Citrus Sinensis ID: 018867

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQVS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHcccEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHEEEEHHHHHHHHEEEHHEcc
Coil and Loop (DISEMBL)
mttvvptseedpaLAVVRFTSelawadagpeAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFskvsdkdlECIFTVICNlvtkpesldEVHEMTKLISGkiiqqpndkpaMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATfsgedahtmDEAKEEAVRTIIEFvkspdmfqcdlldmpaigqlendAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVdlgsnesgqipyglIKDTLQVYFLTFLLLDLWYGLFVVNVLQVS
Flexible Loop (DISEMBL)
mttvvptseedpalaVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISgkiiqqpndkpAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVlkesrssskdsFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQVS
Low Complexity Region (SEG)
MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQVS
Disordered region (IsUnstruct)
*************LAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLK*********FKFLTKYLATFSGE*********EEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQ**
Disordered Region (DISOPRED)
*TTVVPTSEEDPALAVVRFTSELAW*****************************DLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLIS**************LKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGE********KEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSA*****GLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQV*
Disordered Region (DISEMBL)
**********DPALAVVRFTSELAWAD*********VNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQVS
Disordered Region (DISPRO)
*TTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQVS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFLLLDLWYGLFVVNVLQVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q54KZ8	401	Eukaryotic translation in	yes	no	0.756	0.658	0.366	1e-41
Q5R8C4	374	Eukaryotic translation in	yes	no	0.776	0.724	0.248	2e-18
Q7L2H7	374	Eukaryotic translation in	yes	no	0.776	0.724	0.248	2e-18
Q5ZJ64	374	Eukaryotic translation in	yes	no	0.776	0.724	0.251	4e-18
Q99JX4	374	Eukaryotic translation in	yes	no	0.776	0.724	0.244	1e-17
Q3T148	373	Eukaryotic translation in	yes	no	0.773	0.723	0.248	2e-17
A7SPX9	379	Eukaryotic translation in	N/A	no	0.676	0.622	0.265	8e-17
Q7SEK1	434	Eukaryotic translation in	N/A	no	0.575	0.463	0.293	3e-16
Q7T3B0	375	Eukaryotic translation in	yes	no	0.779	0.725	0.235	2e-15
Q6DK91	374	Eukaryotic translation in	yes	no	0.776	0.724	0.234	2e-15

>sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/278 (36%), Positives = 165/278 (59%), Gaps = 14/278 (5%)

Query: 56  LASLMLTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPND 113
           L+ ++    + +F   K SDKD+E  F VI  ++ K E+ DE++ +++ I   +   P +
Sbjct: 50  LSKIVSNETEFLFKECKDSDKDIEGFFNVILTILHKLENEDEINIVSQKIRDSLSAHPTE 109

Query: 114 KPAMRLKILFNLYNLLENPYS--RFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNI 171
              +++KIL NL+N  + P S  R+ ++   + LA +    E +      IDS+L++WN+
Sbjct: 110 NSQLKIKILTNLFNSFQ-PKSTQRYDIFFALVKLASDSNNLEFVKYQITDIDSWLEDWNV 168

Query: 172 DIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFV 231
            I+ KR L+  I+N+ KE +     S +FL KYL TF+ ED+    EA+E+AVR  IE +
Sbjct: 169 SIQQKRKLYKLISNIFKEKQRML--SHQFLVKYLQTFTKEDSQ---EAQEDAVRVCIESI 223

Query: 232 KSPDMFQCD-LLDMPAIGQLENDAKYAS--VYQLLKIFLTQRLDGYLEFQAGNSALLKSY 288
              +++Q D LLD+PA+  LE     A+   Y+L+KIF T++LD +L+FQ  N   L + 
Sbjct: 224 SLQELYQSDYLLDLPAVQYLEGSTVSANSLTYELMKIFATEQLDSFLQFQQKNPNFLSTI 283

Query: 289 GLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           GL ++DC+ K+RL+SL  L S E  ++PY LI   LQ+
Sbjct: 284 GLSNDDCLQKIRLLSLATLTS-EQSKVPYSLISKMLQI 320

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5R8C4|EIF3M_PONAB Eukaryotic translation initiation factor 3 subunit M OS=Pongo abelii GN=EIF3M PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 154/286 (53%), Gaps = 15/286 (5%)

Query: 44  AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
           ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct: 30  SEENSEGGLHIDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query: 104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
             K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct: 87  CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query: 162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
           +  ++ +WN+  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct: 147 VRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query: 222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
           +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct: 203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query: 281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct: 259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Pongo abelii (taxid: 9601)

>sp|Q7L2H7|EIF3M_HUMAN Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 154/286 (53%), Gaps = 15/286 (5%)

Query: 44  AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
           ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct: 30  SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query: 104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
             K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct: 87  CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query: 162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
           +  ++ +WN+  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct: 147 VRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query: 222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
           +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct: 203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query: 281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct: 259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. May favor virus entry in case of infection with herpes simplex virus 1 (HSV1) or herpes simplex virus 2 (HSV2).

Homo sapiens (taxid: 9606)

>sp|Q5ZJ64|EIF3M_CHICK Eukaryotic translation initiation factor 3 subunit M OS=Gallus gallus GN=EIF3M PE=2 SV=1

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 154/286 (53%), Gaps = 15/286 (5%)

Query: 44  AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
           ++E+   G  +DLA + +   D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct: 30  SEENSEGGLHVDLAQI-IEVCDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query: 104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
             K+++ +  ++P++RL++L NL++ ++ N   R+ VY   L +A +    ++I     +
Sbjct: 87  CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLLKVASSCGAIQYIPTELDQ 146

Query: 162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
           +  ++ +WN+    K  L   + +VL + + S   + K + + L +++ ++A    +A+ 
Sbjct: 147 VRKWISDWNLSTDKKHTLLRLLYDVLVDCKKSDT-AAKVMVELLGSYTEDNA---SQARV 202

Query: 222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
           +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct: 203 DAHRCIVRALKDPNTFLFDHLLALKPVKFLEGEL----IHDLLTIFVSAKLVSYVKFYQN 258

