~  191 (350)
                      +|+. +....|+..+++.  ... ..+. .....+..++|.+..+.|+.+.. .+.|+.+++.........         
T Consensus       397 ~Ll~-an~~~Ir~i~l~~--~~~-~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~---------  462 (791)
T 3m0c_C          397 YLFF-TNRHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------  462 (791)
T ss_dssp             EEEE-ECBSSEEEECTTS--CCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------
T ss_pred             cccc-ccccceeEeeccC--Ccc-eeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce---------
Confidence            4444 3445677777753  222 2222 23456889999987667766665 478888887622110000         


Q ss_pred             eecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCCEEE
Q 018806          192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFF  270 (350)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~  270 (350)
                                  ...+... ......|++.+.++.|+.+....+.|.+.++.......+.. .......|++.|.+.+|+
T Consensus       463 ------------~~vi~~~-l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY  529 (791)
T 3m0c_C          463 ------------DTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  529 (791)
T ss_dssp             ------------EEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             ------------eEEEecC-CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEE
Confidence                        0011111 24667899998888888776665799999998766555443 345688999999876776


Q ss_pred             EEec--CCeEEEEeCCCCceecccc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          271 AAKF--DGTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       271 ~~~~--d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      ....  .+.|.+.+++......+.. .-.....|++++.+..|+.+..+...|+.+++....
T Consensus       530 wtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          530 WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            5543  3689999998766544443 335788999999999999887666788888876543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.01  E-value=0.0014  Score=58.35  Aligned_cols=196  Identities=10%  Similarity=0.099  Sum_probs=110.2

Q ss_pred             CeeEEEEecCCCEEEEEECC----Ce-EEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecC
Q 018806          101 DLQGVSWHQHKHIVAFISGS----TQ-VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d----~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~  174 (350)
                      ...+++|+++|+ |+.+...    .. +...+... .......+  ........++++|++..++.+.. ++.|+.++..
T Consensus       183 ~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~-~~~~~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          183 QCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS-GFTERLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG-TTCCEEEE--EECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CccEEEECCCCC-EEEEcCCCCcccceEEEEECCC-Ceeccccc--cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            488999999999 4444432    12 22223221 11100111  12234577889994455555554 5778888775


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC--CCc---ee
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLG---TP  249 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~--~~~---~~  249 (350)
                      .......+..                      . +. ......++|+|+|++|+.+...++.|+.++...  +..   ..
T Consensus       259 ~g~~~~~~~~----------------------~-~~-~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~  314 (433)
T 4hw6_A          259 TGTLTEEEVM----------------------M-DT-KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYI  314 (433)
T ss_dssp             TCCEEEEEEE----------------------C-SC-CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEE
T ss_pred             CCeEEEEEec----------------------c-CC-CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEE
Confidence            2221011100                      0 01 123346999999997777765546999988652  321   11


Q ss_pred             eeec---------------CCCeEEEEE---------cCCCCEEEEEecCCeEEEEeCCCCceeccccC-----------
Q 018806          250 IRRG---------------FGGLSILKW---------SPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-----------  294 (350)
Q Consensus       250 ~~~~---------------~~~v~~~~~---------sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------  294 (350)
                      +...               -.....+++         .++|.+.++-..++.|+.++. ++....+.+.           
T Consensus       315 ~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG  393 (433)
T 4hw6_A          315 VCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDG  393 (433)
T ss_dssp             EEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCE
T ss_pred             EEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCC
Confidence            1111               123567899         677776666666789999985 4554333221           


Q ss_pred             -------CCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          295 -------SGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       295 -------~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                             -.....++++|....|+++..+...|..+.+
T Consensus       394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence                   1246789999555566667655556776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.99  E-value=0.0056  Score=52.05  Aligned_cols=192  Identities=11%  Similarity=0.140  Sum_probs=113.4

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeC----CCe--EEEEec----CCcEEEEecCCCCCC
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN----GGR--SLSVGC----KGGICIWAPSYPGNA  179 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~--l~~~~~----d~~v~iwd~~~~~~~  179 (350)
                      ...+++.....+-+.+||+.   ++.+..+.   .+.++.+..-|+    |+.  +++++.    +++|.+|++.-....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~---G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD---GKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT---SCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CccEEEEEcCCCCEEEEcCC---CcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            34556666777889999994   66666653   256788877764    222  334433    378999988521111


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE--CCC-CCe-EEEEEeCCCeEEEEeCC---CC----Cce
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPD-GRY-LASASYESSSFTIWDVA---QG----LGT  248 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-g~~-l~~~~~d~g~i~iwd~~---~~----~~~  248 (350)
                        +......               ...+.. ....+..+++  +|. ++. ++....+ |.+..|++.   .+    +..
T Consensus       113 --l~~i~~~---------------~~pv~t-~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lV  173 (355)
T 3amr_A          113 --LQSMTDP---------------DHPIAT-AINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKV  173 (355)
T ss_dssp             --EEECSCT---------------TSCEEC-CCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEE
T ss_pred             --eeecccc---------------ccCcCC-CCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEE
Confidence              1111000               000000 0145677777  774 554 4444455 899999883   33    223


Q ss_pred             eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC-----Cceecccc---CCCCeEEEEE--cCCCC-EEEEEECCC
Q 018806          249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-----WTSEPWSS---TSGFVTGATW--DPEGR-MILLAFAGS  317 (350)
Q Consensus       249 ~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~-----~~~~~~~~---~~~~v~~~~~--s~~g~-~l~~~~~~~  317 (350)
                      ..+...+.+..|...+....|+.+-++.-|..|+.+.     ++......   ....+..|++  .++|+ +|++++.+.
T Consensus       174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          174 RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            3344457788999999888999999988888888652     23332222   2235788887  56777 788888555


Q ss_pred             eEEEEEEeC
Q 018806          318 LTLGSIHFA  326 (350)
Q Consensus       318 ~~~~~~~~~  326 (350)
                      .....++..
T Consensus       254 ~s~~Vydr~  262 (355)
T 3amr_A          254 SSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEESS
T ss_pred             CEEEEEECC
Confidence            555555553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.93  E-value=0.00095  Score=61.79  Aligned_cols=79  Identities=18%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCe--EEEEEcCCCCEEEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILL  312 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~s~~g~~l~~  312 (350)
                      |.|..||+.+++.............-.....+..++.++.|+.++.||.++++..-.......+  .-+.|..+|++.++
T Consensus       466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence            6899999999987654443333322222234667888999999999999999985333222222  23677788875554


Q ss_pred             E
Q 018806          313 A  313 (350)
Q Consensus       313 ~  313 (350)
                      .
T Consensus       546 ~  546 (582)
T 1flg_A          546 V  546 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.93  E-value=0.0021  Score=51.82  Aligned_cols=152  Identities=11%  Similarity=-0.025  Sum_probs=91.6

Q ss_pred             CCCeeEEEEeeCCCeEEEEecC--CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEEC
Q 018806          144 QRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  221 (350)
Q Consensus       144 ~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  221 (350)
                      ......+.|++ +..+.+.+..  ..|+++|+.+++....+..                       .    .........
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-----------------------~----~~~fgeGi~   71 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-----------------------P----PPYFGAGIV   71 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-----------------------C----TTCCEEEEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-----------------------C----CCcceeEEE
Confidence            34567899986 3444444444  5899999985543322211                       1    233333333


Q ss_pred             CCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc---cCC---
Q 018806          222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STS---  295 (350)
Q Consensus       222 p~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~---  295 (350)
                      +++..|+.....++.+.+||.++.+..........-..++  ++++.|+.+..++.|+++|.++.+.....   .+.   
T Consensus        72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~  149 (243)
T 3mbr_X           72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL  149 (243)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc
Confidence            4466676666555799999999988776555444334444  57777877777889999999998874322   221   


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       296 ~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ..+..+.|. +|+ |++..-.+..+..++...
T Consensus       150 ~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          150 DNLNELEWV-NGE-LLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             CCEEEEEEE-TTE-EEEEETTTTEEEEECTTT
T ss_pred             ccceeeEEe-CCE-EEEEECCCCeEEEEECCC
Confidence            234556665 454 555553344566665543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.93  E-value=0.00034  Score=66.07  Aligned_cols=105  Identities=13%  Similarity=0.186  Sum_probs=70.2

Q ss_pred             CCC---CeEEEEEeCCCeEEEEeCCCCCceeeeecC--C----------Ce------------------------EEEEE
Q 018806          222 PDG---RYLASASYESSSFTIWDVAQGLGTPIRRGF--G----------GL------------------------SILKW  262 (350)
Q Consensus       222 p~g---~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~--~----------~v------------------------~~~~~  262 (350)
                      .+|   +.++.++.+ |.++++|..+|+.+......  .          .+                        ..+++
T Consensus       322 ~dG~~~~~l~~~~~~-G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~  400 (677)
T 1kb0_A          322 IAGKPRKVILHAPKN-GFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF  400 (677)
T ss_dssp             ETTEEEEEEEECCTT-SEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred             cCCcEeeEEEEECCC-CEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence            467   567777777 79999999999865322210  0          00                        14688


Q ss_pred             cCCCCEEEEEecC-------------------------------------------CeEEEEeCCCCceeccccCCCCeE
Q 018806          263 SPTGDYFFAAKFD-------------------------------------------GTFYLWETNTWTSEPWSSTSGFVT  299 (350)
Q Consensus       263 sp~g~~l~~~~~d-------------------------------------------~~v~iwd~~~~~~~~~~~~~~~v~  299 (350)
                      +|++.++++...+                                           +.|..||+.+++..-...+..++.
T Consensus       401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~  480 (677)
T 1kb0_A          401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN  480 (677)
T ss_dssp             ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred             cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCc
Confidence            9988888765431                                           789999999999854444444555


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          300 GATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       300 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ...++.++..+++++ .+..++.++....
T Consensus       481 ~g~~~~~g~~v~~g~-~dg~l~a~D~~tG  508 (677)
T 1kb0_A          481 GGTLTTAGNVVFQGT-ADGRLVAYHAATG  508 (677)
T ss_dssp             CCEEEETTTEEEEEC-TTSEEEEEETTTC
T ss_pred             CcceEeCCCEEEEEC-CCCcEEEEECCCC
Confidence            556777788887764 4456777776543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.92  E-value=0.014  Score=54.38  Aligned_cols=196  Identities=7%  Similarity=-0.064  Sum_probs=128.4

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|++.+..|..+. .++.|..++++.   .....+..........+++.+.++.|+.+.. .+.|.+.++. +..
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g---~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~  113 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNG---SALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQH  113 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS---CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-STT
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCC---CCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-CCc
Confidence            578999999877777655 468888888752   2222222222245778999877777777665 4888888876 222


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC-CCeEEEEeCCCCCceeeeecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRRGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~g~i~iwd~~~~~~~~~~~~~~~v  257 (350)
                      ...+.                        ... ......+++.|....|+.+... .+.|...++.......+...-...
T Consensus       114 ~~~l~------------------------~~~-l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P  168 (628)
T 4a0p_A          114 RQVLV------------------------WKD-LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRA  168 (628)
T ss_dssp             CEEEE------------------------CSS-CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSE
T ss_pred             EEEEE------------------------eCC-CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCc
Confidence            11111                        011 2467899999966666665522 358998998876665555555678


Q ss_pred             EEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          258 SILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ..++++++++.|+.+. ..+.|..+|++......+.........+++..  ..|+.+.-....+..++...
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCC
Confidence            8999999877776664 46789999998755543333344556777764  46777765556777777543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.90  E-value=0.019  Score=55.32  Aligned_cols=192  Identities=9%  Similarity=0.017  Sum_probs=121.6

Q ss_pred             CCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-----C-CCCCeeEEEEeeCCCeEEEEecCCcEE
Q 018806           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----D-SQRDVKVLEWRPNGGRSLSVGCKGGIC  169 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-----~-~~~~v~~~~~sp~~~~l~~~~~d~~v~  169 (350)
                      .+....|.++...++|.+- .|+.++-|..|+...  ... ..+..     . ....|.++...++| .+.+++.++-+.
T Consensus       306 ~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~--~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g-~lWiGt~~~Gl~  380 (795)
T 4a2l_A          306 SLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIR--NRF-KNIRNIPYKNSLSDNVVSCIVEDKDK-NLWIGTNDGGLN  380 (795)
T ss_dssp             SCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGG--GSS-EEECCCTTSSSCSCSSEEEEEECTTS-CEEEEESSSCEE
T ss_pred             CCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCc--ccc-eEEcCCCCCCCCCCCeeEEEEECCCC-CEEEEECCCCeE
Confidence            3445679999999998854 467767788888643  221 11211     1 23468899888874 555666667788


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeecc-CCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  248 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~  248 (350)
                      .|+...... ..+....                  .... +-....|.++...++|+.|..++.+ +-|..||..+++..
T Consensus       381 ~~~~~~~~~-~~~~~~~------------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~-~Gl~~~d~~~~~~~  440 (795)
T 4a2l_A          381 LYNPITQRF-TSYTLQE------------------DESARGIGSNNIKAVYVDEKKSLVYIGTHA-GGLSILHRNSGQVE  440 (795)
T ss_dssp             EECTTTCCE-EEECCC------------------------CCSCSCEEEEEEETTTTEEEEEETT-TEEEEEETTTCCEE
T ss_pred             EEcCCCCcE-EEEecCC------------------CCcccCCCCccEEEEEEcCCCCEEEEEeCc-CceeEEeCCCCcEE
Confidence            888763221 1110000                  0000 0012578899988888746667776 47999999887655


Q ss_pred             eeee-----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc-------CCCCeEEEEEcCCCCEEEEEE
Q 018806          249 PIRR-----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       249 ~~~~-----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .+..     ....|.++...++|++.+.. . +-|.+||.++++...+..       ....|.++...++|+..+.+.
T Consensus       441 ~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  516 (795)
T 4a2l_A          441 NFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE  516 (795)
T ss_dssp             EECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred             EeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence            4432     23568899988888865544 3 458899998876644321       235789999999998776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.0013  Score=59.01  Aligned_cols=159  Identities=11%  Similarity=0.069  Sum_probs=96.9

Q ss_pred             CeeEEEEee-CCCeEEEEecC-CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE---
Q 018806          146 DVKVLEWRP-NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW---  220 (350)
Q Consensus       146 ~v~~~~~sp-~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---  220 (350)
                      ....|+|.| +...|+++... +.|++.|+... ....+...                     -.. .......++|   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~---------------------~~~-~~~~p~~ia~~~~  196 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNI---------------------NTI-PTNRIRSIAFNKK  196 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECC---------------------TTS-SCSBEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEcc---------------------Ccc-ccCCCcEEEEeec
Confidence            467899998 44556655554 66777777622 21111110                     000 1136789999   


Q ss_pred             ----CCCCCeEEEEEeCCC------eEEEEeCCC-CCce-----eeeecCCCeEEEEEcCCCCEE-EEEecCCeEEEEeC
Q 018806          221 ----GPDGRYLASASYESS------SFTIWDVAQ-GLGT-----PIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWET  283 (350)
Q Consensus       221 ----sp~g~~l~~~~~d~g------~i~iwd~~~-~~~~-----~~~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~iwd~  283 (350)
                          +++|++|+++...++      .|.+++... +...     ...........++++|++..| ++-..++.|+.+|+
T Consensus       197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence                999997777765521      366776444 2221     122222345578889965555 55556788999999


Q ss_pred             C-------CCce------------eccc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          284 N-------TWTS------------EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       284 ~-------~~~~------------~~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +       +++.            ..+.  ........++|+|+|+.|+++......|+.++...
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            7       5553            0111  22345689999999998888876667888877654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.86  E-value=0.0012  Score=62.18  Aligned_cols=80  Identities=11%  Similarity=0.069  Sum_probs=53.2

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCe--EEEEEcCCCCEEEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILL  312 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~s~~g~~l~~  312 (350)
                      |.|..||+.+++...............+...+..+++++.|+.|++||.++++..........+  .-+.+..+|++.++
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva  517 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEE
Confidence            6899999999987765544444444445557788999999999999999999984322111211  23455667775443


Q ss_pred             EE
Q 018806          313 AF  314 (350)
Q Consensus       313 ~~  314 (350)
                      .+
T Consensus       518 ~~  519 (668)
T 1kv9_A          518 IM  519 (668)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.81  E-value=0.0012  Score=61.10  Aligned_cols=80  Identities=10%  Similarity=-0.007  Sum_probs=52.6

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCC--eEEEEEcCCCCEEEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF--VTGATWDPEGRMILL  312 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~  312 (350)
                      |.|..||..+++..........+....+...+..+++++.|+.|+.||.++++..........  -.-+.+..+|+.++.
T Consensus       444 g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            689999999998766554443333333334566788889999999999999998533222121  123446678876665


Q ss_pred             EE
Q 018806          313 AF  314 (350)
Q Consensus       313 ~~  314 (350)
                      ..
T Consensus       524 ~~  525 (571)
T 2ad6_A          524 SM  525 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.80  E-value=0.0024  Score=53.79  Aligned_cols=177  Identities=10%  Similarity=0.156  Sum_probs=107.3

Q ss_pred             EecCCCEEEEEEC--CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC--------------cEEE
Q 018806          107 WHQHKHIVAFISG--STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--------------GICI  170 (350)
Q Consensus       107 ~sp~g~~la~~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------------~v~i  170 (350)
                      |+.+|.+|+....  ++.|...+.+   +.....+..   .  .+--++++|+.+.++....              .|+.
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~d---g~~~~~l~~---~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~   92 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNID---GSNIHKLSN---D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR   92 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETT---SCSCEEEEE---E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCC---CCCCEEccC---C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence            3458888888753  4555555543   444444432   1  2345689999998887642              3344


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEE---eCCCeEEEEeCCCCCc
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLG  247 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~---~d~g~i~iwd~~~~~~  247 (350)
                      .++.  +.....                        +.   ..  ....|++++++|+...   .++..|+..++.....
T Consensus        93 i~~d--g~~~~~------------------------l~---~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~  141 (302)
T 3s25_A           93 IKRN--GHGSTV------------------------LD---PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK  141 (302)
T ss_dssp             EETT--SCCCEE------------------------EE---CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC
T ss_pred             EeCC--CCcceE------------------------ee---cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe
Confidence            4443  211111                        00   01  1236788999999876   2324777778876655


Q ss_pred             eeeeecCCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          248 TPIRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      ..+..+..    ..|+++|+.|+..+. ...|++.++..+....+..  +... ..++|++++|+... .+...++...+
T Consensus       142 ~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~l  214 (302)
T 3s25_A          142 KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNI  214 (302)
T ss_dssp             EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECS
T ss_pred             EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEEC
Confidence            55554433    457889999886665 5689999998877655543  2222 34669999999886 33357778777


Q ss_pred             CCCC
Q 018806          326 ASKP  329 (350)
Q Consensus       326 ~~~~  329 (350)
                      ....
T Consensus       215 dG~~  218 (302)
T 3s25_A          215 NNPN  218 (302)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            6544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.76  E-value=0.0084  Score=51.06  Aligned_cols=182  Identities=12%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+..+.+.++++.++.+ .++.+  |.-. ..++.-..........+..+.+.+++ .+++++.++.+..-+-. .+.  
T Consensus       123 ~~~~i~~~~~~~~~~~~-~~g~v--~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~-gG~--  194 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMIT-NVGAI--YRTK-DSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEP-GQT--  194 (327)
T ss_dssp             CEEEEEEEETTEEEEEE-TTCCE--EEES-STTSSEEEEECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECT-TCS--
T ss_pred             CeEEEEEECCCCEEEEe-CCccE--EEEc-CCCCCCEEeecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCC-CCC--
Confidence            36778887777766654 45543  3322 12433333434556678999999984 56666666655443211 111  


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeeee----cCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRR----GFG  255 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~~----~~~  255 (350)
                                         .|.....  .. ...+..+++.++++.++ ++.+ |.+++.+...++. ..+..    ...
T Consensus       195 -------------------tW~~~~~--~~-~~~~~~~~~~~~g~~~~-~~~~-G~~~~s~~D~G~tW~~~~~~~~~~~~  250 (327)
T 2xbg_A          195 -------------------AWEPHNR--TT-SRRLHNMGFTPDGRLWM-IVNG-GKIAFSDPDNSENWGELLSPLRRNSV  250 (327)
T ss_dssp             -------------------SCEEEEC--CS-SSCEEEEEECTTSCEEE-EETT-TEEEEEETTEEEEECCCBCTTSSCCS
T ss_pred             -------------------ceeECCC--CC-CCccceeEECCCCCEEE-EeCC-ceEEEecCCCCCeeEeccCCcccCCc
Confidence                               2222211  11 25788899999887654 4455 6887765332321 11111    123


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccc---cCCCCeEEEEEcCCCCEEEEEECC
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS---STSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~---~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      .+..+.+.+++..++++. ++.| ++..+.++. ..+.   .....+.++.|.++++.++++.++
T Consensus       251 ~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G  313 (327)
T 2xbg_A          251 GFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKG  313 (327)
T ss_dssp             CEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTT
T ss_pred             ceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCc
Confidence            588899998887666654 6766 344555544 2222   123567889998766655554443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.75  E-value=0.0079  Score=53.45  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=89.6

Q ss_pred             CeeEEEEecC--CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCC----c-EEEEec
Q 018806          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG----G-ICIWAP  173 (350)
Q Consensus       101 ~V~~v~~sp~--g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~-v~iwd~  173 (350)
                      ....++|+|+  ...|..+...+.|+.++...  +.. ..+. ........++|+++|+ ++++...+    . +...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~--g~v-~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN--QYV-DIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTT--TEE-EEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCC--CEE-EEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence            4678999995  44455555447888888742  332 3332 3345689999999987 55554421    1 222222


Q ss_pred             CCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeeee
Q 018806          174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRR  252 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~~  252 (350)
                      . .....                       ...+. . ......++++|+...|+.+...++.|+.+|..++.. ..+..
T Consensus       215 ~-~~~~~-----------------------~~~~~-~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~  268 (433)
T 4hw6_A          215 A-SGFTE-----------------------RLSLC-N-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM  268 (433)
T ss_dssp             G-GTTCC-----------------------EEEEE-E-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE
T ss_pred             C-CCeec-----------------------ccccc-c-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec
Confidence            1 11000                       00011 1 135678999994444555544446999999987765 23322


Q ss_pred             c--CCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 018806          253 G--FGGLSILKWSPTGDYFFAA-KFDGTFYLWETN  284 (350)
Q Consensus       253 ~--~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~  284 (350)
                      .  ......++|+|+|++|+.+ ...+.|+.++++
T Consensus       269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            1  2234579999999966555 456789998865

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.73  E-value=0.013  Score=54.71  Aligned_cols=183  Identities=10%  Similarity=0.030  Sum_probs=117.4

Q ss_pred             ECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceecCC
Q 018806          118 SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRG  196 (350)
Q Consensus       118 s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  196 (350)
                      .....|+..+++.....  .......-.....++|++.++.++.+.. .+.|..+++........+              
T Consensus        15 ~~~~~I~~i~~~~~~~~--~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v--------------   78 (619)
T 3s94_A           15 ANRRDLRLVDATNGKEN--ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------------   78 (619)
T ss_dssp             ECSSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE--------------
T ss_pred             eccccEEEEeCCCCcce--EEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE--------------
Confidence            35677888888532111  1121223456889999998777777665 477888887622111111              


Q ss_pred             CCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEEEEEcCCCCEEEEEec-
Q 018806          197 PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKF-  274 (350)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~-  274 (350)
                                +... -.....+++.+.++.|+.+....+.|.+.++.......+. ..-.....+++.|.+.+|+.... 
T Consensus        79 ----------~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g  147 (619)
T 3s94_A           79 ----------VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG  147 (619)
T ss_dssp             ----------ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS
T ss_pred             ----------EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC
Confidence                      1111 1467899999987777777665579999999876555444 33456788999997666655543 


Q ss_pred             -CCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          275 -DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       275 -d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                       .+.|...+++......+. ........++++++++.|+.+......++.+++..
T Consensus       148 ~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          148 EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence             467888888765444333 23456789999999999998886667788877764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.73  E-value=0.0005  Score=65.15  Aligned_cols=197  Identities=5%  Similarity=-0.078  Sum_probs=112.8

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCC-CCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSE-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  177 (350)
                      .+.+++|++.+..|+.+. ..+.|+.++++... +.....+..........|++.+.++.|+.+.. .+.|.++++.. .
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg-~  485 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-V  485 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS-C
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC-C
Confidence            567899999877777654 45788888875310 01111111111223566788766566655544 58888888762 2


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-CeEEEEeCCCCCceeeee-cCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTPIRR-GFG  255 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-g~i~iwd~~~~~~~~~~~-~~~  255 (350)
                      ....+                        +... ......++++|.+.+|+.+.... +.|..+++.......+.. .-.
T Consensus       486 ~~~~l------------------------~~~~-~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~  540 (699)
T 1n7d_A          486 KRKTL------------------------FREQ-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  540 (699)
T ss_dssp             CEEEE------------------------CCCS-SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred             ceEEE------------------------EeCC-CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence            11111                        1111 13567889999777776654332 478888876544333322 234


Q ss_pred             CeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCceecccc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          256 GLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ....++|+|++..|+.+ ...+.|.++++.......+..   .......|++..  ..|+.+..+...|..++.
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEET
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEc
Confidence            56789999987666555 456789999997654433332   112334555543  466666544456666654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.73  E-value=0.0011  Score=56.30  Aligned_cols=174  Identities=11%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeeccccccc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  190 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (350)
                      +..|..++.++.+..+|..   ++...... .....+.++...++ ..+++++.++.+..+|.. +......        
T Consensus       107 ~~~l~v~t~~~~l~~~d~~---g~~~~~~~-~~~~~~~~~~~~~~-g~l~vgt~~~~l~~~d~~-g~~~~~~--------  172 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD---GTEKWRFK-TKKAIYATPIVSED-GTIYVGSNDNYLYAINPD-GTEKWRF--------  172 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT---SCEEEEEE-CSSCCCSCCEECTT-SCEEEECTTSEEEEECTT-SCEEEEE--------
T ss_pred             CCEEEEEecCCEEEEEcCC---CCEEEEEc-CCCceeeeeEEcCC-CEEEEEcCCCEEEEECCC-CCEeEEE--------
Confidence            4456677788888888874   33333332 23445666777666 456666667889999876 3221111        


Q ss_pred             ceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCCEE
Q 018806          191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF  269 (350)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l  269 (350)
                                       ... ...+.++...+++..++..  .  .|..+| .+++...... ....+.++...++|. |
T Consensus       173 -----------------~~~-~~~~~~~~~d~~g~l~v~t--~--~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l  228 (330)
T 3hxj_A          173 -----------------KTN-DAITSAASIGKDGTIYFGS--D--KVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-I  228 (330)
T ss_dssp             -----------------ECS-SCCCSCCEECTTCCEEEES--S--SEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-E
T ss_pred             -----------------ecC-CCceeeeEEcCCCEEEEEe--C--EEEEEC-CCCcEEEEEccCCcceeceEECCCCe-E
Confidence                             111 1356777787787755544  3  789999 6665443332 335577888888875 5


Q ss_pred             EEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          270 FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       270 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      ..++.++.|..+|...............+..+.+.++|...+ ++.+ ..++.++
T Consensus       229 ~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~-ggl~~~d  281 (330)
T 3hxj_A          229 YVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYD-GHLYAIN  281 (330)
T ss_dssp             EEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEE-ECTT-CEEEEEC
T ss_pred             EEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEE-ecCC-CCEEEEC
Confidence            556667888888753333333333333345566676776544 4432 2344444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.73  E-value=0.00034  Score=66.32  Aligned_cols=180  Identities=11%  Similarity=0.011  Sum_probs=109.6

Q ss_pred             CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC---CCCceeecccccccceec
Q 018806          119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAASFLGALS  194 (350)
Q Consensus       119 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~  194 (350)
                      ..+.|+..+++.  .. ...+ ......+..++|.+.++.|+.+.. .+.|+.+++...   .....+            
T Consensus       384 ~~~~I~~id~~~--~~-~~~~-~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~------------  447 (699)
T 1n7d_A          384 NRHEVRKMTLDR--SE-YTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------  447 (699)
T ss_dssp             CTTC-CEECTTS--CC-EECC-SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB------------
T ss_pred             CccceEEEeCCC--Cc-ceee-eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE------------
Confidence            445677777643  22 2222 123346778999987677776655 488888887631   110000            


Q ss_pred             CCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-CCCeEEEEEcCCCCEEEEEe
Q 018806          195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~  273 (350)
                                  +... ......+++.+.+..|+.+....+.|.++++.......+... ......++++|.+.+|+.+.
T Consensus       448 ------------i~~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          448 ------------ISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             ------------CCSC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred             ------------EeCC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence                        1100 124567888876666666544436899999886654444332 34567889999766665544


Q ss_pred             c--CCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          274 F--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       274 ~--d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .  .+.|+++++.......+. ........|+|+|++..|+++......|..+++..
T Consensus       515 ~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          515 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             cCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            3  268888887654433332 22345678999999988988886666788877754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.73  E-value=0.015  Score=48.94  Aligned_cols=196  Identities=9%  Similarity=0.017  Sum_probs=113.5

Q ss_pred             eeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCC-----C--CCeeEEEE---eeCCCeEEEEec------
Q 018806          102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDS-----Q--RDVKVLEW---RPNGGRSLSVGC------  164 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~-----~--~~v~~~~~---sp~~~~l~~~~~------  164 (350)
                      -.++.|++....+..++ ..++|..|+...  +...... ...     .  ..+..+.|   .|+ ++|+++..      
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~--~~~~~~~-~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~   90 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKT--QSHFNVV-IDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFN   90 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTT--CCEEEEC-CTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCC--CeEEEEe-cCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccc
Confidence            35788998666666666 689999999852  2222222 221     1  13579999   688 45554333      


Q ss_pred             --------CCcEEEEecC---CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC
Q 018806          165 --------KGGICIWAPS---YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE  233 (350)
Q Consensus       165 --------d~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  233 (350)
                              +..+..+|+.   +++....+.-.....             -.+...+........++..++|+..++.+..
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~-------------~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~  157 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD-------------EFEKKAGKRPFGVVQSAQDRDGNSYVAFALG  157 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH-------------HHHHHHSSCCEEEEEEEECTTSCEEEEEEES
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccc-------------cccccccccccCCceeEECCCCCEEEeCCCC
Confidence                    4668888887   333322211000000             0000001111357899999999988887776


Q ss_pred             -CCeEEEEeCCCCCceeeeec------CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccc--c---CCCCeE
Q 018806          234 -SSSFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS--S---TSGFVT  299 (350)
Q Consensus       234 -~g~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~--~---~~~~v~  299 (350)
                       . .|...+............      ......++++|+|+.|++....+.|..+|++....  ....  +   ......
T Consensus       158 ~~-~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d  236 (334)
T 2p9w_A          158 MP-AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTE  236 (334)
T ss_dssp             SC-EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred             CC-eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence             5 777777765433322211      12467899999999998887799999999885333  2222  1   112234


Q ss_pred             EE-EEcCCCCEEEEEEC
Q 018806          300 GA-TWDPEGRMILLAFA  315 (350)
Q Consensus       300 ~~-~~s~~g~~l~~~~~  315 (350)
                      .+ .--.+|+.|+++..
T Consensus       237 gilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          237 KIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             EEEEEEETTEEEEEEEE
T ss_pred             cccccccCCEEEEEEcC
Confidence            43 33457888666653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.69  E-value=0.0071  Score=52.14  Aligned_cols=59  Identities=15%  Similarity=0.062  Sum_probs=38.6

Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc-------eeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-------SEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .....++| .+|..+++.-..+.|...+++...       ...+......+..+++.|||.+.++..
T Consensus       268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            34567777 467666665566778888776443       122323346789999999997766554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.0031  Score=56.62  Aligned_cols=161  Identities=12%  Similarity=0.093  Sum_probs=92.7

Q ss_pred             CeeEEEEec-CCCEEEEEEC-CCeEEEEEccCCCCCceeEecCC--CCCCeeEEEE-------eeCCCeEEEEecCC-c-
Q 018806          101 DLQGVSWHQ-HKHIVAFISG-STQVIVRDYEDSEGKDACILTSD--SQRDVKVLEW-------RPNGGRSLSVGCKG-G-  167 (350)
Q Consensus       101 ~V~~v~~sp-~g~~la~~s~-d~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~-------sp~~~~l~~~~~d~-~-  167 (350)
                      ....|+|+| +...|..+.. .+.|++.|+.  ++........+  .-.....++|       +++|..++++...+ . 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~--~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK--NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETT--TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECC--CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            467899999 3554555443 3556666764  23322222211  1235789999       99988677766543 2 


Q ss_pred             -----EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC
Q 018806          168 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       168 -----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~  242 (350)
                           |.+.+....+....  ..              ....+..+     .....++++|++..|+.+...+|.|..+|+
T Consensus       218 ~~~~~V~~i~r~~~G~~~~--~~--------------~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDD--RS--------------DIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             GGEEEEEEEECCTTSCCST--TS--------------CEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             ccCceEEEEecCCCCceee--cc--------------cceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence                 44554221111100  00              00011111     245678999977777777666579999998


Q ss_pred             C-------CCCc------------eeeee--cCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 018806          243 A-------QGLG------------TPIRR--GFGGLSILKWSPTGDYFFAA-KFDGTFYLWETN  284 (350)
Q Consensus       243 ~-------~~~~------------~~~~~--~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~  284 (350)
                      .       ++..            ..+..  .......++|+|+|++|+.+ ...+.|+.++..
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            7       5543            12221  23456799999999976555 456788886653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.65  E-value=0.049  Score=52.45  Aligned_cols=189  Identities=12%  Similarity=0.128  Sum_probs=120.5

Q ss_pred             CCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC-------CCCCeeEEEEeeCCCeEEEEecCCcEE
Q 018806           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-------SQRDVKVLEWRPNGGRSLSVGCKGGIC  169 (350)
Q Consensus        97 ~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~d~~v~  169 (350)
                      +....|.++...++|.+.+ |+.+| +.+|+...  +. ...+...       ....|.++...++| .+..++.++.|.
T Consensus       260 l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~--~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWigt~~~Gl~  333 (795)
T 4a2l_A          260 ISSNYIRSLAMDSQNRLWI-GTFND-LNIYHEGT--DS-FASYSSNPVENGSLSQRSVRSIFMDSQG-GMWLGTYFGGLN  333 (795)
T ss_dssp             CSCSBEEEEEECTTSCEEE-EESSC-EEEEETTT--TE-EEEECCCTTSTTSCSSSCEEEEEECTTS-CEEEEESSSCEE
T ss_pred             cCCCeEEEEEEcCCCCEEE-EeCCh-hheEcCCC--Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCc-CEEEEECCCCeE
Confidence            3456799999999988554 45554 78888642  22 2222111       23569999988885 555666667788


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      .|+...... ..+....                   .-.+-....|.++...++|...+ ++.+ |-|..||..++....
T Consensus       334 ~~~~~~~~~-~~~~~~~-------------------~~~~l~~~~V~~i~~d~~g~lWi-Gt~~-~Gl~~~~~~~~~~~~  391 (795)
T 4a2l_A          334 YYHPIRNRF-KNIRNIP-------------------YKNSLSDNVVSCIVEDKDKNLWI-GTND-GGLNLYNPITQRFTS  391 (795)
T ss_dssp             EECGGGGSS-EEECCCT-------------------TSSSCSCSSEEEEEECTTSCEEE-EESS-SCEEEECTTTCCEEE
T ss_pred             EeCCCcccc-eEEcCCC-------------------CCCCCCCCeeEEEEECCCCCEEE-EECC-CCeEEEcCCCCcEEE
Confidence            888652211 1110000                   00010124689999988886554 5555 469999988776544


Q ss_pred             eee---------cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc-----CCCCeEEEEEcCCCCEEEEE
Q 018806          250 IRR---------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-----TSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       250 ~~~---------~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~  313 (350)
                      ...         ....|.+++..++|+.|..|+.++-|..||.++++...+..     ....|.++...++|++.+.+
T Consensus       392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            321         13568899988899856667777789999999887654432     24578999999999876644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.62  E-value=0.0034  Score=59.08  Aligned_cols=210  Identities=13%  Similarity=0.015  Sum_probs=110.4

Q ss_pred             eEEEEecCCCEEEEEEC-CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-C-----CcEEEEecCC
Q 018806          103 QGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K-----GGICIWAPSY  175 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d-----~~v~iwd~~~  175 (350)
                      .++++.++++++++|+. +..+.+||....+-......  .....-.+++..++|+.++.+|. +     ..+.+||...
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCC--CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            34677889999999874 56899999864322211111  11222234556668777777773 3     5688999874


Q ss_pred             CCCCcee--------eccccc----ccce--ecCCCC---------CceEEeee--------ccCCC--------CCcee
Q 018806          176 PGNAASV--------RSGAAS----FLGA--LSRGPG---------TRWTLVDF--------LRSQN--------GEQIT  216 (350)
Q Consensus       176 ~~~~~~~--------~~~~~~----~~~~--~~~~~~---------~~~~~~~~--------~~~~~--------~~~v~  216 (350)
                      .. -..+        ......    ....  +..+.+         ..+..++.        ...+.        ...-.
T Consensus       324 ~~-W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          324 KT-WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TE-EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             Cc-ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            32 1111        000000    0000  000000         11111110        00000        01123


Q ss_pred             eEEEC-CCCCeEEEEEeCC-------C---eEEEEeCCCCCceeee--e-cCC-CeEEEEEcCCCCEEEEEecC------
Q 018806          217 ALSWG-PDGRYLASASYES-------S---SFTIWDVAQGLGTPIR--R-GFG-GLSILKWSPTGDYFFAAKFD------  275 (350)
Q Consensus       217 ~~~~s-p~g~~l~~~~~d~-------g---~i~iwd~~~~~~~~~~--~-~~~-~v~~~~~sp~g~~l~~~~~d------  275 (350)
                      ++.|. .+++.+++++.+.       .   .|.+||..+.....+.  . ... .-.+++..|+|+.++.|+.+      
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence            34443 3677777777431       1   5778888776654443  1 112 23355677899999988754      


Q ss_pred             -----CeEEEEeCCCCceeccc---cCCCCeEEEEEcCCCCEEEEEEC
Q 018806          276 -----GTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       276 -----~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                           ..+.+||..+.+-..+.   ..........+.|+|+.+++|+.
T Consensus       483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                 46899999877653322   11222344567799999998873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.60  E-value=0.0015  Score=56.72  Aligned_cols=142  Identities=8%  Similarity=-0.048  Sum_probs=83.9

