Citrus Sinensis ID: 018812

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGAPPGAVAQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAVAQATRRGFSFNNRYKESISKSTRGWKERLFSRNASMPGTGSENRSENVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNSENNTETRGENPVNNETPPSCAASSFSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEcccccccccHHHcccHHHHHccccccccccccccEHHccccccccEEcccccHHHHHHHHHHHHHcccccccccEEEcccccHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mevlgmeegkkpedhmTSAAAFVeggiqdscDDACSICleefsesdpstvtsckheFHLQCVLEWCqrssqcpmcwqpislkdaTSQELLEAVEQERsiranpprnatifhhptfgdfelqhlpvgasdtdLEEHILQHLTAAAAMGrahhfgrreshrnrsaahgrphffvfsahpggappgavaqgggtepaplagaspsvplsssgndssqhmlqfhpiqtnqnsssasgSAVAQATRRGFSFNNRYKESISKSTRGWKERLFsrnasmpgtgsenrsenvgiTSVSRLMEQlgtgestrgseasvsshmanplvteqnsenntetrgenpvnnetppscaassfsr
Flexible Loop (DISEMBL)
mevlgmeegkkpedHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGAPPGAVAQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAVAQAtrrgfsfnnrykesiskstrgwkerlfsrnasmpgtgsenrsenvgITSVSRLMEQLGTGESTRGSEASVSSHMAnplvteqnsenntetrgenpvnnetppscaassfsr
Low Complexity Region (SEG)
MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHpggappgavaqgggTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNsssasgsavaqaTRRGFSFNNRYKESISKSTRGWKERLFSRNASMPGTGSENRSENVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNSENNTETRGENPVNNETPPSCAASSFSR
Disordered region (IsUnstruct)
********************AFVEGGIQDSCDDACSICLEEFSE**PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD***********************ATIFHHPTFGDFELQHLPVGASDTDLEEHILQHLTAAAAMG**********************FFVF*********************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*******************************DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL*****************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**************HMTSAAAFVEGGIQDSCDDACSICLEEF***********KHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQHLTAAAAMG****************AHGRPHFFVFSAHPGGAPPGAVAQGGGTE*********************QHMLQFHPIQ****************TRRGFSFNNRYKESISKSTRGWKERLFSRNA************NVGITSVSRLMEQL*****************ANPLVTE******************************
Disordered Region (DISPRO)
******************************CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQHLTAAAAMGR**H***************RPHF****A***************************************************************************K**IS*STRGWKER**************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGAPPGAVAQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAVAQATRRGFSFNNRYKESISKSTRGWKERLFSRNASMPGTGSENRSENVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNSENNTETRGENPVNNETPPSCAASSFSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9ZT42	375	E3 ubiquitin-protein liga	yes	no	0.982	0.917	0.514	3e-90
Q4TU14	371	E3 ubiquitin-protein liga	no	no	0.822	0.776	0.361	1e-33
Q8LE94	231	E3 ubiquitin-protein liga	no	no	0.125	0.190	0.5	1e-08
Q68DV7	783	E3 ubiquitin-protein liga	yes	no	0.171	0.076	0.483	1e-07
Q5NCP0	784	E3 ubiquitin-protein liga	yes	no	0.194	0.086	0.426	5e-07
Q9VE61	147	E3 ubiquitin-protein liga	yes	no	0.174	0.414	0.363	1e-06
Q7TMV1	668	E3 ubiquitin-protein liga	no	no	0.168	0.088	0.360	1e-06
Q9DBU5	667	E3 ubiquitin-protein liga	no	no	0.197	0.103	0.275	2e-06
Q9LQM2	332	RING-H2 finger protein AT	no	no	0.18	0.189	0.359	2e-06
Q9XF63	324	RING-H2 finger protein AT	no	no	0.137	0.148	0.450	4e-06

>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1

 Score =  332 bits (851), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/373 (51%), Positives = 234/373 (62%), Gaps = 29/373 (7%)

Query: 5   GMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLE 64
           G  E    E H+TSAAAFVEGGIQD+CDDACSICLE F ESDPST+TSCKHE+HLQC+LE
Sbjct: 3   GAGETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILE 62

Query: 65  WCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLP 124
           WCQRSSQCPMCWQ ISLKD TSQELLEAVEQER+ R NP RNATIF HPT GDFELQHLP
Sbjct: 63  WCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHLP 122

Query: 125 VGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGA---- 180
           VG  + ++EE I+QHL AAAAMGRA H  RRE HR+RS++ G   F VFS+ P  +    
Sbjct: 123 VGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSSQPNASSPPP 182

Query: 181 --------------------PPGAVAQGG-GTEPAPLAGASPSVPLSSSGNDSSQHMLQF 219
                               P  A+ +G   +   P   + P     S+ + +S+ + Q 
Sbjct: 183 HPPMPSSPSQRDESDTVSNLPHNALGEGSHQSNTQPPTSSHPRQVSPSASDSNSRPLNQS 242

Query: 220 HPIQTNQNSSSASGSAVAQATRRGFSFNNRYKESISKSTRGWKERLFSRNASMPGTGSEN 279
            P + ++   S   S       R  + + RYKESISK+TR WK+RLFSRN SM   GSE 
Sbjct: 243 SPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEV 302

Query: 280 RSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNSENNTETRGENPVNNE 338
           + E + GI +VSR+ME+L T E++R S ASVS    N    E N+E+N    G+    NE
Sbjct: 303 KREVSAGIATVSRMMERLETRENSRPSTASVSDVSENH-TPETNNEHNRAAAGDEHSVNE 361

Query: 339 --TPPSCAASSFS 349
                +CA  S S
Sbjct: 362 RGVKETCATGSGS 374

Probable E3 ubiquitin-protein ligase involved in the positive regulation of the gametogenesis progression. Required for the degradation of KRP6, a cyclin-dependent kinase inhibitor which accumulates during meiosis and blocks the progression of subsequent mitoses during gametophytes development. Functions in association with RHF1A.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 162/310 (52%), Gaps = 22/310 (7%)

Query: 20  AAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
           A  V     ++ DDACSICLE F+  DPSTVTSCKHE+HLQC++EW QRS +CP+CWQ  
Sbjct: 31  ALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLF 90

Query: 80  SLKDATSQELLEAVEQERSIRA-NPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQ 138
            L+D  SQELL AVE+ER ++  N   ++ I  H +  DF  +      S  D  E  L+
Sbjct: 91  VLRDPASQELLAAVEKERLLKTRNISSSSPISIHHSHDDFHSEEEESQFSSFD--EQFLR 148

Query: 139 HLTAAAAMGRAHHFGRRESH--------RNRSAAH--GRPHFFVFSA--HPGGAPPGAVA 186
           HLT AA   R     RR+           + +  H     + +  SA  H          
Sbjct: 149 HLTEAA--HRRCLLRRRDGQISSSLVSSSDPTTIHPTDLVNLYRLSAISHVEHQNSNPCP 206

Query: 187 QGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAVAQATRRGF-S 245
             G   P+P++G S S+P  S  N+ S+      P +++Q+  S   S++ +A +    +
Sbjct: 207 SPGSMTPSPVSGHS-SIPADS--NNGSRISPGPSPSRSSQSPKSPEASSLPEAIKSKLAA 263

Query: 246 FNNRYKESISKSTRGWKERLFSRNASMPG-TGSENRSENVGITSVSRLMEQLGTGESTRG 304
            + +YKESISKS +G KE+L +RN S+   +    R  N GI  V+R++E++       G
Sbjct: 264 ASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFG 323

Query: 305 SEASVSSHMA 314
             A VS+  A
Sbjct: 324 GSAHVSTSTA 333

E3 ubiquitin-protein ligase involved in the positive regulation of the gametogenesis progression. Mediates the proteasomal degradation of KRP6, a cyclin-dependent kinase inhibitor which accumulates during meiosis and blocks the progression of subsequent mitoses during gametophyte development. Functions in association with RHF2A. Possesses E3 ubiquitin ligase activity in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 32  DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
           +D C  CLEE++  +P  VT C H FHL C+ EW +RS  CP+C
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVC 221

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 30  SCDDA--CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQ 87
           SC  A  C+ICLEEFSE     V SC HEFH  CV  W  +   CP+C   I+  D+ SQ
Sbjct: 265 SCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQ 324

Query: 88  EL 89
            L
Sbjct: 325 SL 326

Probable E3 ubiquitin-protein ligase. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 35/68 (51%)

Query: 20  AAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
           A + + G   S    C+ICLEEFSE     V SC HEFH  CV  W  +   CP+C   I
Sbjct: 257 AEWPDSGSSCSSTPVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNI 316

Query: 80  SLKDATSQ 87
              D+ SQ
Sbjct: 317 VEGDSFSQ 324

Probable E3 ubiquitin-protein ligase. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Mus musculus (taxid: 10090)

>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 24  EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
           EGG     D  CS+C E   E     +  CKHEFH +C+L W ++++ CP+C   +   D
Sbjct: 64  EGG-----DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDD 118

Query: 84  ATSQEL 89
              +EL
Sbjct: 119 PVYEEL 124

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 23  VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82
           ++G      DD C+IC  EF+ S  + +T C H FH  C+ +W      CPMC Q + ++
Sbjct: 535 IKGSHLQEIDDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592

Query: 83  D 83
           D
Sbjct: 593 D 593

E3-ubiquitin ligase; acts as a negative regulator of the cell proliferation through mechanisms involving G2/M arrest and cell death. Required for MHC class I ubiquitination in cells expressing the cytomegalovirus protein US2 before dislocation from the endoplasmic reticulum (ER). Affects SREBP processing by hindering the SREBP/SCAP complex translocation from the ER to the Golgi, thereby reducing SREBF2 target gene expression. Required for INSIG1 ubiquitination. May be required for EIF3 complex ubiquitination. May function as a signaling receptor.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 18  SAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77
           S  ++ + G+       CS+C+ ++   +      C HEFH+ C+  W   +  CP+C +
Sbjct: 597 STRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRR 656

Query: 78  PISLKDATS 86
           P+    ATS
Sbjct: 657 PVLEFGATS 665

E3 ubiquitin-protein ligase mediating 'Lys-48'-linked polyubiquitination of LIMK1 and its subsequent targeting to the proteasome for degradation. Negatively regulates axonal outgrowth through regulation of the LIMK1 turnover. Mediates 'Lys-6' and 'Lys-27'-linked polyubiquitination of AR/androgen receptor thereby modulating its transcriptional activity. May also bind DNA and function as a transcriptional regulator.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 26  GIQDSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84
            ++D   D CSICL EF + D    +++C H FH  C+  W +    CP+C + + ++D 
Sbjct: 145 SVKDHGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDR 204

Query: 85  TSQE 88
           TS E
Sbjct: 205 TSLE 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 28  QDSCDDA--CSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMC 75
           QDSC D   CSICL E  + D + +   C H FH++C+  W Q  S CP+C
Sbjct: 118 QDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPIC 168

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
359481051	387	PREDICTED: E3 ubiquitin-protein ligase R	0.982	0.888	0.611	1e-121
224091469	389	predicted protein [Populus trichocarpa]	0.985	0.886	0.594	1e-118
224138254	387	predicted protein [Populus trichocarpa]	0.957	0.865	0.587	1e-117
296089345	391	unnamed protein product [Vitis vinifera]	0.877	0.785	0.613	1e-110
356500563	380	PREDICTED: E3 ubiquitin-protein ligase R	0.98	0.902	0.571	1e-110
255566215	378	protein binding protein, putative [Ricin	0.94	0.870	0.584	1e-110
255638511	380	unknown [Glycine max]	0.98	0.902	0.565	1e-109
356550038	398	PREDICTED: E3 ubiquitin-protein ligase R	0.985	0.866	0.556	1e-105
225436087	393	PREDICTED: E3 ubiquitin-protein ligase R	0.991	0.882	0.553	1e-104
449521707	371	PREDICTED: E3 ubiquitin-protein ligase R	0.951	0.897	0.569	1e-104

>gi|359481051|ref|XP_002270570.2| PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Vitis vinifera]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/391 (61%), Positives = 277/391 (70%), Gaps = 47/391 (12%)

Query: 1   MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQ 60
           MEV GMEE K  E+HMTSAAAFVEGG+Q++CDDACSICLE F +SDPST+TSCKHEFHLQ
Sbjct: 1   MEVEGMEEVKNSENHMTSAAAFVEGGVQEACDDACSICLEAFCDSDPSTLTSCKHEFHLQ 60

Query: 61  CVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFEL 120
           C+LEWCQRSSQCPMCWQ ISLKD TSQELLEAVE+ER+IR  PPR+A IFHHPT GDFEL
Sbjct: 61  CILEWCQRSSQCPMCWQSISLKDPTSQELLEAVERERNIRLTPPRSA-IFHHPTLGDFEL 119

Query: 121 QHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPG-- 178
           QHLPVG +D +LEE I+QHL AAAAMGRAHH  RRE  R+RS+AHGR HF VFS HP   
Sbjct: 120 QHLPVGTNDPELEERIIQHLAAAAAMGRAHHIARREGQRSRSSAHGRSHFLVFSTHPNAT 179

Query: 179 --GAPPGAVAQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAV 236
             G  P ++ Q G  EPA +  ASPS+PL + G++ SQ + QF  +QT+  S+SAS SAV
Sbjct: 180 ASGPVPASLVQVGENEPAAITVASPSIPLPAGGDEPSQEIPQFPSVQTDHMSASASRSAV 239

Query: 237 AQATRRGFSFNN------------------------------------RYKESISKSTRG 260
              T R  SFNN                                    RYKESISKSTRG
Sbjct: 240 ---TPRRISFNNRSSASQSSPPDQDRAGPSELQSFSESLKSRLNAVSMRYKESISKSTRG 296

Query: 261 WKERLFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVT 319
           WKERLFSRN SM   GSE R E N GI SVSR+ME+L T E+    +ASVSSH+A+  VT
Sbjct: 297 WKERLFSRNNSMADLGSEVRREVNAGIASVSRMMERLDTRENNGAGQASVSSHLADS-VT 355

Query: 320 EQNSENNTETRGENPVNN-ETPPSCAASSFS 349
           EQ+++N  ETR ENP+N+  TP +CAASS S
Sbjct: 356 EQSNQNERETRAENPLNDSNTPAACAASSGS 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091469|ref|XP_002309263.1| predicted protein [Populus trichocarpa] gi|222855239|gb|EEE92786.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/392 (59%), Positives = 273/392 (69%), Gaps = 47/392 (11%)

Query: 1   MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQ 60
           MEVL ++E KKPE HMTSAAAFVEGGIQ+SCDDACSICLE+F ESDPSTVT+CKHEFHLQ
Sbjct: 1   MEVLEVDEAKKPEVHMTSAAAFVEGGIQESCDDACSICLEDFCESDPSTVTNCKHEFHLQ 60

Query: 61  CVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFEL 120
           C+LEWCQRSS+CPMC + ISLKD TSQEL EAVE+ER IRA P RNATIFHHPT GDFEL
Sbjct: 61  CILEWCQRSSECPMCLRSISLKDPTSQELFEAVERERKIRAAPSRNATIFHHPTLGDFEL 120

Query: 121 QHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGA 180
           QHLPVG SD++LEE I+QHL AAAAMGR  HFGR    RNRS+ HGRPHF VFS HPG  
Sbjct: 121 QHLPVGVSDSELEERIIQHLAAAAAMGRTGHFGRGGGQRNRSSPHGRPHFLVFSTHPGAQ 180

Query: 181 PPGAVAQ-----GGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSA 235
           P G V+      G   EPA  + ASPS PL+S  ++ SQ  LQ  PI T+Q SSSASGS 
Sbjct: 181 PSGHVSSSLSQLGRENEPAAGSVASPSTPLTSVEDEPSQQTLQLPPILTDQ-SSSASGST 239

Query: 236 VAQATRRGFSFNNR------------------------------------YKESISKSTR 259
           V    R+G SFNNR                                    YKESIS+STR
Sbjct: 240 V---MRQGLSFNNRSTSSQSAPPNQDRAGPSEFQSFSVSLKSRLNAVSMRYKESISRSTR 296

Query: 260 GWKERLFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLV 318
           GWK+RLFSRN+S+   GSE R + N GI +VSR+ME+L T +++  ++ SVS+H  +   
Sbjct: 297 GWKDRLFSRNSSVSDLGSEVRRDVNAGIATVSRMMERLETRDNSGANQVSVSTHWTDRPA 356

Query: 319 TEQNSENNTETRGENPVNN-ETPPSCAASSFS 349
            E++++NN ET  E+PVN   TP SCAASS S
Sbjct: 357 AERSNQNNAETHIESPVNEGSTPVSCAASSAS 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138254|ref|XP_002322768.1| predicted protein [Populus trichocarpa] gi|222867398|gb|EEF04529.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/378 (58%), Positives = 261/378 (69%), Gaps = 43/378 (11%)

Query: 6   MEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65
           M+E KKPE HMTSAAAFVEGGIQDSCDDACSICLEEF ESDPSTVT+CKHEFHLQC+LEW
Sbjct: 1   MDEAKKPEVHMTSAAAFVEGGIQDSCDDACSICLEEFCESDPSTVTNCKHEFHLQCILEW 60

Query: 66  CQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPV 125
           CQRSS+CPMC Q ISLKD TSQEL EAVE+ER IRA P RNATIFHHPT GDFELQHLPV
Sbjct: 61  CQRSSECPMCLQSISLKDPTSQELFEAVERERKIRAAPSRNATIFHHPTLGDFELQHLPV 120

Query: 126 GASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGAPPGAV 185
           G SD++LEE I+QHL AAAAMGR  HFGRRE  RNR+++HGRPHF VFS HPG  P G V
Sbjct: 121 GVSDSELEERIIQHLAAAAAMGRTRHFGRREGQRNRTSSHGRPHFLVFSTHPGAQPSGHV 180

Query: 186 AQ-----GGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAVAQAT 240
           +      GG  EPAP++ ASPS  L+S G++  Q  LQ   + T+Q SSSASGS    A 
Sbjct: 181 SSSLTQLGGENEPAPVSVASPSTQLTSVGDEPPQQALQSPSVLTDQ-SSSASGSTAMPAN 239

Query: 241 RRGFSFNNR------------------------------------YKESISKSTRGWKER 264
            +G SFNNR                                    YKESIS+STRGWKER
Sbjct: 240 NQGVSFNNRSASSQSSLPNQDRAGPSELQSFSESLKSRLNAVSMRYKESISRSTRGWKER 299

Query: 265 LFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNS 323
           LFSRN+SM    S+ R E N GI +VSR+ME+L T +    ++ SVS+H+ +    E+++
Sbjct: 300 LFSRNSSMSDISSDVRREVNAGIATVSRMMERLETRDDGGDNQVSVSNHLTDRSNVERSN 359

Query: 324 ENNTETRGENPVNNETPP 341
           +N   T  E+P+N  + P
Sbjct: 360 QNTAATHIESPLNEGSTP 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089345|emb|CBI39117.3| unnamed protein product [Vitis vinifera]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 247/352 (70%), Gaps = 45/352 (12%)

Query: 1   MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQ 60
           MEV GMEE K  E+HMTSAAAFVEGG+Q++CDDACSICLE F +SDPST+TSCKHEFHLQ
Sbjct: 1   MEVEGMEEVKNSENHMTSAAAFVEGGVQEACDDACSICLEAFCDSDPSTLTSCKHEFHLQ 60

Query: 61  CVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFEL 120
           C+LEWCQRSSQCPMCWQ ISLKD TSQELLEAVE+ER+IR  PPR+A IFHHPT GDFEL
Sbjct: 61  CILEWCQRSSQCPMCWQSISLKDPTSQELLEAVERERNIRLTPPRSA-IFHHPTLGDFEL 119

Query: 121 QHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPG-- 178
           QHLPVG +D +LEE I+QHL AAAAMGRAHH  RRE  R+RS+AHGR HF VFS HP   
Sbjct: 120 QHLPVGTNDPELEERIIQHLAAAAAMGRAHHIARREGQRSRSSAHGRSHFLVFSTHPNAT 179

Query: 179 --GAPPGAVAQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAV 236
             G  P ++ Q G  EPA +  ASPS+PL + G++ SQ + QF  +QT+  S+SAS SAV
Sbjct: 180 ASGPVPASLVQVGENEPAAITVASPSIPLPAGGDEPSQEIPQFPSVQTDHMSASASRSAV 239