Query: 281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct: 259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Gallus gallus (taxid: 9031)

>sp|Q99JX4|EIF3M_MOUSE Eukaryotic translation initiation factor 3 subunit M OS=Mus musculus GN=Eif3m PE=2 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 153/286 (53%), Gaps = 15/286 (5%)

Query: 44  AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
           ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct: 30  SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query: 104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
             K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct: 87  CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query: 162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
           +  ++ +W +  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct: 147 VRKWISDWKLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query: 222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
           +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct: 203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query: 281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct: 259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Mus musculus (taxid: 10090)

>sp|Q3T148|EIF3M_BOVIN Eukaryotic translation initiation factor 3 subunit M OS=Bos taurus GN=EIF3M PE=2 SV=2

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 154/286 (53%), Gaps = 16/286 (5%)

Query: 44  AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
           ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct: 30  SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query: 104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
             K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct: 87  CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query: 162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
           +  ++ +WN+  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct: 147 VRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query: 222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
           +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct: 203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKL-AYVKFYQN 257

Query: 281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct: 258 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 302

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Bos taurus (taxid: 9913)

>sp|A7SPX9|EIF3M_NEMVE Eukaryotic translation initiation factor 3 subunit M OS=Nematostella vectensis GN=v1g192238 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 126/249 (50%), Gaps = 13/249 (5%)

Query: 73  DKDLECIFTVICNLV-TKPESLDE-VHEMTKLISGKIIQQPNDKPAMRLKILFNLYN-LL 129
           D +LE +   I +LV   PE  +E + +    +   + +  N   A RL++L  L++ L 
Sbjct: 57  DAELESVMNSILSLVLVVPEKRNELIKKCCDKLKANMSEDENSSAAARLRVLSVLFSGLP 116

Query: 130 ENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKE 189
           E    R  VY   L +A    + + I    + +  +L  W++D   +R +F  +   L +
Sbjct: 117 EKDPMRHEVYCTQLTIAAKASLVDDIPTELELVKGWLGLWDVDADQRRQVFRLLHGALHD 176

Query: 190 SRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LLDMPAIG 248
            + S + S K + + L+T++ E+A     A+E+A   ++  +  P++   D +L +  + 
Sbjct: 177 EKRSEEAS-KVMIELLSTYTDENASA---AREDAKSCVVSCLTKPNVLIMDNILSLKPVA 232

Query: 249 QLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLG 308
            L+ D     +YQLL+IF++  +  Y +F   N+  + S GL HE  + KMR+++L+ +G
Sbjct: 233 VLQGDP----IYQLLQIFVSGDVQDYKKFYDSNTDFINSIGLSHEMNLKKMRVLTLMSIG 288

Query: 309 SNESGQIPY 317
             E+ +I Y
Sbjct: 289 -KETDEISY 296

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Nematostella vectensis (taxid: 45351)

>sp|Q7SEK1|EIF3M_NEUCR Eukaryotic translation initiation factor 3 subunit M OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02813 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 10/211 (4%)

Query: 122 LFNLYNLLE--NPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRAL 179
           L  ++NLL+  NP  RF V+M+ +         + + P  K ++ +L+EW  D + +R L
Sbjct: 108 LTTIFNLLDKSNPL-RFNVFMQIVRFIRQNSQFDLLKPRLKNVEGWLQEWKSDSESQRKL 166

Query: 180 FLGIANVLKESRSSSKDSFKFLTKYLATF--SGEDAHTMDEAKEEAVRTIIEFVKSPDMF 237
           ++ +++   +     ++S+ +L K LATF    +D    DEA++ ++R +   + SP  F
Sbjct: 167 YVEVSDAANDG-GDQEESYFYLLKALATFDRDNQDEVASDEAQKLSLRALRMAISSPTRF 225

Query: 238 Q-CDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCI 296
              DL  +P++  L +     S  QLL IF  Q L+ Y +F+  +   +++  L HE   
Sbjct: 226 DFNDLRSLPSVHALSDSHPVYS--QLLDIFTEQDLEDYNDFRDEHQGWIENEKLDHEKLQ 283

Query: 297 AKMRLMSLVDL-GSNESGQIPYGLIKDTLQV 326
            KMRL++   L  S  + +IPY  I   LQ+
Sbjct: 284 RKMRLLTFASLAASTPNREIPYASIAKALQI 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q7T3B0|EIF3M_DANRE Eukaryotic translation initiation factor 3 subunit M OS=Danio rerio GN=eif3m PE=2 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 146/285 (51%), Gaps = 13/285 (4%)

Query: 44  AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
           ++E+   G  +DLA + + + D+   K  DKD+E +   I +L+   E+  +   +  L 
Sbjct: 30  SEENSEGGLHVDLAQI-IEACDVCL-KDDDKDVESVMNSIVSLLLILETEKQEALIESLC 87

Query: 104 SGKIIQQPNDKPAMRLKILFNLYNLL-ENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKI 162
              +  +  ++P++R+++L NL++ + EN   R  VY   + +A        +     ++
Sbjct: 88  EKLVKFREGERPSLRMQLLSNLFHGMDENTPVRHTVYCSLIKVAATCNAITFMPTDLDQV 147

Query: 163 DSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEE 222
             ++ +WN++ + K  L   +   L + + S   + K + + L +++ ++A    +A+ +
Sbjct: 148 RKWIVDWNLNTEKKHTLLRLVYEALVDCKKSEA-AAKVMVELLGSYTEDNA---SQARVD 203

Query: 223 AVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGN 281
           A R I+  +K P+ +  D LL +  +  LE +     ++ LL IF++ +L  Y++F   N
Sbjct: 204 AHRCIVRALKDPNTYLFDHLLALKPVRFLEGEL----IHDLLTIFVSAKLISYVKFYQSN 259

Query: 282 SALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
              ++S GL HE  ++KMRL++ + +   E  +I +  ++  LQ+
Sbjct: 260 KDFIESLGLSHEQNMSKMRLLTFMGMAV-EMKEISFETMQQELQI 303

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Danio rerio (taxid: 7955)