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCCCCCC---------e-eEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRD---------V-KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~---------v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ..++.+..++.+..+|..+  ++..-.........         + .....  .+..+++++.++.+..+|...++..  
T Consensus       189 ~~v~~g~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~--  262 (376)
T 3q7m_A          189 GAAVVGGDNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIM--  262 (376)
T ss_dssp             TEEEECCTTTEEEEEETTT--CCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEE--
T ss_pred             CEEEEEcCCCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEE--
Confidence            4566677788888888753  54433332111000         1 11111  2366777777888999988744321  


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-c-CCCeEE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-G-FGGLSI  259 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~-~~~v~~  259 (350)
                                            +..-   . .....+..  ++..++.++.+ |.+..+|..+++...... . ...+..
T Consensus       263 ----------------------w~~~---~-~~~~~~~~--~~~~l~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~  313 (376)
T 3q7m_A          263 ----------------------WKRE---L-GSVNDFIV--DGNRIYLVDQN-DRVMALTIDGGVTLWTQSDLLHRLLTS  313 (376)
T ss_dssp             ----------------------EEEC---C-CCEEEEEE--ETTEEEEEETT-CCEEEEETTTCCEEEEECTTTTSCCCC
T ss_pred             ----------------------eecc---C-CCCCCceE--ECCEEEEEcCC-CeEEEEECCCCcEEEeecccCCCcccC
Confidence                                  1110   0 12233333  35677777777 699999999998765443 1 122222


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceec
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  290 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~  290 (350)
                      ...  .+..|++++.+|.|+++|.++++...
T Consensus       314 ~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          314 PVL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             CEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            332  35678888889999999999998743

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.59  E-value=0.0056  Score=53.12  Aligned_cols=146  Identities=10%  Similarity=-0.081  Sum_probs=85.9

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCCC--------CCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS--------QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ++..|++++.++.+..+|..+  ++..-......        ...+... ...++..+++++.++.+..+|...++....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADD--GKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTT--CCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccC--CceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence            356677778888898998854  55433332211        1223222 223447788888889999999875443211


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCe----
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL----  257 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v----  257 (350)
                      ...                       ..   .........  +..++.++.+ |.|..+|..+++..........+    
T Consensus       129 ~~~-----------------------~~---~~~~~p~~~--~~~v~v~~~~-g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          129 TKV-----------------------AG---EALSRPVVS--DGLVLIHTSN-GQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             EEC-----------------------SS---CCCSCCEEE--TTEEEEECTT-SEEEEEETTTCCEEEEEECCC-----C
T ss_pred             EeC-----------------------CC---ceEcCCEEE--CCEEEEEcCC-CeEEEEECCCCcEEEEEeCCCCceeec
Confidence            111                       10   011111221  3467777777 69999999999876554433222    


Q ss_pred             --EEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          258 --SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       258 --~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                        ......  +..++++..++.|..+|.++++..
T Consensus       180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~  211 (376)
T 3q7m_A          180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMI  211 (376)
T ss_dssp             CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEE
T ss_pred             CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEE
Confidence              122222  346777888999999999998874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.59  E-value=0.0041  Score=58.86  Aligned_cols=171  Identities=13%  Similarity=0.052  Sum_probs=95.1

Q ss_pred             CCCEEEEEECCCeEEEEEccCCCCCceeEecCC-CC---CCeeE-EEEeeCCCeEEEEec------CCcEEEEecCCCCC
Q 018806          110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQ---RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGN  178 (350)
Q Consensus       110 ~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~-~~---~~v~~-~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~  178 (350)
                      ++..|++++.|+.+..+|..+  ++..-..... +.   ..+.+ ... .+ ..++++..      ++.|+.||..+++.
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~T--G~~~W~~~~~~~~~~~~~~~~sP~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKT--GQRAWSVDTRADHKRSYTITGAPRV-VN-GKVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTT--CCEEEEEECCSCTTSCCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             ECCEEEEEccCCEEEEEECCC--CCEeeeecCcCCCCCCccccCCcEE-EC-CEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            356788888899999999854  6554433222 11   11111 111 24 45555432      58899999986665


Q ss_pred             Cceeecccccccceec---------CCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--------------
Q 018806          179 AASVRSGAASFLGALS---------RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--------------  235 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--------------  235 (350)
                      .-.+......+...+.         .-....|.   ...+. ......++++|++..++.++.+ |              
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~---~~~~g-~~~w~~~~~d~~~~~vy~~~~~-g~~w~~~~~~~~~gd  270 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV---EQGGG-GTAWDSFAYDPELNLLYIGVGN-GSLWDPKWRSQAKGD  270 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH---HHCEE-CCCCSCEEEETTTTEEEEECCC-EESSCHHHHHTTCSC
T ss_pred             EEEecccCCCcccccccccccccccccCCceee---ecCCC-CccccceeEcCCCCEEEEeCCC-CCccccCCCCCCCCC
Confidence            4433321100000000         00000000   00011 1223467888988888887766 4              


Q ss_pred             -----eEEEEeCCCCCceeeee---cC-------CCeEEEEEcCCCC---EEEEEecCCeEEEEeCCCCcee
Q 018806          236 -----SFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       236 -----~i~iwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g~---~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                           .|..+|.++|+......   +.       ..+.......+|+   .++.++.+|.++++|.++|+..
T Consensus       271 ~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          271 NLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             ceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence                 39999999998775433   21       1122222333665   6888899999999999999874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.56  E-value=0.0074  Score=49.20  Aligned_cols=117  Identities=10%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee--ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       206 ~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                      .+.+-. ..+..++|+|++..|++.....+.|...|.. ++.....  ........+++.+++.++++.-.++.+.++++
T Consensus        21 ~l~g~~-~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGIT-NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCC-SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcc-cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            455554 5799999999888777766555799999998 6544433  23356888999999987676656788999987


Q ss_pred             CCCce------ecc----ccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEEE
Q 018806          284 NTWTS------EPW----SSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIH  324 (350)
Q Consensus       284 ~~~~~------~~~----~~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~~~~  324 (350)
                      .....      ..+    .........++|+|+++.|+++.... ..++.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            65442      111    12234568999999998888887443 5788887

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.56  E-value=0.032  Score=48.02  Aligned_cols=59  Identities=10%  Similarity=0.029  Sum_probs=39.8

Q ss_pred             CCeEEEEEc-------CCCCEEEEEecCCeEEEEeCCCC-ce---eccc-cCCCCeEEEEEcCCCCEEEEE
Q 018806          255 GGLSILKWS-------PTGDYFFAAKFDGTFYLWETNTW-TS---EPWS-STSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       255 ~~v~~~~~s-------p~g~~l~~~~~d~~v~iwd~~~~-~~---~~~~-~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      .....++|.       .+|.++++.-..+.|...+++.. +.   ..+. .....+..+++.|||.+.++.
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            456778883       56776666666778888888753 22   2222 224578999999999766554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.49  E-value=0.0096  Score=55.16  Aligned_cols=78  Identities=12%  Similarity=0.012  Sum_probs=49.8

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc--CCCCeEEEEEcCCCCEEEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~  312 (350)
                      |.|..||+.+++.........+...-.+...+..++.++.|+.|+.||.++|+..-...  ......-+.|..+|++.++
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~  532 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEE
Confidence            68999999999876554433222221223356678889999999999999999843221  1112233567778875443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.06  Score=51.71  Aligned_cols=187  Identities=11%  Similarity=0.054  Sum_probs=115.9

Q ss_pred             CCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec--------C-CCCCCeeEEEEeeCCCeEEEEecCC
Q 018806           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--------S-DSQRDVKVLEWRPNGGRSLSVGCKG  166 (350)
Q Consensus        96 ~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~--------~-~~~~~v~~~~~sp~~~~l~~~~~d~  166 (350)
                      .+....|.++...++|.+- .|+.++-|..++...  ... ..+.        . -....|.++...++| .+.+++.++
T Consensus       309 ~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt~~~  383 (781)
T 3v9f_A          309 SLSNASARYIFQDSFNNIW-IGTWGGGINFISNAP--PTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGTDGG  383 (781)
T ss_dssp             SBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSC--CSC-EEEC----CCCSSCCSSSCEEEEEECTTS-CEEEEEBSS
T ss_pred             CCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCC--Ccc-eeeccCccccccCCCCCcceEEEEEcCCC-CEEEEeCCC
Confidence            3445679999999988744 466666688888643  221 1111        0 123568888887774 555556566


Q ss_pred             cEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC
Q 018806          167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL  246 (350)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~  246 (350)
                      .+..|+...... ..+..                      -.......|.++...++|...+ ++.+ +-+..+|..+++
T Consensus       384 Gl~~~~~~~~~~-~~~~~----------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~-~Gl~~~~~~~~~  438 (781)
T 3v9f_A          384 GINVFENGKRVA-IYNKE----------------------NRELLSNSVLCSLKDSEGNLWF-GTYL-GNISYYNTRLKK  438 (781)
T ss_dssp             CEEEEETTEEEE-ECC---------------------------CCCSBEEEEEECTTSCEEE-EETT-EEEEEECSSSCE
T ss_pred             cEEEEECCCCeE-EEccC----------------------CCCCCCcceEEEEECCCCCEEE-Eecc-CCEEEEcCCCCc
Confidence            688888652110 00000                      0001125788998888876554 5555 478899988775


Q ss_pred             ceeeee---cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC------CCCeEEEEEcCCCCEEEEEE
Q 018806          247 GTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST------SGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       247 ~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ...+..   ....|.++...++|.+.+ |+. +-|..||..+++...+...      ...|.++...++|++.+.+.
T Consensus       439 ~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  513 (781)
T 3v9f_A          439 FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF  513 (781)
T ss_dssp             EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred             EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence            544332   235688898888887554 444 5699999888765433211      35789999999998776443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.38  E-value=0.042  Score=47.92  Aligned_cols=109  Identities=10%  Similarity=0.103  Sum_probs=76.4

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-----------e--eeee------cCCCeEEEEEcCC---CCEEEE
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----------T--PIRR------GFGGLSILKWSPT---GDYFFA  271 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-----------~--~~~~------~~~~v~~~~~sp~---g~~l~~  271 (350)
                      .+..+..+|+|++||..+..  +|.|..+..+..           .  ...-      ...+|..+.|+|-   +..|++
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            67889999999999998765  899998874321           0  1111      1356999999995   567999


Q ss_pred             EecCCeEEEEeCCCCceec--c---------ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          272 AKFDGTFYLWETNTWTSEP--W---------SSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       272 ~~~d~~v~iwd~~~~~~~~--~---------~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      -..|+.|++||+......+  +         ......|.+++|..+|-.|++.. ...+.+|.+.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            9999999999998632211  1         11235788999999887777754 3334566553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.31  E-value=0.062  Score=45.60  Aligned_cols=183  Identities=14%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC---CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ..+.+|.|.+++..+++ +..+.| +...+  .++.-.....   .....+.++.|.+  +.+++++..+.|..  ....
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~D--gG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~--S~Dg  107 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATL-METRD--GGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH--TTDG  107 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEE-EEESS--TTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE--ESST
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeE-EEeCC--CCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE--ECCC
Confidence            36889999887777774 566754 22222  2322222211   1244688999975  45666666675443  2222


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc-eeee-ecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR-RGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~-~~~~-~~~  254 (350)
                      +.                     .|......... .+.+..+.+.++++.++.+ .+ |.|.. ..+.++. ..+. ...
T Consensus       108 G~---------------------tW~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~-g~v~~-S~DgG~tW~~~~~~~~  162 (327)
T 2xbg_A          108 GQ---------------------SWSQIPLDPKL-PGSPRLIKALGNGSAEMIT-NV-GAIYR-TKDSGKNWQALVQEAI  162 (327)
T ss_dssp             TS---------------------SCEECCCCTTC-SSCEEEEEEEETTEEEEEE-TT-CCEEE-ESSTTSSEEEEECSCC
T ss_pred             CC---------------------CceECccccCC-CCCeEEEEEECCCCEEEEe-CC-ccEEE-EcCCCCCCEEeecCCC
Confidence            22                     12211111111 1346677777766655544 44 44432 2223322 2222 234


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeC--CCCceeccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      ..+..+.+.+++++++++...+.++-.|-  .+.+... ......+..++++++++.++++.++
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTT
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCc
Confidence            56889999999988876654443333442  2222221 2334578899999999877665443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.30  E-value=0.068  Score=45.94  Aligned_cols=69  Identities=14%  Similarity=0.097  Sum_probs=45.5

Q ss_pred             CeEEEEEcC-------CCCEEEEEecCCeEEEEeCCCCcee---ccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          256 GLSILKWSP-------TGDYFFAAKFDGTFYLWETNTWTSE---PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       256 ~v~~~~~sp-------~g~~l~~~~~d~~v~iwd~~~~~~~---~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      ....+.|..       +|+++++.-..+.|...+++.++..   .+. .....+..+++.|||.+.++.......|+.+.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~  351 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVS  351 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEEe
Confidence            466677753       4666666666778888888765431   222 23457899999999996654444556777664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.29  E-value=0.067  Score=51.37  Aligned_cols=183  Identities=9%  Similarity=0.033  Sum_probs=113.0

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec---CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      ....|.++...++|++. .|+.++-+..|+...  +.. ..+.   ......|.++...++| .+.++..++.+..++..
T Consensus       361 ~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~--~~~-~~~~~~~~~~~~~v~~i~~d~~g-~lWigt~~~Gl~~~~~~  435 (781)
T 3v9f_A          361 SNKVVSSVCDDGQGKLW-IGTDGGGINVFENGK--RVA-IYNKENRELLSNSVLCSLKDSEG-NLWFGTYLGNISYYNTR  435 (781)
T ss_dssp             SSSCEEEEEECTTSCEE-EEEBSSCEEEEETTE--EEE-ECC-----CCCSBEEEEEECTTS-CEEEEETTEEEEEECSS
T ss_pred             CCcceEEEEEcCCCCEE-EEeCCCcEEEEECCC--CeE-EEccCCCCCCCcceEEEEECCCC-CEEEEeccCCEEEEcCC
Confidence            34579999998888754 456556688888642  211 1111   1134568888887774 55556666678888765


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-  253 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-  253 (350)
                      ... ...+.                       ........|.++...++|+..+. +..  -+..||..+++....... 
T Consensus       436 ~~~-~~~~~-----------------------~~~~~~~~v~~i~~d~~g~lwig-t~~--Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          436 LKK-FQIIE-----------------------LEKNELLDVRVFYEDKNKKIWIG-THA--GVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             SCE-EEECC-----------------------STTTCCCCEEEEEECTTSEEEEE-ETT--EEEEEESSSSSCCEEECTT
T ss_pred             CCc-EEEec-----------------------cCCCCCCeEEEEEECCCCCEEEE-ECC--ceEEEeCCCCeEEecccCc
Confidence            221 10000                       00111257889988888875554 443  688999887765444321 


Q ss_pred             -----CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc----CCCCeEEEEEcCCCCEEEEE
Q 018806          254 -----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       254 -----~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~  313 (350)
                           ...+.++...++|++.+. +.++-|..||.++++...+..    ....|.++...++|+..+.+
T Consensus       489 ~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             TSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             ccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence                 256889999999876554 443448889988776544321    23568899999999876644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.28  E-value=0.021  Score=50.98  Aligned_cols=60  Identities=13%  Similarity=0.230  Sum_probs=36.3

Q ss_pred             CeeEEEEecCCCEEEEEECC-CeEEEEEccCCCCCcee--EecC-----CCCCCeeEEEEeeC---CCeEEEEe
Q 018806          101 DLQGVSWHQHKHIVAFISGS-TQVIVRDYEDSEGKDAC--ILTS-----DSQRDVKVLEWRPN---GGRSLSVG  163 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d-~~i~iw~~~~~~~~~~~--~~~~-----~~~~~v~~~~~sp~---~~~l~~~~  163 (350)
                      ..++|+|.|+|+++++ ... +.|++++...  +....  .+..     .....+..|+|+|+   ++.|+++.
T Consensus        28 ~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~--g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           28 KPHALLWGPDNQIWLT-ERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             SEEEEEECTTSCEEEE-ETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CceEEEEcCCCcEEEE-EcCCCEEEEEECCC--CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            3679999999997776 454 4677776532  33211  1111     12456789999995   45555443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.27  E-value=0.075  Score=45.67  Aligned_cols=150  Identities=11%  Similarity=0.086  Sum_probs=80.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe--cCCCCCCeeEEEEeeC---CCeEEEEec-C-----CcEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDSQRDVKVLEWRPN---GGRSLSVGC-K-----GGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~---~~~l~~~~~-d-----~~v~  169 (350)
                      ....++|.|+|++++ +..++.|.+++ + .+......+  ..........++|+|+   ++.++++.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            367899999999555 46779888887 2 211111111  1122456899999998   555555444 2     5566


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeecc--CCCCCceeeEEECCCCCeEEEEEeC------------CC
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSWGPDGRYLASASYE------------SS  235 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~d------------~g  235 (350)
                      .++... .....                  .-.+...+.  .........++|.|||..+++.+..            .|
T Consensus       109 r~~~~~-~~~~~------------------~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g  169 (352)
T 2ism_A          109 RLRHLG-ERGVL------------------DRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG  169 (352)
T ss_dssp             EEEECS-SCEEE------------------EEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred             EEEeCC-CCcCc------------------eEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence            666652 11100                  000111122  1001134689999999655554321            14


Q ss_pred             eEEEEeCCCC-------------CceeeeecCCCeEEEEEcC-CCCEEEEE
Q 018806          236 SFTIWDVAQG-------------LGTPIRRGFGGLSILKWSP-TGDYFFAA  272 (350)
Q Consensus       236 ~i~iwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~g~~l~~~  272 (350)
                      .|..++....             ..............++|+| +|+++++-
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             EEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE
T ss_pred             EEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE
Confidence            6777776531             1112222334567899999 66655443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.26  E-value=0.042  Score=47.16  Aligned_cols=111  Identities=10%  Similarity=0.092  Sum_probs=68.6

Q ss_pred             ceeeEEECC--CCC-eEEEEEeC--CCeEEEEeCCCCCc--eeeee--c--CCCeEEEEEcCCCCEEEEEec--------
Q 018806          214 QITALSWGP--DGR-YLASASYE--SSSFTIWDVAQGLG--TPIRR--G--FGGLSILKWSPTGDYFFAAKF--------  274 (350)
Q Consensus       214 ~v~~~~~sp--~g~-~l~~~~~d--~g~i~iwd~~~~~~--~~~~~--~--~~~v~~~~~sp~g~~l~~~~~--------  274 (350)
                      ....+.+.+  +|+ +|+.+...  +.+|.+|++.....  ..+..  +  -.....+.+.++|++.++...        
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            456666655  454 34444332  24788887765422  22211  2  245788999999987776541        


Q ss_pred             ---------CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          275 ---------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       275 ---------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                               .|.|+-+|.  ++...+...-...+.++|||||+.|+++......++.+++.
T Consensus       193 ~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             HHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence                     245555554  44443333345678999999999999998666677777765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.19  E-value=0.022  Score=48.69  Aligned_cols=155  Identities=9%  Similarity=0.059  Sum_probs=81.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeE--e---cCCCCCCeeEEEEeeC---CCeEEEE-e--cCCcEE
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI--L---TSDSQRDVKVLEWRPN---GGRSLSV-G--CKGGIC  169 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~--~---~~~~~~~v~~~~~sp~---~~~l~~~-~--~d~~v~  169 (350)
                      ..+.|+|.|||+++++--..|.|++++.+.  +.....  +   ..........|+++|+   +..+++. +  .++.|.
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            368999999999777644488888887532  332111  1   1123456899999995   3444332 2  234454


Q ss_pred             EEecCCCCCC-ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe------------CCCe
Q 018806          170 IWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------------ESSS  236 (350)
Q Consensus       170 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~------------d~g~  236 (350)
                      -|.+...... ..+..               .-.++..+..........|+|.|||.++++.+.            ..|.
T Consensus       111 R~~~~~~~~~~~~~~~---------------~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~  175 (347)
T 3das_A          111 RMLYDEKKPSGEQLGA---------------PDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK  175 (347)
T ss_dssp             EEEBCTTSCTTCCBCC---------------CEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred             EEEeCCCCcccccCCC---------------cEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE
Confidence            4554421100 00000               001111121111113467999999977666542            1246


Q ss_pred             EEEEeCCCC--------CceeeeecCCCeEEEEEcCCCCEEEEE
Q 018806          237 FTIWDVAQG--------LGTPIRRGFGGLSILKWSPTGDYFFAA  272 (350)
Q Consensus       237 i~iwd~~~~--------~~~~~~~~~~~v~~~~~sp~g~~l~~~  272 (350)
                      |.-.+....        ..............++|+|+|++.++-
T Consensus       176 IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          176 ILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             EEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred             EEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence            666665532        111122233557789999998765543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.17  E-value=0.15  Score=47.37  Aligned_cols=189  Identities=10%  Similarity=0.032  Sum_probs=120.1

Q ss_pred             EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccc
Q 018806          113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG  191 (350)
Q Consensus       113 ~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~  191 (350)
                      +|+.+ ..+.|+..+++...... ..+....-..+.+++|.+.++.++.+.. .+.|+.+++... ....+.        
T Consensus       319 ~Ll~~-~~~~i~~i~l~~~~~~~-~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~-~~~~v~--------  387 (619)
T 3s94_A          319 LLLLA-RRTDLRRISLDTPDFTD-IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS-GSQFVV--------  387 (619)
T ss_dssp             EEEEE-ESSCEEEEESSSTTCCC-EECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--------
T ss_pred             EEEEE-cccceEEEecCCCccce-eEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC-ccEEEE--------
Confidence            45544 34567777776432222 1221122345788999987677776665 488888887622 211111        


Q ss_pred             eecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCCEEE
Q 018806          192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFF  270 (350)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~  270 (350)
                                      ... -.....+++.+.++.|+.+....+.|.+.++.......+.. .-.....+++.|....|+
T Consensus       388 ----------------~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly  450 (619)
T 3s94_A          388 ----------------TAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY  450 (619)
T ss_dssp             ----------------CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred             ----------------ECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence                            111 14567899988777777766555799999998765544443 346788999999755555


Q ss_pred             EEec--CCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          271 AAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       271 ~~~~--d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      ....  ...|...+++......+. ..-.....+++++++..|+.+..+...+..+++....
T Consensus       451 ~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~  512 (619)
T 3s94_A          451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG  512 (619)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             EecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence            4432  367877787654443333 2345678999999999999988766788888876543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.82  E-value=0.05  Score=46.77  Aligned_cols=148  Identities=16%  Similarity=0.119  Sum_probs=78.4

Q ss_pred             CeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--
Q 018806          146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--  223 (350)
Q Consensus       146 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--  223 (350)
                      ....|+|.|+|+.++++...+.|++++.. ......+...                   ..+..........++|+|+  
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-------------------~~v~~~g~~g~~gia~~pdf~   78 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-------------------PDVWAHGQGGLLDVVLAPDFA   78 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-------------------CCCCCSTTCSEEEEEECTTHH
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-------------------cccccCCCCCceeEEECCCCC
Confidence            46889999997646666677988888743 1111111000                   0000111246689999996  


Q ss_pred             -CCeEEEEE-e-------CCCeEEEEeCCCCC-----ceeeeec-------CCCeEEEEEcCCCCEEEEEec--------
Q 018806          224 -GRYLASAS-Y-------ESSSFTIWDVAQGL-----GTPIRRG-------FGGLSILKWSPTGDYFFAAKF--------  274 (350)
Q Consensus       224 -g~~l~~~~-~-------d~g~i~iwd~~~~~-----~~~~~~~-------~~~v~~~~~sp~g~~l~~~~~--------  274 (350)
                       +..|+.+. .       . ..|..|+.....     ...+...       ......++|.|||.+.++.+.        
T Consensus        79 ~~g~lYv~~~~~~~~g~~~-~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q  157 (353)
T 2g8s_A           79 QSRRIWLSYSEVGDDGKAG-TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQ  157 (353)
T ss_dssp             HHCEEEEEEEEECSSSCEE-EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGG
T ss_pred             CCCEEEEEEeCCCCCCCce-eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccC
Confidence             45554442 2       2 257777665431     1112111       122457999999965555433        


Q ss_pred             -----CCeEEEEeCCCC-------------ceeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          275 -----DGTFYLWETNTW-------------TSEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       275 -----d~~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                           .+.|.-++.+..             ....+.........++|+|+...|.++.
T Consensus       158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEe
Confidence                 246777776532             1111111223468899999433444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.77  E-value=0.063  Score=49.50  Aligned_cols=174  Identities=10%  Similarity=0.039  Sum_probs=87.5

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEecCCC-C--CCeeE-EEEeeCCCeEEEEec------CCcEEEEecCCCCCCc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDS-Q--RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGNAA  180 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~-~--~~v~~-~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~  180 (350)
                      +..|++++.|+.+..+|..+  ++..-...... .  ..+.+ ... -+ ..+++++.      ++.|+.+|..+++...
T Consensus       115 ~~~v~v~~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKT--GKINWEVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTT--CCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCC--CCEEEEecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            55677778899998888854  55443332111 0  11221 111 23 45655554      6889999988665544


Q ss_pred             eeecccccccc--e--e----cC-C----CCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC------------C-
Q 018806          181 SVRSGAASFLG--A--L----SR-G----PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------S-  234 (350)
Q Consensus       181 ~~~~~~~~~~~--~--~----~~-~----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------------~-  234 (350)
                      .+.........  .  .    .+ +    ....|.- .............+++.++...++.++.+            + 
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~-~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEG-DAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSST-TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcc-cceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            33322110000  0  0    00 0    0000000 00000000111245666665566555431            0 


Q ss_pred             --CeEEEEeCCCCCceeeeecC---C----CeEE---EEEcCCCC---EEEEEecCCeEEEEeCCCCcee
Q 018806          235 --SSFTIWDVAQGLGTPIRRGF---G----GLSI---LKWSPTGD---YFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       235 --g~i~iwd~~~~~~~~~~~~~---~----~v~~---~~~sp~g~---~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                        +.|..+|.++++.+......   .    .+..   +...++|+   .++.++.+|.++++|.++++..
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence              26999999999876543211   1    1111   22235774   5677888999999999999873

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.76  E-value=0.11  Score=44.76  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=79.0

Q ss_pred             CCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC-
Q 018806          145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-  223 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-  223 (350)
                      .....++|.|+| .++++..++.|++++..  +. ..+...                   ..... .......++++|+ 
T Consensus        29 ~~P~~ia~~pdG-~l~V~e~~g~I~~~d~~--G~-~~~~~~-------------------~v~~~-g~~g~~gia~~pdf   84 (354)
T 3a9g_A           29 EVPWSIAPLGGG-RYLVTERPGRLVLISPS--GK-KLVASF-------------------DVANV-GEAGLLGLALHPEF   84 (354)
T ss_dssp             SCEEEEEEEETT-EEEEEETTTEEEEECSS--CE-EEEEEC-------------------CCCCS-TTCSEEEEEECTTT
T ss_pred             CCCeEEEEcCCC-eEEEEeCCCEEEEEeCC--Cc-eEeecc-------------------ceeec-CCCceeeEEeCCCC
Confidence            357899999996 56666677988888632  22 111110                   00111 1246789999997 


Q ss_pred             --CCeEEEEEe----C----CCeEEEEeCCCC--C---ceeee---e--cCCCeEEEEEcCCCCEEEEEec---------
Q 018806          224 --GRYLASASY----E----SSSFTIWDVAQG--L---GTPIR---R--GFGGLSILKWSPTGDYFFAAKF---------  274 (350)
Q Consensus       224 --g~~l~~~~~----d----~g~i~iwd~~~~--~---~~~~~---~--~~~~v~~~~~sp~g~~l~~~~~---------  274 (350)
                        +..|+.+..    +    + .|..|+....  .   ...+.   .  .......++|.|||.+.++.+.         
T Consensus        85 ~~~g~lyv~~~~~~~~~~~~~-~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d  163 (354)
T 3a9g_A           85 PKKSWVYLYASYFAEGGHIRN-RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQD  163 (354)
T ss_dssp             TTSCEEEEEEEEECGGGCEEE-EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred             CcCCEEEEEEeccCCCCCcce-EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccC
Confidence              455544432    2    3 6778877654  1   11111   1  1123467999999986665432         


Q ss_pred             ----CCeEEEEeCCCC--------ceeccccCCCCeEEEEEcC-CCCEEEEEE
Q 018806          275 ----DGTFYLWETNTW--------TSEPWSSTSGFVTGATWDP-EGRMILLAF  314 (350)
Q Consensus       275 ----d~~v~iwd~~~~--------~~~~~~~~~~~v~~~~~s~-~g~~l~~~~  314 (350)
                          .+.|.-++.+..        ....+.........++|+| +|++. ++.
T Consensus       164 ~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~-v~d  215 (354)
T 3a9g_A          164 LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMV-ATE  215 (354)
T ss_dssp             TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEE-EEE
T ss_pred             CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEE-EEe
Confidence                245666665432        1111111122357899999 56544 444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.62  E-value=0.31  Score=42.52  Aligned_cols=161  Identities=12%  Similarity=0.144  Sum_probs=93.4

Q ss_pred             ecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCC---CCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeec
Q 018806          108 HQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS---QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  184 (350)
Q Consensus       108 sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  184 (350)
                      ..+|..|+++ .++.||.-++....  ....+...+   -..|..+..+|+| .+++..++..|.|-.++.+..... ..
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~~~V~Vv~LP~~~~~~~-~~  103 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFNDNEIFVMEVPWGYSNVE-DV  103 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTTS-SEEEEECSSEEEEEECCTTCSCCC-CH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCC--cceEEecCcccccCceeEEEECCCC-CEEEEecCCeEEEEEecCccccCc-cc
Confidence            3466666664 56788888886332  222332222   2368889999995 455556677899999883221110 00


Q ss_pred             ccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC---CCeEEEEEeCCCeEEEEeCCCCCceee-e-------e-
Q 018806          185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTPI-R-------R-  252 (350)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~d~g~i~iwd~~~~~~~~~-~-------~-  252 (350)
                      .........      .+ ............|..+.|+|-   +..|++-..| ++|++||+......+. .       + 
T Consensus       104 ~~~~~~q~~------ty-~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD-~~Ir~yDl~~s~~~P~~L~k~~~~fg~  175 (452)
T 3pbp_A          104 SIQDAFQIF------HY-SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED-DTITMFDILNSQEKPIVLNKPNNSFGL  175 (452)
T ss_dssp             HHHHTTEEE------EE-EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT-SCEEEEETTCTTSCCEEESCCCSEEES
T ss_pred             cccccccee------EE-EcCCcccCCCCceeEEEeccccCCCCeEEEEecC-CEEEEEEcccCCCCCcchhccccccCC
Confidence            000000000      00 000111111368999999995   5578888888 5999999986432211 1       1 


Q ss_pred             --cCCCeEEEEEcCCCCEEEEEe--cCCeEEEE
Q 018806          253 --GFGGLSILKWSPTGDYFFAAK--FDGTFYLW  281 (350)
Q Consensus       253 --~~~~v~~~~~sp~g~~l~~~~--~d~~v~iw  281 (350)
                        ....+.+++|..+|-.|...+  .+|.|+-.
T Consensus       176 d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          176 DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence              114588999999887777655  77888754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.61  E-value=0.052  Score=51.15  Aligned_cols=169  Identities=12%  Similarity=0.078  Sum_probs=94.0

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCceeEecCCCC---CCeeE-EEEeeCCCeEEEEec------CCcEEEEecCCCCCCc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ---RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGNAA  180 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~---~~v~~-~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~  180 (350)
                      +..|++++.|+.+..+|..+  ++..-.......   ..+.+ ... .+ ..++++..      ++.|+.+|..+++...
T Consensus       117 ~~~v~v~~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~P~v-~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKT--GKAIWSQQTTDPAKPYSITGAPRV-VK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTT--CCEEEEEECSCTTSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCC--CCEeeeeccCCCCCcceecCCCEE-EC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence            45677788899999999854  654443322111   11111 111 13 45555433      4789999988665544


Q ss_pred             eeecccccccce-----e-----cCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC---------------
Q 018806          181 SVRSGAASFLGA-----L-----SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS---------------  235 (350)
Q Consensus       181 ~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g---------------  235 (350)
                      .+......+...     +     .......|.    ..+. ......++++|+...++.++.+ +               
T Consensus       193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~----~~~g-g~~w~~~a~d~~~~~vy~~~~~-g~~w~~~~~~~~~gd~  266 (668)
T 1kv9_A          193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWK----LGGG-GTVWDSMAYDPELDLLYVGTGN-GSPWNREVRSPGGGDN  266 (668)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH----HCEE-CCCCSCEEEETTTTEEEEECCC-EESSCHHHHSTTCCCC
T ss_pred             EecccCCCCCccccccccccccccCCccceee----eCCC-CccccceEEcCCCCEEEEeCCC-CCccccCCCCCCCCCc
Confidence            433211000000     0     000000000    0011 1233467888888888777655 3               


Q ss_pred             ----eEEEEeCCCCCceeeeec---C-------CCeEEEEEcCCCC---EEEEEecCCeEEEEeCCCCcee
Q 018806          236 ----SFTIWDVAQGLGTPIRRG---F-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       236 ----~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~sp~g~---~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                          .|..+|.++++.......   .       .+.....+..+|+   .++.++.+|.++++|.++|+..
T Consensus       267 l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          267 LYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence                499999999987654432   1       2222233334675   6888899999999999999874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.56  E-value=0.1  Score=44.45  Aligned_cols=142  Identities=13%  Similarity=0.164  Sum_probs=84.9

Q ss_pred             CCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECC----CCCe--EE
Q 018806          155 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRY--LA  228 (350)
Q Consensus       155 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~g~~--l~  228 (350)
                      ....++....++.+.+||+. ++....+..                            +.+..+..-|    .|+.  ++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~~~~----------------------------g~~nnVD~r~~~~l~g~~~dla   89 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD-GKMLHSYNT----------------------------GKLNNVDIRYDFPLNGKKVDIA   89 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT-SCEEEEECC----------------------------SCEEEEEEEEEEEETTEEEEEE
T ss_pred             CccEEEEEcCCCCEEEEcCC-CcEEEEccC----------------------------CCcccEEEecccccCCceEeEE
Confidence            33455555556889999994 443333211                            2344444433    2332  33


Q ss_pred             EEE-eC--CCeEEEEeCC--CCCceeeee------cC-CCeEEEEE--cCC-CC-EEEEEecCCeEEEEeCC---CCce-
Q 018806          229 SAS-YE--SSSFTIWDVA--QGLGTPIRR------GF-GGLSILKW--SPT-GD-YFFAAKFDGTFYLWETN---TWTS-  288 (350)
Q Consensus       229 ~~~-~d--~g~i~iwd~~--~~~~~~~~~------~~-~~v~~~~~--sp~-g~-~l~~~~~d~~v~iwd~~---~~~~-  288 (350)
                      .++ .+  +++|.+|++.  +++...+..      .. ..+..+|+  +|. ++ ++++...+|.+..|++.   .++. 
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~  169 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS  169 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence            333 33  3599999763  443322211      11 55677887  774 54 57778888999998883   3322 


Q ss_pred             ---eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          289 ---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       289 ---~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                         .+.....+.+..|+..+....|+++-... -+|.++..
T Consensus       170 ~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~  209 (355)
T 3amr_A          170 GKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAE  209 (355)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEECS
T ss_pred             ceEEEEecCCCCcceEEEcCCCCeEEEecccc-eEEEEeCC
Confidence               23334556788999999999999887553 47777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.51  E-value=0.21  Score=44.58  Aligned_cols=109  Identities=12%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             CCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeecc-CCCCCceeeEEECC
Q 018806          145 RDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP  222 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp  222 (350)
                      ...+.|+|.|+|+ ++++... +.|++++... +....+....                  ..+. .........|+|+|
T Consensus        27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~-g~~~~~~~~~------------------~~~~~~~g~~Gllgia~~P   86 (454)
T 1cru_A           27 NKPHALLWGPDNQ-IWLTERATGKILRVNPES-GSVKTVFQVP------------------EIVNDADGQNGLLGFAFHP   86 (454)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTT-CCEEEEEECT------------------TCCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEcCCCc-EEEEEcCCCEEEEEECCC-CcEeEEecCC------------------ccccccCCCCceeEEEECC
Confidence            3567999999965 5555555 4687776542 2211111100                  0010 01125678999999


Q ss_pred             C---CCeEEEEEeC------------CCeEEEEeCCCCC-----ceeeee-----cCCCeEEEEEcCCCCEEEEEe
Q 018806          223 D---GRYLASASYE------------SSSFTIWDVAQGL-----GTPIRR-----GFGGLSILKWSPTGDYFFAAK  273 (350)
Q Consensus       223 ~---g~~l~~~~~d------------~g~i~iwd~~~~~-----~~~~~~-----~~~~v~~~~~sp~g~~l~~~~  273 (350)
                      +   +..|+.+...            ...|..|+.....     ...+..     .......++|.|||.+.++.+
T Consensus        87 df~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           87 DFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            5   5555444321            1256666654321     111221     124578899999998766544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.41  E-value=0.076  Score=49.06  Aligned_cols=47  Identities=15%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeE--EEEEcCCCCEEE
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS--ILKWSPTGDYFF  270 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~--~~~~sp~g~~l~  270 (350)
                      .+..++.++.| |.++.||.++++.+........+.  -+.|..+|+..+
T Consensus       496 agglvf~g~~d-g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          496 AGNLVFTGTGD-GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             TTTEEEEECTT-SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCEEEEECCC-CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            35677778888 799999999999876555444433  266667887543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.35  E-value=0.023  Score=44.80  Aligned_cols=98  Identities=10%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee------eeec--CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP------IRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  285 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~------~~~~--~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~  285 (350)
                      .+..++|+|+|...+.  .+ |.++-.+..+.....      ....  -.....+.|.|+|.+.++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~-G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LN-DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ET-TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eC-CeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            6779999999886555  55 688887776533221      1111  122478999999987776  569998887644


Q ss_pred             Cceeccc------c--CCCCeEEEEEcCCCCEEEEEECCC
Q 018806          286 WTSEPWS------S--TSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       286 ~~~~~~~------~--~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      .....+.      .  .-..+..+.|.|+|.+-++. ++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence            3322221      1  11357899999999988877 443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.35  E-value=0.27  Score=38.77  Aligned_cols=149  Identities=15%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeec--cCCCCCceeeEEECC
Q 018806          145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGP  222 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp  222 (350)
                      ..+..++|+|+|. |.++ .++.++-.+.........+...                   ..+  .+.  ..-.++.|.|
T Consensus        41 ~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~-------------------t~IG~~Gw--~~F~a~~fD~   97 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRA-------------------KKIGNGGW--NQFQFLFFDP   97 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHC-------------------EEEECSCG--GGCSEEEECT
T ss_pred             ccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccc-------------------cEeccccc--ccceEEEECC
Confidence            3688999999855 5555 7776555444322111111110                   000  011  1247889999


Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCce------eeee--cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec----
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGT------PIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----  290 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~------~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~----  290 (350)
                      +|.+.++  .| |.|+-++-.+....      ....  .-..+..+.|.|+|.+.++.  |+.++-....++....    
T Consensus        98 ~G~LYav--~d-G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~  172 (236)
T 1tl2_A           98 NGYLYAV--SK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLAR  172 (236)
T ss_dssp             TSCEEEE--ET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHH
T ss_pred             CCCEEEe--CC-CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccc
Confidence            9987777  56 79988886443221      1111  11568899999999866665  7776554444332211    


Q ss_pred             --cc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          291 --WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       291 --~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                        ..  ..-.....+.|+++|...++.   +..++...
T Consensus       173 ~~~~g~~g~~~yr~l~f~~~G~l~~v~---~g~~Y~~~  207 (236)
T 1tl2_A          173 ATKIGQGGWDTFKFLFFSSVGTLFGVQ---GGKFYEDY  207 (236)
T ss_dssp             CEEEESSSGGGEEEEEECTTSCEEEEE---TTEEEEES
T ss_pred             cceeccCCcceEEEEEECCCCcEEEEe---CCeEEecC
Confidence              11  122234567799999988876   34566553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.07  E-value=0.9  Score=42.02  Aligned_cols=30  Identities=10%  Similarity=0.207  Sum_probs=22.6

Q ss_pred             EEEcCCCCEEEEEecC----------------CeEEEEeCCCCcee
Q 018806          260 LKWSPTGDYFFAAKFD----------------GTFYLWETNTWTSE  289 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d----------------~~v~iwd~~~~~~~  289 (350)
                      +++.++...++.+..+                +.|..+|.++++.+
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~  291 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK  291 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence            4566777777777654                38999999999984

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.44  E-value=0.24  Score=42.24  Aligned_cols=101  Identities=19%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-------ecCCCeEEEEEcCC---CCEEEEE---ecCCeEE
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-------RGFGGLSILKWSPT---GDYFFAA---KFDGTFY  279 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~---g~~l~~~---~~d~~v~  279 (350)
                      ...+.++|.|||+.+++.-.. |.|++++...++...+.       ...+....++++|+   ..+|.+.   ..++.|.
T Consensus        32 ~~P~~ia~~pdG~llVter~~-G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDE-ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTT-CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecC-CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            467899999999866655335 79999987666543322       23567899999995   3444432   2345666


Q ss_pred             EEeCCCC-----ce---ec----cc-cCCCCeEEEEEcCCCCEEEEEE
Q 018806          280 LWETNTW-----TS---EP----WS-STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       280 iwd~~~~-----~~---~~----~~-~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      -|.+..+     +.   ..    +. .....-..++|.|||.+.++.+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            6666542     11   11    11 1122346799999997666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.52  E-value=1.7  Score=35.86  Aligned_cols=88  Identities=17%  Similarity=0.209  Sum_probs=49.2

Q ss_pred             CCCeEEEEEeCC----CeEEEEeCCCCCceeeeecCC---CeEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCceec
Q 018806          223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP  290 (350)
Q Consensus       223 ~g~~l~~~~~d~----g~i~iwd~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~~~~  290 (350)
                      +++.++.++.+.    ..+.+||..+.+...+.....   ....+.  -++++++.|+.+     ..+.+||+.+.+-..
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            667777766431    268999998876554432111   112222  266677777654     479999998876543


Q ss_pred             cccC---CCCeEEEEEcCCCCEEEEEE
Q 018806          291 WSST---SGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       291 ~~~~---~~~v~~~~~s~~g~~l~~~~  314 (350)
                      +...   ......+.  -+++.+++|+
T Consensus       237 ~~~~p~~r~~~~~~~--~~~~i~v~GG  261 (301)
T 2vpj_A          237 VTSMTTPRCYVGATV--LRGRLYAIAG  261 (301)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred             CCCCCCcccceeEEE--ECCEEEEEcC
Confidence            3211   11112222  2567766665

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.93  E-value=0.29  Score=44.25  Aligned_cols=100  Identities=11%  Similarity=0.057  Sum_probs=65.1

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCC------Cc----eeee---ecCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQG------LG----TPIR---RGFGGLSILKWSPTGDYFFAAKFDGTFYL  280 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~------~~----~~~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  280 (350)
                      ....+..+|||++++.++.-+.++.++|++.-      +.    ..+.   .-.-+....+|.++|.-..+.--|..|..
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            45678999999999988876569999998742      11    0111   12345788999999944445567999999


Q ss_pred             EeCCCC----------cee-ccccCCCCeEEEE------EcCCCCEEEEEE
Q 018806          281 WETNTW----------TSE-PWSSTSGFVTGAT------WDPEGRMILLAF  314 (350)
Q Consensus       281 wd~~~~----------~~~-~~~~~~~~v~~~~------~s~~g~~l~~~~  314 (350)
                      |++...          ... ++.-| ..+-.+.      -.+||++|++.+
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEec
Confidence            998653          111 12122 2222332      267899998876

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.31  E-value=2.1  Score=40.45  Aligned_cols=179  Identities=9%  Similarity=-0.018  Sum_probs=86.1

Q ss_pred             CCCEEEEEECC------CeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC--CcEEEEecCCCCCCce
Q 018806          110 HKHIVAFISGS------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAAS  181 (350)
Q Consensus       110 ~g~~la~~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~~~~~  181 (350)
                      +++.++.|+.+      ..+.+||..+.+.......  .....-.+++...++..++.+|.+  +.+.+||....     
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~--p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~-----  523 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE-----  523 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC--SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT-----
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC--CCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC-----
Confidence            67777777643      2466777654222111111  111111222332365666666654  36788887632     


Q ss_pred             eecccccccceecCCCCCceEEeee---ccCCCCCceeeEEECCC-CCeEEEEEeCC------CeEEEEeCCCCC-----
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDF---LRSQNGEQITALSWGPD-GRYLASASYES------SSFTIWDVAQGL-----  246 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~-g~~l~~~~~d~------g~i~iwd~~~~~-----  246 (350)
                                        .|.....   +.... .....+.+..+ ++.++.|+.+.      ..+.+||+.+..     
T Consensus       524 ------------------~W~~~~~~g~~p~~r-~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~  584 (695)
T 2zwa_A          524 ------------------IFKDVTPKDEFFQNS-LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPI  584 (695)
T ss_dssp             ------------------EEEECCCSSGGGGSC-CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCE
T ss_pred             ------------------ceEEccCCCCCCCcc-cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccce
Confidence                              2222221   11111 12233555554 66777776521      268999998877     


Q ss_pred             -ceeeeec--CC-CeEEEEEcCCCCEEEEEec--------CCeEEEEeCCCCceeccc--cC------CCC-eEEEEEcC
Q 018806          247 -GTPIRRG--FG-GLSILKWSPTGDYFFAAKF--------DGTFYLWETNTWTSEPWS--ST------SGF-VTGATWDP  305 (350)
Q Consensus       247 -~~~~~~~--~~-~v~~~~~sp~g~~l~~~~~--------d~~v~iwd~~~~~~~~~~--~~------~~~-v~~~~~s~  305 (350)
                       ...+...  .. .-.+++...++++++.|+.        ...|.+||..+.+-....  ..      ... -.+++...
T Consensus       585 ~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~  664 (695)
T 2zwa_A          585 TVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTS  664 (695)
T ss_dssp             EEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC-
T ss_pred             EEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeC
Confidence             2332221  11 1112333333777777764        346999999887653211  00      000 12344456


Q ss_pred             CCCEEEEEE
Q 018806          306 EGRMILLAF  314 (350)
Q Consensus       306 ~g~~l~~~~  314 (350)
                      +|+.+++|+
T Consensus       665 ~g~i~v~GG  673 (695)
T 2zwa_A          665 MGTIHIIGG  673 (695)
T ss_dssp             --CEEEECC
T ss_pred             CCEEEEEeC
Confidence            667777775

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.74  E-value=3.6  Score=33.84  Aligned_cols=65  Identities=11%  Similarity=0.128  Sum_probs=38.8

Q ss_pred             CCCeEEEEEeCC----CeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCcee
Q 018806          223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE  289 (350)
Q Consensus       223 ~g~~l~~~~~d~----g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~~~  289 (350)
                      +++.++.++.+.    ..+.+||..+.+...+....   .....+.  -++++++.|+.+     ..+.+||.++.+-.
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            566677776531    26999999887655443211   1112222  266777777655     36788888876543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.40  E-value=4  Score=33.59  Aligned_cols=68  Identities=10%  Similarity=0.017  Sum_probs=39.7

Q ss_pred             CCCeEEEEEeCC----CeEEEEeCCCCCceeeeecCCC-eEEEEEcCCCCEEEEEecCC-----eEEEEeCCCCceec
Q 018806          223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTSEP  290 (350)
Q Consensus       223 ~g~~l~~~~~d~----g~i~iwd~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~~~~~d~-----~v~iwd~~~~~~~~  290 (350)
                      +++.++.++.+.    ..+.+||..+.+...+.....+ ....+..-++++++.|+.++     .+.+||.++.+-..
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            567777776531    2689999988765544322111 11111122677777776543     58899998776543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.10  E-value=6.2  Score=35.11  Aligned_cols=54  Identities=15%  Similarity=0.111  Sum_probs=33.6

Q ss_pred             eeEEEEecCCC-EEEEEECCCeEEEEEccCCC-CCceeEec----C----CCCCCeeEEEEeeC
Q 018806          102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSE-GKDACILT----S----DSQRDVKVLEWRPN  155 (350)
Q Consensus       102 V~~v~~sp~g~-~la~~s~d~~i~iw~~~~~~-~~~~~~~~----~----~~~~~v~~~~~sp~  155 (350)
                      -+.|+|.|||. .|+++...|.|++++.+... ...+..+.    .    ........|+|+|+
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            57899999996 45556789999988753210 11111111    0    11457889999986

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.90  E-value=5.2  Score=33.83  Aligned_cols=55  Identities=9%  Similarity=-0.157  Sum_probs=29.8

Q ss_pred             eEEEEeCCCCCceeeeecCCC-eEEEEEcCCCCEEEEEecCC------eEEEEeCCCCceec
Q 018806          236 SFTIWDVAQGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFDG------TFYLWETNTWTSEP  290 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~~~~~d~------~v~iwd~~~~~~~~  290 (350)
                      .+.+||..+.+...+.....+ ....+...++++++.|+.++      .|.++++++++...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            478899988765544322211 11122334677778887542      57777998888743

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.89  E-value=4.6  Score=33.25  Aligned_cols=89  Identities=13%  Similarity=0.005  Sum_probs=48.3

Q ss_pred             CCCeEEEEEeC--------CCeEEEEeCCCCCceeeeecCCC--eEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCc
Q 018806          223 DGRYLASASYE--------SSSFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWT  287 (350)
Q Consensus       223 ~g~~l~~~~~d--------~g~i~iwd~~~~~~~~~~~~~~~--v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~  287 (350)
                      +++.++.++.+        ...+.+||..+.+...+.....+  -.+++. -++++++.|+.+     ..+.+||+.+.+
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            56666666532        12688999988765544322111  112222 266677776543     468999998876


Q ss_pred             eeccccC---CCCeEEEEEcCCCCEEEEEE
Q 018806          288 SEPWSST---SGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       288 ~~~~~~~---~~~v~~~~~s~~g~~l~~~~  314 (350)
                      -..+...   ......+.+  +++.+++|+
T Consensus       228 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  255 (306)
T 3ii7_A          228 WKMVSPMPWKGVTVKCAAV--GSIVYVLAG  255 (306)
T ss_dssp             EEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred             EEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence            5433211   112222333  567777775

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.50  E-value=4.6  Score=35.95  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=59.6

Q ss_pred             CceeeEEECCCCC-eEEEEEeCCCeEEEEeCCCCC-cee-------eee-----cCCCeEEEEEcCC----CCEEEEEec
Q 018806          213 EQITALSWGPDGR-YLASASYESSSFTIWDVAQGL-GTP-------IRR-----GFGGLSILKWSPT----GDYFFAAKF  274 (350)
Q Consensus       213 ~~v~~~~~sp~g~-~l~~~~~d~g~i~iwd~~~~~-~~~-------~~~-----~~~~v~~~~~sp~----g~~l~~~~~  274 (350)
                      ...+.|+|.|+|. .|+++... |.|++++..... ...       +..     .......++|+|+    +.+.++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            3568999999996 45555666 799999754321 111       111     1457889999996    443333222


Q ss_pred             --C----------CeEEEEeCCCC---c-----ee---ccc--cCCCCeEEEEEcCCCCEEEEEECC
Q 018806          275 --D----------GTFYLWETNTW---T-----SE---PWS--STSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       275 --d----------~~v~iwd~~~~---~-----~~---~~~--~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                        +          ..|.-|.+..+   .     .+   .+.  .....-..|+|.|||.+.++.++.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence              1          13444655431   1     11   111  223446889999999876665543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.69  E-value=8.3  Score=33.95  Aligned_cols=168  Identities=6%  Similarity=0.002  Sum_probs=99.5

Q ss_pred             ccCeeEEEEecCCCEEEEEEC-------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEe--eCCCeEEEEecC----
Q 018806           99 EVDLQGVSWHQHKHIVAFISG-------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCK----  165 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d----  165 (350)
                      +..|..-..+++.+|++..+-       .|.+.+|..+.    .......+|......+...  +....+++.+..    
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence            567888888999999886542       47788999852    2244445776544433332  111234444433    


Q ss_pred             CcEEEEecCCCC-CCceeecccccccceecCCCCCceEEeeeccC--CCCCceeeEEECCCCCeEEEEEeCCCeEEEEeC
Q 018806          166 GGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDV  242 (350)
Q Consensus       166 ~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~  242 (350)
                      ++++|.++.... ....+..                 +..+.+..  ....-..++..|+.-..++..+.- |.|.+||+
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~k-----------------k~vdv~fppe~~~DFPvamqvs~kygviyviTK~-G~i~lyDl  287 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPK-----------------KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY-GYIHLYDL  287 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCC-----------------EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT-SEEEEEET
T ss_pred             cEEEEEEcCCCccCCCCccc-----------------eeeeeeCCcccccCceeEEEecccCCEEEEEecC-ceEEEEec
Confidence            788998886431 1111100                 01111111  112345677888877788888888 79999999


Q ss_pred             CCCCceeeeec-CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          243 AQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       243 ~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      .++.+.....- ...|...+-+....=+++....|.|.--.++..+.
T Consensus       288 eTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          288 ETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             ccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            99988765543 34555555555444555566777776666666554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.39  E-value=6.8  Score=32.44  Aligned_cols=66  Identities=17%  Similarity=0.293  Sum_probs=38.9

Q ss_pred             CCCeEEEEEeCCC----eEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEecC--------------CeEEEE
Q 018806          223 DGRYLASASYESS----SFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD--------------GTFYLW  281 (350)
Q Consensus       223 ~g~~l~~~~~d~g----~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d--------------~~v~iw  281 (350)
                      +++.++.++.+..    .+.+||..+.+...+....   .....+.  -++++++.|+.+              ..+.+|
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y  273 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRY  273 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEe
Confidence            6677777776421    6889999887655443211   1112222  266677777653              247788


Q ss_pred             eCCCCceec
Q 018806          282 ETNTWTSEP  290 (350)
Q Consensus       282 d~~~~~~~~  290 (350)
                      |+++.+-..
T Consensus       274 d~~~~~W~~  282 (315)
T 4asc_A          274 NEEEKKWEG  282 (315)
T ss_dssp             ETTTTEEEE
T ss_pred             cCCCChhhh
Confidence            888766543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.28  E-value=6.9  Score=32.31  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=38.1

Q ss_pred             CCCeEEEEEeCC----CeEEEEeCCCCCceeeeecCC--CeEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCcee
Q 018806          223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG--GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE  289 (350)
Q Consensus       223 ~g~~l~~~~~d~----g~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~~~  289 (350)
                      +++.++.++.+.    ..+.+||+.+.+...+.....  .-.+++. -++++++.|+.+     ..+.+||..+.+-.
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            566777776531    269999998876544332111  1112222 256677777643     46788888776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.50  E-value=11  Score=35.61  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             CCCCeEEEEEeCCC-eEEEEeCCCCCceeeee------cCCCeEEEEEcCC-CCEEEEEec--C-----CeEEEEeCCCC
Q 018806          222 PDGRYLASASYESS-SFTIWDVAQGLGTPIRR------GFGGLSILKWSPT-GDYFFAAKF--D-----GTFYLWETNTW  286 (350)
Q Consensus       222 p~g~~l~~~~~d~g-~i~iwd~~~~~~~~~~~------~~~~v~~~~~sp~-g~~l~~~~~--d-----~~v~iwd~~~~  286 (350)
                      .+++.++.|+.+.. .+.+||..+.....+..      .......+.+..+ ++.++.|+.  +     +.+.+||+.+.
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            47788888876521 58999998876544332      1122233555655 666677765  2     46999999887


Q ss_pred             c
Q 018806          287 T  287 (350)
Q Consensus       287 ~  287 (350)
                      +
T Consensus       579 ~  579 (695)
T 2zwa_A          579 N  579 (695)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.26  E-value=8.1  Score=31.67  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             CCCeEEEEEeCC------CeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCce
Q 018806          223 DGRYLASASYES------SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTS  288 (350)
Q Consensus       223 ~g~~l~~~~~d~------g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~~  288 (350)
                      +++.++.++.+.      ..+.+||..+.+...+....   .....+.  -++++++.|+.+     ..+.+||..+.+-
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            566666665421      25889999887654432211   1112222  266777777654     4799999988765


Q ss_pred             eccccCC--CCeEEEEEcCCCCEEEEEE
Q 018806          289 EPWSSTS--GFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       289 ~~~~~~~--~~v~~~~~s~~g~~l~~~~  314 (350)
                      ..+....  ..-..++ .-+++.+++|+
T Consensus       233 ~~~~~~~~~r~~~~~~-~~~~~i~v~GG  259 (302)
T 2xn4_A          233 RQVADMNMCRRNAGVC-AVNGLLYVVGG  259 (302)
T ss_dssp             EEECCCSSCCBSCEEE-EETTEEEEECC
T ss_pred             eeCCCCCCccccCeEE-EECCEEEEECC
Confidence            4332111  1111222 23566766665

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.25  E-value=1.4  Score=39.99  Aligned_cols=108  Identities=13%  Similarity=0.079  Sum_probs=62.7

Q ss_pred             CeeEEEEeeCCCeEEEEec-CCcEEEEecCCC-----CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEE
Q 018806          146 DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP-----GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  219 (350)
Q Consensus       146 ~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (350)
                      ....+..+|||+++++++. +.++.++|+..-     .........                 +.....  -.-.....+
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~-----------------~~ae~e--~GlGPlHt~  384 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDV-----------------IVGEPE--LGLGPLHTT  384 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGG-----------------EEECCB--CCSCEEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccc-----------------eEeecc--CCCcccEEE
Confidence            4567889999999888888 699999999721     111000000                 011111  123567889


Q ss_pred             ECCCCCeEEEEEeCCCeEEEEeCCCC------Cc----eeeeecCCCeEEEEE------cCCCCEEEEEe
Q 018806          220 WGPDGRYLASASYESSSFTIWDVAQG------LG----TPIRRGFGGLSILKW------SPTGDYFFAAK  273 (350)
Q Consensus       220 ~sp~g~~l~~~~~d~g~i~iwd~~~~------~~----~~~~~~~~~v~~~~~------sp~g~~l~~~~  273 (350)
                      |.++|.-..+-..|+ .|..|++...      +.    .....-...+-.+.-      .|+|+||++..
T Consensus       385 Fd~~G~aYTtlfidS-qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          385 FDGRGNAYTTLFIDS-QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             ECSSSEEEEEETTTT-EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ECCCCceEeeeeecc-eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            999994444444675 9999998643      11    111112233333333      47888888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.83  E-value=8.9  Score=31.60  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             CCCeEEEEEeCC----CeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCceec
Q 018806          223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP  290 (350)
Q Consensus       223 ~g~~l~~~~~d~----g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----~~v~iwd~~~~~~~~  290 (350)
                      +++.++.++.+.    ..+.+||..+.+...+....   .....+.+  ++++++.|+.+     ..+.+||+.+.+-..
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            566667766431    26899999877544332211   11222222  66777777654     569999998876543


Q ss_pred             cccCCC--CeEEEEEcCCCCEEEEEE
Q 018806          291 WSSTSG--FVTGATWDPEGRMILLAF  314 (350)
Q Consensus       291 ~~~~~~--~v~~~~~s~~g~~l~~~~  314 (350)
                      +.....  .-.+++. -+++.+++|+
T Consensus       246 ~~~~p~~r~~~~~~~-~~~~i~v~GG  270 (308)
T 1zgk_A          246 VAPMKHRRSALGITV-HQGRIYVLGG  270 (308)
T ss_dssp             CCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred             CCCCCCCccceEEEE-ECCEEEEEcC
Confidence            321111  1112222 2566766665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.01  E-value=13  Score=32.67  Aligned_cols=215  Identities=11%  Similarity=0.089  Sum_probs=121.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      .-+.-.+|..+.||.-. ..++.|+|++.  ...+....  ....|.-=+|-.+ + .++--++..|+-|++.....+..
T Consensus        68 AdsAIMnP~~~iiALra-g~~lQiFnle~--K~klks~~--~~e~VvfWkWis~-~-~l~lVT~taVyHWsi~~~s~P~k  140 (494)
T 1bpo_A           68 ADSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL-N-TVALVTDNAVYHWSMEGESQPVK  140 (494)
T ss_dssp             CSEEEECSSSSCEEEEE-TTEEEEEETTT--TEEEEEEE--CSSCCCEEEEEET-T-EEEEECSSEEEEEESSSSCCCEE
T ss_pred             cceeeeCCCCcEEEEec-CCeEEEEchHH--hhhhccee--cCCCceEEEecCC-C-eEEEEcCCeeEEecccCCCCchh
Confidence            44566788888888754 78999999965  33334332  2346777788765 3 44555678899999975555555


Q ss_pred             eecccccc----cceecCCCCCceEEee------------------------eccCCCCCceeeEEECCCC-----CeEE
Q 018806          182 VRSGAASF----LGALSRGPGTRWTLVD------------------------FLRSQNGEQITALSWGPDG-----RYLA  228 (350)
Q Consensus       182 ~~~~~~~~----~~~~~~~~~~~~~~~~------------------------~~~~~~~~~v~~~~~sp~g-----~~l~  228 (350)
                      +...+...    +-....+.+.+|.++-                        .+.||. +..  ..+-.+|     ..++
T Consensus       141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha-a~F--~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-ASF--AQFKMEGNAEESTLFC  217 (494)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE-EEE--EEEECTTCSSEEEEEE
T ss_pred             heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee-eee--EEEecCCCCCCceEEE
Confidence            54433222    2234556677776432                        233332 111  1221222     2333


Q ss_pred             EEEeC--CCeEEEEeCCCC---Cc---e---eee-ec---CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-
Q 018806          229 SASYE--SSSFTIWDVAQG---LG---T---PIR-RG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-  292 (350)
Q Consensus       229 ~~~~d--~g~i~iwd~~~~---~~---~---~~~-~~---~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-  292 (350)
                      .+...  .+.+.+.++...   ..   .   .+. ..   .+-..++..++.-..+...+.-|.|++||++++.+.... 
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence            34332  258999988543   11   0   011 11   234567888888788888899999999999999984322 


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       293 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      -....|..-+-+.+..-++.- +..+.+..+.+..
T Consensus       298 Is~~~iF~t~~~~~~~Gi~~V-nr~GqVl~v~v~e  331 (494)
T 1bpo_A          298 ISGETIFVTAPHEATAGIIGV-NRKGQVLSVCVEE  331 (494)
T ss_dssp             CCSSCEEEEEEETTTTEEEEE-ETTCEEEEEEECT
T ss_pred             ccCCceEEecccCCCCcEEEE-ccCceEEEEEEcc
Confidence            122334333333333333322 2445666666654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.53  E-value=11  Score=31.16  Aligned_cols=67  Identities=13%  Similarity=0.137  Sum_probs=37.0

Q ss_pred             CCCeEEEEEeCC----CeEEEEeCCCCCceeeeecCCC-eEEEEEcCCCCEEEEEecC--------------CeEEEEeC
Q 018806          223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFD--------------GTFYLWET  283 (350)
Q Consensus       223 ~g~~l~~~~~d~----g~i~iwd~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~~~~~d--------------~~v~iwd~  283 (350)
                      +++.++.++.+.    ..+.+||..+.+...+.....+ ....+..-++++++.|+.+              ..+.+||+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~  285 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED  285 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEET
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeC
Confidence            567777776431    1578999988765443322111 1111112356666666543              35778888


Q ss_pred             CCCcee
Q 018806          284 NTWTSE  289 (350)
Q Consensus       284 ~~~~~~  289 (350)
                      .+.+-.
T Consensus       286 ~~~~W~  291 (318)
T 2woz_A          286 DKKEWA  291 (318)
T ss_dssp             TTTEEE
T ss_pred             CCCEeh
Confidence            776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.30  E-value=12  Score=31.45  Aligned_cols=107  Identities=7%  Similarity=-0.096  Sum_probs=48.4

Q ss_pred             CCCeEEEEEeC-----CCeEEEEeC--CCCCceeeeec--CC-CeEEEEEcCCCCEEEEEecC-----------------
Q 018806          223 DGRYLASASYE-----SSSFTIWDV--AQGLGTPIRRG--FG-GLSILKWSPTGDYFFAAKFD-----------------  275 (350)
Q Consensus       223 ~g~~l~~~~~d-----~g~i~iwd~--~~~~~~~~~~~--~~-~v~~~~~sp~g~~l~~~~~d-----------------  275 (350)
                      +++.++.++.+     ...+.+||+  .+.+...+...  .. .....+...++++++.|+.+                 
T Consensus       200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~  279 (357)
T 2uvk_A          200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE  279 (357)
T ss_dssp             TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred             CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence            56666666532     126778887  44433322211  11 11212223366777777632                 


Q ss_pred             -----CeEEEEeCCCCceeccccCC-CCeEEEEEcCCCCEEEEEE-CCC----eEEEEEEeCCCC
Q 018806          276 -----GTFYLWETNTWTSEPWSSTS-GFVTGATWDPEGRMILLAF-AGS----LTLGSIHFASKP  329 (350)
Q Consensus       276 -----~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~-~~~----~~~~~~~~~~~~  329 (350)
                           ..+.+||+.+.+-..+.... ......+...+++.+++|+ +..    ..++.+++..++
T Consensus       280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             TCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             cccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence                 25789999877653322111 1111122334677777777 332    245555555443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.12  E-value=13  Score=30.49  Aligned_cols=89  Identities=10%  Similarity=0.087  Sum_probs=47.6

Q ss_pred             CCCeEEEEEeC-C----CeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEec---------CCeEEEEeCCC
Q 018806          223 DGRYLASASYE-S----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKF---------DGTFYLWETNT  285 (350)
Q Consensus       223 ~g~~l~~~~~d-~----g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~---------d~~v~iwd~~~  285 (350)
                      +++.++.++.+ .    ..+.+||..+.+...+....   .....+.  -++++++.|+.         -..+.+||..+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            56777777654 1    26899999887654432211   1111222  26666666653         34589999988


Q ss_pred             CceeccccCCC--CeEEEEEcCCCCEEEEEE
Q 018806          286 WTSEPWSSTSG--FVTGATWDPEGRMILLAF  314 (350)
Q Consensus       286 ~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~  314 (350)
                      .+-..+.....  .-.+++.. +++.+++|+
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG  208 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV-KDKIFAVGG  208 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             CeEEECCCccchhhcceEEEE-CCEEEEEeC
Confidence            76543321111  11122222 566666664

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.56  E-value=14  Score=30.45  Aligned_cols=90  Identities=7%  Similarity=-0.027  Sum_probs=48.9

Q ss_pred             CCCCeEEEEEe-CC----CeEEEEeCCCCCceeeeecC---CCeEEEEEcCCCCEEEEEecCC-----eEEEEeCCCCce
Q 018806          222 PDGRYLASASY-ES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTS  288 (350)
Q Consensus       222 p~g~~l~~~~~-d~----g~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d~-----~v~iwd~~~~~~  288 (350)
                      -+++.++.++. ++    ..+.+||..+.+-..+....   .....+.  -++++++.|+.++     .+.+||..+.+-
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            35667777765 21    26899999887544433211   1112222  2677777777654     688999988765


Q ss_pred             eccccCC--CCeEEEEEcCCCCEEEEEE
Q 018806          289 EPWSSTS--GFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       289 ~~~~~~~--~~v~~~~~s~~g~~l~~~~  314 (350)
                      ..+....  ..-.+++ .-+++.+++|+
T Consensus       225 ~~~~~~p~~r~~~~~~-~~~~~l~v~GG  251 (315)
T 4asc_A          225 APFEAFPQERSSLSLV-SLVGTLYAIGG  251 (315)
T ss_dssp             EEECCCSSCCBSCEEE-EETTEEEEEEE
T ss_pred             EECCCCCCcccceeEE-EECCEEEEECC
Confidence            4332111  1111222 22567666665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=84.71  E-value=39  Score=34.81  Aligned_cols=179  Identities=11%  Similarity=0.123  Sum_probs=97.6

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCcee
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  182 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~  182 (350)
                      -+.-.+|..+.||.- ...++.|+|++.+.  ......  ....|.-=+|-.+  ..++--++..|+-|++.....+..+
T Consensus        69 dsAIMnP~~~iiALr-ag~~lQiFnl~~k~--klks~~--~~e~VvfWkWis~--~~l~lVT~~aVyHW~~~~~s~P~k~  141 (1630)
T 1xi4_A           69 DSAIMNPASKVIALK-AGKTLQIFNIEMKS--KMKAHT--MTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVKM  141 (1630)
T ss_pred             hhhccCCCcceEEEe-cCCeEEEeehHHhh--hhcccc--cCCCceEEEecCC--CeeEEEcCCeEEEeccCCCCccHHH
Confidence            344567888877765 37889999997532  223221  2345666677654  3445556678999999744444333


Q ss_pred             ecccc----cccceecCCCCCceEEeee------------------------ccCCCCCceeeEEEC--CC-CCeEEEEE
Q 018806          183 RSGAA----SFLGALSRGPGTRWTLVDF------------------------LRSQNGEQITALSWG--PD-GRYLASAS  231 (350)
Q Consensus       183 ~~~~~----~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~v~~~~~s--p~-g~~l~~~~  231 (350)
                      ...+.    ..+-....+++.+|.++--                        +.||. +....+...  +. ...++.+.
T Consensus       142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha-~~F~~~~~~~~~~~~~l~~f~~  220 (1630)
T 1xi4_A          142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-ASFAQFKMEGNAEESTLFCFAV  220 (1630)
T ss_pred             HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhH-hhhheeccCCCCCCceEEEEEE
Confidence            33221    1222344455666654322                        22221 111111111  11 22333332


Q ss_pred             e--CCCeEEEEeCCCC---Cce------eee-ec---CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          232 Y--ESSSFTIWDVAQG---LGT------PIR-RG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       232 ~--d~g~i~iwd~~~~---~~~------~~~-~~---~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      .  .+|.+.|.++...   ...      .+. ..   ..-..++..++.-..+...+.-|.|++||+.++.+.
T Consensus       221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence            2  1258888888543   111      011 11   123446777777677888888999999999999874

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=82.90  E-value=4.3  Score=37.32  Aligned_cols=58  Identities=14%  Similarity=0.230  Sum_probs=42.7

Q ss_pred             eEEEEEcCCCCEEEEEecC------------CeEEEEeCCCCceeccc--cCCCCeEEEEEcCCCCEEEEEE
Q 018806          257 LSILKWSPTGDYFFAAKFD------------GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d------------~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .-.|+|+|.|.++++-..+            ..+.+.+..+++..++.  .....++.++|+||++.|++..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            4568999999966654322            24667777788876544  3457899999999999998874

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=82.22  E-value=23  Score=30.41  Aligned_cols=203  Identities=12%  Similarity=0.110  Sum_probs=108.9

Q ss_pred             CeeEEEEecCCCEEEEEEC---------------CCeEEEEEccCCCCCceeEecCC-----CCCCeeEEEEe---eC--
Q 018806          101 DLQGVSWHQHKHIVAFISG---------------STQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWR---PN--  155 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~---------------d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~~~~s---p~--  155 (350)
                      .|..+...+.+++=+.=+.               .-+|.+||+.+.+.+.+..+...     ....+..+++.   |+  
T Consensus        88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~  167 (381)
T 3q6k_A           88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGD  167 (381)
T ss_dssp             CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTT
T ss_pred             EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCC
Confidence            5888888887764443111               12566788854311544444322     23457888887   21  


Q ss_pred             -CCeEEEEec--CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC----CCeEE
Q 018806          156 -GGRSLSVGC--KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD----GRYLA  228 (350)
Q Consensus       156 -~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----g~~l~  228 (350)
                       ++.+++.+.  ...+.|+|+..+.. ..+....+.+.....+.-++.     .+.-  ...+..++++|+    ++.|+
T Consensus       168 c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~pd~~~~~~i~G~-----~~~~--~~Gi~gIaLsp~~~~~~~~LY  239 (381)
T 3q6k_A          168 CSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFKAERPTKFDYGGK-----EYEF--KAGIFGITLGDRDSEGNRPAY  239 (381)
T ss_dssp             SCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGSCCSCEEEEETTE-----EEEE--CCCEEEEEECCCCTTSCCEEE
T ss_pred             CCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCccccCcceEECCE-----EeEe--ccCceEEEecCCcCCCCeEEE
Confidence             134544444  47899999984433 233322221110000000011     0110  147899999998    88898


Q ss_pred             EEEeCCCeEEEEeCCC-----C---CceeeeecCC---CeEEEEEc-CCCCEEEEEecCCeEEEEeCCC-C----ceecc
Q 018806          229 SASYESSSFTIWDVAQ-----G---LGTPIRRGFG---GLSILKWS-PTGDYFFAAKFDGTFYLWETNT-W----TSEPW  291 (350)
Q Consensus       229 ~~~~d~g~i~iwd~~~-----~---~~~~~~~~~~---~v~~~~~s-p~g~~l~~~~~d~~v~iwd~~~-~----~~~~~  291 (350)
                      .....+  -++|.+.+     .   ......+..+   .-..+++. .+|.++++--..+.|..|+..+ .    ....+
T Consensus       240 f~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l  317 (381)
T 3q6k_A          240 YLAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVV  317 (381)
T ss_dssp             EEESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEE
T ss_pred             EEECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEE
Confidence            887763  34444321     1   1122233332   33456775 6787777777788999999876 1    11222


Q ss_pred             c--cCCCCeEEEEEcCCCCEEEEE
Q 018806          292 S--STSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       292 ~--~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      .  ..-..+..+.+.++|.+.+.+
T Consensus       318 ~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          318 YTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EECCCccccCeEEECCCCeEEEEE
Confidence            2  122356788888888765555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=81.19  E-value=40  Score=34.72  Aligned_cols=169  Identities=6%  Similarity=-0.005  Sum_probs=88.4

Q ss_pred             ccCeeEEEEecCCCEEEEEE-------CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEe--eCCCeEEEEecC----
Q 018806           99 EVDLQGVSWHQHKHIVAFIS-------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCK----  165 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s-------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d----  165 (350)
                      +..|..-..+++.+|++..+       -.|.+.+|..+.+    ......+|.+....+...  +....+++.+..    
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence            55788888889999988654       3588889998532    233334665554444442  222344443332    


Q ss_pred             CcEEEEecCCC-CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC
Q 018806          166 GGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       166 ~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~  244 (350)
                      ++++|-++... .....+...    ...+.+.+          ... ..-..++..|+.-..++..+.- |.|.+||+.+
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk----~~~~~~~~----------~~~-~Dfpv~~~vs~k~g~iy~itk~-G~~~~~d~~t  289 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKK----AVDVFFPP----------EAQ-NDFPVAMQISEKHDVVFLITKY-GYIHLYDLET  289 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccc----cccccCCc----------ccc-cCcceEEEeccccCEEEEEecC-ceEEEEeccc
Confidence            78888888643 111111000    00000000          001 1234567777776777777777 7999999999


Q ss_pred             CCceeeeec-CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCc
Q 018806          245 GLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       245 ~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~  287 (350)
                      +.+.....- ...|...+-+....=+++....|.|.-..++...
T Consensus       290 ~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          290 GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             chhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            977643322 2333333323222223333345544444444333

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=80.78  E-value=8.2  Score=35.18  Aligned_cols=59  Identities=12%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             CeEEEEEcCCCCEEEEEec------------CCeEEEEeCCCCceecccc--CCCCeEEEEEcCCCCEEEEEE
Q 018806          256 GLSILKWSPTGDYFFAAKF------------DGTFYLWETNTWTSEPWSS--TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~------------d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ....+.|.++|.+.++...            ...|+.++..+++...+..  ....++.++|+||++.|+++.
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            3567999999987764321            2267788888888866553  245789999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 8e-09
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 215 ITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA 272
           I A+ + P+G   A+ S +++   F +    + +         G++ + +S +G    A 
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 273 KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMIL 311
             D    +W+          +     V+      +G  + 
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 27/176 (15%)

Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166
                    F+SG+     + ++  EG      T   + D+  + + PNG    +     
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDA 248

Query: 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 226
              ++                               L+ +        IT++S+   GR 
Sbjct: 249 TCRLFDLRAD------------------------QELMTYSHDNIICGITSVSFSKSGRL 284

Query: 227 LASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLW 281
           L +   +  +  +WD  +     +  G    +S L  +  G       +D    +W
Sbjct: 285 LLAGY-DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 28/137 (20%)

Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 164
           + +  + +  A  S      + D    +         +    +  + +  +G   L+   
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYD 290

Query: 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224
                +W                                   L   +   ++ L    DG
Sbjct: 291 DFNCNVW---------DALKA----------------DRAGVLAGHDNR-VSCLGVTDDG 324