Query: 237 AQATRRGFSFNNR------------------------------------YKESISKSTRG 260
              T R  SFNNR                                    YKESISKSTRG
Sbjct: 240 ---TPRRISFNNRSSASQSSPPDQDRAGPSELQSFSESLKSRLNAVSMRYKESISKSTRG 296

Query: 261 WKERLFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSS 311
           WKERLFSRN SM   GSE R E N GI SVSR+ME+L T E+    +ASVS+
Sbjct: 297 WKERLFSRNNSMADLGSEVRREVNAGIASVSRMMERLDTRENNGAGQASVST 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500563|ref|XP_003519101.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/387 (57%), Positives = 264/387 (68%), Gaps = 44/387 (11%)

Query: 1   MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQ 60
           MEV  ME   K E HMTSAAAFVEGG+Q++CDDACSICLE+F +SDP+TVT+CKHEFHLQ
Sbjct: 1   MEVPEME--GKTESHMTSAAAFVEGGVQEACDDACSICLEDFCKSDPATVTNCKHEFHLQ 58

Query: 61  CVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFEL 120
           C+LEWCQRSSQCPMCWQPISL+DATSQELLEAVE ERS+R  P RNA IFHHPT GDFEL
Sbjct: 59  CILEWCQRSSQCPMCWQPISLRDATSQELLEAVELERSLRDTPSRNAAIFHHPTLGDFEL 118

Query: 121 QHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGA 180
           QHLP+G ++ D+EE I+QHLTAAAAM R+HH  RRE HR R +AHGRPHF V+S  P  A
Sbjct: 119 QHLPMGVNEADIEERIIQHLTAAAAMRRSHHLSRREGHRTRPSAHGRPHFLVYSTQP-SA 177

Query: 181 PPGAVAQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAV---- 236
           PP A   GGG+EPA +   SPS PL+  GN+  Q  LQ  P    Q+SS  S S V    
Sbjct: 178 PPSAA--GGGSEPAAIPVGSPSTPLTFDGNE--QSSLQQIPHVQTQSSSLTSASTVSTTN 233

Query: 237 ----------------------AQATRRGFS------FNN---RYKESISKSTRGWKERL 265
                                 AQ + + FS      FN    RYK+SISK TRGWKERL
Sbjct: 234 LQGVHSDDRSFASHSFPASQDRAQPSEQSFSDSLRSRFNAVSMRYKDSISKGTRGWKERL 293

Query: 266 FSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNSE 324
           FS N+SM   GSE R E N  I SVSRLME+L T E+   +  S+S+H+ N  + E +++
Sbjct: 294 FSPNSSMSELGSEVRRELNAKIASVSRLMERLETRENNSAAGTSLSNHLVNRSIAETSNQ 353

Query: 325 NNTETRGENPVN-NETPPSCAASSFSR 350
           +N E RGEN ++ N TP + +ASS S+
Sbjct: 354 SNVEARGENSLHGNNTPTTFSASSDSK 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566215|ref|XP_002524095.1| protein binding protein, putative [Ricinus communis] gi|223536663|gb|EEF38305.1| protein binding protein, putative [Ricinus communis]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/380 (58%), Positives = 255/380 (67%), Gaps = 51/380 (13%)

Query: 1   MEVLGMEEGKKPED-HMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHL 59
           MEVLG+EE KKPE  HM SAAAFVEGGIQ+SCDDACSICLEEF ESDPSTVT+CKHE+HL
Sbjct: 1   MEVLGVEEAKKPETTHMASAAAFVEGGIQESCDDACSICLEEFCESDPSTVTNCKHEYHL 60

Query: 60  QCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFE 119
           QC+LEWCQRSS CPMC QPISLKD +SQEL EAVE+ER  RA P RNATIF HPT GDFE
Sbjct: 61  QCILEWCQRSSDCPMCLQPISLKDPSSQELFEAVERERKFRAAPSRNATIFRHPTLGDFE 120

Query: 120 LQHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGG 179
           LQHLPVGASD+DLEE I+QHL AAAAMGR HHFGRRE HRNR ++HGRPHF VFS HP  
Sbjct: 121 LQHLPVGASDSDLEERIIQHLAAAAAMGRGHHFGRREGHRNRQSSHGRPHFLVFSTHPSA 180

Query: 180 APPGAVAQ-----GGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGS 234
              G V+      GG  E A     SPSVPL+  GN S         +  +Q SSSASGS
Sbjct: 181 PSSGHVSSSLAQVGGENEQASDTVTSPSVPLAYRGNVS---------VVMDQ-SSSASGS 230

Query: 235 AVAQATRRG-----------------------FS---------FNNRYKESISKSTRGWK 262
            V     +G                       FS          + RYKE IS+STRGWK
Sbjct: 231 TVMPINNQGDRSSSSHSPPSNQDRAGPSEFQSFSDSLKSRLNAMSMRYKE-ISRSTRGWK 289

Query: 263 ERLFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQ 321
           ERLFSRN+SM   GSE R E N GITSVSR+ME+L T +++  +  SVS+   +  V E+
Sbjct: 290 ERLFSRNSSMSDIGSEVRREVNAGITSVSRMMERLETRDNSTANHVSVSTQ-TDYSVAER 348

Query: 322 NSENNTETRGENPVNNETPP 341
           +++NN  TR E+P+     P
Sbjct: 349 SNQNNVNTRRESPLGESNTP 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638511|gb|ACU19564.1| unknown [Glycine max]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/387 (56%), Positives = 263/387 (67%), Gaps = 44/387 (11%)

Query: 1   MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQ 60
           MEV  ME   K E H+TS AAFVEGG+Q++CDDACSICLE+F +SDP+TVT+CKHEFHLQ
Sbjct: 1   MEVPEME--GKTESHLTSTAAFVEGGVQEACDDACSICLEDFCKSDPATVTNCKHEFHLQ 58

Query: 61  CVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFEL 120
           C+LEWCQRSSQCPMCWQPISL+DATSQELLEAVE ERS+R  P RNA IFHHPT GDFEL
Sbjct: 59  CILEWCQRSSQCPMCWQPISLRDATSQELLEAVELERSLRDTPSRNAAIFHHPTLGDFEL 118

Query: 121 QHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGA 180
           QHLP+G ++ D+EE I+QHLTAAAAM R+HH  RRE HR R +AHGRPHF V+S  P  A
Sbjct: 119 QHLPMGVNEADIEERIIQHLTAAAAMRRSHHLSRREGHRTRPSAHGRPHFLVYSTQP-SA 177

Query: 181 PPGAVAQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAV---- 236
           PP A   GGG+EPA +   SPS PL+  GN+  Q  LQ  P    Q+SS  S S V    
Sbjct: 178 PPSAA--GGGSEPAAIPVGSPSTPLTFDGNE--QSSLQQIPHVQTQSSSLTSASTVSTTN 233

Query: 237 ----------------------AQATRRGFS------FNN---RYKESISKSTRGWKERL 265
                                 AQ + + FS      FN    RYK+SISK TRGWKERL
Sbjct: 234 LQGVHSDDRSFASHSFPASQDRAQPSEQSFSDSLRSRFNAVSMRYKDSISKGTRGWKERL 293

Query: 266 FSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNSE 324
           FS N+SM   GSE R E N  I SVSRLME+L T E+   +  S+S+H+ N  + E +++
Sbjct: 294 FSPNSSMSELGSEVRRELNAKIASVSRLMERLETRENNSAAGTSLSNHLVNRSIAETSNQ 353

Query: 325 NNTETRGENPVN-NETPPSCAASSFSR 350
           +N E RGEN ++ N TP + +ASS S+
Sbjct: 354 SNVEARGENSLHGNNTPTTFSASSDSK 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550038|ref|XP_003543397.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/401 (55%), Positives = 253/401 (63%), Gaps = 56/401 (13%)

Query: 1   MEVLGMEEGK------KPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCK 54
           ME  GMEE        K E H+TSAAAFVEGGIQD+CDDACSICLE F +SDPSTVTSCK
Sbjct: 1   MEGAGMEENNIINDDNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCK 60

Query: 55  HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPT 114
           HEFHLQC+LEWCQRSSQCPMCWQPISLKD TSQELLEAVE+ER+ R NP RNATIFHHPT
Sbjct: 61  HEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPT 120

Query: 115 FGDFELQHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFS 174
            GDFELQHLPVGASD DLEE I+QHL AAAAMGRA H  RRE  RNRS+A GR HF VFS
Sbjct: 121 LGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHVARREGQRNRSSAQGRQHFLVFS 180

Query: 175 AHPGGAPPGAVA-----QGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSS 229
            HP  +PP A A     Q G  EP P    +   P  ++G +SSQ  L   P+Q  Q S+
Sbjct: 181 THPN-SPPMAPASSSPSQRGDDEPTPTIDVANLSPTPATGEESSQPTL-VSPVQAEQVSA 238

Query: 230 SASGSAVAQATRRGFSFNNR------------------------------------YKES 253
           S SG+       +G S+NNR                                    YKES
Sbjct: 239 SGSGTTALATDHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKES 298

Query: 254 ISKSTRGWKERLFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSH 312
           ISKSTRGWKER FSRN +M   GSE R E N GI +VSR+ME+L T ++ R +  S  S+
Sbjct: 299 ISKSTRGWKERWFSRNNTMSDLGSEVRREVNAGIATVSRMMERLETRDNNRSNSNSAPSN 358

Query: 313 MANPLVTEQNSENNTETRGEN----PVNNETPPSCAASSFS 349
           + +  V  Q S + T T G        +N T  SCAA S S
Sbjct: 359 IEDGSV--QGSNDQTLTAGNEGGSLVRDNNTKASCAAGSSS 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436087|ref|XP_002277399.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A [Vitis vinifera] gi|296084011|emb|CBI24399.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/390 (55%), Positives = 250/390 (64%), Gaps = 43/390 (11%)

Query: 1   MEVLGMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQ 60
           ME  GMEE  K E H+TSAAAFVEGGIQ++CDDACSICLE F +SDPSTVTSCKHEFHLQ
Sbjct: 1   MEAPGMEESNKSECHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQ 60

Query: 61  CVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFEL 120
           C+LEWCQRSSQCPMCWQPISLKD TSQELLEAVE+ER+ R NP RNATIFHHPT GDFEL
Sbjct: 61  CILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERTFRFNPSRNATIFHHPTLGDFEL 120

Query: 121 QHLPVGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHP--- 177
           QHLPVGA+D +LEE I+QHL AAAAMGRA H  RRE  R RS+A GRP F VFSAHP   
Sbjct: 121 QHLPVGANDAELEERIIQHLAAAAAMGRARHIARREGQRTRSSAQGRPQFLVFSAHPSTP 180

Query: 178 -GGAPPGAVAQGGGTEPAP-LAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSA 235
             G    + AQ G  EPAP +  A PS   ++ G +SS+        Q  + ++SASGS 
Sbjct: 181 QAGPASSSPAQRGEDEPAPAITAAMPSSLPTAVGEESSRLTTSQLSSQAEEITASASGSI 240

Query: 236 VAQATRRGFSFNNR------------------------------------YKESISKSTR 259
           +    + G S NNR                                    YKESISKSTR
Sbjct: 241 IHTTNQHGTSSNNRRSPGQSLPSGQDKAGPSEFQSFSETLKSRFNAVSMRYKESISKSTR 300

Query: 260 GWKERLFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLV 318
           GWKERLFSRN SM   GS+ R E N GI +VSR+ME L T +++R + +SVS    +   
Sbjct: 301 GWKERLFSRNTSMADIGSDVRREVNAGIATVSRMMEHLETRDNSRTTPSSVSDSSEDTSS 360

Query: 319 TEQNSENNTETRGENPV-NNETPPSCAASS 347
                +   ET   NP+ +     SCAASS
Sbjct: 361 PSLGDQRMAETSAHNPLGDTNVQASCAASS 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521707|ref|XP_004167871.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Cucumis sativus]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/383 (56%), Positives = 256/383 (66%), Gaps = 50/383 (13%)

Query: 6   MEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65
           MEE K  E+ +TSAAAFVEGGIQ++CDDACSICLE+F ESDPSTVT+CKHEFHLQC+LEW
Sbjct: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60

Query: 66  CQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPV 125
           CQRSSQCPMCWQ ISLKD TSQELLEAVE+ER+IRA P RN  +FHHP  G+FELQHLP+
Sbjct: 61  CQRSSQCPMCWQSISLKDPTSQELLEAVERERNIRATPVRNTAVFHHPALGNFELQHLPL 120

Query: 126 GASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGAPPGAV 185
           G ++ +LEE I+QHL AAAAMGR HH GRRE  R+RS++HGRPHF VFS HPGG P    
Sbjct: 121 GVNNAELEERIIQHLAAAAAMGRTHHIGRREG-RSRSSSHGRPHFLVFSTHPGGPPEHVS 179

Query: 186 AQGGGTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNSSSASGSAVAQATRRGFS 245
           A G  TEPA +  ASPS PL+  G++ SQH+ QF  IQT+  S SASGS  + A+RRG S
Sbjct: 180 ASGVHTEPAGITVASPSSPLTPRGDEPSQHIAQFPSIQTDHVSRSASGSNFS-ASRRGAS 238

Query: 246 ------------------------------------FNNRYKESISKSTRGWKERLFSRN 269
                                                + RYKESISKSTRGWKERLFSRN
Sbjct: 239 SGIQISTSDSPSPNLDRAGPSEFQSFSESLKSRLNAVSTRYKESISKSTRGWKERLFSRN 298

Query: 270 ASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNSENNTE 328
            SM   GSE R E N GI SVSR+M++L T E    ++ S           EQ   N  E
Sbjct: 299 TSMSELGSEVRREVNAGIASVSRMMQRLETREDGVTNQGS----------NEQGGHNRRE 348

Query: 329 TRGENPVNNETPP-SCAASSFSR 350
           +  EN + + + P SCAA+S  R
Sbjct: 349 SNPENSLTDSSAPTSCAATSAER 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2129525	371	RHF1A "RING-H2 group F1A" [Ara	0.831	0.784	0.351	1.3e-36
TAIR|locus:505006415	190	RHB1A "RING-H2 finger B1A" [Ar	0.157	0.289	0.436	2.6e-11
TAIR|locus:2035843	179	AT1G14200 [Arabidopsis thalian	0.288	0.564	0.298	5.6e-10
TAIR|locus:2177881	212	AT5G41350 [Arabidopsis thalian	0.182	0.301	0.426	1e-09
TAIR|locus:2076542	231	AT3G02290 [Arabidopsis thalian	0.125	0.190	0.5	1.4e-09
TAIR|locus:2143251	232	AT5G15790 [Arabidopsis thalian	0.125	0.189	0.5	3.8e-09
ZFIN|ZDB-GENE-041114-40	149	rnf24 "ring finger protein 24"	0.171	0.402	0.360	4.3e-09
MGI|MGI:1916117	155	Rnf122 "ring finger protein 12	0.157	0.354	0.4	1.5e-08
RGD|1561238	95	RGD1561238 "similar to ring fi	0.157	0.578	0.4	1.5e-08
ZFIN|ZDB-GENE-080303-32	155	zgc:175214 "zgc:175214" [Danio	0.128	0.290	0.488	1.5e-08

TAIR|locus:2129525 RHF1A "RING-H2 group F1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 110/313 (35%), Positives = 157/313 (50%)

Query:    17 TSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76
             +S+A  V     ++ DDACSICLE F+  DPSTVTSCKHE+HLQC++EW QRS +CP+CW
Sbjct:    28 SSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICW 87

Query:    77 QPISLKDATSQELLEAVEQERSIRA-NPPRNATIFHHPTFGDFELQHLPVGASDTDLEEH 135
             Q   L+D  SQELL AVE+ER ++  N   ++ I  H +  DF  +      S  D  E 
Sbjct:    88 QLFVLRDPASQELLAAVEKERLLKTRNISSSSPISIHHSHDDFHSEEEESQFSSFD--EQ 145

Query:   136 ILQHLTAAAAMGRAHHFGRRESHRNRSAAHG------RP----HFFVFSA--HXXXXXXX 183
              L+HLT AA   R     RR+   + S           P    + +  SA  H       
Sbjct:   146 FLRHLTEAAH--RRCLLRRRDGQISSSLVSSSDPTTIHPTDLVNLYRLSAISHVEHQNSN 203

Query:   184 XXXXXXXTEPAPLAGASPSVPLSSSGNDSSQHMLQFHPIQTNQNXXXXXXXXXXXXTRRG 243
                      P+P++G S S+P  S  N+ S+      P +++Q+             +  
Sbjct:   204 PCPSPGSMTPSPVSGHS-SIPADS--NNGSRISPGPSPSRSSQSPKSPEASSLPEAIKSK 260

Query:   244 FSFNN-RYKESISKSTRGWKERLFSRNASMPGTGSE-NRSENVGITSVSRLMEQLGTGES 301
              +  + +YKESISKS +G KE+L +RN S+        R  N GI  V+R++E++     
Sbjct:   261 LAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMDFSSK 320

Query:   302 TRGSEASVSSHMA 314
               G  A VS+  A
Sbjct:   321 RFGGSAHVSTSTA 333

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009561 "megagametogenesis" evidence=IGI

GO:0010498 "proteasomal protein catabolic process" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051726 "regulation of cell cycle" evidence=IGI

GO:0055046 "microgametogenesis" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:505006415 RHB1A "RING-H2 finger B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query:    29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
             D  +D C IC E++   +P   T C+HEFHL C+LEW +RS +CP+C + +   D
Sbjct:   133 DEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2035843 AT1G14200 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 31/104 (29%), Positives = 56/104 (53%)

Query:     5 GMEEGKKP--EDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCV 62
             G ++G+ P  +  + +    V G  ++    +C+ICL+E+S+ D +    CKH+FH +CV
Sbjct:    77 GGKQGRSPALKSEVENMPRVVIGEDKEKYGGSCAICLDEWSKGDVAAEMPCKHKFHSKCV 136

Query:    63 LEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRN 106
              EW  R + CPMC   + +++   ++ +  +    SI A   RN
Sbjct:   137 EEWLGRHATCPMCRYEMPVEEVEEEKKI-GIWIGFSINAGDRRN 179

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2177881 AT5G41350 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 29/68 (42%), Positives = 38/68 (55%)

Query:     8 EGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67
             E  +  D   S A F+   I++  D  C ICLEE+   +P  V  C H FHL C+LEW +
Sbjct:   138 ESTEEIDPKLSKAVFIP--IEEEED--CPICLEEYDIENPKLVAKCDHHFHLACILEWME 193

Query:    68 RSSQCPMC 75
             RS  CP+C
Sbjct:   194 RSETCPVC 201

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2076542 AT3G02290 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query:    32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
             +D C  CLEE++  +P  VT C H FHL C+ EW +RS  CP+C
Sbjct:   178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVC 221

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2143251 AT5G15790 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query:    32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
             +D C  CLEE+   +P  VT C H FHL C+ EW +RS  CP+C
Sbjct:   179 EDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVC 222

GO:0008270 "zinc ion binding" evidence=IEA;ISS

ZFIN|ZDB-GENE-041114-40 rnf24 "ring finger protein 24" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query:    33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92
             + C++CLEEF + D   +  CKH FH +C+++W +    CP+C  P+ L+ A  Q + E 
Sbjct:    76 EICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV-LQLAQQQSMSEP 134

Query:    93 V 93
             +
Sbjct:   135 I 135

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1916117 Rnf122 "ring finger protein 122" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query:    35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQEL 89
             C++CLE+F   D   V  C+H FH +C+++W +    CPMC +PI+    TSQ +
Sbjct:    93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSI 147

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1561238 RGD1561238 "similar to ring finger protein 122 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query:    35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQEL 89
             C++CLE+F   D   V  C+H FH +C+++W +    CPMC +PI+    TSQ +
Sbjct:    33 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSI 87

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-080303-32 zgc:175214 "zgc:175214" [Danio rerio (taxid:7955)]

 Score = 135 (52.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query:    35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
             C++CLEEF   D   V  C H FH +C+L+W +  S CPMC +PI
Sbjct:    90 CAVCLEEFKTRDELGVCPCSHTFHKKCLLKWLEIRSVCPMCNKPI 134