>sp|Q6DK91|EIF3M_XENTR Eukaryotic translation initiation factor 3 subunit M OS=Xenopus tropicalis GN=eif3m PE=2 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 150/286 (52%), Gaps = 15/286 (5%)

Query: 44  AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
           ++E+   G  +DLA + + + D+   K  DKD+E     + +LV   E+ D+   + + +
Sbjct: 30  SEENSEGGLHIDLAQI-IEACDVCL-KDDDKDVESSMNSVVSLVLILET-DKQEALIESL 86

Query: 104 SGKIIQ-QPNDKPAMRLKILFNLYNLLENPY-SRFFVYMKALNLAVNGKVTEHIIPSFKK 161
             K+++ +  ++P++RL++L NL++ ++    +R+ VY   + +A       +I     +
Sbjct: 87  CEKLVKFREGERPSLRLQLLSNLFHGMDKSIPARYTVYCGLIKVAATCGAIIYIPTDLDQ 146

Query: 162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
           +  ++ +WN+  + K  +   +   L + + S  ++ K + + L +++ ++A    +A+ 
Sbjct: 147 VRKWISDWNLSTEKKHIVLRLLYEALVDCKKSD-EAAKVMVELLGSYTDDNA---SQARL 202

Query: 222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
           +A + I+  +K P  F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct: 203 DAHKCIVRALKDPKAFLLDHLLALKPVKFLEGEL----IHDLLTIFVSAKLSSYVKFYQN 258

Query: 281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           N   + S GL HE  + KMRL++ + +  + + +I +  I+  LQ+
Sbjct: 259 NKDFIDSLGLSHEQNMEKMRLLTFMGMAVD-NKEISFDTIQQELQI 303

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
225451754	410	PREDICTED: eukaryotic translation initia	0.934	0.795	0.822	1e-158
224141089	439	predicted protein [Populus trichocarpa]	0.934	0.742	0.804	1e-155
255585714	412	cop9 complex subunit 7a, putative [Ricin	0.934	0.791	0.817	1e-153
118488213	412	unknown [Populus trichocarpa]	0.934	0.791	0.792	1e-152
449481381	410	PREDICTED: eukaryotic translation initia	0.934	0.795	0.794	1e-152
449447424	417	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.931	0.779	0.793	1e-151
78191456	410	unknown [Solanum tuberosum]	0.934	0.795	0.745	1e-148
77416971	398	unknown [Solanum tuberosum]	0.931	0.816	0.733	1e-144
363808002	410	uncharacterized protein LOC100786194 [Gl	0.934	0.795	0.736	1e-143
363806844	410	uncharacterized protein LOC100788645 [Gl	0.934	0.795	0.720	1e-142

>gi|225451754|ref|XP_002280247.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M [Vitis vinifera] gi|296082198|emb|CBI21203.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/326 (82%), Positives = 294/326 (90%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTT+VPTSEEDPAL+VVR+T+E++WADAGPE AE QV RLC+EAQE MV GRW+DLASLM
Sbjct: 1   MTTLVPTSEEDPALSVVRYTAEISWADAGPEVAEPQVTRLCMEAQECMVRGRWLDLASLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           LTSADLMFSK SDKDLECIFTVICNLVTK ES DE  EM K IS KI QQPNDK A+RLK
Sbjct: 61  LTSADLMFSKASDKDLECIFTVICNLVTKSESPDEALEMAKFISAKITQQPNDKAALRLK 120

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
           ILFNLYNLLENPYSRF+VYMKALNLAVNGKVTEHIIPSFK +DSFLKEWNI I D+RAL+
Sbjct: 121 ILFNLYNLLENPYSRFYVYMKALNLAVNGKVTEHIIPSFKMMDSFLKEWNIGILDQRALY 180

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L I+N+LKE++S  KD FKFLTKYLATFSGEDA+TM EAKEEAVRTI+EFV++PDMFQCD
Sbjct: 181 LNISNILKENKSLGKDYFKFLTKYLATFSGEDAYTMSEAKEEAVRTIMEFVRAPDMFQCD 240

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLDMPA+GQLE DAKYA VYQLLKIFLTQRLD YL+F A NS LLKSYGLVHEDCI KMR
Sbjct: 241 LLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLDFHAANSTLLKSYGLVHEDCITKMR 300

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
           LMSLVDLGS+ES QIPY LIKDTL++
Sbjct: 301 LMSLVDLGSDESCQIPYSLIKDTLRI 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141089|ref|XP_002323907.1| predicted protein [Populus trichocarpa] gi|222866909|gb|EEF04040.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/328 (80%), Positives = 296/328 (90%), Gaps = 2/328 (0%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTTVVPTSEEDPAL+VVRFTSELAW+DAGPE  E+QV+RLC+EAQE MVM RW+DL SLM
Sbjct: 1   MTTVVPTSEEDPALSVVRFTSELAWSDAGPEVMEQQVSRLCVEAQECMVMNRWLDLTSLM 60

Query: 61  LTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMR 118
           LTSAD++FS  KVS+KDLECIFTVICNLVTK  S DE  EM KLI  KIIQQP+DKPA+R
Sbjct: 61  LTSADIVFSNSKVSEKDLECIFTVICNLVTKSRSPDEELEMAKLICAKIIQQPSDKPALR 120

Query: 119 LKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRA 178
           LKILFNLYNLL+N Y RF+V+MKAL LAV+GKVTEH+IPSFKKIDSFLKEWN++++D+R 
Sbjct: 121 LKILFNLYNLLDNAYCRFYVFMKALTLAVSGKVTEHVIPSFKKIDSFLKEWNLEVQDQRE 180

Query: 179 LFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQ 238
           LFL +AN LK+S+SS+KDSFKFLTKYLATFS ED + M EAKEEA RTIIEFVK+PDMFQ
Sbjct: 181 LFLSVANALKDSKSSAKDSFKFLTKYLATFSDEDTYKMGEAKEEAARTIIEFVKAPDMFQ 240

Query: 239 CDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAK 298
           CDLLDMPA+GQLE DAKYA VYQLLKIFLTQRLD YLEFQA NSALLKSYGLVHEDCIAK
Sbjct: 241 CDLLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFQAANSALLKSYGLVHEDCIAK 300