Query: 225 RYLASASYESSSFTIWD 241
             +A+ S++ S   IW+
Sbjct: 325 MAVATGSWD-SFLKIWN 340

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.6 bits (124), Expect = 3e-08
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYF 269
           E I+  +W  D   +A     +    I++ +      +       G ++ + W+P  +  
Sbjct: 8   EPISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66

Query: 270 FAAKFDGTFYLWETNTWTSEPW 291
                D   Y+W     T +P 
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPT 88

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMIL 311
             W+           +   +++E +             +G VTG  W P+   I+
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG----GLSILKWSPTGD-- 267
             T LS+ P    +A    +S+     D       P+ +  G     ++ +K+SP     
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 268 YFFAAKFDGTFYLWETNT---------WTSEPWSSTSGFVTGATWDPEGRM 309
           Y  +    G   +W                  +   +G ++  +WD EGR 
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 25/202 (12%), Positives = 57/202 (28%), Gaps = 9/202 (4%)

Query: 82  SHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS 141
           +  +  +     V               ++      S S    VR +  +  +    L  
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR- 182

Query: 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW 201
           + +  V+ + W P    S      G     +        S      S    +     +  
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS-----GSRDKTIKMWDVSTG 237

Query: 202 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSIL 260
             +  L   +   +  + +   G+++ S + +  +  +WD         +      ++ L
Sbjct: 238 MCLMTLVGHDN-WVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 261 KWSPTGDYFFAAKFDGTFYLWE 282
            +  T  Y      D T  +WE
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 24/207 (11%), Positives = 61/207 (29%), Gaps = 12/207 (5%)

Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166
              +   +   S    + + + +       C+ T    R+   +      G  ++     
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVRPNQDGTLIASCSND 164

Query: 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 226
                         +        +  +S  P + ++ +                G  G +
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG-----SETKKSGKPGPF 219

Query: 227 LASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNT 285
           L S S + +   +WDV+ G+      G    +  + +   G +  +   D T  +W+   
Sbjct: 220 LLSGSRDKT-IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278

Query: 286 WTS-EPWSSTSGFVTGATWDPEGRMIL 311
               +  ++   FVT   +      ++
Sbjct: 279 KRCMKTLNAHEHFVTSLDFHKTAPYVV 305

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 28/189 (14%)

Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR------DVKVLEWRPNGGRSL 160
                      +GS    VR ++   G     L S+++        V  + +  +G   +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220
           S      + +W      N               S          +     + + + +++ 
Sbjct: 271 SGSLDRSVKLWNLQNANN--------------KSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG-------LSILKWSPTGDYFFAAK 273
             +  Y+ S S +      WD   G    + +G           +     P  + F    
Sbjct: 317 TQNDEYILSGS-KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 274 FDGTFYLWE 282
            D    +W+
Sbjct: 376 GDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 19/116 (16%)

Query: 215 ITALSWGPDGRYLASASYESS------------SFTIWDVAQGLGTPIRRGFGGLSILKW 262
           + ++ +  DG+ + S S + S            S +    +             +  +  
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMIL 311
           +   +Y  +   D     W+  +               +     G++  PE  +  
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 276
           +L +   G++  S   ++     W    G      +    +     S    Y      D 
Sbjct: 270 SLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 277 TFYLWE 282
              ++E
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 273
           QI +L + P G +LA     S+   +                 LS+ K++  G +F +  
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL-KFAYCGKWFVSTG 284

Query: 274 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL 311
            D     W T    S   S  S  V       + + I+
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV 322

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 8/86 (9%)

Query: 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF------GGLSILKWSPT 265
           GE + A++     R++ +         +WD++                   +   K  P 
Sbjct: 51  GEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 266 GDYFFAAKFDGTFYLWETNTWTSEPW 291
           G          T  +W+    T    
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIK 134

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 207 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPT 265
           L          L   P G  +   +   +S     V     T I        ++ K SP+
Sbjct: 12  LPRTARGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69

Query: 266 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 297
           G Y  +    G   +W+T   T    ++   F
Sbjct: 70  GYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 101

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 219 SWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 276
           +W PDG  +ASAS + +   IW+VA      T           L    T     +   +G
Sbjct: 245 TWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 277 TFYLWE 282
                 
Sbjct: 304 FINFVN 309

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 1/185 (0%)

Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 164
            +  + K+ +  +  ++  ++    +S+ +   +   +               R +++  
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203

Query: 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224
           K        S  G  A             S+    R   ++   +     + ++ + P  
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263

Query: 225 RYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284
           ++L +A       + W++           F   S++K + + +    A  D TF      
Sbjct: 264 KFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322

Query: 285 TWTSE 289
             T E
Sbjct: 323 DQTIE 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 5/61 (8%)

Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF----GGLSILKWSPTGDYFF 270
           I+ +   P    L   S++  S T++                    L    +    D   
Sbjct: 14  ISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 271 A 271
            
Sbjct: 73  Y 73

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 10/125 (8%), Positives = 26/125 (20%), Gaps = 2/125 (1%)

Query: 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242
           R+        ++  P     L D  R   G ++  +        L    + SS+     V
Sbjct: 94  RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV 153

Query: 243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGAT 302
                +  +                  +      +    +     +      +       
Sbjct: 154 PG--ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211

Query: 303 WDPEG 307
              + 
Sbjct: 212 CSSQA 216

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 9/112 (8%)

Query: 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------GFGGLSILKWSPT 265
           G  +        GRYL           + D+     T +             +       
Sbjct: 61  GYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 266 GDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGF-VTGATWDPEGRMILLAFA 315
             Y  A   +   + + +  T   +   ST G       + PE R+  +  +
Sbjct: 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 4/92 (4%)

Query: 218 LSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA-KF 274
            +      Y+   +Y  ++  + DVA      + +     G      +P     +     
Sbjct: 2   PALKAGHEYMIVTNY-PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 275 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPE 306
            G  Y  + +T  +   ++ S           
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 4/75 (5%)

Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274
            +    G    Y   A  E      +DV     T ++     L+ L+ S         K 
Sbjct: 279 YSVPVHGEFAAYYQGAP-EKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKD 334

Query: 275 DGTFYLWETNTWTSE 289
           DG  Y +       E
Sbjct: 335 DGKIYTFPLEKPEDE 349

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 9/112 (8%)

Query: 207 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSP 264
           + +  G Q            L S     S+  IWD+  G  L T         ++     
Sbjct: 210 IHTLTGHQSLTSGMELKDNILVSG-NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268

Query: 265 TGDYFFAAKFDGTFYLWETNT------WTSEPWSSTSGFVTGATWDPEGRMI 310
             ++   +  DGT  LW+  T        +     + G V          + 
Sbjct: 269 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.87
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.8
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.71
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.67
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.63
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.59
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.49
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.91
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.91
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.71
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.52
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.46
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.43
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.35
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.9
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.46
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.26
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.1
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.93
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.72
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.45
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.29
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.08
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.06
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.54
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.71
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.71
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.96
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.77
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.28
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.59
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.38
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.75

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=3.8e-30  Score=221.08  Aligned_cols=216  Identities=14%  Similarity=0.186  Sum_probs=166.0

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++|+|++++||+|+.||+|+|||+..  ++....+ ..|...|.+++|+|++..+++++.|+.+++|+........
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  133 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYT--TNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV  133 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEEEE-ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCC
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeeccc--ceeEEEE-ecccccEEeeEeeccceeeeeecccceeeccccccccccc
Confidence            399999999999999999999999999954  5555555 4789999999999999999999999999999976433221


Q ss_pred             eeec---cccccc-----------------------------------------ce----------ecCCCCCceEE---
Q 018806          181 SVRS---GAASFL-----------------------------------------GA----------LSRGPGTRWTL---  203 (350)
Q Consensus       181 ~~~~---~~~~~~-----------------------------------------~~----------~~~~~~~~~~~---  203 (350)
                      ....   ......                                         ..          +....++.+.+   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~  213 (340)
T d1tbga_         134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEEC
Confidence            1100   000000                                         00          00111222222   


Q ss_pred             -----eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee---ecCCCeEEEEEcCCCCEEEEEecC
Q 018806          204 -----VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTGDYFFAAKFD  275 (350)
Q Consensus       204 -----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~d  275 (350)
                           ...+.+|. ..|++++|+|++++|++++.| |.|++||++........   .+...+.+++|+|++++|++|+.|
T Consensus       214 ~~~~~~~~~~~h~-~~i~~v~~~p~~~~l~s~s~d-~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
T d1tbga_         214 REGMCRQTFTGHE-SDINAICFFPNGNAFATGSDD-ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             TTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT
T ss_pred             CCCcEEEEEeCCC-CCeEEEEECCCCCEEEEEeCC-CeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECC
Confidence                 33556675 799999999999999999999 79999999988765443   345679999999999999999999


Q ss_pred             CeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          276 GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       276 ~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      |.|++||+.+++. ..+.+|...|++++|+|++++|++++ |+.+.+|
T Consensus       292 g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            9999999999887 45678999999999999999999887 4444444

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.3e-30  Score=228.13  Aligned_cols=217  Identities=16%  Similarity=0.244  Sum_probs=168.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      +|+|++|||||++||+|+.|+.|+||+....+......+ .+|.++|.+++|+|+++++++++.|++|+|||+...    
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~----   83 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR----   83 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT----
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc----
Confidence            599999999999999999999999999964322233333 589999999999999999999999999999999732    


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-----eeecCC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGFG  255 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-----~~~~~~  255 (350)
                                         .+.....+.+|. ..|.+++|+|+++.|++++.+ |++++|++.......     ...|..
T Consensus        84 -------------------~~~~~~~~~~~~-~~v~~i~~~p~~~~l~~~s~d-~~i~i~~~~~~~~~~~~~~~~~~~~~  142 (371)
T d1k8kc_          84 -------------------TWKPTLVILRIN-RAARCVRWAPNEKKFAVGSGS-RVISICYFEQENDWWVCKHIKKPIRS  142 (371)
T ss_dssp             -------------------EEEEEEECCCCS-SCEEEEEECTTSSEEEEEETT-SSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             -------------------cccccccccccc-ccccccccccccccceeeccc-Ccceeeeeeccccccccccccccccc
Confidence                               122233355565 689999999999999999999 699999987765432     123567


Q ss_pred             CeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-------------------eccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------------EPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      .|.+++|+|++++|++++.|++|++||......                   .....|...|.+++|+|+|++|++++.+
T Consensus       143 ~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  222 (371)
T d1k8kc_         143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  222 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC
Confidence            899999999999999999999999999875431                   1233677889999999999999988743


Q ss_pred             CeEEEEEEeCCCCC--CCceeeccccccee
Q 018806          317 SLTLGSIHFASKPP--SLDAHLLPVDLPDI  344 (350)
Q Consensus       317 ~~~~~~~~~~~~~~--~~~~~~~~v~~~~~  344 (350)
                       ..+..|++.....  .+..|..||....+
T Consensus       223 -~~i~iwd~~~~~~~~~~~~~~~~v~s~~f  251 (371)
T d1k8kc_         223 -STVCLADADKKMAVATLASETLPLLAVTF  251 (371)
T ss_dssp             -TEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred             -CcceEEeeecccceeeeecccccceeeee
Confidence             3455555544332  55567777765544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-29  Score=218.62  Aligned_cols=222  Identities=15%  Similarity=0.142  Sum_probs=174.7

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|.+++|+|+|++|++++.|+.|++||+...+......+ ..|...+..++|+|++..+++++.++.+++|++.....
T Consensus        97 ~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~  175 (337)
T d1gxra_          97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL  175 (337)
T ss_dssp             TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCcEEEEEEcCCCCEEEEeeccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            34699999999999999999999999999875444443443 47888999999999988888888899999999985432


Q ss_pred             CceeecccccccceecCCC----------CCceEEeeec-------cCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          179 AASVRSGAASFLGALSRGP----------GTRWTLVDFL-------RSQNGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-------~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                      ... .......+..+.+..          ++...+++.-       ..+ ...|.+++|+|+++.|++++.+ |.+++||
T Consensus       176 ~~~-~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d-~~i~i~d  252 (337)
T d1gxra_         176 VRQ-FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TSQIFSLGYCPTGEWLAVGMES-SNVEVLH  252 (337)
T ss_dssp             EEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECTTSSEEEEEETT-SCEEEEE
T ss_pred             ccc-ccccccccccccccccccccccccccccccccccccceeeccccc-ccceEEEEEcccccccceeccc-ccccccc
Confidence            222 222222222333322          3333333311       123 3689999999999999999999 6999999


Q ss_pred             CCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 018806          242 VAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTL  320 (350)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~  320 (350)
                      +++++......|...|.+++|+|+|++|++++.|+.|++||+.+++......|...|.+++|+|+|++|++++ ++.+.+
T Consensus       253 ~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~v  332 (337)
T d1gxra_         253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV  332 (337)
T ss_dssp             TTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             ccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            9999888778889999999999999999999999999999999999877778889999999999999999987 566677


Q ss_pred             EEEE
Q 018806          321 GSIH  324 (350)
Q Consensus       321 ~~~~  324 (350)
                      |++-
T Consensus       333 Wdl~  336 (337)
T d1gxra_         333 YEVI  336 (337)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=218.42  Aligned_cols=243  Identities=14%  Similarity=0.115  Sum_probs=181.0

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCc--eeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  176 (350)
                      ...|++++|+|+|++||+|+ ||.|+|||+.......  ......+|.+.|.+++|+|+++.|++++.|+.|++||+...
T Consensus        51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~  129 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred             CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc
Confidence            45699999999999999987 8999999996533221  12223468899999999999999998999999999998743


Q ss_pred             CCCcee-ecccccccceecCC----------CCCceE--------EeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeE
Q 018806          177 GNAASV-RSGAASFLGALSRG----------PGTRWT--------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSF  237 (350)
Q Consensus       177 ~~~~~~-~~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i  237 (350)
                      ...... ..........+.+.          .+..+.        +.....+|. ..+.+++|++++..+++++.+ |.+
T Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-~~v~~l~~s~~~~~~~~~~~d-~~v  207 (337)
T d1gxra_         130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-DGASCIDISNDGTKLWTGGLD-NTV  207 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccc
Confidence            321111 11111112222222          222222        233445565 689999999999999999999 699


Q ss_pred             EEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ++||+++++......+...+.+++|+|++++|++++.|+.+++||+++++......|...|++++|+|+|++|++++.+ 
T Consensus       208 ~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D-  286 (337)
T d1gxra_         208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-  286 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred             cccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCC-
Confidence            9999999988877888999999999999999999999999999999999888888899999999999999999988743 


Q ss_pred             eEEEEEEeCCCCC-CCceeecccccceee
Q 018806          318 LTLGSIHFASKPP-SLDAHLLPVDLPDIV  345 (350)
Q Consensus       318 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~  345 (350)
                      ..+..|+...... ....|..+|....+.
T Consensus       287 g~i~iwd~~~~~~~~~~~~~~~v~~~~~s  315 (337)
T d1gxra_         287 NLLNAWRTPYGASIFQSKESSSVLSCDIS  315 (337)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEccCCCCEEEEEEe
Confidence            3455565544332 223455666554443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.3e-29  Score=216.22  Aligned_cols=200  Identities=18%  Similarity=0.146  Sum_probs=160.7

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC--CcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~  176 (350)
                      ...|++++|+|+|++||+|+.||+|+||++....... ......|...|.+++|+|+++.+++++.+  ..++||+++..
T Consensus        58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~  136 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG  136 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred             CCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-ccccccccCccccccccccccccccccccccccccccccccc
Confidence            4569999999999999999999999999997533322 23335789999999999998888888764  67999999854


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCe-EEEEEeCCCeEEEEeCCCCCceeee-ecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTPIR-RGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~~~d~g~i~iwd~~~~~~~~~~-~~~  254 (350)
                      ...                         ..+.+|. ..|.+++|+|++++ |++++.| |.|++||+++++..... .|.
T Consensus       137 ~~~-------------------------~~l~~h~-~~v~~v~~~~~~~~~l~sgs~d-~~i~i~d~~~~~~~~~~~~~~  189 (311)
T d1nr0a1         137 TSN-------------------------GNLTGQA-RAMNSVDFKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHT  189 (311)
T ss_dssp             CBC-------------------------BCCCCCS-SCEEEEEECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCS
T ss_pred             ccc-------------------------ccccccc-cccccccccccceeeecccccc-ccccccccccccccccccccc
Confidence            332                         2355665 68999999999986 6677778 79999999988766544 567


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec--------cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..|.++.|+|++++|++++.|+.|++||..+++...        ..+|...|++++|+|+|++|++++.+ ..+..|++.
T Consensus       190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D-g~v~iwd~~  268 (311)
T d1nr0a1         190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-KTIKIWNVA  268 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETT
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCC-CeEEEEECC
Confidence            899999999999999999999999999999876521        23678899999999999999988732 245555554


Q ss_pred             C
Q 018806          327 S  327 (350)
Q Consensus       327 ~  327 (350)
                      .
T Consensus       269 t  269 (311)
T d1nr0a1         269 T  269 (311)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.8e-29  Score=213.76  Aligned_cols=219  Identities=9%  Similarity=0.120  Sum_probs=163.9

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc-
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA-  180 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-  180 (350)
                      |++++|+|+|++||+|+.||.|++||+..  ++....+...|...|++++|+|++ .+++++.|+.+++|+........ 
T Consensus        15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~~~~~~~~~~   91 (299)
T d1nr0a2          15 ITALSSSADGKTLFSADAEGHINSWDIST--GISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS   91 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT
T ss_pred             cEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEcCCCCCcEEEEEeeccc-eeecccceeeEEEeccCCcccccc
Confidence            99999999999999999999999999954  666666655789999999999995 67888899999999987432111 


Q ss_pred             -eeecccccccceecCCCCCc---------eEEeee---ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc
Q 018806          181 -SVRSGAASFLGALSRGPGTR---------WTLVDF---LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  247 (350)
Q Consensus       181 -~~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~  247 (350)
                       ............+.+.+++.         ..++..   ........+.+++|+|++++|++++.+ |.|++||+++++.
T Consensus        92 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~~~d~~~~~~  170 (299)
T d1nr0a2          92 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD-SKVHVYKLSGASV  170 (299)
T ss_dssp             SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT-SEEEEEEEETTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence             11111111222233333332         222221   011112467899999999999999999 7999999988765


Q ss_pred             ee--eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee----ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 018806          248 TP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAF-AGSLTL  320 (350)
Q Consensus       248 ~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~  320 (350)
                      ..  ...|...|.+++|+|++++|++++.|+.|++||+.++...    .+..|...|++++|+|+|++|++++ ++.  +
T Consensus       171 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~--i  248 (299)
T d1nr0a2         171 SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS--V  248 (299)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC--E
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCE--E
Confidence            43  4467889999999999999999999999999999887652    3456889999999999999999887 444  4


Q ss_pred             EEEEeC
Q 018806          321 GSIHFA  326 (350)
Q Consensus       321 ~~~~~~  326 (350)
                      ..|++.
T Consensus       249 ~iwd~~  254 (299)
T d1nr0a2         249 IVWNMN  254 (299)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            444443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.2e-28  Score=215.57  Aligned_cols=203  Identities=14%  Similarity=0.130  Sum_probs=163.9

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      .+|++++|+|++++|++++.|++|+||++.......... ..+|...|.+++|+|+++.+++++.|+++++|++......
T Consensus        52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc-cccccccccccccccccccceeecccCcceeeeeeccccc
Confidence            349999999999999999999999999997533332222 3468889999999999999999999999999998844332


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCc------------
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------------  247 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~------------  247 (350)
                      .                     ........|. ..|.+++|+|++++|++++.| |+|++||......            
T Consensus       131 ~---------------------~~~~~~~~~~-~~v~~v~~~p~~~~l~s~s~D-~~v~v~~~~~~~~~~~~~~~~~~~~  187 (371)
T d1k8kc_         131 W---------------------VCKHIKKPIR-STVLSLDWHPNSVLLAAGSCD-FKCRIFSAYIKEVEERPAPTPWGSK  187 (371)
T ss_dssp             E---------------------EEEEECTTCC-SCEEEEEECTTSSEEEEEETT-SCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred             c---------------------cccccccccc-cccccccccccccceeccccC-cEEEEEeeccCcccccccccccccc
Confidence            1                     1223345554 689999999999999999999 6999999865421            


Q ss_pred             -------eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 018806          248 -------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  319 (350)
Q Consensus       248 -------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~  319 (350)
                             .....|...+.+++|+|+|++|++++.|+.|++||+.+++. ..+..|..+|.+++|+|+|++|++|.++...
T Consensus       188 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~  267 (371)
T d1k8kc_         188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPV  267 (371)
T ss_dssp             CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCE
T ss_pred             ccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceE
Confidence                   11234567899999999999999999999999999998877 4566788899999999999999877777777


Q ss_pred             EEEEEeC
Q 018806          320 LGSIHFA  326 (350)
Q Consensus       320 ~~~~~~~  326 (350)
                      ++.++..
T Consensus       268 ~~~~~~~  274 (371)
T d1k8kc_         268 LFTYDSA  274 (371)
T ss_dssp             EEEEETT
T ss_pred             EEEeeCC
Confidence            7777643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-28  Score=213.14  Aligned_cols=221  Identities=12%  Similarity=0.113  Sum_probs=155.8

Q ss_pred             CccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe-----------------cCCCCCCeeEEEEeeCCCeEE
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-----------------TSDSQRDVKVLEWRPNGGRSL  160 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~sp~~~~l~  160 (350)
                      |...|++++|||||++||+|+ |+.|+||++..  ++....+                 ...|...|++++|+|+++.++
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD--GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT--CCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecc--cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            456799999999999999986 89999999954  4333322                 124677899999999999999


Q ss_pred             EEecCCcEEEEecCCCCCCceee-------cccccccce-----------------------------------------
Q 018806          161 SVGCKGGICIWAPSYPGNAASVR-------SGAASFLGA-----------------------------------------  192 (350)
Q Consensus       161 ~~~~d~~v~iwd~~~~~~~~~~~-------~~~~~~~~~-----------------------------------------  192 (350)
                      +++.|+.|++||...........       .........                                         
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            99999999999987433221111       000000000                                         


Q ss_pred             --e-cCCCCCceEEee---------------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce------
Q 018806          193 --L-SRGPGTRWTLVD---------------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT------  248 (350)
Q Consensus       193 --~-~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~------  248 (350)
                        + ..+.++.+.++.               ...+|. ..|.+++|+|++++|++++.| |.|++||++++...      
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK-DSVYSVVFTRDGQSVVSGSLD-RSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCS-SCEEEEEECTTSSEEEEEETT-SEEEEEEC------------
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCC-CCEEEEEECCCCCEEEEEECC-CcEEEEeccCCccccccccc
Confidence              0 001112222221               112343 689999999999999999999 69999999865321      


Q ss_pred             -------eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEE------cCCCCEEEEEE
Q 018806          249 -------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATW------DPEGRMILLAF  314 (350)
Q Consensus       249 -------~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~------s~~g~~l~~~~  314 (350)
                             ....|...+.+++|+|+|++|++|+.||.|++||+++++. ..+.+|.+.|.++++      +|++++|++++
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence                   2234678899999999999999999999999999999987 457789999999874      67899999887


Q ss_pred             -CCCeEEEEE
Q 018806          315 -AGSLTLGSI  323 (350)
Q Consensus       315 -~~~~~~~~~  323 (350)
                       |+.+.+|.+
T Consensus       376 ~Dg~I~iW~~  385 (388)
T d1erja_         376 GDCKARIWKY  385 (388)
T ss_dssp             TTSEEEEEEE
T ss_pred             CCCEEEEEee
Confidence             444455444

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.4e-28  Score=204.79  Aligned_cols=216  Identities=15%  Similarity=0.194  Sum_probs=153.7

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .|++++|+|++++||+|+.||+|+|||+..  ++....+ .+|...|.+++|+|++..++++..++.+.+|+........
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~--~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR   95 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCEEEEE-eCCCCcEEEEeeeccccccccccccccccccccccccccc
Confidence            499999999999999999999999999964  5555555 5799999999999998888887778888888876333221


Q ss_pred             eeec-------ccccccce--ecCCCCCceEEe--------eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          181 SVRS-------GAASFLGA--LSRGPGTRWTLV--------DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       181 ~~~~-------~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                      .+..       ..+.+...  +..+.++...++        ..+.+|. ..+.+++|+|++++|++++.| |.|++|++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-~~v~~~~~~  173 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTLIASCSND-QTVRVWVVA  173 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETT
T ss_pred             ccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC-CcceeeecccCCCEEEEEeCC-CeEEEEeec
Confidence            1111       00111110  122222222222        2344454 466777777777777777666 466666655


Q ss_pred             CC--------------------------------------------------------------Ccee-eeecCCCeEEE
Q 018806          244 QG--------------------------------------------------------------LGTP-IRRGFGGLSIL  260 (350)
Q Consensus       244 ~~--------------------------------------------------------------~~~~-~~~~~~~v~~~  260 (350)
                      ++                                                              +... +..|...+.++
T Consensus       174 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~  253 (317)
T d1vyhc1         174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV  253 (317)
T ss_dssp             TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEE
Confidence            43                                                              2221 23456788999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          261 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       261 ~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      +|+|++++|++++.||.|++||+++++. ..+..|...|++++|+|++++|++++ |+.+.+|
T Consensus       254 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             EECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            9999999999999999999999999887 45678999999999999999999887 3334333

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=7.1e-27  Score=199.11  Aligned_cols=227  Identities=13%  Similarity=0.176  Sum_probs=171.5

Q ss_pred             CCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEE
Q 018806           90 HPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC  169 (350)
Q Consensus        90 ~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~  169 (350)
                      +|..+....+ .+..++++|+|+.||+++ ++.+.+|+++.  ......+ .+|...|++++|+|+|+.+++++.|++|+
T Consensus         9 ~~~~p~~~r~-~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~--~~~~~~~-~~H~~~v~~~~~sp~g~~latg~~dg~i~   83 (311)
T d1nr0a1           9 FPSLPRTARG-TAVVLGNTPAGDKIQYCN-GTSVYTVPVGS--LTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVR   83 (311)
T ss_dssp             ECCCCCCCTT-CCCCCEECTTSSEEEEEE-TTEEEEEETTC--SSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccCCCCCCCC-CeEEEEEcCCCCEEEEEe-CCEEEEEECCC--CceeEEE-cCCCCCEEEEEEeCCCCeEeccccCceEe
Confidence            3443333333 456789999999999975 56799999964  4444444 58999999999999999998899999999


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-CeEEEEeCCCCCce
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGT  248 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-g~i~iwd~~~~~~~  248 (350)
                      |||+......                       ....+..|. +.|.+++|+|++++|++++.+. ..+++|++++++..
T Consensus        84 iwd~~~~~~~-----------------------~~~~~~~~~-~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~  139 (311)
T d1nr0a1          84 IWDTTQTTHI-----------------------LKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN  139 (311)
T ss_dssp             EEESSSTTCC-----------------------EEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred             eeeeeccccc-----------------------ccccccccc-Ccccccccccccccccccccccccccccccccccccc
Confidence            9999854432                       122355665 6999999999999999887541 36999999988765


Q ss_pred             e-eeecCCCeEEEEEcCCCCE-EEEEecCCeEEEEeCCCCcee-ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEE
Q 018806          249 P-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  324 (350)
Q Consensus       249 ~-~~~~~~~v~~~~~sp~g~~-l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~  324 (350)
                      . +..|...|.+++|+|++++ |++|+.|+.|++||+++++.. ....|...|.+++|+|++++|++++ ++.+.+|.+.
T Consensus       140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~  219 (311)
T d1nr0a1         140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  219 (311)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccc
Confidence            4 4567789999999999986 788999999999999998874 4557889999999999999999887 4545555432


Q ss_pred             eC-------CCCCCCceeecccccceee
Q 018806          325 FA-------SKPPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       325 ~~-------~~~~~~~~~~~~v~~~~~~  345 (350)
                      ..       .......+|..+|....+.
T Consensus       220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s  247 (311)
T d1nr0a1         220 DGTKTGVFEDDSLKNVAHSGSVFGLTWS  247 (311)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccC
Confidence            11       1122444677777665554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.5e-25  Score=191.40  Aligned_cols=218  Identities=10%  Similarity=0.029  Sum_probs=134.2

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCe-EEEEecCCcEEEEecCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ..|++|+|+|++++||+|+.||+|+|||++............+|..+|.+++|+|++.. +++++.|+.|++|++.....
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence            34999999999999999999999999999754332222333369999999999998654 55666789999999984443


Q ss_pred             Cceeeccccccc----------ceecCCCCCceEEeee------------ccCCC-CCceeeEEECCCCCeEEEEEeCC-
Q 018806          179 AASVRSGAASFL----------GALSRGPGTRWTLVDF------------LRSQN-GEQITALSWGPDGRYLASASYES-  234 (350)
Q Consensus       179 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~------------~~~~~-~~~v~~~~~sp~g~~l~~~~~d~-  234 (350)
                      ............          ..+..+.+....+++.            ...+. ......+.+.+++..+++++.++ 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          92 FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence            322211111000          0011122222222210            11100 01122233344444444444441 


Q ss_pred             --------------------------------------------CeEEEEeCCCCCce-------e---------eeecC
Q 018806          235 --------------------------------------------SSFTIWDVAQGLGT-------P---------IRRGF  254 (350)
Q Consensus       235 --------------------------------------------g~i~iwd~~~~~~~-------~---------~~~~~  254 (350)
                                                                  |.+.+|+.......       .         ...+.
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence                                                        34444444322100       0         01223


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS  317 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  317 (350)
                      ..+.+++|+|++++|++|+.||.|++||+++++......+...+..++|+|+|++|+++++.+
T Consensus       252 ~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred             ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence            457899999999999999999999999999988755444445566788999999999987443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.4e-25  Score=188.49  Aligned_cols=218  Identities=9%  Similarity=0.101  Sum_probs=151.3

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (350)
                      ++.+|+||...                  |++++|+|    |++|+.||+|++||+..  +      ...|...|.+++|
T Consensus         5 ~i~~l~gH~~~------------------I~~l~~s~----l~sgs~Dg~v~~Wd~~~--~------~~~h~~~V~~~~~   54 (287)
T d1pgua2           5 VLKTISGHNKG------------------ITALTVNP----LISGSYDGRIMEWSSSS--M------HQDHSNLIVSLDN   54 (287)
T ss_dssp             EEEEECCCSSC------------------EEEEETTT----TEEEETTSCEEETTTTE--E------ECCCCSCEEEEEC
T ss_pred             eeEEECCCCCc------------------eEEEEECc----EEEEeCCCeEEEEECCC--C------CCCCCCCEEEEEe
Confidence            45677888655                  88899887    88999999999998742  1      2468888999998


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCCceeec-----------------------ccc---------------cccc-e-
Q 018806          153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRS-----------------------GAA---------------SFLG-A-  192 (350)
Q Consensus       153 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------------------~~~---------------~~~~-~-  192 (350)
                      +++ ..+++++.|+++++|++...........                       ...               .+.. . 
T Consensus        55 ~~~-~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (287)
T d1pgua2          55 SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV  133 (287)
T ss_dssp             CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEE
T ss_pred             cCC-CeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcce
Confidence            876 6778888889999998752211100000                       000               0000 0 


Q ss_pred             ecCCCC-CceEEee--------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee--eeecCCCeEEEE
Q 018806          193 LSRGPG-TRWTLVD--------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILK  261 (350)
Q Consensus       193 ~~~~~~-~~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~--~~~~~~~v~~~~  261 (350)
                      +..+.+ ..+.++.        .+...+...+++++|+|++++|++++.+ |.|++||+.+++...  ...|...|.+++
T Consensus       134 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~h~~~v~~~~  212 (287)
T d1pgua2         134 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM-GKILLYDLQSREVKTSRWAFRTSKINAIS  212 (287)
T ss_dssp             EEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEECCSCCCSSCEEEEE
T ss_pred             eeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc-ccccceeecccccccccccccccccceee
Confidence            111111 1222222        2233334689999999999999999999 799999999886543  446788899999


Q ss_pred             EcCC----------CCEEEEEecCCeEEEEeCCCCc-e-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 018806          262 WSPT----------GDYFFAAKFDGTFYLWETNTWT-S-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  323 (350)
Q Consensus       262 ~sp~----------g~~l~~~~~d~~v~iwd~~~~~-~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~  323 (350)
                      |+|+          +.+|++|+.|++|++||++++. . ..+.+|...|++++|+|+++ |++++ |+.+.+|.+
T Consensus       213 ~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             ecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            9875          4689999999999999997744 3 34568999999999999875 55555 555555543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.8e-24  Score=185.24  Aligned_cols=200  Identities=11%  Similarity=0.059  Sum_probs=150.4

Q ss_pred             cCeeEEEEec--CCCEEEEEECCCeEEEEEccCCCCCcee-----EecCCCCCCeeEEEEeeCCCeEEEEec--CCcEEE
Q 018806          100 VDLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDAC-----ILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICI  170 (350)
Q Consensus       100 ~~V~~v~~sp--~g~~la~~s~d~~i~iw~~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v~i  170 (350)
                      ..|++++|+|  +|++||+|+.||+|+|||+.........     .....|.++|.+++|+++++.+++++.  ++.+++
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence            4699999998  5689999999999999998642211111     112357889999999999988888776  478999


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCe-EEEEEeCCCeEEEEeCCCCCcee
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      |+.+...                         ....+.+|. ..|.+++|+|++.+ +++++.| |.+++||....+...
T Consensus       144 ~~~~~~~-------------------------~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d-~~v~~~d~~~~~~~~  196 (325)
T d1pgua1         144 ISWDSGN-------------------------SLGEVSGHS-QRINACHLKQSRPMRSMTVGDD-GSVVFYQGPPFKFSA  196 (325)
T ss_dssp             EETTTCC-------------------------EEEECCSCS-SCEEEEEECSSSSCEEEEEETT-TEEEEEETTTBEEEE
T ss_pred             Eeecccc-------------------------cceeeeecc-cccccccccccccceEEEeecc-cccccccccccccce
Confidence            9987432                         234466775 79999999999876 5567777 799999998776443


Q ss_pred             e----eecCCCeEEEEEcCC-CCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEc---CCCCEEEEEECCCeEE
Q 018806          250 I----RRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD---PEGRMILLAFAGSLTL  320 (350)
Q Consensus       250 ~----~~~~~~v~~~~~sp~-g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s---~~g~~l~~~~~~~~~~  320 (350)
                      .    ..+...|.+++|+|+ +.+|++++.|+.|++||+++++. ..+..|...+.++.|+   |+|++|++++.+ ..+
T Consensus       197 ~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D-~~i  275 (325)
T d1pgua1         197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-ATI  275 (325)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT-SEE
T ss_pred             ecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC-CeE
Confidence            2    234577999999997 68899999999999999999987 4556676666655555   689999988733 245


Q ss_pred             EEEEeCC
Q 018806          321 GSIHFAS  327 (350)
Q Consensus       321 ~~~~~~~  327 (350)
                      ..|++..
T Consensus       276 ~iwd~~~  282 (325)
T d1pgua1         276 RVWDVTT  282 (325)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            5555543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.2e-24  Score=181.46  Aligned_cols=230  Identities=13%  Similarity=0.166  Sum_probs=156.3

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ++|++|  ++++||+|+.||+|+|||+.+  ++.+..+ .+|.+.|++++|+|+ +.+++++.|++|++|+.........
T Consensus        16 itc~~~--~~~~l~tgs~Dg~i~vWd~~~--~~~~~~l-~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~   89 (355)
T d1nexb2          16 ITCLQF--EDNYVITGADDKMIRVYDSIN--KKFLLQL-SGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV   89 (355)
T ss_dssp             EEEEEE--ETTEEEEEETTTEEEEEETTT--TEEEEEE-ECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEEE--CCCEEEEEeCCCeEEEEECCC--CcEEEEE-ECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccc
Confidence            455554  678999999999999999953  6666655 589999999999987 7888999999999999874322111


Q ss_pred             eeccc---------ccccce--ecCCCC----------------------------------------------------
Q 018806          182 VRSGA---------ASFLGA--LSRGPG----------------------------------------------------  198 (350)
Q Consensus       182 ~~~~~---------~~~~~~--~~~~~~----------------------------------------------------  198 (350)
                      .....         ..+...  +..+.+                                                    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  169 (355)
T d1nexb2          90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG  169 (355)
T ss_dssp             ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE
T ss_pred             cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc
Confidence            10000         000000  000000                                                    


Q ss_pred             -----------CceEEe--------eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeE
Q 018806          199 -----------TRWTLV--------DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  258 (350)
Q Consensus       199 -----------~~~~~~--------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~  258 (350)
                                 .....+        ....++. ..+.++.|+|++..+++++.| |+|++||++++.... +..|...|.
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~h~~~v~  247 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHERKRCISASMD-TTIRIWDLENGELMYTLQGHTALVG  247 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTTTEEEEEETT-SCEEEEETTTCCEEEEECCCSSCCC
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccc-cccccccccccceeeeccccc-ceEEeeecccccccccccccccccc
Confidence                       011111        1223333 567889999999999999999 699999999987655 456788899


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEE-EEEcCCCCEEEEEECCCeEEEEEEeCCCC---CCCce
Q 018806          259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTG-ATWDPEGRMILLAFAGSLTLGSIHFASKP---PSLDA  334 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~~~~~~~~~~~~~~~---~~~~~  334 (350)
                      +++|+  +++|++++.||.|++||++++... +..|...+.. ..+++++++|++++++.  +..|++....   ..+.+
T Consensus       248 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~d~~--i~vwd~~tg~~~~~~~~~  322 (355)
T d1nexb2         248 LLRLS--DKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSGSENQ--FNIYNLRSGKLVHANILK  322 (355)
T ss_dssp             EEEEC--SSEEEEECTTSEEEEEETTTCCEE-EEEECTTCCCCCEEEECSSEEEEEETTE--EEEEETTTCCBCCSCTTT
T ss_pred             ccccc--cceeeeeeccccccccccccccee-cccccCCceEEEEEcCCCCEEEEEeCCE--EEEEECCCCCEEEEEecC
Confidence            99986  468999999999999999987654 3334444444 45788888888776654  5555554332   24567


Q ss_pred             eeccccccee
Q 018806          335 HLLPVDLPDI  344 (350)
Q Consensus       335 ~~~~v~~~~~  344 (350)
                      |..+|....+
T Consensus       323 ~~~~V~~v~~  332 (355)
T d1nexb2         323 DADQIWSVNF  332 (355)
T ss_dssp             TCSEEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            7777765444

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.1e-23  Score=178.49  Aligned_cols=223  Identities=14%  Similarity=0.178  Sum_probs=157.6