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZT42	RHF2A_ARATH	6, ., 3, ., 2, ., -	0.5147	0.9828	0.9173	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-13
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	5e-12
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-10
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-09
smart00184	40	smart00184, RING, Ring finger	2e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	9e-08
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	1e-07
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	8e-07
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	3e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	4e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	7e-04
pfam11793	70	pfam11793, FANCL_C, FANCL C-terminal domain	8e-04

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
          C ICL+EF   +   V  C H FH +C+ +W + S+ CP+C
Sbjct: 3  CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLC 43

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 59.8 bits (145), Expect = 5e-12
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79
          C ICLEEF   +P  +  C H F   C+ +W +   + CP+C  PI
Sbjct: 2  CPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 29 DSCDDACSICLEEFSE--------SDPSTV--TSCKHEFHLQCVLEWCQRSSQCPMC 75
          D  DD C+IC   F           D   V    C H FHL C+  W +  + CP+C
Sbjct: 16 DIEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLC 72

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
          +  C ICL+     DP  +T C H F  +C+L + ++ S+CP+C
Sbjct: 2  ELECPICLDLLR--DPVVLTPCGHVFCRECILRYLKKKSKCPIC 43

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWC-QRSSQCPMC 75
          C ICLEE+ +     +  C H F   C+ +W    ++ CP+C
Sbjct: 1  CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC 75
          C ICLEE    DP T+  C H F  +C+L W +  +  CP+C
Sbjct: 1  CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 32 DDACSICLEEFSESDPS----------TVTSCKHEFHLQCVLEWCQRSS---QCPMCWQP 78
          DD C IC   F  + P               CKH FH+ C+L+W    +    CPMC Q 
Sbjct: 21 DDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCRQT 80

Query: 79 ISLKD 83
              +
Sbjct: 81 FVFAE 85

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 35  CSICLEEFSESDPSTVTSCKHEFHLQCVLEWC-QRSSQCPMCWQPI 79
           C+IC+  F ++D   V  C H FH+ CV +W    S++CP+C   I
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 13/114 (11%)

Query: 30  SCDDACSICLEEFSESDPSTVT----------SCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
           + D  C+IC++E    D   +            C H  HL C+  W +R   CP+C +P+
Sbjct: 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344

Query: 80  --SLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLPVGASDTD 131
                  T         Q  +   NP    T    P   +         AS  +
Sbjct: 345 IFDQSSPTPASPNVRNTQIATQVPNPDNTPTTTAVPGITN-SSNQGDPQASTFN 397

Length = 491

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 13/66 (19%)

Query: 33 DACSICLEEFSESDPSTVTS-------------CKHEFHLQCVLEWCQRSSQCPMCWQPI 79
          D C+IC      + P                  C H FH  C+  W      CP+  Q  
Sbjct: 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80

Query: 80 SLKDAT 85
           L D  
Sbjct: 81 VLADGG 86

Length = 88

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 29  DSCDDACSICLEEFSESDPSTV-----TSCKHEFHLQCVLEWCQRSSQCPMC 75
            S D  C+IC+E+  + +   +     ++C H F ++C+  W +  + CP+C
Sbjct: 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVC 222

Length = 238

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 35   CSIC---LEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS--SQCPMC 75
            C+IC   L+    S PS    +CK++FH +C+ +W   S  S CP+C
Sbjct: 1472 CAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLC 1518

Length = 1525

>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 16/66 (24%)

Query: 35 CSICLEEFSESDPSTVTSCKHE-----FHLQCVLEW--CQRSS---------QCPMCWQP 78
          C IC     +       SC +      FH+ C+ EW    R S          CP C   
Sbjct: 5  CGICYAYRLDGGEIPDISCDNPKCGLPFHIACLYEWLRTLRDSRQSFNVSFGTCPYCKAK 64

Query: 79 ISLKDA 84
          IS+K +
Sbjct: 65 ISVKFS 70

This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.34
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.12
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.09
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.04
PHA02929	238	N1R/p28-like protein; Provisional	99.04
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.02
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.98
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.98
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.93
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.93
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.89
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.87
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.86
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.84
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.82
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.81
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.78
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.77
PHA02926	242	zinc finger-like protein; Provisional	98.75
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.7
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.7
PF14634	44	zf-RING_5: zinc-RING finger domain	98.67
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.66
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.58
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.54
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.52
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.5
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.41
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.36
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.33
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.3
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.27
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.27
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.26
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.94
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.87
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.83
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.82
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.79
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.71
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.66
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.55
KOG2660	331	consensus Locus-specific chromosome binding protei	97.51
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.5
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.38
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.28
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.27
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.24
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.21
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.18
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.13
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.11
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.07
COG5152	259	Uncharacterized conserved protein, contains RING a	96.94
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.84
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.64
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.48
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.26
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	96.08
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.96
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.96
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.79
KOG4739	233	consensus Uncharacterized protein involved in syna	95.78
PF04641	260	Rtf2: Rtf2 RING-finger	95.56
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.54
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.47
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.33
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.31
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.28
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.21
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.04
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.88
KOG1940	276	consensus Zn-finger protein [General function pred	94.8
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.64
PHA03096	284	p28-like protein; Provisional	94.4
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	93.81
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	93.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.65
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	93.33
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	93.13
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.98
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	92.84
KOG0298	1394	consensus DEAD box-containing helicase-like transc	92.78
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.51
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.37
KOG4367	699	consensus Predicted Zn-finger protein [Function un	91.91
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	91.23
PHA02825	162	LAP/PHD finger-like protein; Provisional	91.19
KOG3002	299	consensus Zn finger protein [General function pred	90.76
PHA02862	156	5L protein; Provisional	90.68
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	89.75
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	89.0
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	88.99
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	87.4
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	86.84
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	86.39
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	85.63
COG5109	396	Uncharacterized conserved protein, contains RING Z	85.28
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	83.81
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.63
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	82.2
KOG0825	1134	consensus PHD Zn-finger protein [General function	81.57
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	81.15
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	81.08
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	80.55

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.34  E-value=4.5e-13  Score=94.25  Aligned_cols=44  Identities=43%  Similarity=1.099  Sum_probs=39.6

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW   76 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR   76 (350)
                      +.|+||++.|..++.++.++|+|.||..||..|++.+..||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999998778888999999999999999999999999997

...

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.2e-11  Score=118.94  Aligned_cols=49  Identities=35%  Similarity=0.978  Sum_probs=44.6

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL   81 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~   81 (350)
                      +.|.||+|.|..++.+++|||+|.||..||..|+.... .||+|++.+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            59999999999999999999999999999999998874 59999986654

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.09  E-value=8.7e-11  Score=91.81  Aligned_cols=46  Identities=35%  Similarity=0.988  Sum_probs=36.8

Q ss_pred             CccccccccccccC----------CCCeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812           31 CDDACSICLEEFSE----------SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW   76 (350)
Q Consensus        31 ~d~~C~ICle~f~~----------~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR   76 (350)
                      .++.|+||++.|.+          .-++.+.+|+|.||..||.+|++.+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            35569999999932          12345678999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.1e-10  Score=108.86  Aligned_cols=54  Identities=33%  Similarity=0.738  Sum_probs=44.6

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCCCcc
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLKDAT   85 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~kd~~   85 (350)
                      +.....|.||||.-++   ++++.|||.|||.||.+|++.   ++.||+|+..+..+...
T Consensus        44 ~~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv  100 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV  100 (230)
T ss_pred             CCCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence            4456799999999844   788899999999999999976   35799999988765443

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.04  E-value=1.7e-10  Score=108.95  Aligned_cols=54  Identities=28%  Similarity=0.794  Sum_probs=43.6

Q ss_pred             CCCCccccccccccccCCC-----CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           28 QDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~-----~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      ....+..|+||++.+.+..     -..+++|+|.||..||.+|+..+.+||+||..+..
T Consensus       170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            3445789999999875422     13567899999999999999999999999998763

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.02  E-value=2e-10  Score=105.05  Aligned_cols=54  Identities=30%  Similarity=0.722  Sum_probs=43.4

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----------------CCCCCCCCcCCCCCCcc
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----------------SSQCPMCWQPISLKDAT   85 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----------------s~sCPvCR~~l~~kd~~   85 (350)
                      ...+.+|+||++.+.+   +++++|||.||+.||..|+..                ...||+||..+....+.
T Consensus        15 ~~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv   84 (193)
T PLN03208         15 SGGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV   84 (193)
T ss_pred             CCCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence            3447899999999843   577899999999999999852                24799999999865543

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.7e-10  Score=109.09  Aligned_cols=54  Identities=33%  Similarity=0.850  Sum_probs=45.9

Q ss_pred             CCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812           27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD   83 (350)
Q Consensus        27 ~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd   83 (350)
                      .....+..|.||++...   .+..+||||.||+.||.+|+.....||+||..+.+..
T Consensus       234 ~i~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  234 SIPEATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             cCCCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            34444678999999973   3788999999999999999999999999999887654

>smart00504 Ubox Modified RING finger domain

Probab=98.98  E-value=7.7e-10  Score=82.53  Aligned_cols=58  Identities=17%  Similarity=0.377  Sum_probs=47.9

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA   92 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~   92 (350)
                      +..|+||++.+.+   +++++|||+||..||..|+..+..||+|+..+...++..+..+..
T Consensus         1 ~~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~   58 (63)
T smart00504        1 EFLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKS   58 (63)
T ss_pred             CcCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHH
Confidence            4689999999944   567799999999999999998889999999998777665544433

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.93  E-value=8.2e-10  Score=79.73  Aligned_cols=47  Identities=34%  Similarity=0.822  Sum_probs=40.0

Q ss_pred             CccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      ++..|.||++.+.+   +.+++|+|. ||..|+..|+.....||+||+++.
T Consensus         1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            36799999999744   788899999 999999999999999999999875

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.93  E-value=6.1e-10  Score=76.51  Aligned_cols=39  Identities=41%  Similarity=1.144  Sum_probs=33.3

Q ss_pred             cccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCC
Q 018812           35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC   75 (350)
Q Consensus        35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvC   75 (350)
                      |+||++.+  .++.++++|||.||..||..|++....||+|
T Consensus         1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999  4455789999999999999999998899998

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.89  E-value=1.3e-09  Score=87.64  Aligned_cols=52  Identities=42%  Similarity=1.013  Sum_probs=41.1

Q ss_pred             Ccccccccccccc----------CCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCC
Q 018812           31 CDDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK   82 (350)
Q Consensus        31 ~d~~C~ICle~f~----------~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~k   82 (350)
                      .|+.|.||...|.          +.-++....|+|.||.+||.+|+..   +..||+||+.+..+
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            3788999998884          1123455689999999999999975   46899999988654

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.87  E-value=1.5e-09  Score=76.32  Aligned_cols=38  Identities=32%  Similarity=0.854  Sum_probs=29.2

Q ss_pred             cccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCC
Q 018812           35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMC   75 (350)
Q Consensus        35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvC   75 (350)
                      |+||+++|.+   ++.++|||.||..||..|++..    ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999954   7778999999999999999753    469988

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=9.5e-10  Score=98.96  Aligned_cols=53  Identities=32%  Similarity=0.674  Sum_probs=44.6

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT   85 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~   85 (350)
                      -..|+|||+.+.... +.-++|||+||..||...+.....||+|++.|..+.+.
T Consensus       131 ~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFH  183 (187)
T ss_pred             ccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhe
Confidence            468999999995532 24479999999999999999999999999988877653

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.84  E-value=2.7e-09  Score=107.40  Aligned_cols=60  Identities=25%  Similarity=0.531  Sum_probs=48.6

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      .+..|+||++.|..   +++++|+|.||..||..|+.....||+|+..+....+..+..+..+
T Consensus        25 ~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i   84 (397)
T TIGR00599        25 TSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI   84 (397)
T ss_pred             cccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence            36899999999943   5678999999999999999988899999999876655555444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.82  E-value=3.8e-09  Score=72.06  Aligned_cols=44  Identities=41%  Similarity=1.090  Sum_probs=37.5

Q ss_pred             ccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCC
Q 018812           34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI   79 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l   79 (350)
                      .|+||++.+  .++..+++|+|.||..|+..|+.. ...||+|+..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  455666679999999999999987 67899998754

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.5e-09  Score=103.16  Aligned_cols=49  Identities=37%  Similarity=0.895  Sum_probs=44.6

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISL   81 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~   81 (350)
                      .+|.||++.|...+..+++||.|.||..|+..|+. -+..||+||..+++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            68999999998888899999999999999999998 56789999998864

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.3e-09  Score=104.66  Aligned_cols=52  Identities=31%  Similarity=0.881  Sum_probs=43.0

Q ss_pred             CCCcccccccccccc-CC---------CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           29 DSCDDACSICLEEFS-ES---------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        29 d~~d~~C~ICle~f~-~~---------~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      .+.|..|.||+|.+. ..         ..++.++|||.||.+|++-|++++.+||+||.++.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            345789999999842 21         12577899999999999999999999999999854

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.77  E-value=3.5e-09  Score=103.36  Aligned_cols=61  Identities=26%  Similarity=0.637  Sum_probs=53.1

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ   95 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve~   95 (350)
                      -+.|.||.++|..   +.+++|+|.||..||+.++..+..||.|+.++...++..+.++..+.+
T Consensus        23 lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~   83 (442)
T KOG0287|consen   23 LLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVK   83 (442)
T ss_pred             HHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHH
Confidence            5789999999944   788899999999999999999999999999999888877776665544

>PHA02926 zinc finger-like protein; Provisional

Probab=98.75  E-value=4.3e-09  Score=97.91  Aligned_cols=58  Identities=26%  Similarity=0.584  Sum_probs=44.2

Q ss_pred             hccCCCCCccccccccccccCC------CCeeeecCCccccHHHHHHHHhcC------CCCCCCCcCCCC
Q 018812           24 EGGIQDSCDDACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWCQRS------SQCPMCWQPISL   81 (350)
Q Consensus        24 ~g~~qd~~d~~C~ICle~f~~~------~~~~vl~CgH~FC~~CI~~Wl~~s------~sCPvCR~~l~~   81 (350)
                      +...+...|.+|+||++.+..+      ....+.+|+|.||..||..|....      ..||+||..+..
T Consensus       162 e~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        162 EDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             HHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            3444566689999999986332      124667999999999999999753      459999998764

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.70  E-value=1e-08  Score=70.65  Aligned_cols=39  Identities=44%  Similarity=1.162  Sum_probs=33.4

Q ss_pred             cccccccccCCCCeeeecCCccccHHHHHHHHh--cCCCCCCC
Q 018812           35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMC   75 (350)
Q Consensus        35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~--~s~sCPvC   75 (350)
                      |+||++.+.  ++..+++|+|.||..||..|++  ....||+|
T Consensus         1 C~iC~~~~~--~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFE--DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCS--SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCcccc--CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999983  3445899999999999999998  45679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.5e-09  Score=106.41  Aligned_cols=88  Identities=25%  Similarity=0.538  Sum_probs=65.2

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchHHHHHHHHHHhhhcCCCCCCCCcc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIF  110 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~~ll~~ve~er~~r~~ps~~a~i~  110 (350)
                      +..|+|||+++  +...+...|.|.||..||..-+.. .+.||.||+.+..+              +.++.+|.+.+.|.
T Consensus        43 ~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk--------------rsLr~Dp~fdaLis  106 (381)
T KOG0311|consen   43 QVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK--------------RSLRIDPNFDALIS  106 (381)
T ss_pred             hhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc--------------ccCCCCccHHHHHH
Confidence            67999999999  444566789999999999877765 57899999988754              45555666555554


Q ss_pred             CC-CCCCCcccccCCCCCCCchHHHH
Q 018812          111 HH-PTFGDFELQHLPVGASDTDLEEH  135 (350)
Q Consensus       111 ~~-p~~~~fe~q~l~~~~dDseleer  135 (350)
                      .. +.+..|+..++.+.+.|..+..|
T Consensus       107 ~i~~sie~~e~~q~~~~ekd~~~~~q  132 (381)
T KOG0311|consen  107 KIYPSIEEYEAPQPRFMEKDDSAQIQ  132 (381)
T ss_pred             HHhccHHHHhccchhHHhhHHHHhHH
Confidence            43 45667777777777777776666

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.67  E-value=1.6e-08  Score=71.27  Aligned_cols=44  Identities=36%  Similarity=0.870  Sum_probs=38.6

Q ss_pred             ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCc
Q 018812           34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ   77 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~   77 (350)
                      .|+||++.|.....+.+++|||.||..||..+......||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999965567899999999999999999866778999975

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=9.7e-09  Score=104.87  Aligned_cols=54  Identities=39%  Similarity=0.714  Sum_probs=44.8

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-----CCCCCCCcCCCCCCcchHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLKDATSQE   88 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-----~sCPvCR~~l~~kd~~~~~   88 (350)
                      +..|||||+....   +..+.|||+||+.||.++|...     ..||+||..|..+++.+..
T Consensus       186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            7899999999733   5667799999999999998654     4799999999998876543

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.58  E-value=7.3e-08  Score=75.12  Aligned_cols=60  Identities=18%  Similarity=0.361  Sum_probs=46.1

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      +++.|+||.+.+.+   +++++|||.|+..||..|+.. ...||+|+..+...++.++..+...
T Consensus         3 ~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~   63 (73)
T PF04564_consen    3 DEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSA   63 (73)
T ss_dssp             GGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHH
T ss_pred             cccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHH
Confidence            36799999999955   777899999999999999998 7899999999998888877655543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>smart00184 RING Ring finger

Probab=98.54  E-value=7.6e-08  Score=63.30  Aligned_cols=38  Identities=39%  Similarity=1.095  Sum_probs=32.8

Q ss_pred             cccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCC
Q 018812           35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC   75 (350)
Q Consensus        35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvC   75 (350)
                      |+||++..   ..+.+++|+|.||..|+..|+. ....||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999985   3477789999999999999998 56679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3.7e-08  Score=103.05  Aligned_cols=52  Identities=33%  Similarity=0.756  Sum_probs=43.7

Q ss_pred             CCccccccccccccCCCC--eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~--~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +.++.|+||+|.+.....  ++.++|+|.||..|+..|+++..+||+||..+..
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            347899999999954322  6778999999999999999999999999995543

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=4.9e-08  Score=92.74  Aligned_cols=50  Identities=36%  Similarity=0.830  Sum_probs=42.4

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHH-HHhcCCC-CCCCCcCCCCCCc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQRSSQ-CPMCWQPISLKDA   84 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~-Wl~~s~s-CPvCR~~l~~kd~   84 (350)
                      |..|.||++....   +..++|||.||+.||.. |-.++.. ||+||+...++..
T Consensus       215 d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         215 DYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            6789999999733   67789999999999999 9877766 9999998876643

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.41  E-value=1.5e-07  Score=74.56  Aligned_cols=36  Identities=31%  Similarity=0.700  Sum_probs=31.5

Q ss_pred             eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812           48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD   83 (350)
Q Consensus        48 ~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd   83 (350)
                      +..-.|.|.||.+||.+|+..+..||+|++++...+
T Consensus        49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~   84 (88)
T COG5194          49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD   84 (88)
T ss_pred             EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence            345689999999999999999999999999887543

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.36  E-value=2.8e-07  Score=65.24  Aligned_cols=38  Identities=42%  Similarity=0.960  Sum_probs=23.1

Q ss_pred             ccccccccc-CCCCeeeecCCccccHHHHHHHHhcC----CCCC
Q 018812           35 CSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRS----SQCP   73 (350)
Q Consensus        35 C~ICle~f~-~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCP   73 (350)
                      |+||.+ |. +..++++|+|||.||..||..|+...    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 64 34578889999999999999999853    3576

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.33  E-value=1.5e-07  Score=71.82  Aligned_cols=58  Identities=28%  Similarity=0.693  Sum_probs=29.8

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      -..|++|.+.+  +.|+.+..|.|.||..||..-+.  ..||+|..+...+|...+..+..+
T Consensus         7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~   64 (65)
T PF14835_consen    7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSM   64 (65)
T ss_dssp             TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHH
T ss_pred             hcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhcc
Confidence            36899999999  56677889999999999977543  459999999999998888776653

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.30  E-value=3.1e-07  Score=88.45  Aligned_cols=50  Identities=24%  Similarity=0.425  Sum_probs=43.6

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      -+.-+.|-||-+.|..   +..++|||.||..||+.++..+..||+||.....
T Consensus        22 LDs~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          22 LDSMLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             chhHHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            3346789999999954   7788999999999999999999999999987654