Query: 299 MRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           MRLMSLVDL S+ESG+IPY LIKDTL++
Sbjct: 301 MRLMSLVDLASHESGRIPYALIKDTLRI 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585714|ref|XP_002533539.1| cop9 complex subunit 7a, putative [Ricinus communis] gi|223526589|gb|EEF28842.1| cop9 complex subunit 7a, putative [Ricinus communis]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/328 (81%), Positives = 302/328 (92%), Gaps = 2/328 (0%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTTVVPTSEEDPALAVVRFTSELAWADAGPE AE+QV+RLC+EAQE MV+GRW+DLASL+
Sbjct: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEVAEQQVSRLCVEAQECMVIGRWLDLASLI 60

Query: 61  LTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMR 118
           LTSAD++FS  KVS+KDLECIFTVICNLVTKP+S DE  EM KLI GKIIQQP DKPA+R
Sbjct: 61  LTSADVIFSNSKVSEKDLECIFTVICNLVTKPDSPDEALEMAKLICGKIIQQPADKPALR 120

Query: 119 LKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRA 178
           LKILFNLYNLLE+PYSRF+VY+KAL+LA+NGKVTEH++PSFK I+SFLKEWN+++KD+R 
Sbjct: 121 LKILFNLYNLLESPYSRFYVYLKALDLALNGKVTEHMVPSFKTIESFLKEWNLEVKDQRE 180

Query: 179 LFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQ 238
           LFL I+NVL+ES+SS KDSFKFLTKYLATF+GEDA+ M EAKEEAVRTIIEFVKSPDMFQ
Sbjct: 181 LFLSISNVLRESKSSGKDSFKFLTKYLATFAGEDAYAMGEAKEEAVRTIIEFVKSPDMFQ 240

Query: 239 CDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAK 298
           CDLLDMPA+GQLE D KYA VYQLLKIFLTQRLD YLEFQ  NSALLKSY LVHEDCIAK
Sbjct: 241 CDLLDMPAVGQLEKDGKYALVYQLLKIFLTQRLDAYLEFQTANSALLKSYDLVHEDCIAK 300

Query: 299 MRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           MRLMSL+DL  +ESG+IPY LIKDTL++
Sbjct: 301 MRLMSLLDLSLDESGRIPYTLIKDTLRI 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488213|gb|ABK95926.1| unknown [Populus trichocarpa]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/328 (79%), Positives = 296/328 (90%), Gaps = 2/328 (0%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTTVVPTSEEDPAL+VVRFTSEL+W+DAGPE AE+QV+RLC+EAQE MV  RW+DL SLM
Sbjct: 1   MTTVVPTSEEDPALSVVRFTSELSWSDAGPEVAEQQVSRLCVEAQECMVRNRWLDLTSLM 60

Query: 61  LTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMR 118
           LTSAD++FS  KVS+KDLECIFTVICNLVTK ES DE  EM KLI  KIIQQP+DKP +R
Sbjct: 61  LTSADIVFSNSKVSEKDLECIFTVICNLVTKSESPDEELEMAKLICTKIIQQPSDKPVLR 120

Query: 119 LKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRA 178
           LKILFNLYNLL+N Y RF+VYMKALNLA++GKVTEHIIPS KKIDSFLKEWN++++D+R 
Sbjct: 121 LKILFNLYNLLDNVYCRFYVYMKALNLAMSGKVTEHIIPSCKKIDSFLKEWNLEVQDQRE 180

Query: 179 LFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQ 238
           LFL +AN LK+S+SS+KDSFKFLT+YLATFSGEDA+ M EAK+EA RTII+FVK+PDMFQ
Sbjct: 181 LFLCVANALKDSKSSAKDSFKFLTRYLATFSGEDAYKMGEAKDEAARTIIDFVKAPDMFQ 240

Query: 239 CDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAK 298
           CDLLDMPA+ QLE DAKYA VYQLLKIFLT RLD YLEFQA NSALLKSYGLVHEDCIAK
Sbjct: 241 CDLLDMPAVAQLEKDAKYALVYQLLKIFLTLRLDAYLEFQAVNSALLKSYGLVHEDCIAK 300

Query: 299 MRLMSLVDLGSNESGQIPYGLIKDTLQV 326
           MRL+SLVDL S+ESG+IPY LIKDTL++
Sbjct: 301 MRLISLVDLASHESGRIPYTLIKDTLRI 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481381|ref|XP_004156166.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Cucumis sativus]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/326 (79%), Positives = 288/326 (88%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           M TVV TSEED AL VVRF SELAWADAGPE AE QVNRLC+EAQE MV+GRW+DLASLM
Sbjct: 1   MATVVQTSEEDAALTVVRFASELAWADAGPETAEPQVNRLCVEAQECMVIGRWLDLASLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           LTSADL+FSKVS+KDLEC+FT+ICNLVTK  S DE  EM KLIS KI QQPNDKPA+RLK
Sbjct: 61  LTSADLIFSKVSEKDLECVFTIICNLVTKAGSPDESLEMAKLISAKICQQPNDKPALRLK 120

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
           ILFNLYNLLENPYSRF VYMKAL+LA  GK  EHIIP+ KKI+SFL+EWNI I ++R LF
Sbjct: 121 ILFNLYNLLENPYSRFHVYMKALDLAFKGKAPEHIIPTLKKIESFLREWNIGIVEQRELF 180

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L I+NVLKES+SS+ D FKFLTKYLATFSGEDA T+ EAKEEAV  I+EFVK+P+MF+CD
Sbjct: 181 LAISNVLKESKSSANDYFKFLTKYLATFSGEDASTLSEAKEEAVHAIVEFVKAPNMFKCD 240

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLDMPA+GQLE DAKY+ VYQLLKIFLTQRLD Y+EFQA NS+LLKSYGLVHEDCIAKMR
Sbjct: 241 LLDMPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQATNSSLLKSYGLVHEDCIAKMR 300