Q ss_pred             cCeeEEEEecCCCEEEEEECCCe-EEEEEccCCCCCceeEecCCC-CCCeeEEEEeeC--CCeEEEEecCCcEEEEecCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQ-VIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~-i~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ..+++++|+|+|+.||+++.+.. ++.|+...........+. +| ...|++++|+|+  +..+++++.||+|+|||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            35789999999999999876543 455554433334444443 55 568999999984  45666777799999999974


Q ss_pred             CCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeC-CCeEEEEeCCCCCcee-eeec
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTP-IRRG  253 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~g~i~iwd~~~~~~~~-~~~~  253 (350)
                      ......+...                 ....+..|. +.|.+++|++++++|++++.+ ++.+.+|+.++++... +..|
T Consensus        97 ~~~~~~~~~~-----------------~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h  158 (325)
T d1pgua1          97 DKESNSVEVN-----------------VKSEFQVLA-GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH  158 (325)
T ss_dssp             EGGGTEEEEE-----------------EEEEEECCS-SCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred             Ccceeeeecc-----------------ccccccccc-CcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec
Confidence            4433322211                 122344554 689999999999999887642 2489999999887654 4457


Q ss_pred             CCCeEEEEEcCCCCE-EEEEecCCeEEEEeCCCCcee----ccccCCCCeEEEEEcCC-CCEEEEEE-CCCeEEEEEEeC
Q 018806          254 FGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPE-GRMILLAF-AGSLTLGSIHFA  326 (350)
Q Consensus       254 ~~~v~~~~~sp~g~~-l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~s~~-g~~l~~~~-~~~~~~~~~~~~  326 (350)
                      ...+.+++|+|++.+ +++++.|+.+++||....+..    ....|...|.+++|+|+ +.+|++++ ++.  +..|++.
T Consensus       159 ~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~--i~iwd~~  236 (325)
T d1pgua1         159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK--ISCFDGK  236 (325)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC--EEEEETT
T ss_pred             ccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc--eeeeeec
Confidence            889999999999876 678899999999999887752    23467788999999997 57777666 444  4445554


Q ss_pred             CCC--CCCceeecccccce
Q 018806          327 SKP--PSLDAHLLPVDLPD  343 (350)
Q Consensus       327 ~~~--~~~~~~~~~v~~~~  343 (350)
                      ...  ..+.+|..++....
T Consensus       237 ~~~~~~~l~~~~~~v~~~~  255 (325)
T d1pgua1         237 SGEFLKYIEDDQEPVQGGI  255 (325)
T ss_dssp             TCCEEEECCBTTBCCCSCE
T ss_pred             cccccccccccccccccce
Confidence            333  35667777765443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.1e-23  Score=183.35  Aligned_cols=237  Identities=13%  Similarity=0.079  Sum_probs=153.0

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCc---eeEecCCCCCCeeEEEEe---e----CCCeEEEEecCCcE
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD---ACILTSDSQRDVKVLEWR---P----NGGRSLSVGCKGGI  168 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~s---p----~~~~l~~~~~d~~v  168 (350)
                      ..+|.++++++  ++|++++.|++|+|||....+...   .......|...+..+...   +    ++..+++++.|+.+
T Consensus        14 ~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v   91 (393)
T d1sq9a_          14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   91 (393)
T ss_dssp             SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             cCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcE
Confidence            34588888764  689999999999999975432211   111112344444433321   1    11234456669999


Q ss_pred             EEEecCCCCCCceeeccc-----------------cccc------c-eecCCCCCceEEeee------------------
Q 018806          169 CIWAPSYPGNAASVRSGA-----------------ASFL------G-ALSRGPGTRWTLVDF------------------  206 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~-----------------~~~~------~-~~~~~~~~~~~~~~~------------------  206 (350)
                      ++|++........+....                 ....      . -+..+.++...+++.                  
T Consensus        92 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  171 (393)
T d1sq9a_          92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL  171 (393)
T ss_dssp             EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred             EEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccce
Confidence            999986443322221100                 0000      0 012223333333321                  


Q ss_pred             --------ccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-------eeecCCCeEEEEEcCCCCEEEE
Q 018806          207 --------LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-------IRRGFGGLSILKWSPTGDYFFA  271 (350)
Q Consensus       207 --------~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-------~~~~~~~v~~~~~sp~g~~l~~  271 (350)
                              ...+ ...+.+++|+|++ +|++++.| |+|++||+.+++...       +..|..+|.+++|+|+|++|++
T Consensus       172 ~~~~~~~~~~~~-~~~~~~v~~s~dg-~lasgs~D-g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  248 (393)
T d1sq9a_         172 ELQGTVESPMTP-SQFATSVDISERG-LIATGFNN-GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  248 (393)
T ss_dssp             EEEEEECCSSSS-CCCCCEEEECTTS-EEEEECTT-SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             ecccceecccCC-CCcEEEEEECCCC-EEEEEeCC-CcEEEEeecccccccccccccccccccceEEEcccccccceeee
Confidence                    1111 2457899999997 88899999 799999999886542       2357789999999999999999


Q ss_pred             EecCC---eEEEEeCCCCceec--------------cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC--CCC
Q 018806          272 AKFDG---TFYLWETNTWTSEP--------------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSL  332 (350)
Q Consensus       272 ~~~d~---~v~iwd~~~~~~~~--------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~--~~~  332 (350)
                      |+.|+   .|++||+++++...              +.+|...|++++|+|||++|++++.+ ..+..|++....  ..+
T Consensus       249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D-~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-GKLRFWDVKTKERITTL  327 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred             ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC-CEEEEEECCCCCEEEEE
Confidence            99887   49999999887532              23688999999999999999988733 345555554432  367


Q ss_pred             ceeeccccc
Q 018806          333 DAHLLPVDL  341 (350)
Q Consensus       333 ~~~~~~v~~  341 (350)
                      .+|..+|..
T Consensus       328 ~gH~~~v~~  336 (393)
T d1sq9a_         328 NMHCDDIEI  336 (393)
T ss_dssp             ECCGGGCSS
T ss_pred             CCcCCcccC
Confidence            788877753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.3e-24  Score=187.18  Aligned_cols=203  Identities=12%  Similarity=0.142  Sum_probs=150.1

Q ss_pred             ccCeeEEEEecCC-----CEEEEEECCCeEEEEEccCCCCCc---------------eeEecCCCCCCeeEEEEeeCCCe
Q 018806           99 EVDLQGVSWHQHK-----HIVAFISGSTQVIVRDYEDSEGKD---------------ACILTSDSQRDVKVLEWRPNGGR  158 (350)
Q Consensus        99 ~~~V~~v~~sp~g-----~~la~~s~d~~i~iw~~~~~~~~~---------------~~~~~~~~~~~v~~~~~sp~~~~  158 (350)
                      ...+..++|.+++     .++++++.||.+++|++.......               .......+...+.+++|+|++ .
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~  197 (393)
T d1sq9a_         119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  197 (393)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             CCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-E
Confidence            3457788888764     688999999999999985321100               001112355678999999994 7


Q ss_pred             EEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--Ce
Q 018806          159 SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SS  236 (350)
Q Consensus       159 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--g~  236 (350)
                      +++++.|++|+|||+...+....+.                   ....+.+|. ..|.+++|+|+|++|++++.|+  +.
T Consensus       198 lasgs~Dg~i~iwd~~~~~~~~~~~-------------------~~~~l~~h~-~~V~~l~~spdg~~l~sgs~D~t~~~  257 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRPLYNFE-------------------SQHSMINNS-NSIRSVKFSPQGSLLAIAHDSNSFGC  257 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEE-------------------CCC---CCC-CCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred             EEEEeCCCcEEEEeecccccccccc-------------------ccccccccc-ceEEEcccccccceeeeecCCCCcce
Confidence            7777889999999998543322221                   123456676 7999999999999999999884  25


Q ss_pred             EEEEeCCCCCceee--------------eecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-ccccCCCCeE--
Q 018806          237 FTIWDVAQGLGTPI--------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVT--  299 (350)
Q Consensus       237 i~iwd~~~~~~~~~--------------~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~--  299 (350)
                      |++||+++++....              .+|...|++++|+|++++|++++.|++|+|||++++++. .+.+|...|.  
T Consensus       258 i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE  337 (393)
T ss_dssp             EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred             eeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCC
Confidence            99999998865432              257889999999999999999999999999999999884 5668877664  


Q ss_pred             --EEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          300 --GATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       300 --~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                        .++|+|+|..++.+     .++.+.++.
T Consensus       338 ~~~~~~~~~~~~~~~~-----~~~~~~~~~  362 (393)
T d1sq9a_         338 EDILAVDEHGDSLAEP-----GVFDVKFLK  362 (393)
T ss_dssp             GGCCCBCTTSCBCSSC-----CEEEEEEEC
T ss_pred             ccEEEECCCCCEEEEc-----ccceEEECc
Confidence              58899999988644     245555543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.4e-23  Score=175.19  Aligned_cols=224  Identities=16%  Similarity=0.164  Sum_probs=149.3

Q ss_pred             chhhhhhhhhhccccccCCCCcCCCCccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEE
Q 018806           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW  152 (350)
Q Consensus        73 ~~~~~~gh~~~~~~~~~~p~~~~~~~~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (350)
                      ...+|+||.+.                  |.+ +++++|++||+|+.||+|+|||+.+  ++....+ .+|...|.+++|
T Consensus         8 ~~~~l~GH~~~------------------V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~--~~~~~~~-~~h~~~V~~v~~   65 (342)
T d2ovrb2           8 SPKVLKGHDDH------------------VIT-CLQFCGNRIVSGSDDNTLKVWSAVT--GKCLRTL-VGHTGGVWSSQM   65 (342)
T ss_dssp             CCEEEECSTTS------------------CEE-EEEEETTEEEEEETTSCEEEEETTT--CCEEEEC-CCCSSCEEEEEE
T ss_pred             cCEEECCcCCc------------------eEE-EEEECCCEEEEEeCCCeEEEEECCC--CCEEEEE-eCCCCCEEEEEe
Confidence            34567888765                  543 3566899999999999999999954  6665555 589999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCCceeeccc-----------------------------cc---------------
Q 018806          153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA-----------------------------AS---------------  188 (350)
Q Consensus       153 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------------------------~~---------------  188 (350)
                      +|+  .+++++.|+.+++|+..............                             ..               
T Consensus        66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
T d2ovrb2          66 RDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  143 (342)
T ss_dssp             ETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             CCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee
Confidence            875  78888889999999976221110000000                             00               


Q ss_pred             -------------------------cc------------------ceecCCCCCceEEe--------eeccCCCCCceee
Q 018806          189 -------------------------FL------------------GALSRGPGTRWTLV--------DFLRSQNGEQITA  217 (350)
Q Consensus       189 -------------------------~~------------------~~~~~~~~~~~~~~--------~~~~~~~~~~v~~  217 (350)
                                               ..                  .-++.+.++.+.++        ..+.+|. ..+.+
T Consensus       144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~  222 (342)
T d2ovrb2         144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSG  222 (342)
T ss_dssp             EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEE
T ss_pred             ccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccc-cceeE
Confidence                                     00                  00000112222222        2344443 45666


Q ss_pred             EEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-c-
Q 018806          218 LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W-  291 (350)
Q Consensus       218 ~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~-  291 (350)
                      ++++  +++|++++.| |.|++||+...+......    |...+.++.+  +++++++++.||+|++||+++++... + 
T Consensus       223 ~~~~--~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         223 MELK--DNILVSGNAD-STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EEEE--TTEEEEEETT-SCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EecC--CCEEEEEcCC-CEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            6654  4688888888 699999988776554332    3345555555  56799999999999999999998732 2 


Q ss_pred             ----ccCCCCeEEEEEcCCCCEEEEEE-CC--CeEEEEEEeC
Q 018806          292 ----SSTSGFVTGATWDPEGRMILLAF-AG--SLTLGSIHFA  326 (350)
Q Consensus       292 ----~~~~~~v~~~~~s~~g~~l~~~~-~~--~~~~~~~~~~  326 (350)
                          ..|...|++++|+|++.+|++|+ ++  +..++.|++.
T Consensus       298 ~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             cccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence                25677899999999999999887 33  2567777764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.6e-22  Score=170.62  Aligned_cols=178  Identities=13%  Similarity=0.204  Sum_probs=138.3

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.++.|+|+++.+++++.|+.+++|++..  +.....+ ..|...+.+++|+|++..+++++.|+.+++|++......
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~  178 (317)
T d1vyhc1         102 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK  178 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccceeeeccCCCceEEeeccCcceeEeeccc--ceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence            3689999999999999999999999999954  5554544 478899999999999888888888999999999854433


Q ss_pred             ceeecc-------cccccce----------------------ecCCCCCceE--------EeeeccCCCCCceeeEEECC
Q 018806          180 ASVRSG-------AASFLGA----------------------LSRGPGTRWT--------LVDFLRSQNGEQITALSWGP  222 (350)
Q Consensus       180 ~~~~~~-------~~~~~~~----------------------~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~sp  222 (350)
                      ..+...       .+.+...                      ++.+.++.+.        +...+.+|. ..|.+++|+|
T Consensus       179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~  257 (317)
T d1vyhc1         179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHS  257 (317)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECS
T ss_pred             EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC-CCEEEEEECC
Confidence            222111       0000000                      1112223222        334566775 6999999999


Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEe
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  282 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd  282 (350)
                      ++++|++++.| |.|++||+++++... +..|...|.+++|+|++++|++++.||+|+|||
T Consensus       258 ~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         258 GGKFILSCADD-KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCEEEEETT-TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECC-CeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999 799999999987655 456889999999999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=3.7e-22  Score=168.25  Aligned_cols=220  Identities=13%  Similarity=0.177  Sum_probs=145.8

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  178 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  178 (350)
                      ...|++++|+|+|+++ +++.|+.+++|+...............+...+.+++|+|++. +++++.++.+++|+......
T Consensus        55 ~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~~~~~i~~~~~~~~~~  132 (299)
T d1nr0a2          55 ATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAACYKHIAIYSHGKLTE  132 (299)
T ss_dssp             SSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEEESSEEEEEETTEEEE
T ss_pred             CCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            3469999999999855 567899999999864322222222234667788999999854 55566677889998541110


Q ss_pred             C---ceeecccccccce--ecCCCCCceEEee---------eccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCC
Q 018806          179 A---ASVRSGAASFLGA--LSRGPGTRWTLVD---------FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  244 (350)
Q Consensus       179 ~---~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~  244 (350)
                      .   .......+.+...  +..+.++.+.+++         ....|. ..|.+++|+|++++|++++.+ |.|++||+.+
T Consensus       133 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~  210 (299)
T d1nr0a2         133 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP-AEITSVAFSNNGAFLVATDQS-RKVIPYSVAN  210 (299)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS-SCEEEEEECTTSSEEEEEETT-SCEEEEEGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-cccccccccc
Confidence            0   0000011111111  1222333333332         122344 689999999999999999999 6999999987


Q ss_pred             CCce----eeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec---ccc-CCCCeEEEEEcCCCCEEEEEE-C
Q 018806          245 GLGT----PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSS-TSGFVTGATWDPEGRMILLAF-A  315 (350)
Q Consensus       245 ~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~---~~~-~~~~v~~~~~s~~g~~l~~~~-~  315 (350)
                      +...    .+..|...|.+++|+|++++|++++.|+.|++||+++++...   ... +...+..+.| +++++|++++ |
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D  289 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD  289 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC
Confidence            6543    234567899999999999999999999999999999876532   223 3445666655 5678888887 4


Q ss_pred             CCeEEEEE
Q 018806          316 GSLTLGSI  323 (350)
Q Consensus       316 ~~~~~~~~  323 (350)
                      +.+.+|.+
T Consensus       290 ~~i~iWdl  297 (299)
T d1nr0a2         290 SNIKFWNV  297 (299)
T ss_dssp             SCEEEEEC
T ss_pred             CEEEEEec
Confidence            44555543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.3e-22  Score=171.97  Aligned_cols=201  Identities=15%  Similarity=0.264  Sum_probs=147.1

Q ss_pred             cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceE----------Ee-----
Q 018806          140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT----------LV-----  204 (350)
Q Consensus       140 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-----  204 (350)
                      ..+|.+.|++++|+|+++.|++++.||+|+|||+........+. .....+..+.+.+++.+.          .+     
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~  129 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe-cccccEEeeEeeccceeeeeecccceeeccccccc
Confidence            36899999999999999999999999999999998554433332 122222233332222111          00     


Q ss_pred             -------e-----------------------------------------eccCCCCCceeeEEECCCCCeEEEEEeCCCe
Q 018806          205 -------D-----------------------------------------FLRSQNGEQITALSWGPDGRYLASASYESSS  236 (350)
Q Consensus       205 -------~-----------------------------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~  236 (350)
                             .                                         ....+ ...+....+.+.+..+++++.| |.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d-~~  207 (340)
T d1tbga_         130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-TGDVMSLSLAPDTRLFVSGACD-AS  207 (340)
T ss_dssp             CSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETT-TE
T ss_pred             ccccccceeccccccccccccccccccccccccccccccccccccccccccccc-ceeEeeeccccccceeEEeecC-ce
Confidence                   0                                         01111 2456778888899999999999 69


Q ss_pred             EEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec---cccCCCCeEEEEEcCCCCEEEE
Q 018806          237 FTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILL  312 (350)
Q Consensus       237 i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~  312 (350)
                      |++||+++++... +..|...|.+++|+|++++|++++.|+.|++||++..+...   ...+...+.+++|+|+|++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE
Confidence            9999999987765 45578899999999999999999999999999999887643   3356678999999999999998


Q ss_pred             EE-CCCeEEEEEEeCCC--CCCCceeecccccceee
Q 018806          313 AF-AGSLTLGSIHFASK--PPSLDAHLLPVDLPDIV  345 (350)
Q Consensus       313 ~~-~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~  345 (350)
                      ++ ++.  +..|++...  ...+.+|..+|....+.
T Consensus       288 g~~dg~--i~iwd~~~~~~~~~~~~H~~~V~~l~~s  321 (340)
T d1tbga_         288 GYDDFN--CNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             EETTSC--EEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EECCCE--EEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            87 444  444554433  33677898888776665

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=4.7e-22  Score=171.58  Aligned_cols=179  Identities=9%  Similarity=0.096  Sum_probs=145.5

Q ss_pred             eEEEEec-CCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC--CcEEEEecCCCCCC
Q 018806          103 QGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNA  179 (350)
Q Consensus       103 ~~v~~sp-~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~~~  179 (350)
                      ..-.||| ||+++|+++ +|.|++|+...  +. ...+  .|...|.+++|+|||+.|++++.+  ..+++||...+.  
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~--~~-~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSG--TY-VLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTS--SB-EEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCC--Cc-EEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--
Confidence            3467999 999999876 57899999853  33 2333  688999999999999888888775  479999998432  


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeE
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS  258 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~  258 (350)
                                              ...+..|. ..+.+++|+|+|++|++++.+ +.+++|++.+++..... .+...+.
T Consensus        78 ------------------------~~~~~~~~-~~v~~~~~spdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  131 (360)
T d1k32a3          78 ------------------------AEKFEENL-GNVFAMGVDRNGKFAVVANDR-FEIMTVDLETGKPTVIERSREAMIT  131 (360)
T ss_dssp             ------------------------EEECCCCC-CSEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             ------------------------EEEeeCCC-ceEEeeeecccccccceeccc-cccccccccccceeeeeeccccccc
Confidence                                    12244454 789999999999999999999 59999999998876544 4667889


Q ss_pred             EEEEcCCCCEEEEEe----------cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          259 ILKWSPTGDYFFAAK----------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       259 ~~~~sp~g~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      +++|+|+|++|+.+.          .++.+++||+.+++...+..+...+..++|+|||++|++++.
T Consensus       132 ~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             chhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeC
Confidence            999999999998654          234699999999988888888888999999999999998873

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-21  Score=160.27  Aligned_cols=200  Identities=13%  Similarity=0.145  Sum_probs=135.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..|+|++  +||++||+|+.||+|+|||+..  ++....+ .+|.+.|.+++|  +++.+++++.|+.+++|++......
T Consensus        16 ~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~--~~~~~~l-~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          16 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKNT--LECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             CCEEEEE--CCSSEEEEEESSSCEEEEESSS--CCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCEEEEE--EcCCEEEEEeCCCeEEEEECCC--CcEEEEE-ecCCCCEeeeec--ccceeeccccccccccccccccccc
Confidence            3588765  5899999999999999999954  6665655 589999999887  4578888888999999998743321


Q ss_pred             ceeeccccc------------------------------------------c--------cceecCCCCCceEE------
Q 018806          180 ASVRSGAAS------------------------------------------F--------LGALSRGPGTRWTL------  203 (350)
Q Consensus       180 ~~~~~~~~~------------------------------------------~--------~~~~~~~~~~~~~~------  203 (350)
                      .........                                          .        ...+..+.++....      
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2          89 NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             EEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC
T ss_pred             ccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCC
Confidence            111100000                                          0        00011111222222      


Q ss_pred             --eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-cCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 018806          204 --VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYL  280 (350)
Q Consensus       204 --~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i  280 (350)
                        ...+.++. ..+..+.+  ++..+++++.| |+|++||+++........ +...+.  .+++++.+|++++.||.|++
T Consensus       169 ~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~i  242 (293)
T d1p22a2         169 EFVRTLNGHK-RGIACLQY--RDRLVVSGSSD-NTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKV  242 (293)
T ss_dssp             CEEEEEECCS-SCEEEEEE--ETTEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEE
T ss_pred             cEEEEEcccc-cccccccC--CCCeEEEecCC-CEEEEEecccceeeeeecccceeee--eccccceEEEEEcCCCEEEE
Confidence              22334443 35555555  46789999999 699999999887765443 444454  45678889999999999999


Q ss_pred             EeCCCCc----------eeccccCCCCeEEEEEcCCCCEEEEEE
Q 018806          281 WETNTWT----------SEPWSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       281 wd~~~~~----------~~~~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      ||+.+..          ...+..|.+.|++++|+  +++|++++
T Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s  284 (293)
T d1p22a2         243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS  284 (293)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECC
T ss_pred             EECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEe
Confidence            9975432          13456899999999995  56788776

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=5.1e-21  Score=164.99  Aligned_cols=230  Identities=12%  Similarity=0.089  Sum_probs=149.9

Q ss_pred             CccCeeEEEEecCCCEEEEEECCC--eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCC
Q 018806           98 PEVDLQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  175 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  175 (350)
                      ++..|++++|||||++|++++.+.  .+++||.+.  +. ...+ ..|...|.+++|+|+|+.+++++.++.+++|++..
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--~~-~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GK-AEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT--CC-EEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC--Cc-EEEe-eCCCceEEeeeecccccccceeccccccccccccc
Confidence            455699999999999999877653  789999853  33 2333 47899999999999999999999999999999985


Q ss_pred             CCCCceeecccccccceecCCCCCceEE--------------------ee-------eccCCCCCceeeEEECCCCCeEE
Q 018806          176 PGNAASVRSGAASFLGALSRGPGTRWTL--------------------VD-------FLRSQNGEQITALSWGPDGRYLA  228 (350)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-------~~~~~~~~~v~~~~~sp~g~~l~  228 (350)
                      .... ............+++++++++..                    ++       .+..+. ..+..++|+|+|++|+
T Consensus       117 ~~~~-~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         117 GKPT-VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN-SHDYAPAFDADSKNLY  194 (360)
T ss_dssp             CCEE-EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS-SBEEEEEECTTSCEEE
T ss_pred             ccee-eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccc-cccccccccCCCCEEE
Confidence            4433 23333333334455555544321                    11       112222 4678899999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCce-------e-eee------------------------------------cCCCeEEEEEcC
Q 018806          229 SASYESSSFTIWDVAQGLGT-------P-IRR------------------------------------GFGGLSILKWSP  264 (350)
Q Consensus       229 ~~~~d~g~i~iwd~~~~~~~-------~-~~~------------------------------------~~~~v~~~~~sp  264 (350)
                      +++.+ +.+.+||.......       . +..                                    ..+....+...+
T Consensus       195 ~~s~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T d1k32a3         195 YLSYR-SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE  273 (360)
T ss_dssp             EEESC-CCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred             EEeCC-CceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence            99988 59999986543110       0 000                                    001122233333


Q ss_pred             CCC-------------EEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCCC-
Q 018806          265 TGD-------------YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-  330 (350)
Q Consensus       265 ~g~-------------~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~-  330 (350)
                      ++.             ++++++.++.|++||+.+++...+.   +.|.+++|||||++|++++.+ ..++.|++..... 
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~D-g~i~v~d~~~~~~~  349 (360)
T d1k32a3         274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKPEDE  349 (360)
T ss_dssp             SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCTTSC
T ss_pred             CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---CCcCEEEECCCCCEEEEEECC-CeEEEEECCCCCcc
Confidence            222             2344556789999999988765443   468999999999999988743 3566666654332 


Q ss_pred             -CCceeecc
Q 018806          331 -SLDAHLLP  338 (350)
Q Consensus       331 -~~~~~~~~  338 (350)
                       ++..+..|
T Consensus       350 ~~~~~d~~~  358 (360)
T d1k32a3         350 RTVETDKRP  358 (360)
T ss_dssp             EECCCCSSC
T ss_pred             eEEEecccc
Confidence             44444443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.7e-20  Score=159.49  Aligned_cols=187  Identities=17%  Similarity=0.169  Sum_probs=145.1

Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceee
Q 018806          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  183 (350)
Q Consensus       104 ~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  183 (350)
                      ...+.+++++++++..|+.+++||+..  ++..... .++...+.++.|+|++..+++++.|+.|++||+....      
T Consensus       164 v~~~~~~~~~~~~~~~d~~i~~~d~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------  234 (355)
T d1nexb2         164 VRTVSGHGNIVVSGSYDNTLIVWDVAQ--MKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------  234 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTT--TEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC------
T ss_pred             ccccccccceeeeecccceeeeeeccc--ccceeee-eccccccccccccccceeeecccccceEEeeeccccc------
Confidence            345667889999999999999999953  5444444 4677889999999999999999999999999998433      


Q ss_pred             cccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE-EEE
Q 018806          184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI-LKW  262 (350)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~-~~~  262 (350)
                                         ....+.+|. ..|.+++|++  ++|++++.| |+|++||++++.... ..|...+.+ ..+
T Consensus       235 -------------------~~~~~~~h~-~~v~~~~~~~--~~l~~~~~d-g~i~iwd~~~~~~~~-~~~~~~~~~~~~~  290 (355)
T d1nexb2         235 -------------------LMYTLQGHT-ALVGLLRLSD--KFLVSAAAD-GSIRGWDANDYSRKF-SYHHTNLSAITTF  290 (355)
T ss_dssp             -------------------EEEEECCCS-SCCCEEEECS--SEEEEECTT-SEEEEEETTTCCEEE-EEECTTCCCCCEE
T ss_pred             -------------------ccccccccc-cccccccccc--ceeeeeecc-cccccccccccceec-ccccCCceEEEEE
Confidence                               234466775 6899999974  689999999 799999999876543 344445444 456


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCcee--ccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEEe
Q 018806          263 SPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF  325 (350)
Q Consensus       263 sp~g~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~~~~~  325 (350)
                      ++++++|++| .|+.|++||+++++..  .+..|...|++++|+|+ .++++++ ++...++.|++
T Consensus       291 ~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         291 YVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             EECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEEC
T ss_pred             cCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEeC
Confidence            7788777666 4899999999999874  35678899999999986 3555555 66677888875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.4e-21  Score=169.16  Aligned_cols=166  Identities=15%  Similarity=0.158  Sum_probs=122.7

Q ss_pred             eeEEEEe-cCCCEEEEEECCCeEEEEEccCCCCCceeEe------cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806          102 LQGVSWH-QHKHIVAFISGSTQVIVRDYEDSEGKDACIL------TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       102 V~~v~~s-p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      ..++.++ +++++|++++.|+.|++|+...  +.....+      ..+|...|.+++|+|+++.+++++.|+.|++||+.
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeeccc--CccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence            3445555 4789999999999999999854  3333222      23578899999999999999999999999999998


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeec
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRG  253 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~  253 (350)
                      ............             ..........|. ..|.+++|+|++++|++++.| |+|++||+++++... +..|
T Consensus       285 ~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~sg~~d-g~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         285 NANNKSDSKTPN-------------SGTCEVTYIGHK-DFVLSVATTQNDEYILSGSKD-RGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             ---------------------------CEEEEEECCS-SCEEEEEECGGGCEEEEEETT-SEEEEEETTTCCEEEEEECC
T ss_pred             CCcccccccccc-------------ccceeeeccccc-ceEEEEEECCCCCEEEEEeCC-CEEEEEECCCCcEEEEEeCC
Confidence            544332221110             111233344554 689999999999999999999 799999999998765 5568


Q ss_pred             CCCeEEEEE------cCCCCEEEEEecCCeEEEEeCC
Q 018806          254 FGGLSILKW------SPTGDYFFAAKFDGTFYLWETN  284 (350)
Q Consensus       254 ~~~v~~~~~------sp~g~~l~~~~~d~~v~iwd~~  284 (350)
                      .+.|.++++      +|++++|++|+.||+|+||+++
T Consensus       350 ~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            889998874      6789999999999999999984

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.8e-20  Score=166.15  Aligned_cols=227  Identities=10%  Similarity=0.078  Sum_probs=148.1

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec--CCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      ..+.+++|||||++|++++.|+++++||+.+.+......+.  .+|...+.+++|+|||+++++++. ++.+.+||....
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            35899999999999999999999999999764433322222  235556777888899998877664 799999998855


Q ss_pred             CCCceeeccc-------cccc---ceecCCCCCceEE-----------ee---------eccCCCCCceeeEEECCCCCe
Q 018806          177 GNAASVRSGA-------ASFL---GALSRGPGTRWTL-----------VD---------FLRSQNGEQITALSWGPDGRY  226 (350)
Q Consensus       177 ~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~-----------~~---------~~~~~~~~~v~~~~~sp~g~~  226 (350)
                      ..........       ....   ..+..+.++....           ..         ....+ ...+..++|+|++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~  220 (426)
T d1hzua2         142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA-APFLADGGWDSSHRY  220 (426)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC-CSSEEEEEECTTSCE
T ss_pred             ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc-CCccEeeeECCCCcE
Confidence            4332222111       0000   1122222222111           11         01122 246778999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCCc-------------------------------------------------------eeee
Q 018806          227 LASASYESSSFTIWDVAQGLG-------------------------------------------------------TPIR  251 (350)
Q Consensus       227 l~~~~~d~g~i~iwd~~~~~~-------------------------------------------------------~~~~  251 (350)
                      ++.+..+...+.+++..+++.                                                       ..+.
T Consensus       221 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~  300 (426)
T d1hzua2         221 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  300 (426)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe
Confidence            888776555677777654411                                                       0122


Q ss_pred             ecCCCeEEEEEcCCCCEEEE-------EecCCeEEEEeCCCCcee-c---------cccCCCCeEEEEEcCCCCEEEEEE
Q 018806          252 RGFGGLSILKWSPTGDYFFA-------AKFDGTFYLWETNTWTSE-P---------WSSTSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       252 ~~~~~v~~~~~sp~g~~l~~-------~~~d~~v~iwd~~~~~~~-~---------~~~~~~~v~~~~~s~~g~~l~~~~  314 (350)
                      .|...+..++|+|||++|++       ++.+++|+|||+++++.. +         +..+...|.+++|||||++|++++
T Consensus       301 g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~  380 (426)
T d1hzua2         301 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  380 (426)
T ss_dssp             CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEE
T ss_pred             cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEE
Confidence            34456788999999999985       456789999999998752 1         224566799999999999887654


Q ss_pred             ----CCCeEEEEEEeCC
Q 018806          315 ----AGSLTLGSIHFAS  327 (350)
Q Consensus       315 ----~~~~~~~~~~~~~  327 (350)
                          +.+..+..|+...
T Consensus       381 ~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         381 WNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             CCCTTSCCEEEEEETTT
T ss_pred             ecCCCCCCeEEEEECCC
Confidence                2344566665443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=3.4e-17  Score=137.12  Aligned_cols=220  Identities=15%  Similarity=0.153  Sum_probs=157.5

Q ss_pred             CeeEEEEecCCCEEE-EEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la-~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+..++|+|||++|+ +++.++.|++||+.+  ++....+. .+ ..+..++|++++..+++.+. ++.+.+|+......
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVP-AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEE-CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCC--Cceeeeee-cc-ccccccccccccccccccccccceeeeccccccee
Confidence            478899999999885 555789999999954  55555553 33 45789999999888877766 58899999885544


Q ss_pred             CceeecccccccceecCCCCCc-----------eEE--------eeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEE
Q 018806          179 AASVRSGAASFLGALSRGPGTR-----------WTL--------VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI  239 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~--------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~i  239 (350)
                      ...+....  ....+.+.+++.           ...        ...+..+  ..+..++++|+++.+++++.+.+.+.+
T Consensus       109 ~~~~~~~~--~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (301)
T d1l0qa2         109 AGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISV  184 (301)
T ss_dssp             EEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeccccc--cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC--CCceEEEeeccccceeeeccccccccc
Confidence            43333221  111122222222           111        1222222  467889999999999988877668889


Q ss_pred             EeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec---CCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECC
Q 018806          240 WDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG  316 (350)
Q Consensus       240 wd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  316 (350)
                      |+...............+..++|+++++.++++..   ++.|++||+.+++..........+.+++|+|||++|++++..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             EETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred             ccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECC
Confidence            99887776666666777889999999998876543   468999999999886555556678999999999999877766


Q ss_pred             CeEEEEEEeCCC
Q 018806          317 SLTLGSIHFASK  328 (350)
Q Consensus       317 ~~~~~~~~~~~~  328 (350)
                      +..+..|++...
T Consensus       265 ~~~i~v~D~~t~  276 (301)
T d1l0qa2         265 CNTVSVIDTATN  276 (301)
T ss_dssp             TTEEEEEETTTT
T ss_pred             CCeEEEEECCCC
Confidence            667777776543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=9.6e-19  Score=146.15  Aligned_cols=153  Identities=15%  Similarity=0.197  Sum_probs=118.2

Q ss_pred             eeEEEEecCCCEEEEEECCC-eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          102 LQGVSWHQHKHIVAFISGST-QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ....++++++..+++++.++ .+++|++..  ..........|...+++++|+|++..+++++.|+.|++||+...... 
T Consensus       121 ~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-  197 (287)
T d1pgua2         121 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSD--LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-  197 (287)
T ss_dssp             SCEEEEEECSSEEEEEETTTSCEEEEETTE--EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred             ceeeeeeccCcceeeeccccceeeeeeccc--cceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc-
Confidence            34567788898998888765 799999843  33334444467889999999999988988889999999999733211 


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC----------CCeEEEEEeCCCeEEEEeCCCCC-cee
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD----------GRYLASASYESSSFTIWDVAQGL-GTP  249 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----------g~~l~~~~~d~g~i~iwd~~~~~-~~~  249 (350)
                                             ...+.+|. ..|.+++|+|+          +.+|++++.| |+|++||++.+. ...
T Consensus       198 -----------------------~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D-~~i~iw~~~~~~~~~~  252 (287)
T d1pgua2         198 -----------------------TSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLD-TNIFIYSVKRPMKIIK  252 (287)
T ss_dssp             -----------------------ECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETT-SCEEEEESSCTTCCEE
T ss_pred             -----------------------cccccccc-cccceeeecccccccccccCCCCeeEeecCC-CeEEEEECCCCCeEEE
Confidence                                   12245565 68999999875          4679999999 699999997744 333


Q ss_pred             -eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeC
Q 018806          250 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET  283 (350)
Q Consensus       250 -~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~  283 (350)
                       +..|...|.+++|+|++ .|++++.|+.|++|++
T Consensus       253 ~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 ALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence             33588999999999987 5888999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1e-17  Score=142.35  Aligned_cols=154  Identities=16%  Similarity=0.126  Sum_probs=116.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ......+++++.+|++++.||.|++||+..  ++..... ..|...+.++++++  +.+++++.|+.|++||+.......
T Consensus       177 ~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~--~~~~~~~-~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~  251 (342)
T d2ovrb2         177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVET--GNCIHTL-TGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQ  251 (342)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEETTT--CCEEEEE-CCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccccccCCCCEEEEEeCCCeEEEeeccc--ceeeeEe-cccccceeEEecCC--CEEEEEcCCCEEEEEecccccccc
Confidence            345566777899999999999999999954  5544444 57888898887764  588888889999999998443322


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee------ecC
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR------RGF  254 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~------~~~  254 (350)
                      .+.                      ....|. ..+.++.++  ++++++++.| |+|++||+++++.....      .|.
T Consensus       252 ~~~----------------------~~~~~~-~~~~~~~~~--~~~~~s~s~D-g~i~iwd~~tg~~i~~~~~~~~~~~~  305 (342)
T d2ovrb2         252 TLQ----------------------GPNKHQ-SAVTCLQFN--KNFVITSSDD-GTVKLWDLKTGEFIRNLVTLESGGSG  305 (342)
T ss_dssp             EEC----------------------STTSCS-SCEEEEEEC--SSEEEEEETT-SEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred             ccc----------------------ccceee-eceeecccC--CCeeEEEcCC-CEEEEEECCCCCEEEEEecccCCCCC
Confidence            211                      122232 456666665  5799999999 79999999999875432      245


Q ss_pred             CCeEEEEEcCCCCEEEEEecCCe----EEEEeCCC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDGT----FYLWETNT  285 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~~----v~iwd~~~  285 (350)
                      ..|.+++|+|++.+|++|+.||+    |++||++.
T Consensus       306 ~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            67999999999999999999885    99999864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.6e-17  Score=147.09  Aligned_cols=189  Identities=14%  Similarity=0.082  Sum_probs=139.5

Q ss_pred             EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccce
Q 018806          113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  192 (350)
Q Consensus       113 ~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  192 (350)
                      ++++.+.+|+|.|||..+  ++.+..+.. + ..+..++|||||+++++++.|+++++||+...+.....          
T Consensus        34 ~~v~~~d~g~v~v~D~~t--~~v~~~~~~-g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~----------   99 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGST--YEIKTVLDT-G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA----------   99 (432)
T ss_dssp             EEEEETTTTEEEEEETTT--CCEEEEEEC-S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE----------
T ss_pred             EEEEEcCCCEEEEEECCC--CcEEEEEeC-C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE----------
Confidence            457888999999999954  777677643 3 46999999999999988888999999999754322110          