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=3.2e-07  Score=83.87  Aligned_cols=59  Identities=31%  Similarity=0.638  Sum_probs=44.0

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      .++..|+||++.|..  + .+++|+|.||..||..++.....||.||. ... .+..+..+..+
T Consensus        11 ~~~~~C~iC~~~~~~--p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~   69 (386)
T KOG2177|consen   11 QEELTCPICLEYFRE--P-VLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANL   69 (386)
T ss_pred             cccccChhhHHHhhc--C-ccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHH
Confidence            347899999999943  4 88899999999999999885568999995 222 33344444443

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2e-07  Score=73.31  Aligned_cols=52  Identities=38%  Similarity=0.893  Sum_probs=38.9

Q ss_pred             Ccccccccccccc----------CCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCC
Q 018812           31 CDDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK   82 (350)
Q Consensus        31 ~d~~C~ICle~f~----------~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~k   82 (350)
                      .+++|-||.-.|.          +.-|.+.--|.|.||.+||.+|+..   +..||+||+.+..+
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~   83 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK   83 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence            3558888888874          2123344589999999999999964   45799999987643

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.26  E-value=6.5e-07  Score=87.48  Aligned_cols=56  Identities=29%  Similarity=0.480  Sum_probs=40.4

Q ss_pred             cccccccccc--ccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchH
Q 018812           32 DDACSICLEE--FSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQ   87 (350)
Q Consensus        32 d~~C~ICle~--f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~   87 (350)
                      +..||||...  +...-...+.+|||.||..||..++.. ...||.|+..+....+..+
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q   61 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ   61 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence            5689999995  322111233379999999999996644 5689999999887665443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=2e-06  Score=82.20  Aligned_cols=55  Identities=31%  Similarity=0.784  Sum_probs=43.2

Q ss_pred             CCCCccccccccccccCCC-------CeeeecCCccccHHHHHHHHh--cCCCCCCCCcCCCCC
Q 018812           28 QDSCDDACSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK   82 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~-------~~~vl~CgH~FC~~CI~~Wl~--~s~sCPvCR~~l~~k   82 (350)
                      +..+|..|.||-..+....       ....+.|+|+||..||+.|+.  ++.+||.|++.+..+
T Consensus       220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            3455789999998874332       346789999999999999985  467899999887654

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=6e-06  Score=68.52  Aligned_cols=51  Identities=25%  Similarity=0.676  Sum_probs=38.8

Q ss_pred             Ccccccccccccc------------CCCC--eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           31 CDDACSICLEEFS------------ESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        31 ~d~~C~ICle~f~------------~~~~--~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .-+.|+||..-+-            ..+.  +..-.|.|.||..||.+|++....||+|.+.+..
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~  109 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF  109 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence            3468999987552            1111  2335899999999999999999999999887654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.83  E-value=2.8e-06  Score=65.98  Aligned_cols=50  Identities=38%  Similarity=0.842  Sum_probs=24.2

Q ss_pred             cccccccccccc-CCCCeee----ecCCccccHHHHHHHHhc---C--------CCCCCCCcCCCC
Q 018812           32 DDACSICLEEFS-ESDPSTV----TSCKHEFHLQCVLEWCQR---S--------SQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~-~~~~~~v----l~CgH~FC~~CI~~Wl~~---s--------~sCPvCR~~l~~   81 (350)
                      +..|.||+..+. .+..+.+    ..|++.||..||.+|+..   .        ..||.|+.+|..
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            578999999875 2222222    279999999999999963   1        259999988754

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=6.8e-06  Score=87.69  Aligned_cols=51  Identities=27%  Similarity=0.652  Sum_probs=43.1

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCCCCcc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDAT   85 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~kd~~   85 (350)
                      -++|+.|-.-+++   .+++.|+|.||..||...+. +...||.|...|...|+.
T Consensus       643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~  694 (698)
T KOG0978|consen  643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH  694 (698)
T ss_pred             ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence            3689999988855   67789999999999998885 567899999999877654

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=9.9e-06  Score=82.82  Aligned_cols=50  Identities=34%  Similarity=0.847  Sum_probs=38.8

Q ss_pred             ccccccccccccCC----CC----------eeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCC
Q 018812           32 DDACSICLEEFSES----DP----------STVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~~~----~~----------~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~   81 (350)
                      ...|+||+..+...    +.          -.++||.|.||..|+..|... +-.||+||.++..
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            45799999887411    11          235699999999999999985 5589999998863

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.6e-05  Score=79.07  Aligned_cols=59  Identities=34%  Similarity=0.810  Sum_probs=44.8

Q ss_pred             hccCCCCCccccccccccccCCC-----CeeeecCCccccHHHHHHHHh--c-----CCCCCCCCcCCCCC
Q 018812           24 EGGIQDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQ--R-----SSQCPMCWQPISLK   82 (350)
Q Consensus        24 ~g~~qd~~d~~C~ICle~f~~~~-----~~~vl~CgH~FC~~CI~~Wl~--~-----s~sCPvCR~~l~~k   82 (350)
                      .+..+...+.+|.||++.+....     -.++.+|.|.||..||..|-+  +     .+.||.||......
T Consensus       153 ~~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  153 SFALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             ccCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            35556677899999999985533     123467999999999999983  3     46899999876543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=9.2e-06  Score=60.26  Aligned_cols=47  Identities=32%  Similarity=0.716  Sum_probs=37.9

Q ss_pred             CccccccccccccCCCCeeeecCCc-cccHHHHHHHHh-cCCCCCCCCcCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ-RSSQCPMCWQPIS   80 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~-~s~sCPvCR~~l~   80 (350)
                      .+++|.||++...+   .++..||| -.|+.|-.+.++ .+..||+||.++.
T Consensus         6 ~~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    6 WSDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            45899999998744   56678999 578999877665 6789999999875

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.71  E-value=3.4e-05  Score=55.96  Aligned_cols=42  Identities=29%  Similarity=0.769  Sum_probs=32.3

Q ss_pred             ccccccccccCCCCeeeecCC-----ccccHHHHHHHHhcC--CCCCCCC
Q 018812           34 ACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCW   76 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~s--~sCPvCR   76 (350)
                      .|-||++... .+.+.+.||.     |.||..|+.+|+..+  ..||+|+
T Consensus         1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899998333 3445677885     899999999999654  4899994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.66  E-value=1.5e-05  Score=86.42  Aligned_cols=49  Identities=31%  Similarity=0.917  Sum_probs=38.2

Q ss_pred             cccccccccccc--CCCCe--eeecCCccccHHHHHHHHhcC--CCCCCCCcCCC
Q 018812           32 DDACSICLEEFS--ESDPS--TVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPIS   80 (350)
Q Consensus        32 d~~C~ICle~f~--~~~~~--~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~   80 (350)
                      -.+|+||+..+.  +..-|  +...|+|.||..|+..|+..+  ..||+||..+.
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            468999999874  11112  456799999999999999864  68999998765

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=3.6e-05  Score=74.73  Aligned_cols=48  Identities=23%  Similarity=0.528  Sum_probs=39.9

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLK   82 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~k   82 (350)
                      +.+|+||+...   ..++.+.|+|.||+.||.--.... ..|++||.+|...
T Consensus         7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            56899999886   446788999999999998777654 4699999998754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=4.2e-05  Score=76.38  Aligned_cols=49  Identities=24%  Similarity=0.760  Sum_probs=35.1

Q ss_pred             cccccccccccCCCCe-eeecCCccccHHHHHHHHhcC---CCCCCCCcCCCC
Q 018812           33 DACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISL   81 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~s---~sCPvCR~~l~~   81 (350)
                      ..|.||.+.+.....+ .+-.|||.||..|+.+|+..-   ..||+|+..+..
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            4799996665332222 233599999999999999863   579999955443

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.51  E-value=2.6e-05  Score=76.42  Aligned_cols=48  Identities=29%  Similarity=0.658  Sum_probs=42.2

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      -.+|.+|-.+|  .|..+++.|-|.||..||..++...+.||+|...+-.
T Consensus        15 ~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   15 HITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             ceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence            46999999999  4566788999999999999999999999999876654

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.50  E-value=2.1e-05  Score=83.99  Aligned_cols=52  Identities=19%  Similarity=0.477  Sum_probs=43.0

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .....|+||+..+.++......+|+|.||..||..|...-.+||+||..|..
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            4456799999888665444556899999999999999999999999998764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=6.8e-05  Score=75.98  Aligned_cols=58  Identities=26%  Similarity=0.647  Sum_probs=47.4

Q ss_pred             HhhhccCCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           21 AFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        21 a~v~g~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +...++.+...+..|.||+..|   .+++.++|||.||..||.+-+.....||.||..+..
T Consensus        73 ~~~s~~~~~~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   73 ALLSGPEEIRSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             hhhccCccccchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            3344455556789999999998   347777999999999999988888899999998875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.38  E-value=5.8e-05  Score=76.58  Aligned_cols=47  Identities=34%  Similarity=0.846  Sum_probs=37.0

Q ss_pred             ccccccccccccCCCC-eeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        32 d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      -.+|+|||+-+..... +..+.|.|.||..|+..|..  .+||+||.-..
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~  222 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS  222 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence            4589999999844321 24468999999999999974  68999987655

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00012  Score=72.45  Aligned_cols=46  Identities=33%  Similarity=0.787  Sum_probs=39.5

Q ss_pred             ccccccccccccCCCCeeeecCCc-cccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      -.+|-||+....+   ..++||.| -.|..|-+..--..+.||+||+++.
T Consensus       290 gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence            4689999999855   78899999 6789999887767889999999875

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.28  E-value=0.00031  Score=70.65  Aligned_cols=49  Identities=24%  Similarity=0.650  Sum_probs=40.4

Q ss_pred             ccccccccccCCCCeeeecCCccccHHHHHHHHhc--CCCCCCCCcCCCCCCcc
Q 018812           34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDAT   85 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~l~~kd~~   85 (350)
                      -|-||-+.=+   .+++-+|||..|..|+..|-..  ...||.||..|.-....
T Consensus       371 LCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  371 LCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            5899998853   4788899999999999999754  57899999999865443

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.27  E-value=0.00016  Score=81.30  Aligned_cols=72  Identities=38%  Similarity=0.698  Sum_probs=50.7

Q ss_pred             CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC----------CCCCCCCcCCCC---CCcc--hHHHHHH
Q 018812           28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----------SQCPMCWQPISL---KDAT--SQELLEA   92 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----------~sCPvCR~~l~~---kd~~--~~~ll~~   92 (350)
                      ||. |+.|.||+..-....|.+.+.|+|.||++|.+..+++.          -.||+|+.+|..   +|+.  ..++++.
T Consensus      3483 QD~-DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLldPiKel~ed 3561 (3738)
T KOG1428|consen 3483 QDA-DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYED 3561 (3738)
T ss_pred             ccc-CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHHHHHHHHHH
Confidence            443 78999999876555677889999999999999887653          269999998864   3322  2344555


Q ss_pred             HHHHhhhc
Q 018812           93 VEQERSIR  100 (350)
Q Consensus        93 ve~er~~r  100 (350)
                      +.....+|
T Consensus      3562 V~~KA~MR 3569 (3738)
T KOG1428|consen 3562 VRRKALMR 3569 (3738)
T ss_pred             HHHHHhhh
Confidence            44444433

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.24  E-value=0.00028  Score=68.68  Aligned_cols=51  Identities=33%  Similarity=0.816  Sum_probs=42.0

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-----------------------CCCCCCCCcCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----------------------SSQCPMCWQPISLK   82 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-----------------------s~sCPvCR~~l~~k   82 (350)
                      ...|.|||.-|.+++..+++.|-|.||..|+.+++..                       .-.||+||..|...
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e  188 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE  188 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence            3589999999988777899999999999999988631                       12599999988754

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.00018  Score=69.82  Aligned_cols=59  Identities=31%  Similarity=0.501  Sum_probs=46.8

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHH
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVE   94 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve   94 (350)
                      +.|-||..+|..   ++++.|+|.||..|...-++....|++|.+.+..-.....+++..+.
T Consensus       242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~  300 (313)
T KOG1813|consen  242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLK  300 (313)
T ss_pred             cccccccccccc---chhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHH
Confidence            469999999944   67889999999999999999999999998877655444455544443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.00029  Score=70.96  Aligned_cols=55  Identities=27%  Similarity=0.786  Sum_probs=40.9

Q ss_pred             CccccccccccccCC-C-CeeeecCCccccHHHHHHHHhc--CCCCCCCCcCCCCCCcc
Q 018812           31 CDDACSICLEEFSES-D-PSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDAT   85 (350)
Q Consensus        31 ~d~~C~ICle~f~~~-~-~~~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~l~~kd~~   85 (350)
                      +..+|+||++.+... + ....+.|+|.|..+||+.|+-+  ...||.|...-...++.
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~   61 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIR   61 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHH
Confidence            456899999988532 2 3455899999999999999953  35799997665544443

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.13  E-value=0.00019  Score=72.67  Aligned_cols=54  Identities=30%  Similarity=0.710  Sum_probs=44.1

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT   85 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~   85 (350)
                      .++..|+||...+.  +++..+.|+|.||..|+..|+..+..||.|+..+......
T Consensus        19 ~~~l~C~~C~~vl~--~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLR--DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCcccccccc--CCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            34789999999994  4444369999999999999999999999998887654433

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.11  E-value=0.00022  Score=53.42  Aligned_cols=41  Identities=37%  Similarity=0.829  Sum_probs=29.2

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc--CCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM   74 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--s~sCPv   74 (350)
                      ...|||.+..|  .+|++-..|+|.|-...|.+|++.  ...||+
T Consensus        11 ~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            57999999999  566677799999999999999944  457998

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00077  Score=63.36  Aligned_cols=56  Identities=27%  Similarity=0.546  Sum_probs=44.0

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhc--------CCCCCCCCcCCCCCCcch
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPISLKDATS   86 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--------s~sCPvCR~~l~~kd~~~   86 (350)
                      +.+..|..|-..+..++.++ +.|.|.||++|+.+|...        ..+||.|..+|.+.....
T Consensus        48 DY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlv  111 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLV  111 (299)
T ss_pred             CCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcccc
Confidence            34568999999997766654 589999999999999754        357999999887654433

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.94  E-value=0.00035  Score=64.53  Aligned_cols=46  Identities=26%  Similarity=0.656  Sum_probs=39.9

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      ...|.||-..|..   ++++.|||.||..|...-.+....|-+|-+...
T Consensus       196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence            5689999999944   788899999999999998888899999977544

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.00086  Score=64.59  Aligned_cols=50  Identities=24%  Similarity=0.589  Sum_probs=39.3

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc--CCCCCCCCcCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS   80 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~l~   80 (350)
                      ...+.+|++|-+..  .-|.++.+|+|.||..||..-+..  +..||.|-....
T Consensus       236 ~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34577999999887  345566789999999999876654  479999977654

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.00099  Score=66.22  Aligned_cols=53  Identities=21%  Similarity=0.490  Sum_probs=44.1

Q ss_pred             cCCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        26 ~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      ..-+.+|+.|+||+--...   .+..||+|.-|..||.+.+-..+.|=.|+..+..
T Consensus       416 ~lp~sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  416 DLPDSEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             CCCCcccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            3446778999999976533   4667999999999999999999999999887764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.48  E-value=0.001  Score=69.08  Aligned_cols=52  Identities=23%  Similarity=0.687  Sum_probs=41.6

Q ss_pred             CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc-----CCCCCCCCcCCCCC
Q 018812           28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQPISLK   82 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-----s~sCPvCR~~l~~k   82 (350)
                      .+..+..|.+|-+.-.+   .....|.|.||..||.++...     +.+||+|-..+.-.
T Consensus       532 enk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            34446799999998743   677899999999999999853     46899998877654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.0038  Score=59.51  Aligned_cols=54  Identities=15%  Similarity=0.351  Sum_probs=46.0

Q ss_pred             ccccccccccccCCCCe-eeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812           32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT   85 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~   85 (350)
                      ...|+||.+.+.+..+. ++-+|||+||..|...+......||+|-.++..+++.
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII  275 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence            45799999999776554 4459999999999999999999999999999887653

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.0049  Score=56.22  Aligned_cols=62  Identities=35%  Similarity=0.719  Sum_probs=42.1

Q ss_pred             hHHHhhhccCCCCCccccccccccccCCCCee----eecCCccccHHHHHHHHhcC-----------CCCCCCCcCCCCC
Q 018812           18 SAAAFVEGGIQDSCDDACSICLEEFSESDPST----VTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISLK   82 (350)
Q Consensus        18 ~~~a~v~g~~qd~~d~~C~ICle~f~~~~~~~----vl~CgH~FC~~CI~~Wl~~s-----------~sCPvCR~~l~~k   82 (350)
                      -++++.++   +++-..|.||+-+-.++..+-    -..|+..||.-|+..|++.-           ..||+|..++..+
T Consensus       154 ~a~a~Lek---dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  154 CAAAFLEK---DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             cHHHhcCc---chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            34555433   233457899987754443322    24899999999999999641           3699999888654

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.0084  Score=60.73  Aligned_cols=47  Identities=23%  Similarity=0.414  Sum_probs=37.3

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhc--------CCCCCCCCcCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPI   79 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--------s~sCPvCR~~l   79 (350)
                      ..|.||++...-....+.++|+|+||..|+..++..        .-.||-|...-
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~  239 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS  239 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence            479999999865567788999999999999999853        23588776543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.96  E-value=0.0023  Score=64.32  Aligned_cols=48  Identities=27%  Similarity=0.646  Sum_probs=38.5

Q ss_pred             CccccccccccccCCC-CeeeecCCccccHHHHHHHHhcC--CCCCCCCcC
Q 018812           31 CDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQP   78 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~   78 (350)
                      .++.|..|-+.+.-++ ....+||.|.||..|+.+++.++  .+||.||+-
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl  414 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL  414 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            4678999999985443 34568999999999999999765  579999853

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.002  Score=62.60  Aligned_cols=42  Identities=26%  Similarity=0.659  Sum_probs=33.4

Q ss_pred             ccccccccccccCCCCeeeecCCc-cccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      +.-|.||++...+   ...|+||| +-|.+|-...    ..||+||+.+.
T Consensus       300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcc---eEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence            6689999999844   67789999 6788886443    48999998764

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.78  E-value=0.0031  Score=59.67  Aligned_cols=45  Identities=31%  Similarity=0.723  Sum_probs=34.4

Q ss_pred             ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .|..|...-. +++..++.|.|+||..|...-.  ...||+|++++..
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRI   49 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeee
Confidence            5887776554 6788999999999999964422  2389999998753

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.56  E-value=0.013  Score=56.21  Aligned_cols=54  Identities=22%  Similarity=0.465  Sum_probs=41.5

Q ss_pred             CCccccccccccccCCCC-eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      .....|||+...|..... +.+-+|||+|+..+|.+.- ....||+|-.+|...|.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di  165 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI  165 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence            345689999999944333 3456999999999999984 45679999998886553

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.54  E-value=0.011  Score=58.77  Aligned_cols=52  Identities=21%  Similarity=0.466  Sum_probs=41.2

Q ss_pred             cCCCCCccccccccccccCCCCeeeecCCccccHHHHHHH--HhcCCCCCCCCcCCC
Q 018812           26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW--CQRSSQCPMCWQPIS   80 (350)
Q Consensus        26 ~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~W--l~~s~sCPvCR~~l~   80 (350)
                      ..+|+++..|.||.+.+.-   ..++||+|..|..|..+.  |...+.||+||..+.
T Consensus        55 ddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          55 DDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             cccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            3356667789999998733   678999999999998654  456789999998653

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.47  E-value=0.012  Score=42.79  Aligned_cols=45  Identities=27%  Similarity=0.674  Sum_probs=22.7

Q ss_pred             cccccccccCCCCe-eeecCCccccHHHHHHHHh-cCCCCCCCCcCC
Q 018812           35 CSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPI   79 (350)
Q Consensus        35 C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l   79 (350)
                      |++|.+.+...+.- .-=+|++.+|..|....+. ....||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78999998433322 2236889999999888876 478999999864

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.33  E-value=0.011  Score=58.73  Aligned_cols=57  Identities=19%  Similarity=0.489  Sum_probs=39.7