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
           L+SLVDLGSNES +IPY LIKDTLQ+
Sbjct: 301 LLSLVDLGSNESARIPYALIKDTLQI 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447424|ref|XP_004141468.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit M-like [Cucumis sativus]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/325 (79%), Positives = 287/325 (88%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           M TVV TSEED AL VVRF SELAWADAGPE AE QVNRLC+EAQE MV+GRW+DLASLM
Sbjct: 1   MATVVQTSEEDAALTVVRFASELAWADAGPETAEPQVNRLCVEAQECMVIGRWLDLASLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           LTSADL+FSKVS+KDLEC+FT+ICNLVTK  S DE  EM KLIS KI QQPNDKPA+RLK
Sbjct: 61  LTSADLIFSKVSEKDLECVFTIICNLVTKAGSPDESLEMAKLISAKICQQPNDKPALRLK 120

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
           ILFNLYNLLENPYSRF VYMKAL+LA  GK  EHIIP+ KKI+SFL+EWNI I ++R LF
Sbjct: 121 ILFNLYNLLENPYSRFHVYMKALDLAFKGKAPEHIIPTLKKIESFLREWNIGIVEQRELF 180

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L I+NVLKES+SS+ D FKFLTKYLATFSGEDA T+ EAKEEAV  I+EFVK+P+MF+CD
Sbjct: 181 LAISNVLKESKSSANDYFKFLTKYLATFSGEDASTLSEAKEEAVHAIVEFVKAPNMFKCD 240

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLDMPA+GQLE DAKY+ VYQLLKIFLTQRLD Y+EFQA NS+LLKSYGLVHEDCIAKMR
Sbjct: 241 LLDMPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQATNSSLLKSYGLVHEDCIAKMR 300

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQ 325
           L+SLVDLGSNES +IPY LIKDTL+
Sbjct: 301 LLSLVDLGSNESARIPYALIKDTLR 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78191456|gb|ABB29949.1| unknown [Solanum tuberosum]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 243/326 (74%), Positives = 287/326 (88%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTTVVPTSEEDP L+VVRFT+E++WADAG E AE +VNRLC+EAQ+ M+ GRW+DL SLM
Sbjct: 1   MTTVVPTSEEDPVLSVVRFTAEMSWADAGAETAEPEVNRLCVEAQKCMIEGRWLDLVSLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           L SAD++FSK S+KDLEC+FT++CNLV KPESLD+VHEM +LIS KIIQQPNDKPA+RLK
Sbjct: 61  LASADIIFSKASEKDLECVFTIMCNLVKKPESLDQVHEMAELISAKIIQQPNDKPALRLK 120

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
           ILFNLYNLLENPYSRF VY+K+LNLA  GKVTEHI+PS KK+D+FLKEWN+ +KD+R LF
Sbjct: 121 ILFNLYNLLENPYSRFCVYLKSLNLATAGKVTEHILPSIKKMDNFLKEWNLGVKDQRELF 180

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L I+N+LKE++ S+KDSF FLTKYL TFS EDA  M+EAKEEA R I++FV+SPDMF+CD
Sbjct: 181 LAISNILKENKGSTKDSFMFLTKYLETFSSEDASNMNEAKEEASRAIVDFVRSPDMFKCD 240

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLDMPAI QLE DA+Y  VYQLLKIFLTQRLD YL+F+A NSALLK+YGLVH+D I+KMR
Sbjct: 241 LLDMPAIAQLEKDAQYGPVYQLLKIFLTQRLDAYLDFEAANSALLKTYGLVHDDSISKMR 300

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
           LMSLVDLG NES QIPY +IK  LQ+
Sbjct: 301 LMSLVDLGLNESSQIPYSVIKQALQI 326

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416971|gb|ABA81881.1| unknown [Solanum tuberosum]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/326 (73%), Positives = 285/326 (87%), Gaps = 1/326 (0%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTTVVPTSEEDP L+VVRFT+E++WADAG E AE +VNRLC+EAQ+ M+ GRW+DL SLM
Sbjct: 1   MTTVVPTSEEDPVLSVVRFTAEMSWADAGAETAEPEVNRLCVEAQKCMIEGRWLDLVSLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           L SAD++FSK S+KDLEC+FT++ +L ++PESLD+VHEM +LIS KIIQQPNDKPA+RLK
Sbjct: 61  LASADIIFSKASEKDLECVFTIMLHL-SEPESLDQVHEMAELISAKIIQQPNDKPALRLK 119

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
           ILFNLYNLLENPYSRF VY+K+LNLA  G V EHI+PSFKK+D+FLKEWN+ +KD+R LF
Sbjct: 120 ILFNLYNLLENPYSRFCVYLKSLNLATAGXVIEHILPSFKKMDNFLKEWNLGVKDQRELF 179

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L I+N+LKE++ S+KDSF FLTKYL TFS EDA  M+EAKEEA R I++FV+SPDMF+CD
Sbjct: 180 LAISNILKENKGSTKDSFMFLTKYLETFSSEDASNMNEAKEEAARAIVDFVRSPDMFKCD 239

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLDMPAI QLE DA+Y  VYQLLKIFLTQRLD YL+F+A NSALLK+YGLVH DCI+KMR
Sbjct: 240 LLDMPAIAQLEKDAQYGPVYQLLKIFLTQRLDAYLDFEAANSALLKTYGLVHIDCISKMR 299

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
           LMSLVDLG NES QIPY +IK  LQ+
Sbjct: 300 LMSLVDLGLNESSQIPYSVIKQALQI 325

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808002|ref|NP_001241950.1| uncharacterized protein LOC100786194 [Glycine max] gi|255644746|gb|ACU22875.1| unknown [Glycine max]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/326 (73%), Positives = 289/326 (88%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTTVVPTSEED AL+VVRF SELAWADAGPE AE QV+ LC+EA+E +VMG+W++LASLM
Sbjct: 1   MTTVVPTSEEDAALSVVRFASELAWADAGPEVAEPQVSGLCMEAEEFIVMGKWLELASLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           +TSA+L+FSKVS+ D+E IFT+ICNLVTK E+ DEV E+ K+I+ KIIQQPN+KPA+RLK
Sbjct: 61  ITSAELVFSKVSETDIESIFTIICNLVTKTENPDEVMEIVKVITAKIIQQPNEKPAVRLK 120