Q ss_pred             ecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEE-EEEeCCCeEEEEeCCCCCceeeee------------cCCCeEE
Q 018806          193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVAQGLGTPIRR------------GFGGLSI  259 (350)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d~g~i~iwd~~~~~~~~~~~------------~~~~v~~  259 (350)
                                .+....+|. +.+.+..|+|||++|+ ++..+ ++|++||..+++......            .......
T Consensus       100 ----------~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~-~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
T d1qksa2         100 ----------EIKIGSEAR-SIETSKMEGWEDKYAIAGAYWP-PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  167 (432)
T ss_dssp             ----------EEECCSEEE-EEEECCSTTCTTTEEEEEEEET-TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             ----------EEecCCCCC-CeEEecccCCCCCEEEEEcCCC-CeEEEEeCccccceeeeccCCccccceeccCCCceeE
Confidence                      011122332 4667778899999875 45556 799999999987654322            2345667


Q ss_pred             EEEcCCCCEEE-EEecCCeEEEEeCCCCceec--cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          260 LKWSPTGDYFF-AAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       260 ~~~sp~g~~l~-~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      +.++|+|..++ +...++.|.+||..+.+...  ...+...+..++|+|||+++++++.+...+..++...
T Consensus       168 v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            89999998764 55668899999999877533  3356667899999999999999986666777776654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=2.3e-17  Score=140.83  Aligned_cols=215  Identities=9%  Similarity=-0.034  Sum_probs=137.6

Q ss_pred             EEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceee
Q 018806          105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR  183 (350)
Q Consensus       105 v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~  183 (350)
                      ++|++++++|++++.+++|.+||+.+  ++....+...+...+.+++|+|||+++++++. ++.|++||+........+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t--~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC--CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            46889999999999999999999954  66555554456777899999999988877665 6999999998655444333


Q ss_pred             cccc-----cccceecCCCCCceEE----------------------eeeccCC---------CCCceeeEEECCCCCeE
Q 018806          184 SGAA-----SFLGALSRGPGTRWTL----------------------VDFLRSQ---------NGEQITALSWGPDGRYL  227 (350)
Q Consensus       184 ~~~~-----~~~~~~~~~~~~~~~~----------------------~~~~~~~---------~~~~v~~~~~sp~g~~l  227 (350)
                      ....     .....+.+++++++..                      +....+.         ....+..+.++++++.+
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            2211     1123355555554321                      1111111         01123344455555443


Q ss_pred             EEEEeCCCeEEEEeCCC---------------------------------------------------------------
Q 018806          228 ASASYESSSFTIWDVAQ---------------------------------------------------------------  244 (350)
Q Consensus       228 ~~~~~d~g~i~iwd~~~---------------------------------------------------------------  244 (350)
                      +++    +.+.+|++.+                                                               
T Consensus       160 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         160 VAG----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             EES----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EeC----CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            321    1344444433                                                               


Q ss_pred             ----CCcee--eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCe
Q 018806          245 ----GLGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL  318 (350)
Q Consensus       245 ----~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~  318 (350)
                          +....  ...+...+..+.+++++.+++... ++.|++||..+++......+...+.+++|+|||++|++++.+ .
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d-~  313 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF-N  313 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS-S
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCC-C
Confidence                22211  122344566778888888777665 467999999999886666666789999999999999988633 3


Q ss_pred             EEEEEEeCC
Q 018806          319 TLGSIHFAS  327 (350)
Q Consensus       319 ~~~~~~~~~  327 (350)
                      .+..|+...
T Consensus       314 ~v~v~D~~t  322 (346)
T d1jmxb_         314 DLAVFNPDT  322 (346)
T ss_dssp             EEEEEETTT
T ss_pred             cEEEEECcc
Confidence            455565544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=2.7e-16  Score=133.48  Aligned_cols=206  Identities=14%  Similarity=0.046  Sum_probs=138.4

Q ss_pred             CEEEEEECCCeEEEEEccCCCCCceeEecCC-CCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccc--
Q 018806          112 HIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA--  187 (350)
Q Consensus       112 ~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~--  187 (350)
                      +++++++.|++|+|||+.+  ++....+... +...+.+++|+|||+++++++. ++.|.+||+...+....+.....  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s--~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCC--CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            5799999999999999954  5555555433 4456889999999888766654 79999999987655444433211  


Q ss_pred             --cccceecCCCCCceE------------------------------EeeeccCCCCCceeeEEECCCCCeEEEEEeCCC
Q 018806          188 --SFLGALSRGPGTRWT------------------------------LVDFLRSQNGEQITALSWGPDGRYLASASYESS  235 (350)
Q Consensus       188 --~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g  235 (350)
                        .....++++++++..                              ....+..  ...+..++|+|+|+++++++.   
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~---  154 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGLGR---  154 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEESS---
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc--cCCceEEEEcCCCCEEEEEcC---
Confidence              112234444444322                              1111222  246788999999999998754   


Q ss_pred             eEEEEeCCCCCcee------------------------------------------------------------------
Q 018806          236 SFTIWDVAQGLGTP------------------------------------------------------------------  249 (350)
Q Consensus       236 ~i~iwd~~~~~~~~------------------------------------------------------------------  249 (350)
                      .+.+||..+++...                                                                  
T Consensus       155 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence            45667765541110                                                                  


Q ss_pred             -eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          250 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       250 -~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                       ...+...+..+.++|++.+++.+  ++.|++||+++++......+...+.+++|+|||++|++++.+ ..+..|+...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~-~~i~v~D~~t  310 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL-GDLAAYDAET  310 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS-SEEEEEETTT
T ss_pred             EecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC-CcEEEEECCC
Confidence             11122345566778888877655  589999999999987666677789999999999999987633 3466666554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.8e-16  Score=133.47  Aligned_cols=228  Identities=13%  Similarity=0.103  Sum_probs=143.4

Q ss_pred             ccCeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806           99 EVDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      +..|.+++|||||++|++++ .|+.|++|+++.............+...+..++|+|||+++++++. ++.+.+|+....
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc
Confidence            34689999999999996665 4899999999754443322222235566788999999998888876 588999987743


Q ss_pred             CCCceeec-ccccccceecCCCCCceE-----------EeeeccC-------------CCCCceeeEEECCCCCeEEEEE
Q 018806          177 GNAASVRS-GAASFLGALSRGPGTRWT-----------LVDFLRS-------------QNGEQITALSWGPDGRYLASAS  231 (350)
Q Consensus       177 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~-------------~~~~~v~~~~~sp~g~~l~~~~  231 (350)
                      ........ ........+.+++++...           .+.....             ........++|++++..++...
T Consensus       116 ~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         116 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeec
Confidence            32222211 111112223334444322           2221110             0122446789999998888776


Q ss_pred             eCCCeEEEEeCCCCCce--e---ee------ecCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCce-e---ccccCC
Q 018806          232 YESSSFTIWDVAQGLGT--P---IR------RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTS-E---PWSSTS  295 (350)
Q Consensus       232 ~d~g~i~iwd~~~~~~~--~---~~------~~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~-~---~~~~~~  295 (350)
                      ...+...+|+.......  .   ..      ........+++++++++++.. ..++.+.+|++..... .   ......
T Consensus       196 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (333)
T d1ri6a_         196 ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE  275 (333)
T ss_dssp             TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred             cccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCC
Confidence            65568888876543221  1   11      122456778999999987655 5577999998876543 2   223445


Q ss_pred             CCeEEEEEcCCCCEEEEEECCC--eEEEEEEeC
Q 018806          296 GFVTGATWDPEGRMILLAFAGS--LTLGSIHFA  326 (350)
Q Consensus       296 ~~v~~~~~s~~g~~l~~~~~~~--~~~~~~~~~  326 (350)
                      ..+.+++|+|||++|++++..+  +.+|.++..
T Consensus       276 ~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         276 TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             SSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             CCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            6678999999999999887443  455555543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=3.9e-16  Score=138.01  Aligned_cols=210  Identities=9%  Similarity=-0.056  Sum_probs=140.0

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC--CCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  176 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~  176 (350)
                      ..+..++|||||++|++++.|+.+++||+.+.+......+..  +|.+.+.++.|+|||+++++++. ++++++||....
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence            358999999999999999999999999997644333333322  34556677778899988765555 799999999855


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceee--eecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--RRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~--~~~~  254 (350)
                      +....+.......               ....-........+.++|+|+.++.+..+.+.|.+||..+.+...+  ..+.
T Consensus       142 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g  206 (432)
T d1qksa2         142 EPKKIQSTRGMTY---------------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE  206 (432)
T ss_dssp             CEEEEEECCEECT---------------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred             cceeeeccCCccc---------------cceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc
Confidence            4433322210000               0000012356778999999998877766668999999988765443  3445


Q ss_pred             CCeEEEEEcCCCCEEEEEec-CCeEEEEeCCCCceeccc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          255 GGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      ..+..++|+|+|+++++++. ++.+.++|.++++.....      .+........+...+...+....++..+..|.
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~  283 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG  283 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecc
Confidence            67889999999998877765 568999999887764322      23334444555555555544444444444444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.71  E-value=3.9e-15  Score=124.31  Aligned_cols=180  Identities=16%  Similarity=0.148  Sum_probs=139.2

Q ss_pred             EEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceec
Q 018806          116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALS  194 (350)
Q Consensus       116 ~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  194 (350)
                      +.+.|++|.+||+.+  ++....+.  ....+..++|+|||+++++++. ++.|++||+.....                
T Consensus         7 ~~~~~~~v~v~D~~t--~~~~~~i~--~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~----------------   66 (301)
T d1l0qa2           7 ANSESDNISVIDVTS--NKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----------------   66 (301)
T ss_dssp             EETTTTEEEEEETTT--TEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----------------
T ss_pred             EECCCCEEEEEECCC--CeEEEEEE--CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce----------------
Confidence            456789999999954  55555553  3456889999999988876654 69999999984433                


Q ss_pred             CCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEE-EEe
Q 018806          195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAK  273 (350)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~  273 (350)
                               ...+..+  ..+..++|+++++.+++++.+++.+.+|+..+++......+.....+++|+|+|+.++ ++.
T Consensus        67 ---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          67 ---------IATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             ---------EEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET
T ss_pred             ---------eeeeecc--ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeec
Confidence                     2233333  3678999999999888776665799999999998777777778889999999999875 455


Q ss_pred             cCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          274 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       274 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      .++.+.+|+..+++......+...+..++++|+++.++++..+......+...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccc
Confidence            68899999999998876666667789999999999999887555454444443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=1.2e-15  Score=134.72  Aligned_cols=191  Identities=14%  Similarity=0.109  Sum_probs=136.7

Q ss_pred             EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccce
Q 018806          113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  192 (350)
Q Consensus       113 ~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  192 (350)
                      ++++++.||+|+|||+.+  ++.+..+. .| ..+..++|||||+++++++.|+++++||+...+.....          
T Consensus        34 ~~V~~~~dg~v~vwD~~t--~~~~~~l~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~----------   99 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDS--KKIVKVID-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA----------   99 (426)
T ss_dssp             EEEEETTTTEEEEEETTT--CSEEEEEE-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE----------
T ss_pred             EEEEEcCCCEEEEEECCC--CcEEEEEe-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE----------
Confidence            556777899999999954  67666664 33 46999999999999988888999999999855432111          


Q ss_pred             ecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee------------cCCCeEEE
Q 018806          193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------------GFGGLSIL  260 (350)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~------------~~~~v~~~  260 (350)
                                .+....+|. ..+.+++|+|||+++++++..++.+.+||..++.......            +.+....+
T Consensus       100 ----------~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (426)
T d1hzua2         100 ----------EIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  168 (426)
T ss_dssp             ----------EEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             ----------EEeCCCCCc-ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEE
Confidence                      012223343 4677888999999987666443699999999987654332            22345567


Q ss_pred             EEcCCCCEEEEEec-CCeEEEEeCCCCce--eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          261 KWSPTGDYFFAAKF-DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       261 ~~sp~g~~l~~~~~-d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      .+++++..++.... .+.+.+++......  .....+...+..++|+|+|++++++......+..++....
T Consensus       169 ~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         169 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             EECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence            77888877765543 45777777766554  2344677889999999999999999866667777766543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=7.4e-16  Score=130.37  Aligned_cols=165  Identities=8%  Similarity=0.028  Sum_probs=118.1

Q ss_pred             eEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCcee
Q 018806          137 CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT  216 (350)
Q Consensus       137 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (350)
                      ..+..+|...|++|+|+|+++.|++++.|++|+|||+........+                      ....+|. ..|.
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~----------------------~~~~~h~-~~V~   60 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL----------------------LQSLRYK-HPLL   60 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE----------------------EEEEECS-SCEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE----------------------EEecCCC-CCEE
Confidence            4455689999999999999999999999999999999754432221                      1123454 7999


Q ss_pred             eEEECCCC-CeEEEEEeCCCeEEEEeCCCCCceeeee-c-CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec---
Q 018806          217 ALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPIRR-G-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---  290 (350)
Q Consensus       217 ~~~~sp~g-~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~-~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~---  290 (350)
                      +++|+|++ ..|++++.| |+|++|++.......... + ........+.+++..+++++.++.+++||++.+....   
T Consensus        61 ~v~f~~~~~~~l~sg~~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          61 CCNFIDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEEEEESSSEEEEEEETT-SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             EEEEeCCCCCEEEEcccc-cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeee
Confidence            99999875 578888888 799999999877655433 2 2344556677788899999999999999987654311   


Q ss_pred             --cc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          291 --WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       291 --~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                        ..  ........+.+.+++..+++++.+. .+..|++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~  178 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS-QVQWFRLP  178 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEECSSEEEEEESTT-EEEEEESS
T ss_pred             cccccccccceeeeeeeeccCCceeeecCCC-cEEEEecc
Confidence              11  1223445667788888888887332 44455543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=1.9e-14  Score=121.89  Aligned_cols=181  Identities=8%  Similarity=0.010  Sum_probs=120.0

Q ss_pred             CeeEEEEecCCCEEE-EEECCCeEEEEEccCCCCCceeEecCC----CCCCeeEEEEeeCCCeEEEEec-----------
Q 018806          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSD----SQRDVKVLEWRPNGGRSLSVGC-----------  164 (350)
Q Consensus       101 ~V~~v~~sp~g~~la-~~s~d~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~-----------  164 (350)
                      .+.+++|+|||++|+ +++.++.|.+||+.+  ++....+...    +...+..++|+|+++.++++..           
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCC--CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            467899999999875 556789999999964  5555544321    1234668999999888877653           


Q ss_pred             -CCcEEEEecCCCCCCceeecccccccceecCCCCCce------------------------------------------
Q 018806          165 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW------------------------------------------  201 (350)
Q Consensus       165 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  201 (350)
                       +..+.+||.........+....  ....+.+++++++                                          
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEAPR--QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN  190 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCS--SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred             cccceeeccccCCeEEEeccccC--CceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeec
Confidence             3567778776432221111100  0000000000000                                          


Q ss_pred             --------E-----------------------Ee---------eeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          202 --------T-----------------------LV---------DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       202 --------~-----------------------~~---------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                              .                       .+         ..+..+ ...+..+.++|++.+++..  + +.|++||
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~-~~i~v~d  266 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA--Y-NVLESFD  266 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--E-SEEEEEE
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC-CcceEEEEecccceEEEEc--c-ccEEEEE
Confidence                    0                       00         001111 2355677888888887655  4 4899999


Q ss_pred             CCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          242 VAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      +.+++......+...+.+++|+|||++|++++.+++|++||.++++..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            999988877777788999999999999999999999999999998874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=4.7e-14  Score=119.41  Aligned_cols=188  Identities=11%  Similarity=0.083  Sum_probs=132.1

Q ss_pred             EEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccce
Q 018806          114 VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  192 (350)
Q Consensus       114 la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~  192 (350)
                      +++++.|++|++|+++.......... ..|.+.+..++|+|||+.|++++. ++.|++|++........+.         
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~---------   76 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA---------   76 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe---------
Confidence            45666899999999974322122222 357789999999999998877776 6999999998443322211         


Q ss_pred             ecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee---eeecCCCeEEEEEcCCCCEE
Q 018806          193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPTGDYF  269 (350)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~l  269 (350)
                                  .... . ...+..++|+|||++|++++.+++.+.+|+........   ...+...+.++.++|+++++
T Consensus        77 ------------~~~~-~-~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          77 ------------AESA-L-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             ------------EEEE-C-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             ------------eecc-c-CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence                        1111 1 24678899999999999998765799999887665433   23355678889999999998


Q ss_pred             EEEec-CCeEEEEeCCCCceec-------cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          270 FAAKF-DGTFYLWETNTWTSEP-------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       270 ~~~~~-d~~v~iwd~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                      ++++. +..|.+|+........       ..........++|++++.+++...........+..
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence            87764 5689999987654321       12344567889999999999887755444444443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-14  Score=117.71  Aligned_cols=146  Identities=18%  Similarity=0.297  Sum_probs=98.8

Q ss_pred             CCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE
Q 018806          141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  220 (350)
Q Consensus       141 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (350)
                      ..|...|++++  ++|++|++++.|++|+|||+...+                         +..++.+|. ..|++++|
T Consensus        12 ~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~-------------------------~~~~l~~H~-~~V~~v~~   63 (293)
T d1p22a2          12 SETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLE-------------------------CKRILTGHT-GSVLCLQY   63 (293)
T ss_dssp             CSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCC-------------------------EEEEECCCS-SCEEEEEC
T ss_pred             CCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCc-------------------------EEEEEecCC-CCEeeeec
Confidence            35778898865  477889999999999999997432                         345567776 68888876


Q ss_pred             CCCCCeEEEEEeCCCeEEEEeCCCCCcee--------------------------------------------eeecCCC
Q 018806          221 GPDGRYLASASYESSSFTIWDVAQGLGTP--------------------------------------------IRRGFGG  256 (350)
Q Consensus       221 sp~g~~l~~~~~d~g~i~iwd~~~~~~~~--------------------------------------------~~~~~~~  256 (350)
                        ++++|++++.| |.|++|++..+....                                            ...+...
T Consensus        64 --~~~~l~s~s~D-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          64 --DERVIITGSSD-STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             --CSSEEEEEETT-SCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             --ccceeeccccc-ccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc
Confidence              56788888888 699999887652111                                            0112223


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLG  321 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~  321 (350)
                      +..+.+  ....+++++.|+.|++||+++++. ..+..+...+..+.++  +.++++++ ++.+.+|
T Consensus       141 v~~~~~--~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~  203 (293)
T d1p22a2         141 VNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW  203 (293)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             ccccee--cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEE
Confidence            333333  344677788889999999988876 3455666677766665  45777666 4444333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=9.6e-14  Score=117.88  Aligned_cols=75  Identities=9%  Similarity=0.022  Sum_probs=65.4

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      ..+..+.+++++.++++...+  .|.+||..+++..........+.+++|+|||++|++++.|+.|++||.++++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         252 ELYFTGLRSPKDPNQIYGVLN--RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             SCEEEEEECSSCTTEEEEEES--EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             ceeEEEEEeCCCCEEEEecCC--eEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            466788889998888877654  899999999987776666778999999999999999999999999999998874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=8e-14  Score=119.21  Aligned_cols=225  Identities=10%  Similarity=-0.015  Sum_probs=144.4

Q ss_pred             eeEEEEecCCCEEEEEE----------CCCeEEEEEccCCCCCceeEecC--CC----CCCeeEEEEeeCCCeEEEEec-
Q 018806          102 LQGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTS--DS----QRDVKVLEWRPNGGRSLSVGC-  164 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s----------~d~~i~iw~~~~~~~~~~~~~~~--~~----~~~v~~~~~sp~~~~l~~~~~-  164 (350)
                      ...++|||||++|++++          .++.|++||..+  ++....+..  .+    ......++|+|+++.++++.. 
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  126 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  126 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC--CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence            34689999999888754          478899999965  444333321  11    223467899999988877654 


Q ss_pred             -CCcEEEEecCCCCCCceeecccc------cccceecCCCCCceEEee-------------eccCCCCCceeeEEECCCC
Q 018806          165 -KGGICIWAPSYPGNAASVRSGAA------SFLGALSRGPGTRWTLVD-------------FLRSQNGEQITALSWGPDG  224 (350)
Q Consensus       165 -d~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~sp~g  224 (350)
                       +..+.+|+.........+.....      .....+..+.+++...+.             .........+....+.+++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence             47889999985544433322111      111123333443322221             1111112345567888888


Q ss_pred             CeEEEEEeCCCeEEEEeCCCCCceeeee---c----------CCCeEEEEEcCCCCEEEEEecC----------CeEEEE
Q 018806          225 RYLASASYESSSFTIWDVAQGLGTPIRR---G----------FGGLSILKWSPTGDYFFAAKFD----------GTFYLW  281 (350)
Q Consensus       225 ~~l~~~~~d~g~i~iwd~~~~~~~~~~~---~----------~~~v~~~~~sp~g~~l~~~~~d----------~~v~iw  281 (350)
                      ..++.++.+ |.+++|++..+....+..   +          ......+++++++..++....+          +.|++|
T Consensus       207 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~  285 (355)
T d2bbkh_         207 GRLVWPTYT-GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  285 (355)
T ss_dssp             TEEEEEBTT-SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CeEEEecCC-CeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEE
Confidence            889888888 699999999876432211   1          1233458899999988766543          379999


Q ss_pred             eCCCCceeccccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEEEeCCCC
Q 018806          282 ETNTWTSEPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       282 d~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~~~  329 (350)
                      |..+++......+...+.+++|+|||+. |++++..+..+..|+.....
T Consensus       286 d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         286 DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             ETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             eCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            9999988655555567899999999985 45555656677777775443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.58  E-value=8.3e-13  Score=113.67  Aligned_cols=224  Identities=12%  Similarity=-0.068  Sum_probs=135.5

Q ss_pred             ccCeeEEEEecCCCEEEEEE-----CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec---------
Q 018806           99 EVDLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---------  164 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------  164 (350)
                      ..++.+++++|||+.+++..     ..+.+.+||..  +++.+..+. .+.  ...++|+|||++++++..         
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~--tg~~~~~~~-~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAG--SGSILGHVN-GGF--LPNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECC--CCCEEEEEe-CCC--CccEEEcCCCCEEEEEeecCCcccccc
Confidence            34688899999999987642     24567777764  466666553 332  347999999999888753         


Q ss_pred             -CCcEEEEecCCCCCCceeeccccc------ccceecCCCCCceE------------Eeee----ccCCCCCceeeEEEC
Q 018806          165 -KGGICIWAPSYPGNAASVRSGAAS------FLGALSRGPGTRWT------------LVDF----LRSQNGEQITALSWG  221 (350)
Q Consensus       165 -d~~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------------~~~~----~~~~~~~~v~~~~~s  221 (350)
                       ++.|.+||....+....+......      ....+.+.++++..            .+..    ...+. ....++.++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s  173 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-SSPTCYHIH  173 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-ccceeEEEe
Confidence             477999999866544333221110      01123333333322            1111    01111 345678888


Q ss_pred             CCCCeEE-EEEeCCCeEEEEeCCCCCceeee---------------------------ec--------------------
Q 018806          222 PDGRYLA-SASYESSSFTIWDVAQGLGTPIR---------------------------RG--------------------  253 (350)
Q Consensus       222 p~g~~l~-~~~~d~g~i~iwd~~~~~~~~~~---------------------------~~--------------------  253 (350)
                      |+|+.++ +.+.+ |.+.+|+...+......                           ..                    
T Consensus       174 ~~g~~~~v~~~~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  252 (373)
T d2madh_         174 PGAPSTFYLLCAQ-GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             cCCCcEEEEEcCC-CeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEee
Confidence            9887765 44455 68888887654211100                           00                    


Q ss_pred             -------------CCCeEEEEEcCCCCEEE----------EEecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEE
Q 018806          254 -------------FGGLSILKWSPTGDYFF----------AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMI  310 (350)
Q Consensus       254 -------------~~~v~~~~~sp~g~~l~----------~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l  310 (350)
                                   ......+++++++..++          ....++.+.+||..+++......+...+..++|+|||+.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~  332 (373)
T d2madh_         253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPD  332 (373)
T ss_pred             ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEE
Confidence                         00112345566665544          3344678999999999987766777889999999999965


Q ss_pred             E-EEECCCeEEEEEEeCCCC
Q 018806          311 L-LAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       311 ~-~~~~~~~~~~~~~~~~~~  329 (350)
                      + ++...+..+..|+.....
T Consensus       333 l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         333 LYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEEEeCCCCeEEEEECCCCC
Confidence            3 444555567777765443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.4e-11  Score=98.56  Aligned_cols=216  Identities=14%  Similarity=0.173  Sum_probs=137.0

Q ss_pred             CeeEEEEecCCCEEEEEECCC---eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGST---QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP  176 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~---~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~  176 (350)
                      .+.+.+|||||++||......   .+.+.+..  .+.. ..+. .+........|+|+|+.++..... +...++.....
T Consensus        40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          40 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAV-RQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETT--TCCE-EEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             ceeeeEECCCCCEEEEEEeeccCcceeeeecc--cCce-eEEe-eeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence            477899999999999876533   34445543  2333 3332 467788999999999988887763 44333333311


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC--eEEEEeCCCCCceeeeecC
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGF  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g--~i~iwd~~~~~~~~~~~~~  254 (350)
                      .....                       . .... ........++++++.++..+...|  .|.+.++..+....+....
T Consensus       116 ~~~~~-----------------------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~  170 (269)
T d2hqsa1         116 SGQIR-----------------------Q-VTDG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG  170 (269)
T ss_dssp             TCCEE-----------------------E-CCCC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred             cccce-----------------------e-eeec-cccccccccccccccceecccccCCceEeeeecccccceeeeccc
Confidence            11100                       0 1111 134456678888887776665434  5677777777666666666


Q ss_pred             CCeEEEEEcCCCCEEEEEecCC---eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEEEeCCCC
Q 018806          255 GGLSILKWSPTGDYFFAAKFDG---TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF--AGSLTLGSIHFASKP  329 (350)
Q Consensus       255 ~~v~~~~~sp~g~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~  329 (350)
                      .......|+|+|+.++..+.++   .+.+.+...+.. +............|||||++|++.+  ++...++.+++....
T Consensus       171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             ccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            7778899999999998776544   455556665554 3334556678899999999998876  444677888877654


Q ss_pred             C-CCceeecccccceeec
Q 018806          330 P-SLDAHLLPVDLPDIVS  346 (350)
Q Consensus       330 ~-~~~~~~~~v~~~~~~~  346 (350)
                      . .+......+..|.+++
T Consensus       250 ~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         250 KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEECCCSSSEEEEEEECC
T ss_pred             EEEEeCCCCcEEeEEeCC
Confidence            3 3333333344455554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=5e-12  Score=112.51  Aligned_cols=143  Identities=17%  Similarity=0.292  Sum_probs=108.1

Q ss_pred             eeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCe
Q 018806          147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY  226 (350)
Q Consensus       147 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  226 (350)
                      -..+.|.+++ .+++ ..++.+.+||+..+.....+...                    .+..+. ..|.++.|||||++
T Consensus        19 ~~~~~W~~d~-~~~~-~~~~~~~~~~~~t~~~~~~~~~~--------------------~~~~~~-~~i~~~~~SpDg~~   75 (470)
T d2bgra1          19 LYSLRWISDH-EYLY-KQENNILVFNAEYGNSSVFLENS--------------------TFDEFG-HSINDYSISPDGQF   75 (470)
T ss_dssp             CCCCEECSSS-EEEE-ESSSCEEEEETTTCCEEEEECTT--------------------TTTTSS-SCCCEEEECTTSSE
T ss_pred             ccCCEeCCCC-EEEE-EcCCcEEEEECCCCCEEEEEchh--------------------hhhhcc-CccceeEECCCCCE
Confidence            3468899985 4444 34688999999865543222211                    244443 57999999999999


Q ss_pred             EEEEEe---------CCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceecccc----
Q 018806          227 LASASY---------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----  293 (350)
Q Consensus       227 l~~~~~---------d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~----  293 (350)
                      |++++.         + |.+.+||+.+++...+..+...+..+.|||||+.||.. .++.+++|+..+++..++..    
T Consensus        76 i~~~~~~~~~~r~s~~-~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1          76 ILLEYNYVKQWRHSYT-ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             EEEEEEEEECSSSCEE-EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             EEEEECCcceeeeccC-ceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCC
Confidence            998754         3 57899999999887777888899999999999999986 47789999999887644321    


Q ss_pred             ---------------CCCCeEEEEEcCCCCEEEEEE
Q 018806          294 ---------------TSGFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       294 ---------------~~~~v~~~~~s~~g~~l~~~~  314 (350)
                                     ..+....+.|||||++|++..
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence                           123345688999999999986

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1.1e-11  Score=106.46  Aligned_cols=220  Identities=11%  Similarity=-0.069  Sum_probs=137.3

Q ss_pred             eEEEEecCCCEEEEEE----------CCCeEEEEEccCCCCCceeEecCC------CCCCeeEEEEeeCCCeEEEEec-C
Q 018806          103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC-K  165 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~-d  165 (350)
                      ..++|+|||+.|++++          .|+.|.+||..+  ++....+...      .......++|+|||++++++.. +
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t--~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC--CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence            3589999999998865          367799999854  5544443211      1223457999999999887765 5


Q ss_pred             CcEEEEecCCCCCCceeecccc------cccceecCCCCCceEEeee--------------ccCCCCCceeeEEECCCCC
Q 018806          166 GGICIWAPSYPGNAASVRSGAA------SFLGALSRGPGTRWTLVDF--------------LRSQNGEQITALSWGPDGR  225 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~~sp~g~  225 (350)
                      +.+.+||+...+....+.....      .....+..+.++....+..              ...+ ...+....+.+++.
T Consensus       146 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~  224 (368)
T d1mdah_         146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ-NCSSQAAQANYPGM  224 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS-CBCSCCEEETTTTE
T ss_pred             CeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc-ccceeecccccCcE
Confidence            9999999986554443322211      1112244455555443331              1112 23445677777776


Q ss_pred             eEEEEEeCCCeEEEEeCCCCCceeeee-------------cCCCeEEEEEcCCCCEEEEEecC---------CeEEEEeC
Q 018806          226 YLASASYESSSFTIWDVAQGLGTPIRR-------------GFGGLSILKWSPTGDYFFAAKFD---------GTFYLWET  283 (350)
Q Consensus       226 ~l~~~~~d~g~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~d---------~~v~iwd~  283 (350)
                      .+...  . |.+++++...+.......             .......+++++++..++....+         ..|++||.
T Consensus       225 ~~~~~--~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         225 LVWAV--A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             EEECB--S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             EEEec--C-CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence            65543  3 456677766554332211             01223458899999887655332         35999999


Q ss_pred             CCCceeccccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEEEeCCC
Q 018806          284 NTWTSEPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       284 ~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~~  328 (350)
                      .+++..........+.+++|+|||+. |+++...+..+..|+....
T Consensus       302 ~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             SSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             CCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            99988655555567899999999985 5555555667778876554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=1.7e-11  Score=108.98  Aligned_cols=140  Identities=17%  Similarity=0.232  Sum_probs=100.4

Q ss_pred             eEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEec----CCCCCCeeEEEEeeCCCeEEEEec---------CCcEE
Q 018806          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT----SDSQRDVKVLEWRPNGGRSLSVGC---------KGGIC  169 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~---------d~~v~  169 (350)
                      ..+.|.++++++.  ..++.+.+||+.+  ++....+.    ..|...|.++.|||||+.|+++..         ++.+.
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEY--GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTT--CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCC--CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            3578999998776  4688899999965  44433221    235578999999999998887753         36788


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      +||+..+. .                         ..+..+. ..+..+.|||||+.||... + +.+++|+..+++...
T Consensus        96 l~d~~~~~-~-------------------------~~l~~~~-~~~~~~~~SPDG~~ia~~~-~-~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          96 IYDLNKRQ-L-------------------------ITEERIP-NNTQWVTWSPVGHKLAYVW-N-NDIYVKIEPNLPSYR  146 (470)
T ss_dssp             EEETTTTE-E-------------------------CCSSCCC-TTEEEEEECSSTTCEEEEE-T-TEEEEESSTTSCCEE
T ss_pred             EEECCCCc-c-------------------------cccccCC-ccccccccccCcceeeEee-c-ccceEEECCCCceee
Confidence            99998432 1                         1233443 6889999999999999965 5 389999999887654


Q ss_pred             eeec-------------------CCCeEEEEEcCCCCEEEEEecC
Q 018806          250 IRRG-------------------FGGLSILKWSPTGDYFFAAKFD  275 (350)
Q Consensus       250 ~~~~-------------------~~~v~~~~~sp~g~~l~~~~~d  275 (350)
                      +...                   .+....+.|||||++|+....|
T Consensus       147 ~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            3321                   1234567899999999887644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=5.9e-11  Score=100.96  Aligned_cols=211  Identities=11%  Similarity=-0.039  Sum_probs=123.0

Q ss_pred             CCCCccCeeEEEEecCCCEEEEEE--CCCeEEEEEccCCCCCceeEecCCC------CCCeeEEEEeeCCCeEEEEecC-
Q 018806           95 HLLPEVDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGCK-  165 (350)
Q Consensus        95 ~~~~~~~V~~v~~sp~g~~la~~s--~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d-  165 (350)
                      ..........++|+|+|+++++++  .+..+.+|+...  ++....+....      ......+.++++++.++....+ 
T Consensus       101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~  178 (355)
T d2bbkh_         101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE  178 (355)
T ss_dssp             CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred             eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCC--CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC
Confidence            333344567789999999988875  356788898853  44333332111      1223456677776666555443 


Q ss_pred             CcEEEEecCCCCCCce--eecccccc-ccee-cCCCCCceEEee----------eccCCC---------CCceeeEEECC
Q 018806          166 GGICIWAPSYPGNAAS--VRSGAASF-LGAL-SRGPGTRWTLVD----------FLRSQN---------GEQITALSWGP  222 (350)
Q Consensus       166 ~~v~iwd~~~~~~~~~--~~~~~~~~-~~~~-~~~~~~~~~~~~----------~~~~~~---------~~~v~~~~~sp  222 (350)
                      +.+.+++.........  +....... ...+ ....++...++.          ....+.         ......+++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  258 (355)
T d2bbkh_         179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  258 (355)
T ss_dssp             SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             CeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC
Confidence            5566665543221111  11111000 0111 112222222221          111110         12334688999


Q ss_pred             CCCeEEEEEeCC---------CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCE--EEEEecCCeEEEEeCCCCceec-
Q 018806          223 DGRYLASASYES---------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDY--FFAAKFDGTFYLWETNTWTSEP-  290 (350)
Q Consensus       223 ~g~~l~~~~~d~---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~--l~~~~~d~~v~iwd~~~~~~~~-  290 (350)
                      ++..++....+.         ..|.+||..+++..........+.+++|+|||+.  ++++..|+.|++||+++++... 
T Consensus       259 d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~  338 (355)
T d2bbkh_         259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  338 (355)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE
Confidence            999888765542         2799999999987766556667889999999983  4566779999999999999854 


Q ss_pred             cccCCCCeEEEEEcCCC
Q 018806          291 WSSTSGFVTGATWDPEG  307 (350)
Q Consensus       291 ~~~~~~~v~~~~~s~~g  307 (350)
                      +..+......+.+..+|
T Consensus       339 i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         339 VNQLGHGPQVITTADMG  355 (355)
T ss_dssp             ECCCCSSCCEEECCCCC
T ss_pred             EeCcCCCccEEEeCCCC
Confidence            44555555666665544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.29  E-value=6.4e-10  Score=95.15  Aligned_cols=188  Identities=9%  Similarity=-0.073  Sum_probs=118.0

Q ss_pred             CeeEEEEecCCCEE-EEEECCCeEEEEEccCCCCCceeEecC-----CCCCCeeEEEEeeCCCeEEEEecCCcEEEEecC
Q 018806          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  174 (350)
Q Consensus       101 ~V~~v~~sp~g~~l-a~~s~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  174 (350)
                      .+.++.++|+|+.+ ++.+.|+.+.+|+...  +........     ........+.+.++ ..++..+.++.+.+|+..
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~  242 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG--GAAGAGLVGAMLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADIS  242 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCC--ceeeEEEeeeccccCccceeeeEEECCC-ceEEEecCCceEEEEEcC
Confidence            46788899999755 5678899999999864  222222111     11222344555555 456667778999999987


Q ss_pred             CCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEE----------EEEeCCCeEEEEeCCC
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA----------SASYESSSFTIWDVAQ  244 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~----------~~~~d~g~i~iwd~~~  244 (350)
                      ..... .+.........           ... . .........+++++++..++          ....+ +.+.+||..+
T Consensus       243 ~~~~~-~~~~~~~~~~~-----------~~~-~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~v~~~d~~t  307 (373)
T d2madh_         243 AAGAT-NKAPIDALSGG-----------RKA-D-TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA-KEVTSVTGLV  307 (373)
T ss_pred             CCeEE-EEEeeccccCc-----------EEe-e-eeccCcceeeEEecCCCeEEEecCCCceEEeecCC-CeEEEEECCC
Confidence            43211 11100000000           000 0 00012334455666655444          34445 4899999999


Q ss_pred             CCceeeeecCCCeEEEEEcCCCCE--EEEEecCCeEEEEeCCCCceec-cccCCCCeEEEEEcCC
Q 018806          245 GLGTPIRRGFGGLSILKWSPTGDY--FFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPE  306 (350)
Q Consensus       245 ~~~~~~~~~~~~v~~~~~sp~g~~--l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~  306 (350)
                      ++......+...+..++|+|||+.  +++++.|++|++||+.+++... +..+....+.+++..+
T Consensus       308 ~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         308 GQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            988877777788999999999985  3678889999999999999854 4456667777776554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.17  E-value=5.1e-10  Score=96.62  Aligned_cols=187  Identities=11%  Similarity=-0.040  Sum_probs=116.9

Q ss_pred             EEEEECCCeEEEEEccCCCCCceeEecC-----------------------------CCCCCeeEEEEeeCCCeEEEEec
Q 018806          114 VAFISGSTQVIVRDYEDSEGKDACILTS-----------------------------DSQRDVKVLEWRPNGGRSLSVGC  164 (350)
Q Consensus       114 la~~s~d~~i~iw~~~~~~~~~~~~~~~-----------------------------~~~~~v~~~~~sp~~~~l~~~~~  164 (350)
                      +++++.+|.|++|++.  +++.+..+..                             .|.........+|||+++++...
T Consensus        14 f~Sgg~sG~V~V~dlp--S~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVP--SMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEET--TTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCC--CCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            3455679999999984  3443333211                             12223444456799888877776