Q ss_pred             CCCCccccccccccccCCCCe-eeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCc
Q 018812           28 QDSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA   84 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~   84 (350)
                      .+++|+.|+.|++.+...|.- .--+||...|.-|....-+. +..||.||..+...+.
T Consensus        10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv   68 (480)
T COG5175          10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV   68 (480)
T ss_pred             cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence            345677899999998654433 23478988888886554443 5789999987765543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.31  E-value=0.009  Score=59.55  Aligned_cols=47  Identities=34%  Similarity=0.675  Sum_probs=34.3

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      ....+.|.||++...+   ...++|||.-|  |.... +....||+||+.|..
T Consensus       302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL  348 (355)
T ss_pred             cCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence            3446789999999844   67779999877  76443 234569999987753

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.018  Score=55.51  Aligned_cols=48  Identities=29%  Similarity=0.665  Sum_probs=39.2

Q ss_pred             cccccccccccCCC---CeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCC
Q 018812           33 DACSICLEEFSESD---PSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPIS   80 (350)
Q Consensus        33 ~~C~ICle~f~~~~---~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~   80 (350)
                      ..|-||-++|...+   .++++.|||.||..|+...+... -.||.||....
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~   55 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTE   55 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCccc
Confidence            57999999997553   36788999999999998887654 46999999853

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.21  E-value=0.022  Score=55.75  Aligned_cols=43  Identities=23%  Similarity=0.569  Sum_probs=34.9

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCc
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQ   77 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~   77 (350)
                      +.|+.|-.++  .++.....|+|.||..||...|. ..+.||.|..
T Consensus       275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            7899999998  45566668999999999986664 5678999943

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.023  Score=56.13  Aligned_cols=51  Identities=20%  Similarity=0.540  Sum_probs=40.8

Q ss_pred             CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      .......|+||+...  .++.++..-|-+||+.||..++...+.||+-..++.
T Consensus       296 l~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS  346 (357)
T ss_pred             CCCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence            334467899999887  455566667999999999999999999998766554

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.88  E-value=0.01  Score=48.17  Aligned_cols=33  Identities=24%  Similarity=0.579  Sum_probs=27.1

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHH
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVL   63 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~   63 (350)
                      ..+..|+||-..|.. ....+.||+|.||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            446789999999955 456778999999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=94.80  E-value=0.018  Score=55.94  Aligned_cols=55  Identities=27%  Similarity=0.472  Sum_probs=43.1

Q ss_pred             CCCCCccccccccccccCCC-CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           27 IQDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        27 ~qd~~d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      .+...+..||||.+.+.... .+..++|+|..|..|+.+.......||+|.+ +...
T Consensus       153 ~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~  208 (276)
T KOG1940|consen  153 VERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM  208 (276)
T ss_pred             hhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence            34444567999999875543 4577899999999999999887899999988 5443

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.64  E-value=0.025  Score=61.70  Aligned_cols=46  Identities=37%  Similarity=0.925  Sum_probs=35.8

Q ss_pred             ccccccccccccCCCCe-eeecCCccccHHHHHHHHhcC-------CCCCCCCc
Q 018812           32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQ   77 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~s-------~sCPvCR~   77 (350)
                      ..+|.||++.+...+++ ....|.|+||+.||..|....       -.||.|..
T Consensus       191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            56899999999665443 335789999999999998642       25999974

>PHA03096 p28-like protein; Provisional

Probab=94.40  E-value=0.024  Score=55.34  Aligned_cols=45  Identities=29%  Similarity=0.600  Sum_probs=32.2

Q ss_pred             cccccccccccCCC-----CeeeecCCccccHHHHHHHHhcC---CCCCCCCc
Q 018812           33 DACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ   77 (350)
Q Consensus        33 ~~C~ICle~f~~~~-----~~~vl~CgH~FC~~CI~~Wl~~s---~sCPvCR~   77 (350)
                      ..|.||++....+.     -..+..|.|.||..||..|-...   ..||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            58999999875321     23456899999999999997542   34555544

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=93.81  E-value=0.046  Score=47.80  Aligned_cols=45  Identities=18%  Similarity=0.449  Sum_probs=33.0

Q ss_pred             ccccccccccccCCCCeeeecCC------ccccHHHHHHHHhcCCCCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCK------HEFHLQCVLEWCQRSSQCPMCW   76 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~Cg------H~FC~~CI~~Wl~~s~sCPvCR   76 (350)
                      ..+|.||++.+...+.++.++|+      |.||..|+.+|-.....=|.=|
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR   76 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR   76 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence            57999999999663455556675      8999999999965444445443

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.80  E-value=0.027  Score=40.80  Aligned_cols=33  Identities=33%  Similarity=0.815  Sum_probs=23.6

Q ss_pred             eecCC-ccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           50 VTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        50 vl~Cg-H~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      +..|. |..|..|+...+..+..||+|+.+++.+
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            44686 9999999999999999999999988653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.65  E-value=0.035  Score=60.67  Aligned_cols=41  Identities=27%  Similarity=0.725  Sum_probs=33.8

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP   78 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~   78 (350)
                      ..|.+|--.+  .-|.+-..|+|.||.+|+.   .....||.|+..
T Consensus       841 skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence            5899999888  4566778999999999997   455789999763

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.33  E-value=0.068  Score=54.05  Aligned_cols=43  Identities=21%  Similarity=0.519  Sum_probs=37.5

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcC---CCCCCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMC   75 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s---~sCPvC   75 (350)
                      ..|||=.+--.+.+||..+.|||+.+.+-|.+..+..   ..||+|
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence            4799988887778899999999999999999988764   479999

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=93.13  E-value=0.036  Score=54.52  Aligned_cols=42  Identities=26%  Similarity=0.617  Sum_probs=28.6

Q ss_pred             ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCC
Q 018812           34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI   79 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l   79 (350)
                      .|--|--.+  .-.-++.+|+|+||++|.+.  ...+.||.|-..+
T Consensus        92 fCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence            455564443  22346679999999999643  3467899996554

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.98  E-value=0.026  Score=61.11  Aligned_cols=47  Identities=32%  Similarity=0.783  Sum_probs=38.1

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCCCCcCCCCCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD   83 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~kd   83 (350)
                      ..|.||++ .   +.+.++.|+|.||..|+...++..  ..||.||..+..+.
T Consensus       455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            79999999 3   557888999999999998887653  36999988776543

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=92.84  E-value=0.069  Score=38.31  Aligned_cols=40  Identities=30%  Similarity=0.917  Sum_probs=26.5

Q ss_pred             cccccccccCCCCeeeecCC-----ccccHHHHHHHHhc--CCCCCCC
Q 018812           35 CSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQR--SSQCPMC   75 (350)
Q Consensus        35 C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~--s~sCPvC   75 (350)
                      |-||++...+.. +.+.||.     ...|..|+.+|+..  ...|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999875433 4556774     37799999999974  4579887

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=92.78  E-value=0.033  Score=63.24  Aligned_cols=44  Identities=32%  Similarity=0.713  Sum_probs=37.5

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP   78 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~   78 (350)
                      ..|.||++.+..  .-.+..|+|.||..|+..|+..+..||+|+..
T Consensus      1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred             cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence            389999999953  24456899999999999999999999999743

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.51  E-value=0.073  Score=39.71  Aligned_cols=47  Identities=28%  Similarity=0.592  Sum_probs=33.6

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD   83 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd   83 (350)
                      +..|-.|...-   ....+++|+|..|..|..-  .+.+-||+|-.++...+
T Consensus         7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence            44566665553   3356789999999999643  44578999998887654

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.37  E-value=0.065  Score=37.83  Aligned_cols=41  Identities=24%  Similarity=0.717  Sum_probs=22.2

Q ss_pred             cccccccccCCCCeeeecCCccccHHHHHHHHhcCC--CCCCC
Q 018812           35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMC   75 (350)
Q Consensus        35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~--sCPvC   75 (350)
                      |.+|.+++..+..-....|.-.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            678888875432112235888999999999997654  69988

; PDB: 3NW0_A 2CT0_A.

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=91.91  E-value=0.093  Score=53.83  Aligned_cols=35  Identities=17%  Similarity=0.451  Sum_probs=29.0

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHh
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ   67 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~   67 (350)
                      ++++.|+||...|.+   +++++|+|..|..|.+..+.
T Consensus         2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccC---ceEeecccHHHHHHHHhhcc
Confidence            357899999999944   78889999999999876553

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=91.23  E-value=0.21  Score=44.85  Aligned_cols=34  Identities=24%  Similarity=0.527  Sum_probs=22.0

Q ss_pred             CccccccccccccCCCCeeeecC------------Cc-cccHHHHHHHHh
Q 018812           31 CDDACSICLEEFSESDPSTVTSC------------KH-EFHLQCVLEWCQ   67 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~C------------gH-~FC~~CI~~Wl~   67 (350)
                      +|.+|+||||..-+   .++|-|            +. .-|.-||.++.+
T Consensus         1 ed~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            36799999998733   344433            22 235679988853

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=91.19  E-value=0.2  Score=45.02  Aligned_cols=46  Identities=30%  Similarity=0.770  Sum_probs=34.0

Q ss_pred             CccccccccccccCCCCeeeecCCc-----cccHHHHHHHHhcC--CCCCCCCcCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPIS   80 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH-----~FC~~CI~~Wl~~s--~sCPvCR~~l~   80 (350)
                      .+..|=||.+...  +  -..||..     ..|..|+.+|+..+  ..|++|..++.
T Consensus         7 ~~~~CRIC~~~~~--~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          7 MDKCCWICKDEYD--V--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCeeEecCCCCC--C--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            4679999998852  2  1246654     56999999999764  57999988764

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.76  E-value=0.27  Score=48.41  Aligned_cols=42  Identities=29%  Similarity=0.664  Sum_probs=32.5

Q ss_pred             ccccccccccccCCCCeeeecC--CccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSC--KHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~C--gH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      =++||||.+.+..   ++. .|  ||.-|..|-.   +....||.|+.++.
T Consensus        48 lleCPvC~~~l~~---Pi~-QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   48 LLDCPVCFNPLSP---PIF-QCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             hccCchhhccCcc---cce-ecCCCcEehhhhhh---hhcccCCccccccc
Confidence            3689999999933   333 56  7999999964   44678999999987

>PHA02862 5L protein; Provisional

Probab=90.68  E-value=0.2  Score=44.41  Aligned_cols=46  Identities=26%  Similarity=0.665  Sum_probs=34.4

Q ss_pred             ccccccccccccCCCCeeeecCC-----ccccHHHHHHHHhcC--CCCCCCCcCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~s--~sCPvCR~~l~~   81 (350)
                      ++.|=||++.-.+  .  ..||.     ...|..|+.+|+..+  ..|++|+.++.-
T Consensus         2 ~diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          2 SDICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CCEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            4689999998522  2  34664     478999999999753  579999987653

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.75  E-value=0.16  Score=56.06  Aligned_cols=35  Identities=29%  Similarity=0.604  Sum_probs=29.5

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC   66 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl   66 (350)
                      -++.|.||...|.. .+-.+.+|||.||..||.+..
T Consensus       816 p~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence            36799999998855 566788999999999998775

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.00  E-value=0.41  Score=46.83  Aligned_cols=53  Identities=21%  Similarity=0.418  Sum_probs=36.9

Q ss_pred             cccccccccc-C-CCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcch
Q 018812           34 ACSICLEEFS-E-SDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATS   86 (350)
Q Consensus        34 ~C~ICle~f~-~-~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~   86 (350)
                      .|++|....- . .-...+-+|+|..|..|+...+.. ...||.|-..+....+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~   57 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV   57 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence            6999976531 1 111234599999999999998865 468999987766544443

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.99  E-value=0.14  Score=46.29  Aligned_cols=32  Identities=25%  Similarity=0.530  Sum_probs=26.9

Q ss_pred             CCCCccccccccccccCCCCeeeecCCccccH
Q 018812           28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHL   59 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~   59 (350)
                      ..+...+|.||||++..++.+..|||...||.
T Consensus       173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            34445689999999999898889999999985

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=87.40  E-value=0.15  Score=55.13  Aligned_cols=48  Identities=29%  Similarity=0.634  Sum_probs=38.1

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK   82 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~k   82 (350)
                      +.+|+||+..+..   +..+.|.|.||..|+..-+..   ...||+|+..+...
T Consensus        21 ~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~   71 (684)
T KOG4362|consen   21 ILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR   71 (684)
T ss_pred             hccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence            6899999999844   477899999999998766644   45799998766543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.84  E-value=0.049  Score=55.01  Aligned_cols=50  Identities=22%  Similarity=0.543  Sum_probs=41.1

Q ss_pred             cccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           33 DACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        33 ~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      ..|.||.+.|+.. +....+.|+|.+|..||..|+.....||.|+..+...
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN  247 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence            4699999998642 3345568999999999999999988999999887653

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=86.39  E-value=0.24  Score=47.40  Aligned_cols=50  Identities=24%  Similarity=0.519  Sum_probs=34.5

Q ss_pred             CccccccccccccCCCCee--ee-cCCccccHHHHHHHHhcC-CCCC--CCCcCCC
Q 018812           31 CDDACSICLEEFSESDPST--VT-SCKHEFHLQCVLEWCQRS-SQCP--MCWQPIS   80 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~--vl-~CgH~FC~~CI~~Wl~~s-~sCP--vCR~~l~   80 (350)
                      .|..||||..+---...+.  +- .|-|..|..|+.+.+... ..||  -|-+.+.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            4679999987531111122  22 499999999999998765 4799  7865444

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=85.63  E-value=0.49  Score=47.75  Aligned_cols=32  Identities=25%  Similarity=0.794  Sum_probs=23.8

Q ss_pred             CCccccHHHHHHHHhc-------------CCCCCCCCcCCCCCCc
Q 018812           53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKDA   84 (350)
Q Consensus        53 CgH~FC~~CI~~Wl~~-------------s~sCPvCR~~l~~kd~   84 (350)
                      |....|..|+-+|+..             +..||+||+.+...|.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV  355 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV  355 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence            4455688999999853             2369999999876553

They are purported to be transmembrane protein-precursors but their function is unknown.

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.28  E-value=0.61  Score=46.27  Aligned_cols=43  Identities=21%  Similarity=0.515  Sum_probs=36.5

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcC---CCCCCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMC   75 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s---~sCPvC   75 (350)
                      ..||+--+.-.+.+||+.+.|||+.-..-+....+..   ..||+|
T Consensus       337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC  382 (396)
T COG5109         337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC  382 (396)
T ss_pred             eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence            4799887777777899999999999999998887653   569999

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.81  E-value=0.43  Score=48.48  Aligned_cols=37  Identities=30%  Similarity=0.652  Sum_probs=26.8

Q ss_pred             cccccccc-ccccCCCCeeeecCCccccHHHHHHHHhc
Q 018812           32 DDACSICL-EEFSESDPSTVTSCKHEFHLQCVLEWCQR   68 (350)
Q Consensus        32 d~~C~ICl-e~f~~~~~~~vl~CgH~FC~~CI~~Wl~~   68 (350)
                      ..+|.||+ +.....+-..+..|+|.||..|+.++++.
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence            46899999 44322122235789999999999999874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.63  E-value=0.85  Score=49.85  Aligned_cols=41  Identities=27%  Similarity=0.687  Sum_probs=30.4

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM   74 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPv   74 (350)
                      ..|.||--.+. +.......|+|+.|..|..+|+.....||.
T Consensus      1029 ~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence            34666654442 223455789999999999999999889985

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.20  E-value=0.51  Score=50.62  Aligned_cols=39  Identities=28%  Similarity=0.562  Sum_probs=29.5

Q ss_pred             cccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCC
Q 018812           33 DACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCP   73 (350)
Q Consensus        33 ~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCP   73 (350)
                      +.|+||+..|... -.++-+-|||..|.+|+.....  .+||
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp   51 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP   51 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence            5799998776433 3456679999999999977653  5777

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=81.57  E-value=1  Score=49.47  Aligned_cols=50  Identities=14%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             CCccccccccccccCCC-Ceee---ecCCccccHHHHHHHHhc------CCCCCCCCcCC
Q 018812           30 SCDDACSICLEEFSESD-PSTV---TSCKHEFHLQCVLEWCQR------SSQCPMCWQPI   79 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~-~~~v---l~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l   79 (350)
                      ...++|.||.-.|.+.+ -.-.   -.|+|.||..||..|..+      .-.|++|..-|
T Consensus        94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            34567888887775411 1122   359999999999999864      23577776533

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=81.15  E-value=1.3  Score=38.95  Aligned_cols=54  Identities=20%  Similarity=0.333  Sum_probs=38.0

Q ss_pred             CCCCccccccccccccCCCCee-eecCCccccHHHHHHHHhc---CCCCCCCCcCCCC
Q 018812           28 QDSCDDACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISL   81 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~~-vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~   81 (350)
                      .|..=-+|.||.|...+..-.. ---||-..|..|....|+.   ...||+|+..+..
T Consensus        76 ~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   76 LDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             cCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            3433458999999874422111 1259999999999877764   5689999988764

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.08  E-value=1.7  Score=31.57  Aligned_cols=43  Identities=23%  Similarity=0.582  Sum_probs=21.3

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHh---cC--CCCCCCCcC
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RS--SQCPMCWQP   78 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s--~sCPvCR~~   78 (350)
                      +.|+|....+  .-|++...|.|.-|++- ..|+.   +.  -.||+|.++
T Consensus         3 L~CPls~~~i--~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRI--RIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB---SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEE--EeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence            5799999888  45677789999866542 33432   22  369999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=80.55  E-value=1.1  Score=49.38  Aligned_cols=53  Identities=30%  Similarity=0.699  Sum_probs=38.5

Q ss_pred             CCCccccccccccccCCCCeeeecCCc-----cccHHHHHHHHhcC--CCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH-----~FC~~CI~~Wl~~s--~sCPvCR~~l~~k   82 (350)
                      ++++..|-||.-.=..++|.- -||+.     ..|..|+.+|+.-+  +.|-+|..++..+
T Consensus         9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk   68 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK   68 (1175)
T ss_pred             CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence            345679999998755545443 36653     68999999999754  5699999877543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		6e-07
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		4e-05

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
          + C++CLE+F   D   +  CKH FH +C+++W +    CP+C  P+
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
          Q+ C   C IC  E+ + D +T   C H FH  CV  W Q+S  CP+C
Sbjct: 39 QEMC---CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	6e-19
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	9e-16
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-15
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-14
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	5e-14
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-13
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	3e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-13
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	7e-13
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	8e-13
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-12
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-12
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-11
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-11
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	8e-11
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-10
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-10
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-09
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-09
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-08
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-06
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	8e-06
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	1e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	2e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	4e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	5e-05
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	6e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	6e-05
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	9e-05
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	9e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	1e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	3e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	5e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	6e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	7e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	7e-04

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 79.0 bits (195), Expect = 6e-19
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80
           +  + C ICLE+ S  + S    C H F   C+  W +++  CP+C  P+ 
Sbjct: 2  ATVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 70.3 bits (172), Expect = 9e-16
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 26 GIQDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81
          G++ S   +C IC++ +SE          T C H F  QC+ +  + ++ CP C + I+ 
Sbjct: 4  GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63

Query: 82 KD 83
          K 
Sbjct: 64 KR 65

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 35 CSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
          C IC++ +SE          T C H F  QC+ +  + ++ CP C + I+ K 
Sbjct: 6  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 65.4 bits (160), Expect = 4e-14
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 30 SCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80
          S    C ICLE+   S   + V  C H  H  C  E  +   +CP+C  P S
Sbjct: 3  SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 65.6 bits (160), Expect = 5e-14
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATS 86
          + +  + C++CLE+F   D   +  CKH FH +C+++W +    CP+C  P+      S
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
          E G ++  ++ C+ICL    E +      C H FH  CV +W   + +CP+C   I  + 
Sbjct: 6  EEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65

Query: 84 ATS 86
           + 
Sbjct: 66 PSE 68

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 63.8 bits (155), Expect = 3e-13
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82
          +    DAC  C  E  + D       C H FH  C+  W +++++CP+C Q   ++
Sbjct: 22 RVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 26 GIQDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81
          G++ S   +C IC++ +SE          T C H F  QC+ +  + ++ CP C + I+ 
Sbjct: 9  GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68