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
            L NLYNLLE PY +F+VYMKALNLAVNGKVTE+IIPSFKKIDSFLKEW I I ++R LF
Sbjct: 121 TLINLYNLLETPYCQFYVYMKALNLAVNGKVTEYIIPSFKKIDSFLKEWKIGIPEQRELF 180

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L I+N+LKE++S SKD+FKFL+ YL+TFSGEDAH + EAKEEA R I+EFV++PD++QCD
Sbjct: 181 LTISNILKENKSMSKDAFKFLSNYLSTFSGEDAHVLSEAKEEAARAIVEFVRAPDIYQCD 240

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLD+PA+GQLE DAKYA +YQLLKIFLTQRLD YLE+QA NS LLK+YGLV E+CI+KMR
Sbjct: 241 LLDLPAVGQLEKDAKYALLYQLLKIFLTQRLDAYLEYQAANSTLLKNYGLVPEECISKMR 300

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
           LMSL+DL S+ SGQIPY LI+DTLQ+
Sbjct: 301 LMSLMDLTSDGSGQIPYALIRDTLQI 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806844|ref|NP_001242547.1| uncharacterized protein LOC100788645 [Glycine max] gi|255639778|gb|ACU20182.1| unknown [Glycine max]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 235/326 (72%), Positives = 288/326 (88%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           M TVVPTSEED AL+VVRF SELAWADAGPE AE QV+RLC+EA+E +VMG+W++LASLM
Sbjct: 1   MATVVPTSEEDAALSVVRFASELAWADAGPEVAEPQVSRLCVEAEEFIVMGKWLELASLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           +TSA+L+FSKVS+KD+E IFT+ICNLVTK E+ DEV E+ K+I+ KI+QQPN+KPA+RLK
Sbjct: 61  ITSAELIFSKVSEKDIESIFTIICNLVTKTENPDEVMEIVKVITTKILQQPNEKPAVRLK 120

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
           I+ +LYNLLE PY +F+VYMK LNLAV+GKVTEHIIPSF KID+FLK+W I I ++R LF
Sbjct: 121 IMISLYNLLETPYCQFYVYMKLLNLAVDGKVTEHIIPSFNKIDNFLKDWKIGIPEQRELF 180

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L ++N+LKE++S SKD+FKFLT YLATFSG+D+H + EAKEEA R I+EFV++PD+FQCD
Sbjct: 181 LAVSNILKENKSMSKDAFKFLTSYLATFSGDDSHVLSEAKEEAARAIVEFVRAPDVFQCD 240

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLD+PA+ QLE DAKYA +YQLLKIFLTQRLD YL++ A NS LLKSYGLVHE+CIAKMR
Sbjct: 241 LLDLPAVTQLEKDAKYALLYQLLKIFLTQRLDAYLDYHAANSTLLKSYGLVHEECIAKMR 300

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
           L+SLVDL S+ SGQIPY LI+DTLQ+
Sbjct: 301 LLSLVDLSSDGSGQIPYELIRDTLQI 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2180917	442	AT5G15610 "AT5G15610" [Arabido	0.934	0.737	0.693	5.1e-122
TAIR|locus:2076517	417	AT3G02200 "AT3G02200" [Arabido	0.934	0.781	0.696	1.7e-121
DICTYBASE|DDB_G0287005	401	DDB_G0287005 "proteasome compo	0.756	0.658	0.366	5.2e-42
UNIPROTKB|F1SGR0	374	EIF3M "Uncharacterized protein	0.776	0.724	0.248	2.3e-23
UNIPROTKB|E2QWG8	374	EIF3M "Uncharacterized protein	0.776	0.724	0.248	3.8e-23
UNIPROTKB|Q7L2H7	374	EIF3M "Eukaryotic translation	0.776	0.724	0.248	3.8e-23
UNIPROTKB|F1NZE2	375	EIF3M "Eukaryotic translation	0.776	0.722	0.251	1e-22
UNIPROTKB|Q5ZJ64	374	EIF3M "Eukaryotic translation	0.776	0.724	0.251	1e-22
UNIPROTKB|F1N5F7	374	EIF3M "Eukaryotic translation	0.776	0.724	0.244	1.3e-22
MGI|MGI:1351744	374	Eif3m "eukaryotic translation	0.776	0.724	0.244	1.6e-22

TAIR|locus:2180917 AT5G15610 "AT5G15610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 226/326 (69%), Positives = 277/326 (84%)

Query:     1 MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
             MTT+VPTSEEDP LA+VRFTS+LAWADAGPE AE +V+RLC EA+ES++ G+W+DLA+LM
Sbjct:     1 MTTIVPTSEEDPYLAIVRFTSQLAWADAGPEVAEPEVSRLCKEAEESIINGKWLDLATLM 60

Query:    61 LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
             +TSADL+ +K+S+KDLEC +T+ICNLV    S +EV EM K I+ K+IQQPNDK ++RLK
Sbjct:    61 VTSADLVSAKISEKDLECTYTIICNLVKNANSPEEVLEMVKAIAAKVIQQPNDKASLRLK 120

Query:   121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
             ILFNLYNL+++P +RF VYMKAL LAVNGKVTE+I+PSFKKIDSFLKEWNIDIKD+R LF
Sbjct:   121 ILFNLYNLVDHPNARFQVYMKALELAVNGKVTEYIVPSFKKIDSFLKEWNIDIKDQRELF 180

Query:   181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
             L IA VL+E++S +K+S +F+T YLATFS ED   + EAKEEAVR +IEFVK+P +FQCD
Sbjct:   181 LAIAKVLRENKSFAKESLQFVTNYLATFSNEDTQVLSEAKEEAVRAVIEFVKAPSIFQCD 240

Query:   241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
             LLD PA+ QLE D   A VYQLLKIFLTQRLD Y+EFQ  NS  L++YGLV EDC+AKMR
Sbjct:   241 LLDHPAVAQLEKDPNNAPVYQLLKIFLTQRLDAYMEFQNANSGFLQTYGLVEEDCVAKMR 300