Q ss_pred             -CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEE--EEeCC-------
Q 018806          165 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS--ASYES-------  234 (350)
Q Consensus       165 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~--~~~d~-------  234 (350)
                       ++.|.++|+...+..                         +.+.-.....+..++|+|+|+.++.  .+.+.       
T Consensus        92 ~~~rVavIDl~t~k~~-------------------------~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          92 ANTRVARIRLDIMKTD-------------------------KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             TTTEEEEEETTTTEEE-------------------------EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             CCCEEEEEECCCCcEe-------------------------eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence             599999999843322                         2222222357899999999996433  33221       


Q ss_pred             ---------CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC------------------------------
Q 018806          235 ---------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------------------------------  275 (350)
Q Consensus       235 ---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------------------------------  275 (350)
                               ..+..+|..+.+......-.+....+.|+|+|+++++.+.+                              
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                     02345788777665544445678889999999999877643                              


Q ss_pred             -----------CeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          276 -----------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       276 -----------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                                 +.+.+++....+.............+.++|||+++++++..+..+..|++..
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence                       2333333333333322333344678999999999998886666677777643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=8.5e-09  Score=88.07  Aligned_cols=163  Identities=13%  Similarity=0.159  Sum_probs=106.9

Q ss_pred             CCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC
Q 018806          145 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  223 (350)
Q Consensus       145 ~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  223 (350)
                      ..+.++.|+|||++++++.. .+.|.+|+....+.......                     ............++|+|+
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---------------------~~~~~~g~gPr~i~f~pd  203 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---------------------VDAPDPGDHPRWVAMHPT  203 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---------------------EECSSTTCCEEEEEECTT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---------------------eeecCCCCceEEEEECCC
Confidence            35789999999988888766 37888888764332211110                     011111357889999999


Q ss_pred             CCeEEEEEeCCCeEEEEeCCCCCceeeee--------------------cCCCeEEEEEcCCCCEEEEEec-C-----Ce
Q 018806          224 GRYLASASYESSSFTIWDVAQGLGTPIRR--------------------GFGGLSILKWSPTGDYFFAAKF-D-----GT  277 (350)
Q Consensus       224 g~~l~~~~~d~g~i~iwd~~~~~~~~~~~--------------------~~~~v~~~~~sp~g~~l~~~~~-d-----~~  277 (350)
                      +++++.....+++|.+|++..+.......                    .......+.++|||++|+++.. +     ..
T Consensus       204 g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~  283 (365)
T d1jofa_         204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY  283 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred             CceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceE
Confidence            99998887766799999987764322111                    0113457899999999987643 2     24


Q ss_pred             EEEEeCCCCc-eec------cccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEEeCCC
Q 018806          278 FYLWETNTWT-SEP------WSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       278 v~iwd~~~~~-~~~------~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      |..|++.... ...      ..........++++| +|++|+++...+..+..+++...
T Consensus       284 i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            7777765432 211      112345567899998 89999999866666666666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=5.9e-09  Score=89.08  Aligned_cols=202  Identities=9%  Similarity=0.006  Sum_probs=121.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec---CCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~  177 (350)
                      .+.-|+|+|++++|+++.. +.+..|.++... ................+.++++++.++....   .+.+..+.+....
T Consensus        41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~-~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~  118 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPT-EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEB-TEEEEEEEEETT-EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC-CeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence            4567999999999987654 568888886432 2222222223345677888999765444332   3666666554222


Q ss_pred             CCceeecccccccceecCCCCCce-EEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-e---e-
Q 018806          178 NAASVRSGAASFLGALSRGPGTRW-TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I---R-  251 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~---~-  251 (350)
                      ....+...          ...... .............+.++.|+|||++++++......|.+|+........ .   . 
T Consensus       119 ~~~~~~~~----------~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~  188 (365)
T d1jofa_         119 GYGNVFSV----------SETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA  188 (365)
T ss_dssp             CEEEEEEE----------CTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred             CcceeEee----------eecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee
Confidence            11111100          000000 001111111123578999999999998887644489998865432221 1   1 


Q ss_pred             -ecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCceecc--------c------------cCCCCeEEEEEcCCCCE
Q 018806          252 -RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPW--------S------------STSGFVTGATWDPEGRM  309 (350)
Q Consensus       252 -~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~~~~~~--------~------------~~~~~v~~~~~s~~g~~  309 (350)
                       ........++|+|+|+++++.. .+++|.+|++..++....        .            ........+.++|||++
T Consensus       189 ~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence             1235688999999999986555 578999999977653211        0            11123567899999999


Q ss_pred             EEEEE
Q 018806          310 ILLAF  314 (350)
Q Consensus       310 l~~~~  314 (350)
                      |+++.
T Consensus       269 lyvsn  273 (365)
T d1jofa_         269 MFASS  273 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99885

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=4e-10  Score=96.55  Aligned_cols=206  Identities=9%  Similarity=0.009  Sum_probs=115.6

Q ss_pred             CCCcCCCCccCeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC-CeEEEEecCCcE
Q 018806           91 PDHVHLLPEVDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGI  168 (350)
Q Consensus        91 p~~~~~~~~~~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v  168 (350)
                      |.......+.....++|+|||++|+++. .++.+.+||+..  ++....+.. +....    +.|.+ ..+++.+.|+++
T Consensus       115 p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~--~~~~~~~~~-~~~~~----~~~~~~~~~v~~~~Dg~~  187 (368)
T d1mdah_         115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG--ASDDQLTKS-ASCFH----IHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT--TEEEEEEEC-SSCCC----CEEEETTEEECCCCTTSC
T ss_pred             CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC--CcEeEEeec-cCcce----EccCCCceEEEEcCCCCE
Confidence            3333334444556799999999998876 579999999964  444444422 22111    11222 333344446666


Q ss_pred             EEEecCCCCCCceeecc-------------cccccceecCCCCCc----------eEEeeeccCCC---------CCcee
Q 018806          169 CIWAPSYPGNAASVRSG-------------AASFLGALSRGPGTR----------WTLVDFLRSQN---------GEQIT  216 (350)
Q Consensus       169 ~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~---------~~~v~  216 (350)
                      .++++............             .............+.          ...+.....+.         .....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  267 (368)
T d1mdah_         188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             EEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCce
Confidence            66665533322111100             001111111111111          11111111110         11234


Q ss_pred             eEEECCCCCeEEEEEeCC--------CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCE-E-EEEecCCeEEEEeCCCC
Q 018806          217 ALSWGPDGRYLASASYES--------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDY-F-FAAKFDGTFYLWETNTW  286 (350)
Q Consensus       217 ~~~~sp~g~~l~~~~~d~--------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~-l-~~~~~d~~v~iwd~~~~  286 (350)
                      .++++|++..++....+.        ..|.+||..+++..........+..++|+|||+. + +++..++.|++||..++
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            688899988877654331        2699999999987665555667889999999974 3 56667899999999999


Q ss_pred             ceeccccCCCCeEEEEE
Q 018806          287 TSEPWSSTSGFVTGATW  303 (350)
Q Consensus       287 ~~~~~~~~~~~v~~~~~  303 (350)
                      +......-......+++
T Consensus       348 k~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         348 QDQSSVELDKGPESLSV  364 (368)
T ss_dssp             EEEEECCCCSCCCEEEC
T ss_pred             CEEEEEECCCCCCEEEE
Confidence            98654443334455554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.11  E-value=5.8e-09  Score=89.96  Aligned_cols=217  Identities=11%  Similarity=-0.025  Sum_probs=114.9

Q ss_pred             eeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEE-EecCCcEE----------
Q 018806          102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGIC----------  169 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~----------  169 (350)
                      ......+|||++|++.. .+..|.++|+++  .+....+...+...+..++|+|+|+..++ +..+..+.          
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t--~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDI--MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTT--TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCC--CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            45555689999997765 678999999964  55545554466778999999999876433 33333332          


Q ss_pred             --------EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCC--------CC---------ceeeEEECCCC
Q 018806          170 --------IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GE---------QITALSWGPDG  224 (350)
Q Consensus       170 --------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------~v~~~~~sp~g  224 (350)
                              .+|........++...  .....+.++++++|..........        ..         ....++++|+|
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             ccccceEEeecCccceeeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence                    2333322111111111  011123333333333222111100        00         00011223344


Q ss_pred             CeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEE-EecCCeEEEEeCCCCce---------eccc--
Q 018806          225 RYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---------EPWS--  292 (350)
Q Consensus       225 ~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~d~~v~iwd~~~~~~---------~~~~--  292 (350)
                      +++..++ + +.+.+++....+.............+.++|||+++++ +..+++|.+||+++.+.         ..+.  
T Consensus       230 k~~~v~~-~-~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         230 NFKTIGD-S-KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             CCBCCTT-C-CCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             CEEEeCC-C-CcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence            4333221 2 3555555554444444433445678999999998854 56789999999865321         0111  


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          293 -STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       293 -~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                       ...-.....+|+++|..+ ++..-+..+..|.+
T Consensus       308 ~~~glgplh~~fd~~g~~y-ts~~~ds~v~kw~~  340 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAY-TTLFIDSQVCKWNI  340 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEE-EEETTTTEEEEEEH
T ss_pred             cccccCcccceecCCceEE-EcccccceEEEecc
Confidence             112234566899998654 44444456667765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=5.5e-08  Score=78.87  Aligned_cols=176  Identities=19%  Similarity=0.289  Sum_probs=112.6

Q ss_pred             eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-C--cEEEEecCCCCCCceeecccccccceecCCCC
Q 018806          122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYPGNAASVRSGAASFLGALSRGPG  198 (350)
Q Consensus       122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (350)
                      .|.|.|.+   |.....+. .+...+.+.+|||||++|++.... +  .+.+.+..... ..                  
T Consensus        20 ~l~i~d~d---G~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~------------------   76 (269)
T d2hqsa1          20 ELRVSDYD---GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VR------------------   76 (269)
T ss_dssp             EEEEEETT---SCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EE------------------
T ss_pred             EEEEEcCC---CCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-ee------------------
Confidence            46666665   44444443 345678999999999999987764 3  34444443211 11                  


Q ss_pred             CceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeE--EEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEe-cC
Q 018806          199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF--TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FD  275 (350)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i--~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d  275 (350)
                             .+..+ ........|+|+|+.++......|..  ..+.....................++++++.++..+ .+
T Consensus        77 -------~~~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (269)
T d2hqsa1          77 -------QVASF-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA  148 (269)
T ss_dssp             -------EEECC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             -------EEeee-ecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceeccccc
Confidence                   11222 25778899999999999877654433  333333333334444555666778888888765544 34


Q ss_pred             C--eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEEEeCCC
Q 018806          276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASK  328 (350)
Q Consensus       276 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~~~~~~~~~~~  328 (350)
                      +  .|.+.++..+....+...........|+|+|+.++....  +...++..+....
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~  205 (269)
T d2hqsa1         149 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  205 (269)
T ss_dssp             SSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             CCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccc
Confidence            4  677778887777666667777888999999999998763  3345555554443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.08  E-value=7.9e-08  Score=80.03  Aligned_cols=214  Identities=9%  Similarity=0.053  Sum_probs=125.4

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCC----CeeEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR----DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  177 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  177 (350)
                      -..++|+++|+.|+++...+.+...+.+   +...........+    ..+.+++.++|..+++-.. +....|+.....
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~---g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~  148 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSM  148 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETT---SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTT
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCC---CcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCccccccccee
Confidence            5689999999988888877778787864   2222222111111    3577899999765554221 111111110000


Q ss_pred             CCceeecccccccce-ecCCCCCceEEeeeccCCCCCceeeEEECCCCC----eEEEEEeCCCeEEEEeCCCCCce---e
Q 018806          178 NAASVRSGAASFLGA-LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR----YLASASYESSSFTIWDVAQGLGT---P  249 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~----~l~~~~~d~g~i~iwd~~~~~~~---~  249 (350)
                      .         ...+. .....++.+....  . .- .....++|+|++.    .|+.+....+.|..||+......   .
T Consensus       149 ~---------~~~G~v~~~~~dg~~~~~~--~-~~-~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~  215 (314)
T d1pjxa_         149 Q---------EKFGSIYCFTTDGQMIQVD--T-AF-QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK  215 (314)
T ss_dssp             S---------SSCEEEEEECTTSCEEEEE--E-EE-SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE
T ss_pred             c---------cCCceEEEEeecCceeEee--C-Cc-ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee
Confidence            0         00000 0011111111111  1 11 2346789998764    45555444368999987643221   1


Q ss_pred             ee-e----cCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceec-cccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 018806          250 IR-R----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  323 (350)
Q Consensus       250 ~~-~----~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~  323 (350)
                      .. .    .......+++..+|++.++....+.|.+||.++++... +.......++++|.||++.|+++......++.+
T Consensus       216 ~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         216 VWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            11 1    12345689999999988877778999999998877643 334456789999999999888887766788888


Q ss_pred             EeCCCCCCC
Q 018806          324 HFASKPPSL  332 (350)
Q Consensus       324 ~~~~~~~~~  332 (350)
                      ++...-..+
T Consensus       296 ~~~~~G~~~  304 (314)
T d1pjxa_         296 EWQRNGKKQ  304 (314)
T ss_dssp             ECSSCBCCC
T ss_pred             ECCCCChhh
Confidence            876544333

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=4e-08  Score=81.43  Aligned_cols=199  Identities=12%  Similarity=0.046  Sum_probs=123.8

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ..+.+++|++||+++++...++.+..|+.....+................+++.+++..+++...++.+..++.......
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~  147 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  147 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcce
Confidence            36899999999999998888888888887654444333333345567899999999655554445677777776522111


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCce---eeeecCCC
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGG  256 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~---~~~~~~~~  256 (350)
                      .........               ....... ......++++  +..++.+....+.|+.++.......   ........
T Consensus       148 ~~~~~~~~~---------------~~~~~~~-~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  209 (302)
T d2p4oa1         148 IWLEHPMLA---------------RSNSESV-FPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN  209 (302)
T ss_dssp             EEEECGGGS---------------CSSTTCC-SCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC
T ss_pred             eEecCCccc---------------eeeccCc-cccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCC
Confidence            000000000               0000011 1234455554  4556655555479999988765322   22223455


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCce--eccccCCCCeEEEEE---cCCCCEEEEEECC
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATW---DPEGRMILLAFAG  316 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~---s~~g~~l~~~~~~  316 (350)
                      ...++++++|++.++...++.|..++......  ......-...++++|   ++|++.|+++..+
T Consensus       210 pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            67799999999878777889999998765432  223334456799999   7789999877643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.6e-08  Score=89.15  Aligned_cols=183  Identities=13%  Similarity=0.099  Sum_probs=113.1

Q ss_pred             EEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec---------CCcEEEEecCCC
Q 018806          106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---------KGGICIWAPSYP  176 (350)
Q Consensus       106 ~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~v~iwd~~~~  176 (350)
                      .|.+++.++.. ..+|.+.+|++.+.+...+.....-....+....||||++.++....         .+.+.++|+..+
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57788876643 56788999999754332211111113346788899999888777542         356788888743


Q ss_pred             CCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeecC--
Q 018806          177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~--  254 (350)
                      .. ..+..                      .... ...+....|||||+.||.....  .|.+.+..++....+....  
T Consensus       102 ~~-~~l~~----------------------~~~~-~~~l~~~~wSPDG~~iafv~~~--nl~~~~~~~~~~~~lt~~g~~  155 (465)
T d1xfda1         102 DP-QSLDP----------------------PEVS-NAKLQYAGWGPKGQQLIFIFEN--NIYYCAHVGKQAIRVVSTGKE  155 (465)
T ss_dssp             CC-EECCC----------------------TTCC-SCCCSBCCBCSSTTCEEEEETT--EEEEESSSSSCCEEEECCCBT
T ss_pred             ce-eeccC----------------------ccCC-ccccceeeeccCCceEEEEecc--eEEEEecCCCceEEEecccCc
Confidence            32 22111                      1111 2456678999999999998644  7999998877655444211  


Q ss_pred             CC-----------------eEEEEEcCCCCEEEEEecC-C---------------------------------eEEEEeC
Q 018806          255 GG-----------------LSILKWSPTGDYFFAAKFD-G---------------------------------TFYLWET  283 (350)
Q Consensus       255 ~~-----------------v~~~~~sp~g~~l~~~~~d-~---------------------------------~v~iwd~  283 (350)
                      ..                 -..+-|||||++||....| .                                 .+.++|+
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~  235 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec
Confidence            11                 1467799999999876422 2                                 2455566


Q ss_pred             CCCceec--c-----ccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          284 NTWTSEP--W-----SSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       284 ~~~~~~~--~-----~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      .++....  .     ......+..+.|+++++.++...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n  274 (465)
T d1xfda1         236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (465)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc
Confidence            5543311  1     112234678999999987776654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.3e-06  Score=72.71  Aligned_cols=224  Identities=9%  Similarity=0.072  Sum_probs=129.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC--CcEEEEecCCCC
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPG  177 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~  177 (350)
                      ..+..++|.++|++.++-...+.|.-|+.+.  +. ..............++++++|+.+++...+  ....++.+....
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g--~~-~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPET--KE-IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTT--CC-EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCC--Ce-EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3467899999999766655788887777642  22 222223455678899999997666554332  233344433221


Q ss_pred             -CCceeec-cc-ccccceecCCCCCceEEee-------------ecc--CCC-------CCceeeEEECCCCCeEEEEEe
Q 018806          178 -NAASVRS-GA-ASFLGALSRGPGTRWTLVD-------------FLR--SQN-------GEQITALSWGPDGRYLASASY  232 (350)
Q Consensus       178 -~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~-------------~~~--~~~-------~~~v~~~~~sp~g~~l~~~~~  232 (350)
                       ....+.. .. ......+...+++.+..-+             .+.  +..       -.....++|+|+++.|+.+..
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence             1111111 10 1111223333333221110             010  100       023456999999998776655


Q ss_pred             CCCeEEEEeCCCCC-cee-----ee---ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee-cc--c----cCCC
Q 018806          233 ESSSFTIWDVAQGL-GTP-----IR---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW--S----STSG  296 (350)
Q Consensus       233 d~g~i~iwd~~~~~-~~~-----~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~-~~--~----~~~~  296 (350)
                      ..+.|..|++.... ...     ..   ........+++.++|++.++....+.|.+||- .++.. .+  .    .+..
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence            44699999986432 111     01   11234668999999998888888999999996 46652 22  1    3344


Q ss_pred             CeEEEEEcCCCCEEEEEE-----CCCeEEEEEEeCC
Q 018806          297 FVTGATWDPEGRMILLAF-----AGSLTLGSIHFAS  327 (350)
Q Consensus       297 ~v~~~~~s~~g~~l~~~~-----~~~~~~~~~~~~~  327 (350)
                      .+++++|.+++..++++.     .....++.++...
T Consensus       276 ~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~  311 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA  311 (319)
T ss_dssp             BCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             eeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence            678999999888777664     2335677776643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=2.5e-07  Score=74.73  Aligned_cols=192  Identities=9%  Similarity=0.010  Sum_probs=119.2

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      ....++++++|+++++....+.+++++-  .+..  .............+++.+++..+++-.....+..++.....  .
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~--~~~~--~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~--~  131 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAG--SNNQ--TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--Q  131 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTT--CSCC--EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS--C
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeee--ccce--eeeeeeeeeecccccccccceeEeeccccccccccccccce--e
Confidence            3577899999987766555555544432  2222  22222333567899999986554443334666666654211  1


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEE
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSI  259 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~  259 (350)
                      ...                      ...+  ......++++++|+.+++.... +.|..+|.......... ........
T Consensus       132 ~~~----------------------~~~~--~~~p~~i~~~~~g~~~v~~~~~-~~i~~~d~~~~~~~~~~~~~~~~p~g  186 (260)
T d1rwia_         132 TVL----------------------PFTG--LNDPDGVAVDNSGNVYVTDTDN-NRVVKLEAESNNQVVLPFTDITAPWG  186 (260)
T ss_dssp             EEC----------------------CCCS--CCSCCEEEECTTCCEEEEEGGG-TEEEEECTTTCCEEECCCSSCCSEEE
T ss_pred             eee----------------------eecc--cCCcceeeecCCCCEeeecccc-ccccccccccceeeeeeccccCCCcc
Confidence            110                      0111  1355789999999877776666 59999998766544332 33466789


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       260 ~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      +++.++|+++++....+.|..++.......... ..-.....|+++++|..++ +..+..+|..+.
T Consensus       187 i~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~v-ad~~~~rI~~i~  251 (260)
T d1rwia_         187 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV-ADRGNDRVVKLT  251 (260)
T ss_dssp             EEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEE-EEGGGTEEEEEC
T ss_pred             ceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEE-EECCCCEEEEEe
Confidence            999999998888777888988887655433222 2234678999999997554 543344555443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.3e-08  Score=85.21  Aligned_cols=216  Identities=13%  Similarity=0.154  Sum_probs=120.9

Q ss_pred             cCeeEEEEecCCCEEEEEEC---------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEE
Q 018806          100 VDLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  170 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i  170 (350)
                      ..+....|||||++|+....         .+.+.++|+...+...+... ......+....|||||+.++.+. ++.+.+
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~-~~~~~~l~~~~wSPDG~~iafv~-~~nl~~  138 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-EVSNAKLQYAGWGPKGQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-TCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc-cCCccccceeeeccCCceEEEEe-cceEEE
Confidence            45778899999999888643         46788899865332221111 12345677899999998887754 677888


Q ss_pred             EecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCe--------------
Q 018806          171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS--------------  236 (350)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~--------------  236 (350)
                      .+...+...+....+....+..    ....|.    ....-.+.-..+.|||||++||+...|...              
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~n----G~~d~v----yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~  210 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIYN----GLSDWL----YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY  210 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEE----EECCHH----HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred             EecCCCceEEEecccCcceeec----cccchh----hhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccc
Confidence            8776443332222221000000    000000    000000123567899999999987644322              


Q ss_pred             -------------------EEEEeCCCCCceeeee-------cCCCeEEEEEcCCCCEEEEEec-C---CeEEEEeCCCC
Q 018806          237 -------------------FTIWDVAQGLGTPIRR-------GFGGLSILKWSPTGDYFFAAKF-D---GTFYLWETNTW  286 (350)
Q Consensus       237 -------------------i~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~~~~-d---~~v~iwd~~~~  286 (350)
                                         +.++|+.++.......       ....+..+.|++++++++.... +   ..|.++|..++
T Consensus       211 p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg  290 (465)
T d1xfda1         211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (465)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             ceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC
Confidence                               3455554443221110       1123677899999987665432 2   26888999999


Q ss_pred             ceeccc--cCCCCe----EEEEEcCCCCEEEE--EE--CCCeEEEEEEe
Q 018806          287 TSEPWS--STSGFV----TGATWDPEGRMILL--AF--AGSLTLGSIHF  325 (350)
Q Consensus       287 ~~~~~~--~~~~~v----~~~~~s~~g~~l~~--~~--~~~~~~~~~~~  325 (350)
                      +...+.  ....+|    ....|++||+.++.  ..  ++...++.+.+
T Consensus       291 ~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~  339 (465)
T d1xfda1         291 VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITV  339 (465)
T ss_dssp             CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEE
T ss_pred             cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEe
Confidence            875433  122222    35689999986543  22  33345555544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=1.8e-07  Score=77.42  Aligned_cols=194  Identities=14%  Similarity=0.082  Sum_probs=123.5

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCc
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  180 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  180 (350)
                      .+..++++|||+++++...++.|..|+.+   +.... + ......+.+++|+++|+.+++...++.+.+++........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~---g~~~~-~-~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD---GNQQI-H-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT---CCEEE-E-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC---CCEEE-E-EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            47789999999999888888988777753   33222 2 2355789999999998766666566888877765322111


Q ss_pred             eeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-------
Q 018806          181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-------  253 (350)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-------  253 (350)
                      .                     ......  .......+++.++|+.+++.+.+ +.+..+|...+........       
T Consensus       104 ~---------------------~~~~~~--~~~~~n~i~~~~~g~~~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~  159 (302)
T d2p4oa1         104 E---------------------TLLTLP--DAIFLNGITPLSDTQYLTADSYR-GAIWLIDVVQPSGSIWLEHPMLARSN  159 (302)
T ss_dssp             E---------------------EEEECT--TCSCEEEEEESSSSEEEEEETTT-TEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             e---------------------eccccC--CccccceeEEccCCCEEeecccc-ccceeeeccCCcceeEecCCccceee
Confidence            1                     011111  12467899999999888777767 6999999887753322111       


Q ss_pred             ----CCCeEEEEEcCCCCEE-EEEecCCeEEEEeCCCCcee---ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEe
Q 018806          254 ----FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  325 (350)
Q Consensus       254 ----~~~v~~~~~sp~g~~l-~~~~~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~  325 (350)
                          ......+.++  +..+ ++.+..+.|+.++.......   ...........++|+++|++.+ +......+..++-
T Consensus       160 ~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v-a~~~~~~V~~i~p  236 (302)
T d2p4oa1         160 SESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIAP  236 (302)
T ss_dssp             TTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEECT
T ss_pred             ccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE-EEcCCCcEEEECC
Confidence                1234556554  3444 55566788998888765432   1222334567899999998655 4433345666654


Q ss_pred             C
Q 018806          326 A  326 (350)
Q Consensus       326 ~  326 (350)
                      .
T Consensus       237 ~  237 (302)
T d2p4oa1         237 D  237 (302)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=6.2e-07  Score=72.30  Aligned_cols=193  Identities=9%  Similarity=0.023  Sum_probs=118.5

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~  178 (350)
                      .-.+|+++++|+..++.. ..+.+..++...  .. .......-......++++++|. ++++... +.+++++-...  
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~--   88 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--TG-TTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNN--   88 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC------C-EEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSC--
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCC--ce-EEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccc--
Confidence            357899999999666543 456666666532  21 1222122233567889999965 4444444 55554433211  


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCe
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGL  257 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v  257 (350)
                       ..+..                      ..+  .....++++.++|+.+++-... ..+..++.......... ......
T Consensus        89 -~~~~~----------------------~~~--~~~p~~iavd~~g~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          89 -QTVLP----------------------FDG--LNYPEGLAVDTQGAVYVADRGN-NRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             -CEECC----------------------CCS--CCSEEEEEECTTCCEEEEEGGG-TEEEEECTTCSSCEECCCCSCCSC
T ss_pred             -eeeee----------------------eee--eeecccccccccceeEeecccc-ccccccccccceeeeeeecccCCc
Confidence             11110                      111  2467899999999877665555 47888887665433322 223556


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       258 ~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..++++++|+.+++...++.|..+|.+......+. ........++++++|++++ +......+..+...
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~v-sd~~~~~i~~~~~~  211 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAG  211 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTTEEEEECTT
T ss_pred             ceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeee-eecCCCEEEEEeCC
Confidence            78999999998888888889999998876554433 3445678999999997655 55444566666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.80  E-value=2.9e-07  Score=74.75  Aligned_cols=54  Identities=9%  Similarity=0.151  Sum_probs=39.2

Q ss_pred             EEecC--CCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec
Q 018806          106 SWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC  164 (350)
Q Consensus       106 ~~sp~--g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  164 (350)
                      .+|||  |+++|..+ ++.|.+.|+..  ++ ...++ .+.+.+...+|||||++|++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~--g~-~~~Lt-~~~~~~~~p~~SPDG~~iaf~~~   60 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKS--GS-TRKIV-SNLGVINNARFFPDGRKIAIRVM   60 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTT--CC-EEEEE-CSSSEEEEEEECTTSSEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCC--CC-EEEEe-cCCCcccCEEECCCCCEEEEEEe
Confidence            46789  99999865 45677777753  44 34443 45677899999999999988754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.71  E-value=9.4e-06  Score=65.88  Aligned_cols=218  Identities=9%  Similarity=0.031  Sum_probs=123.9

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-----CCCCCeeEEEEeeCCCeEEEEec--CCcEEEEecC
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPS  174 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~--d~~v~iwd~~  174 (350)
                      ...|+++++|+++++-...+.|++||.+   +.....+..     +....-..+++..+...++....  ++.|..++..
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~---G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC---CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            5789999999987776677889999864   554443321     11112345566555444444333  3566666543


Q ss_pred             CCCCCceeecccccccceecCCCCCceE-----------------Eeeec--cCCCCCceeeEEECCCCCeEEEEEeCCC
Q 018806          175 YPGNAASVRSGAASFLGALSRGPGTRWT-----------------LVDFL--RSQNGEQITALSWGPDGRYLASASYESS  235 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~g  235 (350)
                       ......+..........++...++.+.                 +...+  ..+ ......+++.++|+.+++.... +
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~i~~d~~g~i~v~d~~~-~  178 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKH-LEFPNGVVVNDKQEIFISDNRA-H  178 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTT-CSSEEEEEECSSSEEEEEEGGG-T
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccccc-ccccceeeeccceeEEeeeccc-c
Confidence             222222211111111112222222211                 11111  122 2466788999998877776666 6


Q ss_pred             eEEEEeCCCCCceeeeec---CCCeEEEEEcCCCCEEEEEec-CCeEEEEeCCCCcee-ccc--cCCCCeEEEEEcCCCC
Q 018806          236 SFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSE-PWS--STSGFVTGATWDPEGR  308 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~-d~~v~iwd~~~~~~~-~~~--~~~~~v~~~~~s~~g~  308 (350)
                      .|++||.... .......   ......+++.++|+.+++-.. ++.|.+|+. +++.. .+.  ......+.+++.+||.
T Consensus       179 ~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~  256 (279)
T d1q7fa_         179 CVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS  256 (279)
T ss_dssp             EEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred             ceeeeecCCc-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc
Confidence            9999997643 3333332   345788999999997766543 457999985 46643 222  2234678999999997


Q ss_pred             EEEEEECCCeEEEEEEeCCCC
Q 018806          309 MILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      +++ +.. ...+..+++....
T Consensus       257 l~V-~~~-n~~v~~fr~~~~~  275 (279)
T d1q7fa_         257 VVL-ASK-DYRLYIYRYVQLA  275 (279)
T ss_dssp             EEE-EET-TTEEEEEECSCCC
T ss_pred             EEE-EeC-CCeEEEEEeeeec
Confidence            554 443 3456666665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.52  E-value=2e-05  Score=64.39  Aligned_cols=183  Identities=11%  Similarity=0.079  Sum_probs=115.5

Q ss_pred             cCeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCC---CCCCeeEEEEeeCCCeEEEEecC----CcEEEEe
Q 018806          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD---SQRDVKVLEWRPNGGRSLSVGCK----GGICIWA  172 (350)
Q Consensus       100 ~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd  172 (350)
                      ..+.++++.++|+++++ +.+ .+.++|..+  ++........   ....++.+.+.|+|+..++....    +.-.+|.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~t--g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeC-ccEEeeccc--ceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            35789999999987764 555 477888754  4332222111   12357888999997665554332    2344555


Q ss_pred             cCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCC------
Q 018806          173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL------  246 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~------  246 (350)
                      +..+ ....                        .....  .....++|+++++.++.+....+.|..|++....      
T Consensus       135 ~~~g-~~~~------------------------~~~~~--~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~  187 (295)
T d2ghsa1         135 VAKG-KVTK------------------------LFADI--SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  187 (295)
T ss_dssp             EETT-EEEE------------------------EEEEE--SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             ecCC-cEEE------------------------Eeecc--CCcceeeecCCCceEEEeecccceeeEeeecccccccccc
Confidence            4421 1111                        11111  3457899999999887776655799999875321      


Q ss_pred             ceeee---ecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce-eccccCCCCeEEEEEc-CCCCEEEEEE
Q 018806          247 GTPIR---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD-PEGRMILLAF  314 (350)
Q Consensus       247 ~~~~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s-~~g~~l~~~~  314 (350)
                      .....   ...+....+++..+|++.++.-..+.|..||.+ ++. ..+.-....+++++|- +|.+.|++++
T Consensus       188 ~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         188 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            11111   123557889999999987777778899999965 555 3333334568999995 7888887765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.46  E-value=8.8e-07  Score=71.79  Aligned_cols=94  Identities=18%  Similarity=0.280  Sum_probs=74.4

Q ss_pred             EECCC--CCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEec-C-----CeEEEEeCCCCceec
Q 018806          219 SWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D-----GTFYLWETNTWTSEP  290 (350)
Q Consensus       219 ~~sp~--g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d-----~~v~iwd~~~~~~~~  290 (350)
                      ..+||  |+.++..+.  |.|.+.|+.+++...+..+.+.....+|||||++||.... +     ..|++++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC--DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEET--TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeC--CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46788  999998764  4799999999988888888888999999999999986542 2     258888998888766


Q ss_pred             cccCC-------CCeEEEEEcCCCCEEEEEE
Q 018806          291 WSSTS-------GFVTGATWDPEGRMILLAF  314 (350)
Q Consensus       291 ~~~~~-------~~v~~~~~s~~g~~l~~~~  314 (350)
                      +....       .....++|+|||+.|++..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            54332       2456789999999998864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.43  E-value=2.8e-05  Score=62.99  Aligned_cols=157  Identities=11%  Similarity=0.060  Sum_probs=103.4

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEe-cCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  179 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  179 (350)
                      ....+++.++|+++++....+.+.+++.+   ++....+ ...+......+++.+++..+++....+.|++||.. +...
T Consensus       115 ~p~~~avd~~G~i~v~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~  190 (279)
T d1q7fa_         115 HPRGVTVDNKGRIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYL  190 (279)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEE
T ss_pred             ccceeccccCCcEEEEeeccceeeEeccC---CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Ccee
Confidence            46789999999988876667777777753   4444433 22355678889999886554444446999999875 2211


Q ss_pred             ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee-c--CCC
Q 018806          180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-G--FGG  256 (350)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~-~--~~~  256 (350)
                      ..+.                       ..+.. .....+++.++|+.+++-..+++.|.+|+.. ++...... .  ...
T Consensus       191 ~~~g-----------------------~~g~~-~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~  245 (279)
T d1q7fa_         191 RQIG-----------------------GEGIT-NYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQ  245 (279)
T ss_dssp             EEES-----------------------CTTTS-CSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSC
T ss_pred             eeec-----------------------ccccc-cCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCC
Confidence            1110                       01222 4578899999998776654443479999854 55443322 2  245


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCc
Q 018806          257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWT  287 (350)
Q Consensus       257 v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~  287 (350)
                      ...+++.++|++++ ++.++.|++|......
T Consensus       246 p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         246 CFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            78899999997544 5678999999887643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.35  E-value=3.2e-05  Score=63.95  Aligned_cols=156  Identities=13%  Similarity=0.129  Sum_probs=98.6

Q ss_pred             CeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCC
Q 018806          146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  225 (350)
Q Consensus       146 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  225 (350)
                      .+..++|.++|+.+++-...+.|+.|+.........                         +... ......++++++|+
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~-------------------------~~~~-~~~p~gla~~~dG~   94 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-------------------------FVSH-KANPAAIKIHKDGR   94 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-------------------------EECS-SSSEEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE-------------------------EeCC-CCCeeEEEECCCCC
Confidence            456889999976444433468888887653221111                         1111 24678999999998


Q ss_pred             eEEEEEeC---CCeEEEEeCCCCCceeeeec---CCCeEEEEEcCCCCEEEEEec------CCeEEEEeCCCCceecccc
Q 018806          226 YLASASYE---SSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSS  293 (350)
Q Consensus       226 ~l~~~~~d---~g~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~------d~~v~iwd~~~~~~~~~~~  293 (350)
                      .+++...+   .+.+...+............   ......+++.++|++.++...      .+.++.++.+.+....+..
T Consensus        95 l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~  174 (319)
T d2dg1a1          95 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ  174 (319)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred             EEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee
Confidence            77765322   13566666666655544433   234678999999987665432      2346666666555544443


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       294 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      .-.....++|+||++.|+++......++.+++..
T Consensus       175 ~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         175 NISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            3445678999999999988876666777777653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.14  E-value=0.00015  Score=59.67  Aligned_cols=161  Identities=8%  Similarity=0.075  Sum_probs=98.6

Q ss_pred             eeEEEEecCCCEEEEEEC-------------CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCC----eEEEEec
Q 018806          102 LQGVSWHQHKHIVAFISG-------------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG----RSLSVGC  164 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~-------------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~  164 (350)
                      .+.+++.++|++.++-..             ...-+||.++. +++.....  ..-..-+.++|+|++.    .++.+..
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~  195 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAET  195 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee--CCcceeeeeEECCCCCcceeEEEEEee
Confidence            577999999988776321             11224554432 23322222  1223357899999864    3444444


Q ss_pred             -CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCC
Q 018806          165 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  243 (350)
Q Consensus       165 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~  243 (350)
                       .+.|..|++...+.....                   .....+.+........+++.++|+.+++.... |.|.+||.+
T Consensus       196 ~~~~i~~~d~~~~g~~~~~-------------------~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~-g~I~~~dp~  255 (314)
T d1pjxa_         196 PTKKLWSYDIKGPAKIENK-------------------KVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-SHIEVFGPD  255 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEE-------------------EEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-TEEEEECTT
T ss_pred             cccceEEeeccCcccccee-------------------eEEEEccccccccceeeEEecCCcEEEEEcCC-CEEEEEeCC
Confidence             588888887633222110                   01112222222345689999999877666556 699999988


Q ss_pred             CCCceee-eecCCCeEEEEEcCCCCEE-EEEecCCeEEEEeCCC
Q 018806          244 QGLGTPI-RRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNT  285 (350)
Q Consensus       244 ~~~~~~~-~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~iwd~~~  285 (350)
                      .++.... ........+++|.|+++.| ++.+.++.|..+++..
T Consensus       256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            7765543 3344678899999999865 5556678888888754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.90  E-value=0.0036  Score=50.52  Aligned_cols=192  Identities=12%  Similarity=0.093  Sum_probs=116.8

Q ss_pred             eEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          103 QGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       103 ~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      -+..|++....|.... ..+.|.-||.+.  ++. ..+  .....+.++++.++| .+++++. ..+.++|...+.. ..
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~--g~~-~~~--~~~~~~~~i~~~~dg-~l~va~~-~gl~~~d~~tg~~-~~   92 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLAS--GRK-TVH--ALPFMGSALAKISDS-KQLIASD-DGLFLRDTATGVL-TL   92 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTT--TEE-EEE--ECSSCEEEEEEEETT-EEEEEET-TEEEEEETTTCCE-EE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCC--CeE-EEE--ECCCCcEEEEEecCC-CEEEEEe-CccEEeeccccee-eE
Confidence            4567888666565554 567888888753  332 222  234578899999985 4555544 4588888774322 11