Query: 82 K 82
          K
Sbjct: 69 K 69

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 62.0 bits (151), Expect = 7e-13
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATS 86
          ++ C IC++  ++     +  C H F  +C+ +W  R   CP+C   ++  + +S
Sbjct: 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 62.2 bits (151), Expect = 8e-13
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQE 88
          +     C IC + F   +P  VT C+H F   C LE  + + +C +C QP       ++E
Sbjct: 12 EEIPFRCFICRQAFQ--NP-VVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKE 68

Query: 89 LLEAVEQERS 98
          L+  +++   
Sbjct: 69 LMAKLQKSGP 78

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 22 FVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
            E       +  C IC  E+ + D +T   C H FH  CV  W Q+S  CP+C
Sbjct: 30 VTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80
             C +C+ +F       V  C HEFH +CV +W + +  CP+C     
Sbjct: 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAV 93
          C IC+E+    D      C       C+  W     +QCP C  P+ L++  +    E V
Sbjct: 25 CFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82

Query: 94 EQE 96
           Q+
Sbjct: 83 TQQ 85

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQ 87
                 C +C E+++  +      C H FH  C++ W ++   CP+C + ++ ++  + 
Sbjct: 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70

Query: 88 E 88
           
Sbjct: 71 P 71

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 56.4 bits (136), Expect = 8e-11
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 18 SAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77
           ++              C+ICL+      P +   CKH F   CV        +C +C Q
Sbjct: 1  GSSGSSGNTAPSLTVPECAICLQTCV--HPVS-LPCKHVFCYLCVKGASWLGKRCALCRQ 57

Query: 78 PIS 80
           I 
Sbjct: 58 EIP 60

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 57.9 bits (139), Expect = 8e-11
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 15/69 (21%)

Query: 29  DSCDDACSICLEEF---------------SESDPSTVTSCKHEFHLQCVLEWCQRSSQCP 73
           D   D C+IC                   SE        C H FH  C+  W +    CP
Sbjct: 45  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 104

Query: 74  MCWQPISLK 82
           +  +    +
Sbjct: 105 LDNREWEFQ 113

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80
          CSIC       D +T+T C H F   C++     S++CP C   + 
Sbjct: 18 CSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 15/69 (21%)

Query: 29  DSCDDACSICLEEF---------------SESDPSTVTSCKHEFHLQCVLEWCQRSSQCP 73
           D   D C+IC                   SE        C H FH  C+  W +    CP
Sbjct: 34  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93

Query: 74  MCWQPISLK 82
           +  +    +
Sbjct: 94  LDNREWEFQ 102

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
          C +C   F   D +T+  C H F   C++ + + S  CP+C   +    
Sbjct: 18 CVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATS----QELL 90
          C IC E F+      +  C H +   C+ ++    +QCP C   ++  D  +     EL+
Sbjct: 25 CGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELV 82

Query: 91 EAVEQERS 98
          +++   R+
Sbjct: 83 KSLNFARN 90

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 35 CSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQRSSQCPMC 75
          C++CL E  + + +     C H FH +CV  W    S CP+C
Sbjct: 8  CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 35 CSICLEEFSESDPS----TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
          C IC++ +SE   +      T C H F  QC+ +  + ++ CP C + I+ K 
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 7   EEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCV 62
                P                 S   +C IC++ +SE          T C H F  QC+
Sbjct: 47  NANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 106

Query: 63  LEWCQRSSQCPMCWQPISLKD 83
            +  + ++ CP C + I+ K 
Sbjct: 107 RDSLKNANTCPTCRKKINHKR 127

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 32  DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD-------- 83
           +  C IC E F   +  T  +C H F   C+ EW +R  +CP+C + I  K         
Sbjct: 64  ELQCIICSEYFI--EAVT-LNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNC 120

Query: 84  --ATSQELLEAVEQERSIRANPPRNATIF 110
                  L   V++ R +     +   +F
Sbjct: 121 INKMVNNLSSEVKERRIVLIRERKAKRLF 149

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
          CS C       +P  +  C+H F   CV +     + CP+C+ P  ++D
Sbjct: 25 CSRCTNILR--EPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQD 69

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 28  QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD 83
             S    C IC E   +     +  C H     C+  W +     CP C   I   +
Sbjct: 328 MGSTFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 28  QDSCDDACSICLEEFSESDPSTV-----TSCKHEFHLQCVLEWCQRSS-----------Q 71
           +D+ +  C+IC     +     +       C  + H  C+ EW +              Q
Sbjct: 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQ 363

Query: 72  CPMCWQPISLK 82
           CP C   +S  
Sbjct: 364 CPFCKAKLSTS 374

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 20/64 (31%)

Query: 32 DDACSICLEEFSESDPST---------------VTSCKHEFHLQCVLEWCQRSS-----Q 71
          ++ C IC+E+ + +   +               +T C H FHL C+L      +     Q
Sbjct: 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQ 84

Query: 72 CPMC 75
          CP C
Sbjct: 85 CPSC 88

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKD 83
          C  C        P   T C H F   C+      SS +C  C + I    
Sbjct: 18 CEKCHLVLC--SPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83
          C IC    +  DP   TSCKH F   C+L   +   S CP C  P    D
Sbjct: 26 CQICEHILA--DP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPI 79
          C+IC     +    +  +C    HL CV ++ Q +   +CP C    
Sbjct: 18 CNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 7   EEGKKPEDHMTSAAAFVEGGIQDSCDD-ACSICLEEFSESDPSTVTSCKHEFHLQCVLE- 64
            E         ++ +  +  +    +   C  C E      P T T C+H     C+   
Sbjct: 26  NEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVF--RPIT-TVCQHNVCKDCLDRS 82

Query: 65  WCQRSSQCPMCWQPISLKDA--TSQELLEAVEQ 95
           +  +   CP C   +    A   +Q L   + Q
Sbjct: 83  FRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 44.6 bits (105), Expect = 8e-06
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 35  CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLK-----DATSQE 88
           C ICL+     +  T   C H F   C++   +    +CP C + +  K     D     
Sbjct: 57  CPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDA 114

Query: 89  LLEAVEQERS 98
           L+  +   R 
Sbjct: 115 LISKIYPSRD 124

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--------RSSQCPMC-------WQPI 79
          C +CL E+     +T+  C+  F   C+ ++ +         +  CP          Q  
Sbjct: 8  CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67

Query: 80 SLKDATSQELLE 91
           ++   + E+++
Sbjct: 68 EIECMVAAEIMQ 79

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPISLKD 83
          C ICL      +    T C H F   C+++  + +   CP+  + +    
Sbjct: 21 CPICLMALR--EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ--CPMCWQPISLKDA 84
          C IC +  +  D   +  C + +  +C+      S +  CP C Q     DA
Sbjct: 18 CLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 35  CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPM--CWQPISLKDATSQELL 90
           C I  + +    P     C H F    +  + Q  +   CP   C Q +S++D     ++
Sbjct: 184 CPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241

Query: 91  EAVEQERSIRANPPRNAT 108
           E   +   ++ +  ++  
Sbjct: 242 ELRCKIAKMKESQEQDKR 259

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 35 CSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSS---QCPMCWQPISLKDATS 86
          C IC+E F+E      +  C H    QC+ +    S    +CP C +   +   T 
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQ 73

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEW-CQRSSQCPMCWQPISLKDATSQEL 89
             C +C+E     D +    +C ++    C        +  CP C +P     A  + L
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL 70

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 16 MTSAAAFVEGGIQDSCDD-ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCP 73
          M      +      S  +  C IC+E     +P T   C H     C     +++S  CP
Sbjct: 3  MALPKDAIP-----SLSECQCGICMEILV--EPVT-LPCNHTLCKPCFQSTVEKASLCCP 54

Query: 74 MCWQPIS 80
           C + +S
Sbjct: 55 FCRRRVS 61

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPISLKD 83
          C ICL      +    T C H F   C+++  + +   CP+  + +    
Sbjct: 21 CPICLMALR--EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWC---QRSSQCPMCWQPISLKD 83
          C ICL+      P T   C H F L+C+ +         +CP+C   +    
Sbjct: 23 CPICLDIL--QKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81
          C  C  E     P  +  C H     C LE      QCP+C  P  L
Sbjct: 9  CQQCQAEA--KCP-KLLPCLHTLCSGC-LE--ASGMQCPICQAPWPL 49

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 19 AAAFVEGGIQDSCDDA-CSICLEEFSESDPSTVTSCKHEFHLQCVLEWC---QRSSQCPM 74
           ++   G +++   +A CS+CLE     +P     C H F   C+  W    +R   CP+
Sbjct: 1  GSSGSSGALENLQVEASCSVCLEYL--KEPVI-IECGHNFCKACITRWWEDLERDFPCPV 57

Query: 75 C 75
          C
Sbjct: 58 C 58

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83
          C IC +  +  D   +  C + +  +C+      S    CP C Q     D
Sbjct: 16 CLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 64

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 16 MTSAAAFVEGGIQDSCDDA-CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----- 69
           + ++    G + +  ++  C ICLE    + P +   C H F   C+    ++S     
Sbjct: 2  SSGSSGMASGILVNVKEEVTCPICLELL--TQPLS-LDCGHSFCQACLTANHKKSMLDKG 58

Query: 70 -SQCPMCWQPISLKD 83
           S CP+C      ++
Sbjct: 59 ESSCPVCRISYQPEN 73

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQPISLKD 83
          C ICLE    ++P +   C H     C+    + +       S CP+C    S + 
Sbjct: 15 CPICLELL--TEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 35  CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAV 93
           CS C        P     C H +   C+          C  C      ++  S     + 
Sbjct: 34  CSACRNVLR--RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSA 90

Query: 94  EQERSIR 100
             + + R
Sbjct: 91  FPDNAAR 97

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 9/70 (12%)

Query: 35  CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKDATS-----QE 88
           C  C E      P T T C H     C+    +     CP C   +            Q 
Sbjct: 81  CVCCQELVY--QPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQT 137

Query: 89  LLEAVEQERS 98
           LL+      S
Sbjct: 138 LLDLFFPGYS 147

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWC---QRSSQCPMC 75
          C ICL+      P T   C H F L+C+ +         +CP+C
Sbjct: 23 CPICLDIL--QKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 16/82 (19%)

Query: 9  GKKPEDHMTSAAAFVEGGIQDSCDDA-CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67
          G      M S+       ++   ++  C ICLE     +P +   C H F   C+    +
Sbjct: 1  GSSGSSGMASSV------LEMIKEEVTCPICLELL--KEPVS-ADCNHSFCRACITLNYE 51

Query: 68 RS------SQCPMCWQPISLKD 83
           +        CP+C  P    +
Sbjct: 52 SNRNTDGKGNCPVCRVPYPFGN 73

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 29  DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ--CPMC 75
                 C+IC     +    +  +C    HL CV ++ Q +++  CP C
Sbjct: 177 PDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHC 223

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 32 DDACSICLEEFSESDPST---VTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQ 87
          D  C  C       +PS    V  C H     CV     R +  CP C  P+   +   Q
Sbjct: 3  DQGCPRCKTT-KYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 27 IQDSCDDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWC--QRSSQCPMCWQPI 79
          I  S  D C IC  E  +  P  +T C      H  H  C+ +W     +  C +C    
Sbjct: 10 ITPSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68

Query: 80 SLK 82
           ++
Sbjct: 69 IME 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.39
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.39
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.38
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.37
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.35
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.35
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.33
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.32
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.31
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.3
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.29
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.29
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.28
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.27
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.27
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.27
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.26
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.25
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.24
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.24
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.24
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.23
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.23
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.22
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.22
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.22
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.21
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.21
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.2
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.19
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.17
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.17
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.17
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.17
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.16
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.16
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.13
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.12
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.09
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.09
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.08
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.04
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.03
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.0
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.99
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.95
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.95
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.93
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.88
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.86
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.86
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.86
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.85
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.79
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.79
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.79
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.78
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.63
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.52
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.51
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.5
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.49
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.38
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.33
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.29
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.03
3nw0_A	238	Non-structural maintenance of chromosomes element	97.57
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	96.18
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.43
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	90.74
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	90.49
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	87.42
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	86.1
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	84.24
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	83.17

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.39  E-value=3.3e-13  Score=101.23  Aligned_cols=54  Identities=30%  Similarity=0.768  Sum_probs=47.5

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      ...+..|+||++.|.....+..++|+|.||..||..|+..+..||+||..+...
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            345678999999997667788899999999999999999999999999988754

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.39  E-value=2.4e-13  Score=108.21  Aligned_cols=52  Identities=35%  Similarity=0.763  Sum_probs=46.3

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      ..+..|+||++.|..++.+..++|+|.||..||..|+..+..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            4567899999999776777888999999999999999999999999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.5e-13  Score=101.82  Aligned_cols=54  Identities=31%  Similarity=0.864  Sum_probs=46.9

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      ...+..|+||++.|.......+++|+|.||..||..|+..+..||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            344789999999997766677789999999999999999999999999988753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.37  E-value=2.5e-13  Score=104.26  Aligned_cols=55  Identities=22%  Similarity=0.753  Sum_probs=47.8

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      ..+..|+||++.|.....+.+++|+|.||..||..|+..+..||+||+.+...+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            3467999999999766666778999999999999999999999999999887543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.35  E-value=3.2e-13  Score=96.81  Aligned_cols=50  Identities=30%  Similarity=0.802  Sum_probs=44.1

Q ss_pred             CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      ++..|+||++.|..++.+..++ |+|.||..||..|++.+..||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4679999999997766677776 9999999999999999999999998764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=3.8e-13  Score=102.72  Aligned_cols=52  Identities=31%  Similarity=0.776  Sum_probs=46.0

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .++..|+||++.|...+.+..++|+|.||..||..|+..+..||+||+.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            4567999999999776666788999999999999999999999999998864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.33  E-value=9.1e-13  Score=101.09  Aligned_cols=60  Identities=17%  Similarity=0.347  Sum_probs=49.0

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchHHHHHH
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEA   92 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~~ll~~   92 (350)
                      .++..|+||++.|.+   +++++|||.||..||..|+.. ...||+|+..+...++..+..+..
T Consensus         6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~   66 (78)
T 1t1h_A            6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS   66 (78)
T ss_dssp             SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHH
T ss_pred             cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHH
Confidence            457899999999944   677799999999999999987 778999999998766655444433

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=9.8e-13  Score=99.81  Aligned_cols=52  Identities=29%  Similarity=0.562  Sum_probs=44.8

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      ++..|+||++.|.  +++.+++|+|.||..||..|+..+..||+||+.+...++
T Consensus        14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   65 (72)
T 2djb_A           14 PYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP   65 (72)
T ss_dssp             GGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred             CCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence            4679999999994  455556999999999999999989999999999987654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.31  E-value=8.7e-13  Score=98.99  Aligned_cols=57  Identities=30%  Similarity=0.610  Sum_probs=47.7

Q ss_pred             CCCCccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           28 QDSCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      ..+++..|+||++.|.+.    ..+++++|+|.||..||..|+..+..||+||+.+...++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            445578999999998541    334788999999999999999999999999999887654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.30  E-value=6.5e-13  Score=107.47  Aligned_cols=60  Identities=27%  Similarity=0.660  Sum_probs=48.6

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      +..|+||++.|.  +++.+++|||.||..||..|+... ..||+||..+...++..+..+..+
T Consensus        22 ~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i   82 (100)
T 3lrq_A           22 VFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV   82 (100)
T ss_dssp             HTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHH
T ss_pred             CCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHH
Confidence            679999999994  343438999999999999999987 699999999987776655444443

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.29  E-value=1.8e-12  Score=92.76  Aligned_cols=50  Identities=34%  Similarity=0.705  Sum_probs=43.4

Q ss_pred             CccccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        31 ~d~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      .+..|+||++.|.+. ..+.+++|+|.||..||..|+.....||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            467999999998543 35778899999999999999999999999998874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.6e-12  Score=101.48  Aligned_cols=54  Identities=30%  Similarity=0.711  Sum_probs=42.9

Q ss_pred             CCCccccccccccccC-----------CCCe-eeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSE-----------SDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~-----------~~~~-~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      +.+++.|+||++.|.+           .+.+ .+++|+|.||..||.+|+..+.+||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            3456789999998843           2223 4456999999999999999999999999988654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.9e-12  Score=96.33  Aligned_cols=52  Identities=31%  Similarity=0.659  Sum_probs=43.9

Q ss_pred             CCccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      ..+..|+||++.|.+.    ..+.+++|+|.||..||..|+..+..||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4468999999998642    233778999999999999999999999999998764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=4.8e-12  Score=97.95  Aligned_cols=48  Identities=33%  Similarity=0.704  Sum_probs=42.7

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      ..+..|+||++.|.+   +++++|+|.||..||..|+.....||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            346789999999944   667899999999999999998999999999986

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.27  E-value=1.7e-12  Score=104.14  Aligned_cols=60  Identities=23%  Similarity=0.619  Sum_probs=48.9

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      +..|+||++.|.+  +..+++|||.||..||..|+..+..||+||..+...++..+..+..+
T Consensus        22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~   81 (99)
T 2y43_A           22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDEL   81 (99)
T ss_dssp             HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHH
T ss_pred             CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHH
Confidence            5799999999943  33444999999999999999988999999999987766666555543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.27  E-value=3.9e-12  Score=104.31  Aligned_cols=54  Identities=33%  Similarity=0.679  Sum_probs=42.4

Q ss_pred             CCCccccccccccccCCC---------------CeeeecCCccccHHHHHHHHh-----cCCCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~---------------~~~vl~CgH~FC~~CI~~Wl~-----~s~sCPvCR~~l~~k   82 (350)
                      ...++.|+||++.|....               ...+++|+|.||..||..|+.     .+..||+||..+..+
T Consensus        22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            334679999999995421               223789999999999999994     467899999988653

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.8e-12  Score=97.05  Aligned_cols=51  Identities=27%  Similarity=0.539  Sum_probs=44.0

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      ...+..|+||++.|.+   ++.++|+|.||..||..|+.....||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           12 SLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            3456899999999944   67779999999999999999989999999998743

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.25  E-value=2.9e-12  Score=93.91  Aligned_cols=54  Identities=30%  Similarity=0.623  Sum_probs=45.6

Q ss_pred             CccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      ++..|+||++.|.+.    +.+.+++|+|.||..||..|+..+..||+||..+...+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   59 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   59 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence            367999999998541    334778999999999999999999999999999887654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.24  E-value=3.4e-12  Score=95.23  Aligned_cols=49  Identities=33%  Similarity=0.855  Sum_probs=43.5

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .+..|+||++.+  .+++..++|+|.||..||..|+..+..||+||..+..
T Consensus         4 ~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            467999999998  4556888999999999999999999999999998764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.24  E-value=2.6e-12  Score=109.55  Aligned_cols=49  Identities=37%  Similarity=0.839  Sum_probs=43.6

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD   83 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd   83 (350)
                      +..|+||++.|.+   +++++|||.||..||..|+..+..||+||+.+....
T Consensus        53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            5789999999944   677899999999999999999999999999987654

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.24  E-value=7.4e-12  Score=98.88  Aligned_cols=60  Identities=22%  Similarity=0.464  Sum_probs=46.4

Q ss_pred             CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcC--CCCCCCCcCC-CCCCcchHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPI-SLKDATSQELLEAV   93 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s--~sCPvCR~~l-~~kd~~~~~ll~~v   93 (350)
                      ++..|+||++.|.+   +++++ |||.||..||..|+...  ..||+||..+ ...++..+..+..+
T Consensus        12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~   75 (92)
T 3ztg_A           12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQA   75 (92)
T ss_dssp             TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred             cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHH
Confidence            46899999999943   56678 99999999999999754  5899999997 44455555554443

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.23  E-value=6.7e-12  Score=104.77  Aligned_cols=60  Identities=20%  Similarity=0.362  Sum_probs=48.5

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCC-CCcchHHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL-KDATSQELLEAVE   94 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~-kd~~~~~ll~~ve   94 (350)
                      +..|+||++.|.+   ++.++|||.||..||..|+... ..||+||..+.. .++..+..+..+.
T Consensus        52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i  113 (124)
T 3fl2_A           52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVL  113 (124)
T ss_dssp             HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHH
T ss_pred             CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHH
Confidence            5789999999943   6777999999999999999854 489999999987 5555665555544

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.7e-12  Score=94.75  Aligned_cols=51  Identities=24%  Similarity=0.649  Sum_probs=43.0