Query:   301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
             L+SLVDL S++SG+IPY  IK+TLQV
Sbjct:   301 LLSLVDLASDDSGKIPYASIKNTLQV 326

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2076517 AT3G02200 "AT3G02200" [Arabidopsis thaliana (taxid:3702)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 227/326 (69%), Positives = 279/326 (85%)

Query:     1 MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
             MTT+VPTSEE+P LAVVRFTS+LAWADAGPEAAE ++ RLC EA+ESMV  +W++L+SLM
Sbjct:     1 MTTIVPTSEENPFLAVVRFTSQLAWADAGPEAAEPEITRLCREAEESMVAEKWLELSSLM 60

Query:    61 LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
             +TSA+L+ SK+S+KDLEC +T+IC++V   +S ++V EM K I+ K+ QQP+DK ++RLK
Sbjct:    61 VTSAELVSSKISEKDLECTYTIICSIVKNAKSPEQVLEMVKAIASKVAQQPSDKASLRLK 120

Query:   121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
             ILFNLYNL+++PY+RF VYMKAL LAV+GKVTE+I+ SFKKID+FLKEWNIDIKD+R LF
Sbjct:   121 ILFNLYNLVDHPYARFQVYMKALTLAVDGKVTEYIVSSFKKIDNFLKEWNIDIKDQRELF 180

Query:   181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
             L IANVLKE++S   +S KFLTKYLATFS EDA  +DEAKEEAVR +IEFVK+  +FQCD
Sbjct:   181 LAIANVLKENKSLVNESLKFLTKYLATFSNEDAQVLDEAKEEAVRAVIEFVKASSIFQCD 240

Query:   241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
             LLD+PA+ QLE DAKYA VYQLLKIFLTQRL+ Y EFQ  NS  L+SYGL +EDC+ KMR
Sbjct:   241 LLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKMR 300

Query:   301 LMSLVDLGSNESGQIPYGLIKDTLQV 326
             L+SLVDL S+ESG+IPY  IKDTLQV
Sbjct:   301 LLSLVDLASDESGKIPYTSIKDTLQV 326

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

DICTYBASE|DDB_G0287005 DDB_G0287005 "proteasome component region PCI (PINT) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 102/278 (36%), Positives = 166/278 (59%)

Query:    56 LASLMLTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPND 113
             L+ ++    + +F   K SDKD+E  F VI  ++ K E+ DE++ +++ I   +   P +
Sbjct:    50 LSKIVSNETEFLFKECKDSDKDIEGFFNVILTILHKLENEDEINIVSQKIRDSLSAHPTE 109

Query:   114 KPAMRLKILFNLYNLLENPYS--RFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNI 171
                +++KIL NL+N  + P S  R+ ++   + LA +    E +      IDS+L++WN+
Sbjct:   110 NSQLKIKILTNLFNSFQ-PKSTQRYDIFFALVKLASDSNNLEFVKYQITDIDSWLEDWNV 168

Query:   172 DIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFV 231
              I+ KR L+  I+N+ KE +     S +FL KYL TF+ ED+    EA+E+AVR  IE +
Sbjct:   169 SIQQKRKLYKLISNIFKEKQRML--SHQFLVKYLQTFTKEDSQ---EAQEDAVRVCIESI 223

Query:   232 KSPDMFQCD-LLDMPAIGQLENDAKYAS--VYQLLKIFLTQRLDGYLEFQAGNSALLKSY 288
                +++Q D LLD+PA+  LE     A+   Y+L+KIF T++LD +L+FQ  N   L + 
Sbjct:   224 SLQELYQSDYLLDLPAVQYLEGSTVSANSLTYELMKIFATEQLDSFLQFQQKNPNFLSTI 283

Query:   289 GLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             GL ++DC+ K+RL+SL  L S +S ++PY LI   LQ+
Sbjct:   284 GLSNDDCLQKIRLLSLATLTSEQS-KVPYSLISKMLQI 320

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SGR0 EIF3M "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 71/286 (24%), Positives = 155/286 (54%)

Query:    44 AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
             ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct:    30 SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query:   104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
               K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct:    87 CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query:   162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
             +  ++ +WN++ + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct:   147 VRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query:   222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
             +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct:   203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query:   281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct:   259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|E2QWG8 EIF3M "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 71/286 (24%), Positives = 154/286 (53%)

Query:    44 AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
             ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct:    30 SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query:   104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
               K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct:    87 CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query:   162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
             +  ++ +WN+  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct:   147 VRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query:   222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
             +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct:   203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query:   281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct:   259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|Q7L2H7 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 71/286 (24%), Positives = 154/286 (53%)

Query:    44 AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
             ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct:    30 SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query:   104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
               K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct:    87 CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query:   162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
             +  ++ +WN+  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct:   147 VRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query:   222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
             +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct:   203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query:   281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct:   259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

GO:0003743 "translation initiation factor activity" evidence=IC

GO:0006413 "translational initiation" evidence=IC

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NZE2 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 72/286 (25%), Positives = 154/286 (53%)

Query:    44 AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
             ++E+   G  +DLA + +   D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct:    31 SEENSEGGLHVDLAQI-IEVCDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 87

Query:   104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
               K+++ +  ++P++RL++L NL++ ++ N   R+ VY   L +A +    ++I     +
Sbjct:    88 CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLLKVASSCGAIQYIPTELDQ 147

Query:   162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
             +  ++ +WN+    K  L   + +VL + + S   + K + + L +++ ++A    +A+ 
Sbjct:   148 VRKWISDWNLSTDKKHTLLRLLYDVLVDCKKSDTAA-KVMVELLGSYTEDNA---SQARV 203

Query:   222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
             +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct:   204 DAHRCIVRALKDPNTFLFDHLLALKPVKFLEGEL----IHDLLTIFVSAKLVSYVKFYQN 259

Query:   281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct:   260 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 304

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|Q5ZJ64 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 72/286 (25%), Positives = 154/286 (53%)