Q ss_pred             eecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC---CeEEEEeCCCCCceeeeecCCCeE
Q 018806          182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRRGFGGLS  258 (350)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---g~i~iwd~~~~~~~~~~~~~~~v~  258 (350)
                      +..                     .........+.++.+.|+|+..++.....   +.-.+|.+..++...+........
T Consensus        93 l~~---------------------~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~N  151 (295)
T d2ghsa1          93 HAE---------------------LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPN  151 (295)
T ss_dssp             EEC---------------------SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEE
T ss_pred             Eee---------------------eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcc
Confidence            110                     01111123678899999998777654321   244566666666555555556677


Q ss_pred             EEEEcCCCCEEEEE-ecCCeEEEEeCCCCce------e---ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          259 ILKWSPTGDYFFAA-KFDGTFYLWETNTWTS------E---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       259 ~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~------~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      .++|+++++.+..+ +..+.|+.|+++....      .   ......+....+++..+|++.++...+ ..|..++
T Consensus       152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-g~V~~~d  226 (295)
T d2ghsa1         152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-GAVDRYD  226 (295)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-TEEEEEC
T ss_pred             eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-CceEEec
Confidence            89999999977554 5578899998753221      1   112334567889999999866654333 2444443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.73  E-value=0.0076  Score=49.54  Aligned_cols=191  Identities=10%  Similarity=0.044  Sum_probs=104.5

Q ss_pred             eeEEEEecCCCEEEEEEC------------CCeEEEEEccCCCCCceeEecCCCC-----CCeeEEEE--eeCCCe-EEE
Q 018806          102 LQGVSWHQHKHIVAFISG------------STQVIVRDYEDSEGKDACILTSDSQ-----RDVKVLEW--RPNGGR-SLS  161 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~------------d~~i~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~--sp~~~~-l~~  161 (350)
                      .-++...|+|..+++++.            .|.|.++|+...+.........+..     -.-..+..  .++|.. |++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            456788889877766432            3888899986533322121111110     11223332  223332 233


Q ss_pred             Eec---CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe--C---
Q 018806          162 VGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--E---  233 (350)
Q Consensus       162 ~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--d---  233 (350)
                      ...   ..+|.+|++.....                     .+.....+.........++++..+|..+++-..  .   
T Consensus       117 vnH~~~~~~ieif~~~~~~~---------------------~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEK---------------------SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY  175 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTT---------------------EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHH
T ss_pred             EeccCCCceeEEEEEeCCCC---------------------eEEEEeecCCccccCccceEEecCCCEEEecCccCcChh
Confidence            322   24556666542221                     222334444443356788999888887776311  0   


Q ss_pred             ---------CCeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCcee---ccccCCCCeEE
Q 018806          234 ---------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSE---PWSSTSGFVTG  300 (350)
Q Consensus       234 ---------~g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~~---~~~~~~~~v~~  300 (350)
                               .++..+|..+.+........-.....++++||+++|+++ +..+.|++|++...+..   ....-....-.
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDN  255 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN  255 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEE
T ss_pred             hhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCc
Confidence                     013344444445444444455678899999999988665 45779999998754432   22234556778


Q ss_pred             EEEcC-CCCEEEEE
Q 018806          301 ATWDP-EGRMILLA  313 (350)
Q Consensus       301 ~~~s~-~g~~l~~~  313 (350)
                      +.+.+ +|.+.+.+
T Consensus       256 i~~d~~~g~lwva~  269 (340)
T d1v04a_         256 ISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEECTTTCCEEEEE
T ss_pred             cEEecCCCEEEEEE
Confidence            88876 45555544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=0.0077  Score=47.55  Aligned_cols=191  Identities=9%  Similarity=0.013  Sum_probs=119.0

Q ss_pred             CCEEEEEECCCeEEEEEccCCCCCc--eeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccc
Q 018806          111 KHIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA  187 (350)
Q Consensus       111 g~~la~~s~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~  187 (350)
                      |.+|+.+. .+.|+-.+++..+...  .......+...+..++|.+..++++.+.. .+.|+..++.. .....+.    
T Consensus         1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-~~~~~v~----   74 (263)
T d1npea_           1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTII----   74 (263)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEE----
T ss_pred             CCEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc-CCcEEEE----
Confidence            34565543 3466666765322111  11111123345778999888777776655 47788777762 2222111    


Q ss_pred             cccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeeec-CCCeEEEEEcCCC
Q 018806          188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTG  266 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~g  266 (350)
                                          ... -..+.++++..-++.|+.+....+.|.+.++.......+... ...+..++++|..
T Consensus        75 --------------------~~~-~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~  133 (263)
T d1npea_          75 --------------------RQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (263)
T ss_dssp             --------------------CTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             --------------------Eec-cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEeccc
Confidence                                111 146788999887778877766556999999987765555443 3678899999987


Q ss_pred             CEEEEEecC---CeEEEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          267 DYFFAAKFD---GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       267 ~~l~~~~~d---~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      .+++.....   ..|.--+++......+. ..-.....+++++.++.|+.+..+...+...++...
T Consensus       134 g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence            777654332   24555567655444433 233456899999999999888766667777777543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.0092  Score=47.10  Aligned_cols=196  Identities=6%  Similarity=-0.045  Sum_probs=126.5

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  178 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~  178 (350)
                      .+.+++|++..++|..+. .++.|+..+++.  ... ..+.......+..+++..-++.++.+.. .+.|.+.++.....
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g--~~~-~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG--GEP-TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS--CCC-EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEccc--CCc-EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            367899999888888765 457777777753  222 3332233356888999876677776655 48899888873221


Q ss_pred             CceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC--CeEEEEeCCCCCceeeee-cCC
Q 018806          179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRR-GFG  255 (350)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--g~i~iwd~~~~~~~~~~~-~~~  255 (350)
                       ..+.                        ... ...+..+++.|...+++......  +.|..-++.......+.. .-.
T Consensus       114 -~~l~------------------------~~~-l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~  167 (263)
T d1npea_         114 -RVLF------------------------DTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (263)
T ss_dssp             -EEEE------------------------CSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             -EEEe------------------------ccc-ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence             1111                        111 24678999999877776554331  245555666554444443 335


Q ss_pred             CeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          256 GLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ....+++.+.++.|..+ ...+.|...|++......+........++++.  +.+|+.+..+...+..++...
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence            67899999888887655 45678999999876654444333345677775  677888876667888887764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.46  E-value=0.013  Score=48.94  Aligned_cols=188  Identities=12%  Similarity=0.006  Sum_probs=104.1

Q ss_pred             cCCCEEEEEE-CCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCC--CeEEEEecCC------------------c
Q 018806          109 QHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCKG------------------G  167 (350)
Q Consensus       109 p~g~~la~~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~------------------~  167 (350)
                      +||++|.... .+..|.+-|++.  .+....+.......+..++..+++  .++++.+...                  .
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~--fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDV--MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTT--TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcc--eeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            3889998876 477888889865  444333333455667877776543  3444433321                  1


Q ss_pred             EEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCC------------
Q 018806          168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS------------  235 (350)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g------------  235 (350)
                      +.+.|....+.                        .++...+   +....+.++++|+++++.+.+..            
T Consensus       175 ~t~ID~~tm~V------------------------~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e  227 (459)
T d1fwxa2         175 FTAVDADKWEV------------------------AWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE  227 (459)
T ss_dssp             EEEEETTTTEE------------------------EEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred             EEEEecCCceE------------------------EEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhccccc
Confidence            22333331111                        1111111   34567788888888777654310            


Q ss_pred             --eEE-----------------------EEeCCCC---CceeeeecCCCeEEEEEcCCCCEEEEEe-cCCeEEEEeCCCC
Q 018806          236 --SFT-----------------------IWDVAQG---LGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTW  286 (350)
Q Consensus       236 --~i~-----------------------iwd~~~~---~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~iwd~~~~  286 (350)
                        .+.                       +-|.+..   .......-......+.++|||+++++++ .+.++.|+|++.-
T Consensus       228 ~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         228 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             ceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence              233                       3333321   1111222223456789999999987665 5889999999632


Q ss_pred             ce--------e----ccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          287 TS--------E----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       287 ~~--------~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      ..        .    ......-....-+|+.+| ..+++.--++.+-.|.+.
T Consensus       308 ~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         308 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             HHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             hhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecc
Confidence            11        1    111223345677899888 466665555677777763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.33  E-value=0.0048  Score=51.57  Aligned_cols=148  Identities=12%  Similarity=0.035  Sum_probs=88.0

Q ss_pred             eCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCC--CCeEEEE
Q 018806          154 PNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASA  230 (350)
Q Consensus       154 p~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~  230 (350)
                      +||+++++... +..|.+-|+...+.                         .+.+.......+..+...++  -.+++..
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt-------------------------~kIi~iPn~~~~HG~r~~~~p~T~YV~~~  151 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKC-------------------------DAILEIPNAKGIHGLRPQKWPRSNYVFCN  151 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE-------------------------EEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceee-------------------------eEEEecCCCCCCceeecccCCCeEEEEcc
Confidence            47777777666 48888888873332                         12122222245566665543  4455555


Q ss_pred             EeCC-----------------CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCC---------------eE
Q 018806          231 SYES-----------------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG---------------TF  278 (350)
Q Consensus       231 ~~d~-----------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---------------~v  278 (350)
                      +...                 +.+.++|..+.+......-.+....+.++++|+++++.+.+.               .+
T Consensus       152 ~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i  231 (459)
T d1fwxa2         152 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  231 (459)
T ss_dssp             ECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             CccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEE
Confidence            4421                 246778888877665554456677899999999998776431               23


Q ss_pred             E-----------------------EEeCCCCc---eeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeC
Q 018806          279 Y-----------------------LWETNTWT---SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  326 (350)
Q Consensus       279 ~-----------------------iwd~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~  326 (350)
                      .                       +.|.+...   ...+.........+..+|||+++++++.-+..+-.+++.
T Consensus       232 ~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         232 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            3                       33333211   111122223456789999999999998655556666654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.26  E-value=0.011  Score=49.18  Aligned_cols=162  Identities=10%  Similarity=0.027  Sum_probs=97.4

Q ss_pred             eeEEEEecCCCEEEEEECC-----C------eEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC-CcEE
Q 018806          102 LQGVSWHQHKHIVAFISGS-----T------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGIC  169 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d-----~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~  169 (350)
                      +.......+|+.++.|+.+     +      .+.+||..+.+..........+.......++.++|..++.++.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            3444455688988888742     1      36789997655444333333455555677888997666665555 7899


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCC-----CeEEEEeCCC
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-----SSFTIWDVAQ  244 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-----g~i~iwd~~~  244 (350)
                      +||....                       .|.....+...  ......+..+||+.++.++...     ..+.+||..+
T Consensus       102 ~yd~~~~-----------------------~w~~~~~~~~~--r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         102 LYDSSSD-----------------------SWIPGPDMQVA--RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEGGGT-----------------------EEEECCCCSSC--CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EecCccC-----------------------ccccccccccc--ccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            9998732                       22222222221  2345677788999998887532     2689999987


Q ss_pred             CCceeeeec----------C-----CCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCce
Q 018806          245 GLGTPIRRG----------F-----GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  288 (350)
Q Consensus       245 ~~~~~~~~~----------~-----~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~  288 (350)
                      .+...+...          .     .....+.--++|+.++.+...+.+.+++..+...
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            754322110          0     0111122345777777777777788888877654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.041  Score=43.27  Aligned_cols=190  Identities=11%  Similarity=0.008  Sum_probs=120.5

Q ss_pred             EEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCCCCceeecccccccc
Q 018806          113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG  191 (350)
Q Consensus       113 ~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~  191 (350)
                      +|+.+. ...|+-.+++.  ... ..+. .....+.+++|.+..++++.+.. .+.|+..++........          
T Consensus         3 fLl~s~-~~~I~~~~l~~--~~~-~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~----------   67 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----------   67 (266)
T ss_dssp             EEEEEC-BSSEEEEETTS--CCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------
T ss_pred             EEEEEC-CCeEEEEECCC--Ccc-eeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc----------
Confidence            455443 34588788864  222 2222 34456789999988777776654 36666655542111100          


Q ss_pred             eecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeee-ecCCCeEEEEEcCCCCEEE
Q 018806          192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFF  270 (350)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~  270 (350)
                                  ...+.......+..+++.+.++.|+.+....++|.+.++.......+. ........++++|...+|.
T Consensus        68 ------------~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly  135 (266)
T d1ijqa1          68 ------------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  135 (266)
T ss_dssp             ------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             ------------eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEE
Confidence                        000111112456789998888888877666579999999877654433 3346788999999766665


Q ss_pred             EEe--cCCeEEEEeCCCCceecccc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCCC
Q 018806          271 AAK--FDGTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  329 (350)
Q Consensus       271 ~~~--~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~  329 (350)
                      ...  ..+.|.-.++.......+.. .-.....+++++.++.|+.+......+..+++....
T Consensus       136 ~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         136 WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            543  34568778887666555443 335678999999999999987666788888876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.059  Score=42.29  Aligned_cols=200  Identities=5%  Similarity=-0.065  Sum_probs=124.0

Q ss_pred             CeeEEEEecCCCEEEEEE-CCCeEEEEEccCCCC-CceeEecCCCCCCeeEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 018806          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  177 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s-~d~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  177 (350)
                      .+.++.|++..+.|.... ..+.|.-.+++.... .............+..+++.+.++.+..+.. .+.|.+.++.-..
T Consensus        31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~  110 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (266)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce
Confidence            577899999888888765 456666556542111 1112222223345778888877777777655 4889999887222


Q ss_pred             CCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEe-CCCeEEEEeCCCCCceeeee-cCC
Q 018806          178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR-GFG  255 (350)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~g~i~iwd~~~~~~~~~~~-~~~  255 (350)
                      . ..+                        +... ......++++|...+|+.+.. ..+.|...++.......+.. .-.
T Consensus       111 ~-~~~------------------------~~~~-~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~  164 (266)
T d1ijqa1         111 R-KTL------------------------FREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  164 (266)
T ss_dssp             E-EEE------------------------EECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred             E-EEE------------------------EcCC-CCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc
Confidence            1 111                        1111 246788999987666665432 22478778887665555543 336


Q ss_pred             CeEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCceeccc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCCC
Q 018806          256 GLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  328 (350)
Q Consensus       256 ~v~~~~~sp~g~~l~~~-~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~  328 (350)
                      ....+++.+.++.|..+ ...+.|...++.......+.   .......++++.  +.+|+.+......++.++....
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCC
Confidence            67899999988877666 44679999999776543332   222345567665  5678888766678888876553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.72  E-value=0.029  Score=47.62  Aligned_cols=113  Identities=19%  Similarity=0.265  Sum_probs=74.2

Q ss_pred             eeeEEECCCCCeEEEEEeCCC----eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecC---------------
Q 018806          215 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD---------------  275 (350)
Q Consensus       215 v~~~~~sp~g~~l~~~~~d~g----~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---------------  275 (350)
                      +..+++||++++++.+-..+|    +++++|+.+++.....-.......++|++|++.|+....+               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            445678999999987654434    8999999999765422222223568999999988755432               


Q ss_pred             -CeEEEEeCCCCcee--cc-cc--CCCCeEEEEEcCCCCEEEEEE-C---CCeEEEEEEeCC
Q 018806          276 -GTFYLWETNTWTSE--PW-SS--TSGFVTGATWDPEGRMILLAF-A---GSLTLGSIHFAS  327 (350)
Q Consensus       276 -~~v~iwd~~~~~~~--~~-~~--~~~~v~~~~~s~~g~~l~~~~-~---~~~~~~~~~~~~  327 (350)
                       ..|+.+.+.+....  .+ ..  ....+..+..+.++++++... .   ....++.++...
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence             25788888765442  11 11  223466788899999987653 2   234577777654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.45  E-value=0.2  Score=42.12  Aligned_cols=226  Identities=9%  Similarity=0.054  Sum_probs=113.0

Q ss_pred             CeeEEEEecCCCEEEEEEC-----CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecC----------
Q 018806          101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----------  165 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----------  165 (350)
                      .+..+++|||++++|.+-.     ...++++|+.+  ++.+.....  ......+.|.+|++.+++...+          
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t--g~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG--AKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT--TEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCc--ceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            4567789999999997532     24788889864  543332211  1123578999998888876533          


Q ss_pred             ------CcEEEEecCCCCCCceee-cccccc--cceecCCCCCceEEeeeccCCCC-Ccee------------------e
Q 018806          166 ------GGICIWAPSYPGNAASVR-SGAASF--LGALSRGPGTRWTLVDFLRSQNG-EQIT------------------A  217 (350)
Q Consensus       166 ------~~v~iwd~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~------------------~  217 (350)
                            ..|..+.+........+. ......  ......+.++++.++....+-.. ..+.                  .
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  256677766443222211 111111  11122344444433322111000 0000                  0


Q ss_pred             EE---------ECCCCCeEEEEEeC---CCeEEEEeCCCCCc---eeeee-cCCCeEEEEEcCCCCEEEEE-ecCC--eE
Q 018806          218 LS---------WGPDGRYLASASYE---SSSFTIWDVAQGLG---TPIRR-GFGGLSILKWSPTGDYFFAA-KFDG--TF  278 (350)
Q Consensus       218 ~~---------~sp~g~~l~~~~~d---~g~i~iwd~~~~~~---~~~~~-~~~~v~~~~~sp~g~~l~~~-~~d~--~v  278 (350)
                      +.         ...+|..++.-+..   ++.|...++.....   ..+.. +...+..-.++..+.+|+.. ..++  .|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l  361 (430)
T d1qfma1         282 LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL  361 (430)
T ss_dssp             EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred             eecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEE
Confidence            00         11122223322221   14566666665432   22333 33445444444455566544 4554  68


Q ss_pred             EEEeCCCCceeccc-cCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEEEeCCCCC
Q 018806          279 YLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAF---AGSLTLGSIHFASKPP  330 (350)
Q Consensus       279 ~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~---~~~~~~~~~~~~~~~~  330 (350)
                      ++++..+++...+. ...+.+..+...++...+....   -.-..++.+++.....
T Consensus       362 ~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            99999988774433 3344566666666666555442   2236788888876544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.28  E-value=0.26  Score=41.72  Aligned_cols=55  Identities=13%  Similarity=0.231  Sum_probs=36.3

Q ss_pred             CeeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecC-----CCCCCeeEEEEeeC
Q 018806          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPN  155 (350)
Q Consensus       101 ~V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~  155 (350)
                      .-++|+|.|||+++++--..|.|++++........+..+..     .-++....|+|+|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            36899999999988765447989888765432222222211     12356889999986

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.61  E-value=0.37  Score=37.89  Aligned_cols=180  Identities=13%  Similarity=0.161  Sum_probs=104.7

Q ss_pred             eeEEEEecCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEEEEecCCCCCCce
Q 018806          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  181 (350)
Q Consensus       102 V~~v~~sp~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  181 (350)
                      ..+.-.+|..+.||.-+ ..++.|+|++.  .+.+....  ....|.-=+|-.+ + .++--++..|+-|+++....+..
T Consensus        65 AdsAIMhP~~~IiALra-g~~LQiFnlet--K~klks~~--~~e~VvfWkWis~-~-~L~lVT~taVYHW~~~g~s~P~k  137 (327)
T d1utca2          65 ADSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL-N-TVALVTDNAVYHWSMEGESQPVK  137 (327)
T ss_dssp             CSEEEECSSSSEEEEEE-TTEEEEEETTT--TEEEEEEE--CSSCCCEEEESSS-S-EEEEECSSEEEEEESSSSCCCEE
T ss_pred             hhhhhcCCCCcEEEEec-CCeEEEEehhH--hhhhceEE--cCCCcEEEEecCC-C-EEEEEcCCceEEEcccCCCCchh
Confidence            44566788999888765 66899999975  44444432  3456777788755 3 45555667899999975445555


Q ss_pred             eecccccc----cceecCCCCCceEEeeeccCCCCCce-------------------eeEEE---CCCC-----CeEEEE
Q 018806          182 VRSGAASF----LGALSRGPGTRWTLVDFLRSQNGEQI-------------------TALSW---GPDG-----RYLASA  230 (350)
Q Consensus       182 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~---sp~g-----~~l~~~  230 (350)
                      +...+...    +-....+.+.+|.++--+.... +.|                   .+.+|   --+|     +.++.+
T Consensus       138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~-~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa  216 (327)
T d1utca2         138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ-NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFA  216 (327)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEET-TEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred             hhhhcccccCceEEEEEECCCCCEEEEEeEecCC-CceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEE
Confidence            44433222    2225556677777543222111 111                   12222   1122     233333


Q ss_pred             Ee--CCCeEEEEeCCCCCc--e----e---ee-ec---CCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCcee
Q 018806          231 SY--ESSSFTIWDVAQGLG--T----P---IR-RG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  289 (350)
Q Consensus       231 ~~--d~g~i~iwd~~~~~~--~----~---~~-~~---~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~  289 (350)
                      ..  ..+++.+.++.....  .    .   +. ..   .+-..++..|+.-..+..-+.-|.|++||++++.+.
T Consensus       217 ~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         217 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             ECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence            22  114777887765311  0    0   11 11   233567778887778888889999999999999884

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.29  E-value=0.082  Score=43.57  Aligned_cols=75  Identities=11%  Similarity=0.048  Sum_probs=53.6

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee--cCCCeEEEEEcCCCCEEEEEecC------CeEEEEeCCC
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFD------GTFYLWETNT  285 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d------~~v~iwd~~~  285 (350)
                      .....++.++|+.++.++.+...+.+||..+........  .......++..+||+.++.++.+      ..+.+||..+
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            345678889999999887765589999998876543322  12334467778899998888643      3689999987


Q ss_pred             Cce
Q 018806          286 WTS  288 (350)
Q Consensus       286 ~~~  288 (350)
                      .+-
T Consensus       157 ~~W  159 (387)
T d1k3ia3         157 KTW  159 (387)
T ss_dssp             TEE
T ss_pred             Cce
Confidence            653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.08  E-value=0.97  Score=39.49  Aligned_cols=80  Identities=16%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC--CCCeEEEEEcCCCC-EEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGR-MIL  311 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~-~l~  311 (350)
                      |.|.-+|+.+++.........++..-..+..|..+++|+.||.++.+|.++|+.+-....  ...-.-|.|..+|+ ||+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            467778888887765554433333222345677888899999999999999998532211  11112267778896 455


Q ss_pred             EEE
Q 018806          312 LAF  314 (350)
Q Consensus       312 ~~~  314 (350)
                      +..
T Consensus       546 i~a  548 (582)
T d1flga_         546 VTV  548 (582)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.06  E-value=0.4  Score=41.96  Aligned_cols=80  Identities=16%  Similarity=0.146  Sum_probs=48.5

Q ss_pred             eEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCCe--EEEEEcCCCC-EEEE
Q 018806          236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGR-MILL  312 (350)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~s~~g~-~l~~  312 (350)
                      .+.-||+.+++.........+...-..+-.|..|++|+.|+.++.+|.++|+..-.......+  .-+.|..||+ ||++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            566677777766654443333222223346778888999999999999999985322211111  1256667887 4555


Q ss_pred             EEC
Q 018806          313 AFA  315 (350)
Q Consensus       313 ~~~  315 (350)
                      ..+
T Consensus       538 ~~G  540 (573)
T d1kb0a2         538 AVG  540 (573)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.77  E-value=0.79  Score=36.96  Aligned_cols=107  Identities=9%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             CCCCCe-EEEEEe--CCCeEEEEeCCCCCc--eeee--ec--CCCeEEEEEcCCCCEEEEEec---------------CC
Q 018806          221 GPDGRY-LASASY--ESSSFTIWDVAQGLG--TPIR--RG--FGGLSILKWSPTGDYFFAAKF---------------DG  276 (350)
Q Consensus       221 sp~g~~-l~~~~~--d~g~i~iwd~~~~~~--~~~~--~~--~~~v~~~~~sp~g~~l~~~~~---------------d~  276 (350)
                      .++|+. |++...  .+.+|.+|++.....  ....  .+  ......+++..+|.++++-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            456653 444432  113888888764432  1111  12  245788998889988887321               12


Q ss_pred             eEEEEeCCCCceeccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEEeCC
Q 018806          277 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  327 (350)
Q Consensus       277 ~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~~~~  327 (350)
                      ..++|..+.++.......-.....++++||+++|+++......++.+++..
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            345555555555444444456789999999999999986666677766654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.54  E-value=0.45  Score=41.63  Aligned_cols=79  Identities=11%  Similarity=-0.022  Sum_probs=50.9

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCC--eEEEEEcCCCCE-EE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF--VTGATWDPEGRM-IL  311 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~g~~-l~  311 (350)
                      |.|.-+|+++++.........+..+-..+-.+.++++++.|+.++.+|.++|+..-.......  -.-+.|..||++ |+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~  523 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEE
Confidence            589999999998776554433322212233466788899999999999999998532222222  223567778865 44


Q ss_pred             EE
Q 018806          312 LA  313 (350)
Q Consensus       312 ~~  313 (350)
                      +.
T Consensus       524 v~  525 (571)
T d2ad6a1         524 SM  525 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.71  E-value=0.53  Score=39.71  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=61.7

Q ss_pred             CceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCceeeee---------cCCCeEEEEEcCC---CCEEEEE-e------
Q 018806          213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---------GFGGLSILKWSPT---GDYFFAA-K------  273 (350)
Q Consensus       213 ~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp~---g~~l~~~-~------  273 (350)
                      ...++|+|.|||+.+++.-.. |.|++++..++....+..         .++....++|+|+   ..+|... +      
T Consensus        27 ~~P~~la~~pdg~llVter~~-G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERAT-GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTT-CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEeCCCeEEEEEecC-CEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            467899999999888765445 799999988876543332         2367889999995   3344332 1      


Q ss_pred             cC----C--eEEEEeCCCCce-----ec----c-ccCCCCeEEEEEcCCCCEEEEEEC
Q 018806          274 FD----G--TFYLWETNTWTS-----EP----W-SSTSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       274 ~d----~--~v~iwd~~~~~~-----~~----~-~~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                      .+    +  .+..+.......     ..    + .........++|.|||.+.++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            01    1  233333332221     00    1 122244678999999987665554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.71  E-value=1.9  Score=37.29  Aligned_cols=80  Identities=11%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccCCCC--eEEEEEcCCCC-EEE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF--VTGATWDPEGR-MIL  311 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~g~-~l~  311 (350)
                      |.+.-||+.+++.............-.++-.|.+++.++.||.++.+|.++|+..-.......  -.-+.|..+|+ ||+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            467788888887765544433333222334566888899999999999999998532211111  12256667886 455


Q ss_pred             EEE
Q 018806          312 LAF  314 (350)
Q Consensus       312 ~~~  314 (350)
                      +..
T Consensus       518 v~a  520 (560)
T d1kv9a2         518 IMA  520 (560)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.96  E-value=1.9  Score=35.12  Aligned_cols=178  Identities=10%  Similarity=-0.024  Sum_probs=102.8

Q ss_pred             ccCeeEEEEecCCCEEEEEECCCeEEEEEccC---------CCCCceeEecCCCCCCeeEEEEeeCCCeEEEEecCCcEE
Q 018806           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED---------SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC  169 (350)
Q Consensus        99 ~~~V~~v~~sp~g~~la~~s~d~~i~iw~~~~---------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~  169 (350)
                      .....-++++....+++.|+.++ +.|.....         .........   .-..|..++|+-+  . ++...++.+.
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d--~-l~v~~~~~l~  108 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGD--Q-VLVSTRNALY  108 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETT--E-EEEEESSEEE
T ss_pred             ccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCC--E-EEEEeCCCEE
Confidence            34577889998888888888775 56766421         011111111   1135888999755  3 4445666777


Q ss_pred             EEecCCCCCCceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee
Q 018806          170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  249 (350)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~  249 (350)
                      .++...-.......                      .+    ...+.++.++|.  .++....+ |.+.++++..++...
T Consensus       109 ~~~~~~l~~~~~~~----------------------~~----~~~~~~~~~~p~--~~~l~~~~-~~~~~~~l~~~~~~~  159 (381)
T d1xipa_         109 SLDLEELSEFRTVT----------------------SF----EKPVFQLKNVNN--TLVILNSV-NDLSALDLRTKSTKQ  159 (381)
T ss_dssp             EEESSSTTCEEEEE----------------------EC----SSCEEEEEECSS--EEEEEETT-SEEEEEETTTCCEEE
T ss_pred             EEEeeccccccccc----------------------cc----cccccceecCCc--eeEEEecC-CCEEEEEeccCcccc
Confidence            77766322111110                      01    146778888775  45555556 699999999886544


Q ss_pred             eee------cCCCeEEEEEcCCCCEEEEEecCCeEEEE-eCCCCcee-ccccCCCCeEEEEEcCCCCEEEEE
Q 018806          250 IRR------GFGGLSILKWSPTGDYFFAAKFDGTFYLW-ETNTWTSE-PWSSTSGFVTGATWDPEGRMILLA  313 (350)
Q Consensus       250 ~~~------~~~~v~~~~~sp~g~~l~~~~~d~~v~iw-d~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~  313 (350)
                      +..      -.+.+.+++|++.|+.++++..++ ..+- ++...... .-......+.++.|-.+..++++-
T Consensus       160 ~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         160 LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            331      236678888888888887764322 2221 22111111 111234578899999877777654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.50  E-value=2.1  Score=34.45  Aligned_cols=192  Identities=13%  Similarity=0.128  Sum_probs=106.5

Q ss_pred             cCCCEEEEEECCCeEEEEEccCCCCCceeEecCCCCCCeeEEEEee----CCC--eEEEEec-C---CcEEEEecCCCCC
Q 018806          109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP----NGG--RSLSVGC-K---GGICIWAPSYPGN  178 (350)
Q Consensus       109 p~g~~la~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~--~l~~~~~-d---~~v~iwd~~~~~~  178 (350)
                      |+..+|+.....+-+.+||++   |+.+..+.   .+.++.+..-.    +++  .+++++. +   .++.+|.+.....
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~---G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE---GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT---CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             cCccEEEEEcCcCCEEEEcCC---CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            455677776777779999985   66555442   45677766542    222  2344442 2   3577887752211


Q ss_pred             C-ceeecccccccceecCCCCCceEEeeeccCCCCCceeeEEE--CCC-CCeEEEEEeCCCeEEEEeCC---CCCc----
Q 018806          179 A-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPD-GRYLASASYESSSFTIWDVA---QGLG----  247 (350)
Q Consensus       179 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-g~~l~~~~~d~g~i~iwd~~---~~~~----  247 (350)
                      . ..+....                  ..... ....+..+++  ++. |...+..+...|.+..|.+.   .+..    
T Consensus       112 ~l~~~~~~~------------------~p~~~-~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~l  172 (353)
T d1h6la_         112 TLQSITDPN------------------RPIAS-AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKK  172 (353)
T ss_dssp             EEEECSCSS------------------SCEEC-SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEE
T ss_pred             ccccccccc------------------ccccc-ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEe
Confidence            1 1100000                  00000 0134677777  654 65556666555899888763   2222    


Q ss_pred             eeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCC--ceeccc------cCCCCeEEEEEc--CCCC-EEEEEECC
Q 018806          248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW--TSEPWS------STSGFVTGATWD--PEGR-MILLAFAG  316 (350)
Q Consensus       248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~--~~~~~~------~~~~~v~~~~~s--~~g~-~l~~~~~~  316 (350)
                      ...+.....+..|.+......|+.+-++.-|+.++.+-.  ....+.      ....-+-.++.-  .++. +|++++.+
T Consensus       173 vr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG  252 (353)
T d1h6la_         173 VRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG  252 (353)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             eeccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence            223344577889999999899999988887877776532  211111      123456666643  3444 77777655


Q ss_pred             CeEEEEEEe
Q 018806          317 SLTLGSIHF  325 (350)
Q Consensus       317 ~~~~~~~~~  325 (350)
                      +......+.
T Consensus       253 ~n~f~vydr  261 (353)
T d1h6la_         253 NSSYAIYER  261 (353)
T ss_dssp             GTEEEEEES
T ss_pred             CCeEEEEec
Confidence            555444444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.77  E-value=2.3  Score=33.27  Aligned_cols=160  Identities=6%  Similarity=0.038  Sum_probs=89.9

Q ss_pred             CccCeeEEEEecCCCEEEEEE---C----CCeEEEEEccCCCCCceeEecCCCCCCeeEEEEe--eCCCeEEEEecC---
Q 018806           98 PEVDLQGVSWHQHKHIVAFIS---G----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCK---  165 (350)
Q Consensus        98 ~~~~V~~v~~sp~g~~la~~s---~----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d---  165 (350)
                      .+..|-.-..+++++|++..+   .    .|.+.+|..+.    ...+...+|.+....+...  ++...+++.+..   
T Consensus       146 ~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         146 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc----CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            355788888889999988754   2    46788999852    2234445675444444332  111234443332   


Q ss_pred             -CcEEEEecCCCCCC-ceeecccccccceecCCCCCceEEeeeccCC--CCCceeeEEECCCCCeEEEEEeCCCeEEEEe
Q 018806          166 -GGICIWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--NGEQITALSWGPDGRYLASASYESSSFTIWD  241 (350)
Q Consensus       166 -~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~g~i~iwd  241 (350)
                       ++++|.++...... ..+..                 +..+.+-..  ...-..++..|+.-..++..+.- |.+.+||
T Consensus       222 ~~kLhIiEig~~~~g~~~f~k-----------------k~vdi~fppea~~DFPvamqvs~kygiiyviTK~-G~i~lyD  283 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPK-----------------KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY-GYIHLYD  283 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCC-----------------EEEECCCCTTCTTCCEEEEEEETTTTEEEEEETT-SEEEEEE
T ss_pred             CcEEEEEEcCCCccCCCCCcc-----------------eeEEEECCccccCCcEEEEEeeccCCEEEEEecC-cEEEEEE
Confidence             67888888753221 11110                 011111110  11345677888877788888888 7999999


Q ss_pred             CCCCCceeeeec-CCCeEEEEEcCCCCEEEEEecCCeEE
Q 018806          242 VAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFY  279 (350)
Q Consensus       242 ~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~d~~v~  279 (350)
                      +.++.+.....- ...|...+-+.+..=+++...+|.|.
T Consensus       284 leTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         284 LETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            999988765443 34454444343433344444556543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.68  E-value=0.27  Score=43.28  Aligned_cols=79  Identities=11%  Similarity=0.014  Sum_probs=50.2

Q ss_pred             CeEEEEeCCCCCceeeeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccccC--CCCeEEEEEcCCCCE-EE
Q 018806          235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRM-IL  311 (350)
Q Consensus       235 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~-l~  311 (350)
                      |.|.-||..+++.........+..+-.++..|.+++.|+.||.++.+|.++|+..-....  ...-.-|.|..||++ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            478888888888765444443333323344677888899999999999999998532211  111122456678864 54


Q ss_pred             EE
Q 018806          312 LA  313 (350)
Q Consensus       312 ~~  313 (350)
                      +.
T Consensus       533 v~  534 (596)
T d1w6sa_         533 IY  534 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.28  E-value=6  Score=33.99  Aligned_cols=49  Identities=10%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeE--EEEEcCCCC-EEEEE
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS--ILKWSPTGD-YFFAA  272 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~--~~~~sp~g~-~l~~~  272 (350)
                      .|..++.++.| |.++.+|.++|+.+........+.  -+.+..+|+ +|++.
T Consensus       468 agglVF~G~~d-g~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         468 AGNLVFQGTAA-GQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM  519 (560)
T ss_dssp             TTTEEEEECTT-SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCEEEEECCC-CcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            45677777888 799999999999876554333322  255667886 44443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.59  E-value=5.8  Score=31.77  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             CeEEEEE--cCC-CCE-EEEEecCCeEEEEeCC---CCce----eccccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEE
Q 018806          256 GLSILKW--SPT-GDY-FFAAKFDGTFYLWETN---TWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  324 (350)
Q Consensus       256 ~v~~~~~--sp~-g~~-l~~~~~d~~v~iwd~~---~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~~~  324 (350)
                      .++.+|+  ++. |.. +++...+|.+..|.+.   .+..    .+.......+..|++......|+++-.+. .+|.+.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~-Giw~~~  207 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDE-AIWKFS  207 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCcc-ceEEEE
Confidence            4667776  664 554 4566678888888663   3332    22334556789999999999999886543 456555


Q ss_pred             eC
Q 018806          325 FA  326 (350)
Q Consensus       325 ~~  326 (350)
                      ..
T Consensus       208 a~  209 (353)
T d1h6la_         208 AE  209 (353)
T ss_dssp             SS
T ss_pred             ec
Confidence            43

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.38  E-value=8.1  Score=33.22  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=31.7

Q ss_pred             CCCeEEEEEeCCCeEEEEeCCCCCceeeeecCCCeEE--EEEcCCCCE
Q 018806          223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI--LKWSPTGDY  268 (350)
Q Consensus       223 ~g~~l~~~~~d~g~i~iwd~~~~~~~~~~~~~~~v~~--~~~sp~g~~  268 (350)
                      .|..+++++.| |.++.+|.++|+.+........+..  +.|..+|++
T Consensus       487 agglVF~G~~d-g~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         487 AGNVVFQGTAD-GRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             TTTEEEEECTT-SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCCEEEEECCC-CeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            56677778888 7999999999998765544333222  556668874

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.75  E-value=8.6  Score=31.08  Aligned_cols=96  Identities=5%  Similarity=-0.087  Sum_probs=66.5

Q ss_pred             ceeeEEECCCCCeEEEEEeCCCeEEEEeCCCCCcee-eeecCCCeEEEEEcCCCCEEEEEecCCeEEEEeCCCCceeccc
Q 018806          214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS  292 (350)
Q Consensus       214 ~v~~~~~sp~g~~l~~~~~d~g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~iwd~~~~~~~~~~  292 (350)
                      .|..++|+-+  .|+.. .+ +.+..++...-.... ......++..+.++|.  .++....++.+.++++..++...+.
T Consensus        88 ~v~~vafs~d--~l~v~-~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TR-NALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ES-SEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eC-CCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc
Confidence            5888999754  45554 44 478888877643332 2233467888888876  4666677899999999988764332


Q ss_pred             ------cCCCCeEEEEEcCCCCEEEEEEC
Q 018806          293 ------STSGFVTGATWDPEGRMILLAFA  315 (350)
Q Consensus       293 ------~~~~~v~~~~~s~~g~~l~~~~~  315 (350)
                            .-.+.+.+++|++.|+.++++.+
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence                  22466889999999999987743