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHh---cCCCCCCCCcCCCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQPISLKD   83 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s~sCPvCR~~l~~kd   83 (350)
                      .++..|+||++.|.+   +++++|+|.||..||..|+.   ....||+||+.+...+
T Consensus        18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            346899999999943   66779999999999999997   3568999999987654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.22  E-value=6.7e-12  Score=102.34  Aligned_cols=50  Identities=26%  Similarity=0.628  Sum_probs=42.9

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      ++..|+||++.|.  +++.+++|||.||..||..|+.....||+||..+...
T Consensus        14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3689999999994  3444449999999999999999989999999998865

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=8.8e-12  Score=97.07  Aligned_cols=53  Identities=26%  Similarity=0.595  Sum_probs=44.7

Q ss_pred             CccccccccccccCCCC-eeeecCCccccHHHHHHHHhcC---CCCCCCCcCCCCCC
Q 018812           31 CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKD   83 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl~~s---~sCPvCR~~l~~kd   83 (350)
                      ++..|+||++.|.+.+. +++++|+|.||..||..|+...   ..||+||+.+...+
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            46799999999965443 6788999999999999999876   78999999887643

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.22  E-value=6.1e-12  Score=103.77  Aligned_cols=52  Identities=23%  Similarity=0.611  Sum_probs=43.8

Q ss_pred             CCccccccccccccCC---------------CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~---------------~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .+++.|+||++.|...               ..+.+++|+|.||..||..|+..+.+||+||+.+..
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            3578999999998542               125668999999999999999999999999998754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=8.1e-12  Score=93.03  Aligned_cols=50  Identities=22%  Similarity=0.468  Sum_probs=42.1

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD   83 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~kd   83 (350)
                      ++..|+||++.+.+   ++.++|||.||..||..|+. ....||+||+.+...+
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           14 DKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             cCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            46899999999943   45579999999999999995 5678999999987654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.21  E-value=8.5e-12  Score=95.33  Aligned_cols=50  Identities=26%  Similarity=0.525  Sum_probs=41.7

Q ss_pred             CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcC--CCCCCCCcCCCCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD   83 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~kd   83 (350)
                      ++..|+||++.|.  + +++++ |+|.||..||..|+..+  ..||+||+.+...+
T Consensus        14 ~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           14 DELLCLICKDIMT--D-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             GGGSCSSSCCCCT--T-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             CCCCCcCCChHHh--C-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            4689999999994  3 55678 99999999999999865  68999999866544

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.20  E-value=1.4e-11  Score=97.24  Aligned_cols=60  Identities=8%  Similarity=-0.044  Sum_probs=51.4

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      ++..|+||++.|.+   +++++|||.||..||..|+.....||+|+..+...++.++..+...
T Consensus        13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~   72 (85)
T 2kr4_A           13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQ   72 (85)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred             hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHH
Confidence            47899999999955   6777999999999999999988999999999998877776655443

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.19  E-value=1e-11  Score=95.62  Aligned_cols=51  Identities=27%  Similarity=0.687  Sum_probs=43.2

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhc------CCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l~~kd~   84 (350)
                      .+..|+||++.|.+   +++++|+|.||..||..|+..      ...||+||..+...++
T Consensus        18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~   74 (85)
T 2ecw_A           18 EEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL   74 (85)
T ss_dssp             TTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred             cCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence            36799999999943   557899999999999999987      6789999999876543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.17  E-value=3.4e-11  Score=97.73  Aligned_cols=63  Identities=10%  Similarity=0.063  Sum_probs=53.5

Q ss_pred             CccccccccccccCCCCeeeecCC-ccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE   96 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~Cg-H~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve~e   96 (350)
                      ++..|+||++.|.+   +++++|| |.||..||..|+.....||+|+.++...++.++..+......
T Consensus        21 ~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~   84 (98)
T 1wgm_A           21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQR   84 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHH
T ss_pred             HhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHH
Confidence            47899999999955   6778999 999999999999988899999999998888877666554433

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.17  E-value=2.9e-11  Score=98.49  Aligned_cols=62  Identities=10%  Similarity=-0.033  Sum_probs=53.1

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ   95 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve~   95 (350)
                      ++..|+||++.|.+   +++++|||.||..||..|+.....||+|+.++...++.++..+.....
T Consensus        28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~   89 (100)
T 2kre_A           28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQ   89 (100)
T ss_dssp             TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHH
T ss_pred             HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHH
Confidence            47899999999955   677799999999999999998889999999999888887766655443

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.17  E-value=2.5e-11  Score=105.47  Aligned_cols=62  Identities=19%  Similarity=0.414  Sum_probs=50.0

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCCC-CcchHHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLK-DATSQELLEAVEQ   95 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~k-d~~~~~ll~~ve~   95 (350)
                      ++..|+||++.|.+   +++++|+|.||..||..|+.... .||+||..+... .+..+..+..+..
T Consensus        77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~  140 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLD  140 (150)
T ss_dssp             HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHH
T ss_pred             cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHH
Confidence            35789999999944   66789999999999999998754 899999999877 5566665555443

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.3e-11  Score=94.93  Aligned_cols=51  Identities=25%  Similarity=0.624  Sum_probs=43.4

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhc------CCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l~~kd~   84 (350)
                      ++..|+||++.|.+   +++++|+|.||..||..|+..      ...||+||..+...++
T Consensus        18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~   74 (85)
T 2ecv_A           18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI   74 (85)
T ss_dssp             CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred             CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence            36899999999943   566799999999999999987      7789999999886543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.16  E-value=4.6e-12  Score=96.90  Aligned_cols=51  Identities=27%  Similarity=0.590  Sum_probs=42.9

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhc-------CCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-------s~sCPvCR~~l~~kd~   84 (350)
                      ++..|+||++.|.+   +++++|||.||..||..|+..       ...||+||..+...++
T Consensus        11 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l   68 (79)
T 2egp_A           11 EEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL   68 (79)
T ss_dssp             CCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred             cCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence            46899999999943   556799999999999999976       5689999999886543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=5.3e-12  Score=94.85  Aligned_cols=50  Identities=24%  Similarity=0.820  Sum_probs=43.6

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD   83 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd   83 (350)
                      ..+..|+||++.+.+    ++++|+|.||..||..|+.....||+||..+...+
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            446899999999843    77899999999999999998999999999887544

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.13  E-value=1.9e-11  Score=106.77  Aligned_cols=60  Identities=23%  Similarity=0.619  Sum_probs=46.0

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCC-CcchHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK-DATSQELLEAV   93 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~k-d~~~~~ll~~v   93 (350)
                      +..|+||++.|.  +++.+++|||.||..||..|+.. ...||+||..+... .+..+..+..+
T Consensus        54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~  115 (165)
T 2ckl_B           54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDAL  115 (165)
T ss_dssp             HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHH
T ss_pred             CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHH
Confidence            568999999994  44444599999999999999987 77899999998643 34444444443

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4.3e-11  Score=88.14  Aligned_cols=43  Identities=28%  Similarity=0.783  Sum_probs=36.5

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHh---cCCCCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC   75 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s~sCPvC   75 (350)
                      .++..|+||++.|.+   +++++|||.||..||..|+.   ....||+|
T Consensus        18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            347899999999943   56679999999999999998   45689998

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.09  E-value=4.3e-11  Score=99.24  Aligned_cols=62  Identities=19%  Similarity=0.433  Sum_probs=49.8

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCCCCcchHHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKDATSQELLEAVEQ   95 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~kd~~~~~ll~~ve~   95 (350)
                      ++..|+||++.|.+   ++.++|||.||..||..|+.... .||+||..+...+......+.....
T Consensus        17 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~   79 (118)
T 3hct_A           17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL   79 (118)
T ss_dssp             GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred             CCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHc
Confidence            46799999999943   57789999999999999998765 9999999998876655555544443

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.09  E-value=1.8e-11  Score=99.53  Aligned_cols=50  Identities=34%  Similarity=0.693  Sum_probs=41.9

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC---CCCCCCcCCCCCCc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS---QCPMCWQPISLKDA   84 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~---sCPvCR~~l~~kd~   84 (350)
                      +..|+||++.|.+   ++.++|||.||..||..|+....   .||+||..+...++
T Consensus        21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            5689999999943   55679999999999999998653   89999999876543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.09  E-value=5.1e-11  Score=88.41  Aligned_cols=54  Identities=24%  Similarity=0.546  Sum_probs=42.5

Q ss_pred             Cccccccccc-cccCCC-CeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLE-EFSESD-PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle-~f~~~~-~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~   84 (350)
                      ++..|+||++ .|.+.. ...+++|||.||..||..|+.. ...||+||+.+...++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            3678999999 774422 1246799999999999999765 4679999999987654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.08  E-value=1.2e-11  Score=103.85  Aligned_cols=53  Identities=25%  Similarity=0.629  Sum_probs=1.9

Q ss_pred             CCCccccccccccccCCC---------------CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           29 DSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~---------------~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +..++.|+||++.|....               .+..++|+|.||..||..|+..+.+||+||+.+..
T Consensus        45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CCCC----------------------------------------------------------------
T ss_pred             cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            344689999999995311               23346999999999999999999999999998754

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.08  E-value=3.1e-11  Score=99.98  Aligned_cols=57  Identities=25%  Similarity=0.603  Sum_probs=46.5

Q ss_pred             ccccccccccccCCCCeeee-cCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl-~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      +..|+||++.|.  + ++++ +|||.||..||..|+.  ..||+||..+...++..+..+..+
T Consensus        22 ~~~C~IC~~~~~--~-pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l   79 (117)
T 1jm7_B           22 LLRCSRCTNILR--E-PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSM   79 (117)
T ss_dssp             TTSCSSSCSCCS--S-CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHH
T ss_pred             CCCCCCCChHhh--C-ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHH
Confidence            689999999994  4 4555 9999999999999997  789999999987776665544443

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.07  E-value=5.7e-11  Score=98.46  Aligned_cols=54  Identities=30%  Similarity=0.626  Sum_probs=45.7

Q ss_pred             CccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      ++..|+||++.|.+.    ..+++++|||.||..||..|+..+..||+||+.+...+.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence            478999999999541    233788999999999999999999999999999876543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.05  E-value=2.8e-11  Score=99.59  Aligned_cols=49  Identities=27%  Similarity=0.628  Sum_probs=41.5

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~   81 (350)
                      .++..|+||++.|.+   ++.++|||.||..||..|+.. ...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            346899999999943   566799999999999999976 5689999998863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.04  E-value=1.3e-10  Score=107.54  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=52.4

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQ   95 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~ve~   95 (350)
                      ...+..|+||++.|.+   |++++|||.||..||..|+... ..||+|+.++...++.++..+.....
T Consensus       205 ~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~  269 (281)
T 2c2l_A          205 IPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVID  269 (281)
T ss_dssp             CCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHH
T ss_pred             CCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHH
Confidence            3457899999999954   6778999999999999999864 45999999998888877766665443

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=9.5e-11  Score=84.36  Aligned_cols=42  Identities=36%  Similarity=1.024  Sum_probs=35.5

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHh---cCCCCCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC   75 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s~sCPvC   75 (350)
                      ++..|+||++.|.+   +++++|+|.||..||..|+.   ....||+|
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            46799999999944   56689999999999999954   46789998

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=2e-10  Score=92.01  Aligned_cols=63  Identities=21%  Similarity=0.440  Sum_probs=50.3

Q ss_pred             CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcC------CCCCC--CCcC-CCCCCcchHHHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS------SQCPM--CWQP-ISLKDATSQELLEAVEQE   96 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s------~sCPv--CR~~-l~~kd~~~~~ll~~ve~e   96 (350)
                      .+..|+||++.|.+   +++++ |||.||..||..|+...      ..||+  |+.. +...++.++..+......
T Consensus         6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~   78 (94)
T 2yu4_A            6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIEN   78 (94)
T ss_dssp             SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHH
T ss_pred             cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHH
Confidence            47899999999944   66664 99999999999999764      48999  9887 777787777666655443

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.7e-10  Score=90.45  Aligned_cols=53  Identities=30%  Similarity=0.697  Sum_probs=43.6

Q ss_pred             CCCccccccccccccCCCCeeeecCC-----ccccHHHHHHHHhcC--CCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~s--~sCPvCR~~l~~k   82 (350)
                      ..+++.|.||++.|..+++. +++|.     |.||..||.+|+..+  ..||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            44567999999998765554 68996     999999999999875  4899999988753

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.99  E-value=1.9e-10  Score=94.73  Aligned_cols=51  Identities=33%  Similarity=0.628  Sum_probs=43.9

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDAT   85 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~   85 (350)
                      +..|+||++.|.+   ++.++|||.||..||..|+.. ...||+||..+...++.
T Consensus        23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   74 (116)
T 1rmd_A           23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (116)
T ss_dssp             HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence            6789999999943   666899999999999999987 67899999998876543

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.95  E-value=4.5e-10  Score=87.55  Aligned_cols=53  Identities=19%  Similarity=0.434  Sum_probs=41.4

Q ss_pred             CCccccccccccccCCCCeeeec--CCccccHHHHHHHHhc-CCCCCCCCcCCCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVTS--CKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD   83 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~--CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd   83 (350)
                      .++..|+||++.|...+ +..++  |||.||..||..|+.. ...||+||+.+....
T Consensus         9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            34789999999985423 33444  9999999999998854 568999999988654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.95  E-value=2.8e-10  Score=94.24  Aligned_cols=57  Identities=30%  Similarity=0.608  Sum_probs=47.3

Q ss_pred             CCCCccccccccccccC----CCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           28 QDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~----~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      .+..+..|+||++.|..    ...+..++|+|.||..||..|+...+.||+||..+...++
T Consensus        68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~  128 (133)
T 4ap4_A           68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY  128 (133)
T ss_dssp             CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred             cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence            34557899999999854    1234778999999999999999999999999999987654

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.93  E-value=1.3e-09  Score=97.73  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHHHHH
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQE   96 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~ve~e   96 (350)
                      ..+..||||++.|.+   |++++|||.||..||..|+... .+||+|+.++...++.++..+......
T Consensus       104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~  168 (179)
T 2f42_A          104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDA  168 (179)
T ss_dssp             CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred             cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHH
Confidence            357899999999954   6777999999999999999874 469999999998888877666654443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.88  E-value=3.3e-10  Score=82.27  Aligned_cols=48  Identities=25%  Similarity=0.480  Sum_probs=39.8

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      +.++..|+||++.|.+   +++++|+|.||..||..|   ...||+||+.+...
T Consensus         3 e~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            3 EFQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             SCCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             cccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            3457899999999954   577899999999999774   56899999988754

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.86  E-value=4.7e-10  Score=96.53  Aligned_cols=48  Identities=17%  Similarity=0.409  Sum_probs=41.0

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL   81 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~   81 (350)
                      ++..|+||++.|.+   ++.++|||.||..||..|+.... .||+||..+..
T Consensus        30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            47899999999944   56789999999999999998664 89999997643

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.86  E-value=1.1e-09  Score=95.97  Aligned_cols=61  Identities=20%  Similarity=0.445  Sum_probs=48.8

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVE   94 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~ve   94 (350)
                      ++..|+||++.|.+   ++.++|||.||..||..|+... ..||+||..+...++.....+....
T Consensus        17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i   78 (170)
T 3hcs_A           17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI   78 (170)
T ss_dssp             GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred             CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHH
Confidence            47899999999943   5668999999999999999764 4999999999877665554444433

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.86  E-value=1.4e-09  Score=81.23  Aligned_cols=49  Identities=24%  Similarity=0.592  Sum_probs=41.6

Q ss_pred             CCccccccccccccCCCCeeee--cCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl--~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .++..|.||++.+.+   +.++  +|||. ||..|+..|+..+..||+||+.+..
T Consensus         6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            346799999999844   4555  99999 8999999999988999999998853

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.4e-09  Score=83.04  Aligned_cols=49  Identities=24%  Similarity=0.616  Sum_probs=41.2

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCCCCcCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLK   82 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~k   82 (350)
                      -..|.||++.|..+  .....|+|.||..||.+|++.+  .+||+|+..|...
T Consensus        15 i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           15 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            46899999999643  3445899999999999999887  7899999988754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.79  E-value=1.2e-09  Score=83.55  Aligned_cols=43  Identities=28%  Similarity=0.716  Sum_probs=37.9

Q ss_pred             ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +..|+||++.+.+   ++.++|||. ||..|+..|    ..||+||..+..
T Consensus        24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            5799999999844   677899999 999999988    889999998864

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.79  E-value=3.1e-09  Score=105.53  Aligned_cols=48  Identities=25%  Similarity=0.642  Sum_probs=42.3

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK   82 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~k   82 (350)
                      +..|+||++.+.+   ++.++|||.||..||..|+. ....||+||..+...
T Consensus       332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            4699999999844   77889999999999999998 678999999988754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.79  E-value=3e-09  Score=79.21  Aligned_cols=48  Identities=21%  Similarity=0.508  Sum_probs=40.7

Q ss_pred             CccccccccccccCCCCeeee--cCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           31 CDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl--~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      .+..|.||++.+.+   +.++  +|||. ||..|+..|......||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            46789999998843   4455  99998 9999999999888899999998853

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.78  E-value=1.8e-09  Score=102.02  Aligned_cols=61  Identities=23%  Similarity=0.505  Sum_probs=50.2

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCC--CCcCCCCCCcchHHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEAVE   94 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPv--CR~~l~~kd~~~~~ll~~ve   94 (350)
                      +..||||++.|  .+|++.+.|||.||..||..|+...  ..||+  |++.+...++.++..+..+.
T Consensus       181 el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lv  245 (267)
T 3htk_C          181 ELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRC  245 (267)
T ss_dssp             CSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHH
T ss_pred             eeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHH
Confidence            56899999999  5565556999999999999999764  47999  99999988888776665443

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=8.5e-09  Score=78.87  Aligned_cols=43  Identities=28%  Similarity=0.729  Sum_probs=36.3

Q ss_pred             ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +..|+||++.+.+   +++++|+|. ||..|+..    ...||+||..+..
T Consensus        25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence            5689999999844   677899999 99999954    4789999998865

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=5.3e-08  Score=73.65  Aligned_cols=46  Identities=26%  Similarity=0.576  Sum_probs=38.3

Q ss_pred             CCCccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +.++..|.||++.+.+   +++++|+|. ||..|+..    ...||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            3446789999999844   778899999 99999973    5789999998865

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.51  E-value=4.5e-08  Score=72.78  Aligned_cols=51  Identities=12%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             ccccccccccccCCCCeeee-cCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812           32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT   85 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl-~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~   85 (350)
                      ...|+||++.+.+   ++++ +|||.|+..||.+|+..+..||++++++...++.
T Consensus         3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li   54 (61)
T 2bay_A            3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV   54 (61)
T ss_dssp             -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred             eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence            4689999999944   5666 8999999999999999888899999999876653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.50  E-value=2.5e-08  Score=77.57  Aligned_cols=43  Identities=28%  Similarity=0.624  Sum_probs=37.0

Q ss_pred             ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +..|.||++.+.+   +..++|||. ||..|+..|    ..||+||..+..
T Consensus        18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            5689999999844   777899999 999999876    489999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.49  E-value=7.3e-08  Score=76.54  Aligned_cols=51  Identities=22%  Similarity=0.617  Sum_probs=38.4

Q ss_pred             CccccccccccccCCCCeeeecCCccccHHHHHHHHhc--------CCCCCC--CCcC--CCC
Q 018812           31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPM--CWQP--ISL   81 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--------s~sCPv--CR~~--l~~   81 (350)
                      .+.+|+||++.+...+...+++|+|.||..||..|+..        ...||.  |+..  +..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~   66 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE   66 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence            36789999999854222233479999999999999863        136999  9988  554

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.38  E-value=6.2e-08  Score=94.77  Aligned_cols=52  Identities=25%  Similarity=0.585  Sum_probs=39.8

Q ss_pred             CCccccccccccccCCC-Ce-e---eecCCccccHHHHHHHHhcC-----------CCCCCCCcCCCC
Q 018812           30 SCDDACSICLEEFSESD-PS-T---VTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISL   81 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~-~~-~---vl~CgH~FC~~CI~~Wl~~s-----------~sCPvCR~~l~~   81 (350)
                      +....|+||++.+.+.. -+ .   ...|+|.||..||.+|++..           ..||+||+++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            34668999999986522 22 1   24899999999999999752           469999998764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.33  E-value=9e-08  Score=93.72  Aligned_cols=43  Identities=21%  Similarity=0.623  Sum_probs=37.7

Q ss_pred             ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL   81 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~   81 (350)
                      +..|+||++.+.+   ++.++|||. ||..|+..|    ..||+||..+..
T Consensus       295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            5789999999944   677899999 999999887    789999998864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.29  E-value=6e-07  Score=66.51  Aligned_cols=50  Identities=24%  Similarity=0.570  Sum_probs=38.8

Q ss_pred             CCCccccccccccccCCCCeeeecCC--c---cccHHHHHHHHhc--CCCCCCCCcCCCC
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCK--H---EFHLQCVLEWCQR--SSQCPMCWQPISL   81 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~Cg--H---~FC~~CI~~Wl~~--s~sCPvCR~~l~~   81 (350)
                      ++++..|.||++..  +++ .++||.  |   .||..||.+|+..  +..||+|+..+..
T Consensus         3 ~~~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            3 DEDVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             TCSCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            45577999999975  333 357865  4   9999999999974  5789999988754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.03  E-value=2.6e-06  Score=69.39  Aligned_cols=46  Identities=24%  Similarity=0.569  Sum_probs=38.2

Q ss_pred             ccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCC
Q 018812           34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL   81 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~   81 (350)
                      .|++|--.+  ....++.||+|+||..|+..|.++ .+.||+|+.++..
T Consensus         3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            488888777  334678899999999999999854 6899999998864

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.57  E-value=4.5e-05  Score=70.91  Aligned_cols=50  Identities=24%  Similarity=0.579  Sum_probs=40.2

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCCCCcCCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD   83 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~kd   83 (350)
                      -..|.||.+.+..+  .....|+|.||..|+..|++..  ..||.|+..|....
T Consensus       180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~  231 (238)
T 3nw0_A          180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI  231 (238)
T ss_dssp             CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred             CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            46899999998543  3444599999999999999765  48999999887654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.43  E-value=0.0071  Score=47.84  Aligned_cols=34  Identities=12%  Similarity=0.347  Sum_probs=25.9

Q ss_pred             CccccccccccccCCCCeee--ecCCccccHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWC   66 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~v--l~CgH~FC~~CI~~Wl   66 (350)
                      ++..|+||.+.+.  .+++.  +.|+|.||..|+..|.
T Consensus         2 ee~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHHh
Confidence            4689999997642  22333  8999999999999843

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=90.74  E-value=0.29  Score=53.53  Aligned_cols=60  Identities=13%  Similarity=0.151  Sum_probs=49.8

Q ss_pred             CCccccccccccccCCCCeeeecCC-ccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHH
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA   92 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~Cg-H~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~   92 (350)
                      -++..|||-++.+.+   |++++.| +.|=..+|.+|+..+.+||+=|+++...++.++..+..
T Consensus       889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~  949 (968)
T 3m62_A          889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQ  949 (968)
T ss_dssp             CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHH
T ss_pred             cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHH
Confidence            346789999999955   6777887 68999999999998999999999999887777655443

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=90.49  E-value=0.19  Score=37.46  Aligned_cols=53  Identities=23%  Similarity=0.485  Sum_probs=35.9

Q ss_pred             hccCCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCCCcCC
Q 018812           24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI   79 (350)
Q Consensus        24 ~g~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvCR~~l   79 (350)
                      ++......+..|.||.+.   ++-+.--.|...||..|+...+...    -.||.|....
T Consensus         4 E~~~~~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C            4 EGQQNLAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTTTCCCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             ccccCCCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            343344456789999864   3333334788999999998777543    3699996543

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=87.42  E-value=0.43  Score=47.00  Aligned_cols=60  Identities=25%  Similarity=0.444  Sum_probs=43.1

Q ss_pred             cccccccccccCCCCeeeecCCccccHH--HHHHHHhcC--CCCCCCCcCCCCCCcchHHHHHHHH
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQ--CVLEWCQRS--SQCPMCWQPISLKDATSQELLEAVE   94 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~--CI~~Wl~~s--~sCPvCR~~l~~kd~~~~~ll~~ve   94 (350)
                      +.|||-+..+  ..|.+-..|.|.-|++  -+..+..+.  -.||+|.+.+...++.....+..+.
T Consensus       250 L~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL  313 (371)
T 3i2d_A          250 LQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL  313 (371)
T ss_dssp             SBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred             ecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence            4699888777  5677778999985554  344444333  4699999999998888776665554

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=86.10  E-value=0.55  Score=46.01  Aligned_cols=60  Identities=15%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             cccccccccccCCCCeeeecCCcccc--HHHHHHHHhcC--CCCCCCCcCCCCCCcchHHHHHHHH
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFH--LQCVLEWCQRS--SQCPMCWQPISLKDATSQELLEAVE   94 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC--~~CI~~Wl~~s--~sCPvCR~~l~~kd~~~~~ll~~ve   94 (350)
                      +.|||-+..+  ..|.+-..|.|.-|  +.-+..+..+.  -.||+|.+.+...++.....+..+.
T Consensus       216 L~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL  279 (360)
T 4fo9_A          216 LMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL  279 (360)
T ss_dssp             SBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred             eeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence            4699888777  55677789999844  44444444433  4699999999998888776666554

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=84.24  E-value=0.61  Score=36.52  Aligned_cols=36  Identities=28%  Similarity=0.627  Sum_probs=27.4

Q ss_pred             CCccccccccccccCCCCeeeecC----CccccHHHHHHHHhc
Q 018812           30 SCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQR   68 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~C----gH~FC~~CI~~Wl~~   68 (350)
                      .-.+.|.+|.+.+.+.   ....|    .|.||+.|-+..+++
T Consensus        13 ~a~l~CtlC~erLEdt---HFVQCPsv~~HkFCFpCsr~sIk~   52 (93)
T 2cs3_A           13 SGPLCCTICHERLEDT---HFVQCPSVPSHKFCFPCSRESIKA   52 (93)
T ss_dssp             CCSCCCSSSCSCCSST---TSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CCeeEeecchhhhccC---ceeeCCCccCCeeeccccHHHHHh
Confidence            3457899999999653   22244    699999999999875

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=83.17  E-value=1.1  Score=35.33  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=24.1

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHH
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW   65 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~W   65 (350)
                      -..|+.|.||--.- ..+..-.--|+-+||..|+.+.
T Consensus        12 ~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           12 VVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence            34588999996332 2221222358899999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-14
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-14
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-13
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	6e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	7e-12
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-09
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	1e-08
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	3e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	1e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	7e-06

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 65.4 bits (159), Expect = 2e-14
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80
          +  + C ICLE+ S  + S    C H F   C+  W +++  CP+C  P+ 
Sbjct: 3  TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
             C++CL E  + +    +  C H FH +CV  W    S CP+C   +
Sbjct: 5  GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 2e-13
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 15/69 (21%)

Query: 29 DSCDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCP 73
          D   D C+IC     +                       C H FH  C+  W +    CP
Sbjct: 18 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 77

Query: 74 MCWQPISLK 82
          +  +    +
Sbjct: 78 LDNREWEFQ 86

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 6e-12
 Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 3/59 (5%)

Query: 32 DDACSICLEEFSESDPS--TVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDATSQ 87
          D  C  C      +      V  C H     CV       +  CP C  P+   +   Q
Sbjct: 3  DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 7e-12
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 12 PEDHMTSAAAFVEGGIQ-DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RS 69
          P+DH+       E   +  S    C IC E   +     +  C H     C+  W +   
Sbjct: 2  PQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEG 58

Query: 70 SQCPMCWQPISLKD 83
            CP C   I   +
Sbjct: 59 QGCPFCRCEIKGTE 72

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 2e-09
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 35 CSICLEEFSESDPS-TVTSCKHEFHLQCVLEW-CQRSSQCPMCWQPIS 80
          C +C+E     D +    +C ++    C        +  CP C +P  
Sbjct: 3  CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDATS 86
          C IC    ++      TSCKH F   C+L   +   S CP C  P    D  S
Sbjct: 26 CQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 13/51 (25%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85
          C  C  E        +  C H     C+        QCP+C  P  L   T
Sbjct: 9  CQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT 53

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 35  CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS---QCPMCWQPISLKD-ATSQELL 90
           C ICLE   E      T C H F   C+L+   +     QCP+C   I+ +    S    
Sbjct: 24  CPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 91  EAVEQERSIRA 101
           + VE+   I  
Sbjct: 81  QLVEELLKIIC 91

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 48.7 bits (115), Expect = 1e-08
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 27 IQDSCDDACSICLEEFSESD--PSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLK 82
          ++D     C IC EE           T      H  C+  W   S  + C +C    + +
Sbjct: 1  MEDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (112), Expect = 3e-08
 Identities = 7/49 (14%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
          C+I  +      P      +  F    + ++ + +   P+  +P+S+++
Sbjct: 3  CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 35  CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELL-EAV 93
           CS C       +P  +  C+H F   CV +       CP+C+ P  ++D      L   +
Sbjct: 25  CSRCTNILR--EPVCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAWIQDLKINRQLDSMI 80

Query: 94  EQERSIR 100
           +    +R
Sbjct: 81  QLCSKLR 87

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ--------CPM--CWQPISL 81
             C +CL E+     +T+  C+  F   C+ ++ +   +        CP   C +   L
Sbjct: 5  SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64

Query: 82 KDATSQELLEAVEQER 97
          ++   + ++ A   +R
Sbjct: 65 QENEIECMVAAEIMQR 80

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 7e-06
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 20/80 (25%)

Query: 27 IQDSCDDACSICLEEF---------------SESDPSTVTSCKHEFHLQCVLEWCQRSS- 70
          ++ + ++ C IC+E+                       +T C H FHL C+L      + 
Sbjct: 20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK 79

Query: 71 ----QCPMCWQPISLKDATS 86
              QCP C      K  T 
Sbjct: 80 DGSLQCPSCKTIYGEKTGTQ 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.44
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.35
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.26
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.24
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.24
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.22
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.21
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.21
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.2
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.18
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.17
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.15
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.02
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.01
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.92
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.29
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	85.27
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	84.27
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	82.06

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.44  E-value=1.9e-14  Score=103.76  Aligned_cols=50  Identities=30%  Similarity=0.798  Sum_probs=43.4

Q ss_pred             CccccccccccccCCCCeeee-cCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           31 CDDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl-~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      ++.+|+||++.|..++.+..+ .|+|.||..||..|++.+..||+||+.|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            356899999999876666554 69999999999999999999999999764

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.35  E-value=1.4e-13  Score=102.73  Aligned_cols=47  Identities=34%  Similarity=0.906  Sum_probs=42.1

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS   80 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~   80 (350)
                      -+.|+||++.|  .+++++++|+|.||..||..|++.+..||+||..+.
T Consensus         5 ~d~C~IC~~~~--~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCccCCcCc--cCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            45799999999  456778899999999999999999999999999875

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=100.13  Aligned_cols=49  Identities=24%  Similarity=0.643  Sum_probs=42.1

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD   83 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd   83 (350)
                      ...|+||++.+.+   +++++|||.||..||..|+.. .+.||+||+.|....
T Consensus        23 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            4579999999844   788899999999999999974 568999999997644

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.8e-12  Score=95.91  Aligned_cols=54  Identities=24%  Similarity=0.448  Sum_probs=42.7

Q ss_pred             CccccccccccccCC--CCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCc
Q 018812           31 CDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA   84 (350)
Q Consensus        31 ~d~~C~ICle~f~~~--~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~   84 (350)
                      ++..|+||++.+...  ....+++|+|.||..||..|+.. +..||+||+.+...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            468999999975322  23466799999999999999965 5679999999876554

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-12  Score=100.84  Aligned_cols=52  Identities=23%  Similarity=0.632  Sum_probs=43.0

Q ss_pred             CccccccccccccCCC---------------CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           31 CDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~---------------~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      .++.|+||++.+....               .+.+++|+|.||..||..|++.+.+||+||+.+..+
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   86 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ   86 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccccc
Confidence            4567999998874321               356789999999999999999999999999988653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.1e-12  Score=94.39  Aligned_cols=50  Identities=14%  Similarity=0.288  Sum_probs=42.8

Q ss_pred             cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812           33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA   84 (350)
Q Consensus        33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~   84 (350)
                      +.|+||++.+.  +++....|||.||..||.+|++.+..||+||+++...++
T Consensus         1 l~C~Ic~~~~~--~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           1 MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCCccCCchHH--hcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            47999999994  444445799999999999999999999999999987665

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=3.5e-12  Score=103.41  Aligned_cols=55  Identities=31%  Similarity=0.652  Sum_probs=42.8

Q ss_pred             CCCCccccccccccccCC---------------CCeeeecCCccccHHHHHHHHhcC-----CCCCCCCcCCCCC
Q 018812           28 QDSCDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLK   82 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~---------------~~~~vl~CgH~FC~~CI~~Wl~~s-----~sCPvCR~~l~~k   82 (350)
                      +...++.|+||++.|...               ..+.+++|+|.||..||..|+...     .+||+||..+..+
T Consensus        21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            444577899999987431               234678999999999999999753     4799999987654

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.2e-12  Score=91.58  Aligned_cols=49  Identities=20%  Similarity=0.459  Sum_probs=40.2

Q ss_pred             cccccccccccCCCC-eeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCC
Q 018812           33 DACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL   81 (350)
Q Consensus        33 ~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~   81 (350)
                      .+|+||++.|...+. +.+++|+|.||..||..|++. +..||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            379999999965443 355699999999999999986 4579999998864

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=2.9e-12  Score=100.28  Aligned_cols=51  Identities=33%  Similarity=0.628  Sum_probs=43.3

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDAT   85 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~   85 (350)
                      +..|+||++.|.+   +++++|||.||..||.+|++. ...||+||.++...++.
T Consensus        23 ~l~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             CcCCccCCcchhc---ceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhcc
Confidence            4689999999944   778899999999999999975 45799999998876543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2e-12  Score=103.46  Aligned_cols=50  Identities=34%  Similarity=0.701  Sum_probs=41.6

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC---CCCCCCCcCCCCCCc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKDA   84 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s---~sCPvCR~~l~~kd~   84 (350)
                      .+.|+||++.|.  + ++.++|||.||..||..|+...   ..||+||..+...++
T Consensus        21 ~l~CpIC~~~~~--~-pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l   73 (103)
T d1jm7a_          21 ILECPICLELIK--E-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (103)
T ss_dssp             HTSCSSSCCCCS--S-CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CcCCCccCchhC--C-eEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhC
Confidence            578999999994  3 5567999999999999999764   379999999876543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.4e-12  Score=101.91  Aligned_cols=58  Identities=26%  Similarity=0.637  Sum_probs=47.4

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV   93 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v   93 (350)
                      +.+|+||++.|  .+++++++|||.||..||..|+.  ..||+||..+...++..+..+..+
T Consensus        22 ~l~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~l   79 (97)
T d1jm7b_          22 LLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSM   79 (97)
T ss_dssp             TTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHH
T ss_pred             cCCCccCCchh--hcCceeCCCCCchhHHHHHHHHh--ccccccCCcCchhhCcccHHHHHH
Confidence            57999999999  45666679999999999999985  459999999988777766555443

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.17  E-value=9.7e-12  Score=94.58  Aligned_cols=61  Identities=16%  Similarity=0.321  Sum_probs=49.2

Q ss_pred             CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHH
Q 018812           29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEA   92 (350)
Q Consensus        29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~   92 (350)
                      -.+++.|+||++.|.+   +++++|||.||..||..|+..+ ..||.|+..+...++.++..+..
T Consensus         5 iP~~l~CpIc~~~m~d---PV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~   66 (78)
T d1t1ha_           5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS   66 (78)
T ss_dssp             CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHH
T ss_pred             CCccCCCcCcCchhhC---ceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHH
Confidence            3458999999999944   5678999999999999999764 57999999998877665544433

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.2e-11  Score=94.50  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             CCccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812           30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVEQ   95 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~~ll~~ve~   95 (350)
                      .+++.|+||++.|.+   +++++|||.||..||..|+.. ...||+|+..+...++.++..+....+
T Consensus         5 P~~l~CpIc~~l~~d---Pv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~   68 (80)
T d2c2la2           5 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVID   68 (80)
T ss_dssp             CSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHH
T ss_pred             CccccCcCcCchhhh---hcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHH
Confidence            357899999999944   667899999999999999975 557999999998877777666555443

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.7e-11  Score=88.38  Aligned_cols=45  Identities=27%  Similarity=0.530  Sum_probs=38.1

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK   82 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k   82 (350)
                      .+.|+||++.|.+   +++++|||.||..||..|   +..||+||+.+...
T Consensus         6 ~l~C~IC~~~~~~---p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T d1bora_           6 FLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             CCCCcccCcccCC---CEEecCCCHHhHHHHHcC---CCcCcCCCCcccCC
Confidence            4699999999944   677899999999999765   56899999998754

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.6e-10  Score=91.98  Aligned_cols=61  Identities=8%  Similarity=0.048  Sum_probs=50.4

Q ss_pred             CccccccccccccCCCCeeeecCC-ccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHH
Q 018812           31 CDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVE   94 (350)
Q Consensus        31 ~d~~C~ICle~f~~~~~~~vl~Cg-H~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve   94 (350)
                      +++.||||+++|.+   +++++|+ |.||..||..|+..+..||+|++++...++.++..+....
T Consensus        21 ~~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I   82 (98)
T d1wgma_          21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKI   82 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHH
T ss_pred             HHhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHH
Confidence            36899999999944   6666766 5899999999999999999999999988887776555443

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.92  E-value=3.6e-10  Score=81.75  Aligned_cols=54  Identities=22%  Similarity=0.431  Sum_probs=39.4

Q ss_pred             CCCCccccccccccccCCCCe--eeecCCccccHHHHHHHHhc--CCCCCCCCcCCCC
Q 018812           28 QDSCDDACSICLEEFSESDPS--TVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISL   81 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~--~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~l~~   81 (350)
                      ++++...|.||++.+.+....  ....|+|.||..||..|+..  +.+||+||+.+..
T Consensus         2 eded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            466678999999988432110  11234699999999999954  5689999998764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.2e-07  Score=71.96  Aligned_cols=46  Identities=22%  Similarity=0.577  Sum_probs=36.4

Q ss_pred             ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--------CCCCCCCc
Q 018812           32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--------SQCPMCWQ   77 (350)
Q Consensus        32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--------~sCPvCR~   77 (350)
                      ...|+||++.+...+.+.+++|+|.||..||..|+..+        -.||.|..
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            46899999998654556667899999999999999531        25998654

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.35  Score=35.10  Aligned_cols=36  Identities=28%  Similarity=0.627  Sum_probs=27.4

Q ss_pred             CCccccccccccccCCCCeeeecC----CccccHHHHHHHHhc
Q 018812           30 SCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQR   68 (350)
Q Consensus        30 ~~d~~C~ICle~f~~~~~~~vl~C----gH~FC~~CI~~Wl~~   68 (350)
                      .....|.||.+-+.+.   ....|    .|.||+.|-+..++.
T Consensus         6 ~~~l~CtlC~erLEdt---HFVQCPsv~~HkFCFpCsr~sik~   45 (80)
T d2cs3a1           6 SGPLCCTICHERLEDT---HFVQCPSVPSHKFCFPCSRESIKA   45 (80)
T ss_dssp             CCSCCCSSSCSCCSST---TSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CCceeeeeehhhhcCC---ceEeCCCCcCCceeccccHHHHHh
Confidence            3457999999999653   22244    699999999999865

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.27  E-value=0.33  Score=36.27  Aligned_cols=37  Identities=22%  Similarity=0.519  Sum_probs=26.1

Q ss_pred             CCCCccccccccccccCCCCeeeecCCccccHHHHHHH
Q 018812           28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW   65 (350)
Q Consensus        28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~W   65 (350)
                      +-..|..|.|| +.|......-.--|+-+||..|+.+.
T Consensus        11 ~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          11 PVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCcCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence            44568899999 66644322222347899999999987

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.06  E-value=0.27  Score=32.55  Aligned_cols=44  Identities=25%  Similarity=0.578  Sum_probs=28.4

Q ss_pred             ccccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCCCc
Q 018812           34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQ   77 (350)
Q Consensus        34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvCR~   77 (350)
                      .|.||...-....-+.--.|...||..|+..-+...    -.||.|+.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            588887653222222224788999999997765432    35999975