Query:    44 AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
             ++E+   G  +DLA + +   D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct:    30 SEENSEGGLHVDLAQI-IEVCDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query:   104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
               K+++ +  ++P++RL++L NL++ ++ N   R+ VY   L +A +    ++I     +
Sbjct:    87 CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLLKVASSCGAIQYIPTELDQ 146

Query:   162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
             +  ++ +WN+    K  L   + +VL + + S   + K + + L +++ ++A    +A+ 
Sbjct:   147 VRKWISDWNLSTDKKHTLLRLLYDVLVDCKKSDTAA-KVMVELLGSYTEDNA---SQARV 202

Query:   222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
             +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct:   203 DAHRCIVRALKDPNTFLFDHLLALKPVKFLEGEL----IHDLLTIFVSAKLVSYVKFYQN 258

Query:   281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct:   259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1N5F7 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 70/286 (24%), Positives = 153/286 (53%)

Query:    44 AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
             ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct:    30 SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query:   104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
               K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct:    87 CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query:   162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
             +  ++ +WN+  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct:   147 VRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query:   222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
             +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct:   203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query:   281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  L +
Sbjct:   259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELHI 303

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

MGI|MGI:1351744 Eif3m "eukaryotic translation initiation factor 3, subunit M" [Mus musculus (taxid:10090)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 70/286 (24%), Positives = 153/286 (53%)

Query:    44 AQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLI 103
             ++E+   G  +DLA + + + D+   K  DKD+E +   + +L+   E  D+   + + +
Sbjct:    30 SEENSEGGLHVDLAQI-IEACDVCL-KEDDKDVESVMNSVVSLLLILEP-DKQEALIESL 86

Query:   104 SGKIIQ-QPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKK 161
               K+++ +  ++P++RL++L NL++ ++ N   R+ VY   + +A +    ++I     +
Sbjct:    87 CEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQ 146

Query:   162 IDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKE 221
             +  ++ +W +  + K  L   +   L + + S   S K + + L +++ ++A    +A+ 
Sbjct:   147 VRKWISDWKLTTEKKHTLLRLLYEALVDCKKSDAAS-KVMVELLGSYTEDNA---SQARV 202

Query:   222 EAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG 280
             +A R I+  +K P+ F  D LL +  +  LE +     ++ LL IF++ +L  Y++F   
Sbjct:   203 DAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGEL----IHDLLTIFVSAKLASYVKFYQN 258

Query:   281 NSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326
             N   + S GL+HE  +AKMRL++ + +   E+ +I +  ++  LQ+
Sbjct:   259 NKDFIDSLGLLHEQNMAKMRLLTFMGMAV-ENKEISFDTMQQELQI 303

GO:0003674 "molecular_function" evidence=ND

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038039001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (410 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025658001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (437 aa)				•	•		•		0.689
	GSVIVG00033547001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (333 aa)				•	•		•		0.666
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•					0.455
	GSVIVG00018281001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (285 aa)				•	•		•		0.435
	GSVIVG00001176001	SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)				•					0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
KOG2753	378	consensus Uncharacterized conserved protein, conta	100.0
KOG2908	380	consensus 26S proteasome regulatory complex, subun	100.0
KOG3250	258	consensus COP9 signalosome, subunit CSN7 [Posttran	99.36
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	98.68
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	96.82
smart00753	88	PAM PCI/PINT associated module.	96.82
KOG2581	493	consensus 26S proteasome regulatory complex, subun	96.54
COG5187	412	RPN7 26S proteasome regulatory complex component,	92.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	91.46
KOG0687	393	consensus 26S proteasome regulatory complex, subun	90.86
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	89.45
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	81.49

>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]

Probab=100.00  E-value=1.2e-59  Score=437.68  Aligned_cols=320  Identities=38%  Similarity=0.641  Sum_probs=292.1

Q ss_pred             cCCCCchhHHHHHHHhHhhhhcCCCcccchhHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCChhhHHHHHHHHHH
Q 018867            6 PTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICN   85 (349)
Q Consensus         6 ~~~~e~~~~~~~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~~ke~E~~~n~li~   85 (349)
                      +||+|+|+.+.+++..+++|.++|+..++|+.+   .+..+    |.-++.+..+++.++.+++. |+|++|+++|+|++
T Consensus         1 ~~~~e~P~f~dis~~~Ql~elr~yl~~~eaeis---~e~~~----kgl~~~l~~ii~~c~v~~k~-~ekdle~vlnsi~s   72 (378)
T KOG2753|consen    1 PTSEEVPVFADISFEEQLAELRAYLKKLEAEIS---EEASE----KGLEEDLLMIIEACDVLAKI-PEKDLECVLNSIVS   72 (378)
T ss_pred             CCCccCceEEEecHHHHHHHHHHHHhhcCcccc---hhhhc----cCHHHHHHHHHHHhHHhhcC-CcchHHHHHHHHHH
Confidence            589999999999999999999999999999998   22222    43344444555556666654 89999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhhccCC-chhHHHHHHHHHHHHcCCCcchhhhhHHhHH
Q 018867           86 LVTKPESLDEVHEMTKLISGKIIQQPNDK-PAMRLKILFNLYNLLENP-YSRFFVYMKALNLAVNGKVTEHIIPSFKKID  163 (349)
Q Consensus        86 l~~~~~~~~~~~~lv~~l~~~v~~~~~~~-~~~rl~~L~~Lfn~l~~~-~~r~~v~~~il~la~~~~~~~~l~~~l~~~~  163 (349)
                      ++...+ +++..++++.+|++++.+|.+. |.+|+++|++|||.++.+ +.|+.||++++++|.+++.+..+.+.++.++
T Consensus        73 Li~~~~-~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~  151 (378)
T KOG2753|consen   73 LIKNAP-PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLD  151 (378)
T ss_pred             HHHhCC-HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHH
Confidence            999885 9999999999999999998765 889999999999999975 5999999999999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeec-CC
Q 018867          164 SFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LL  242 (349)
Q Consensus       164 ~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~-LL  242 (349)
                      +|+++|+++.+++|.+|++++++++.. +.-+++-+++..||+||+.+++   ++|++.|.+|++.|+.+|++|.|| |+
T Consensus       152 ~~lkew~~~vedqrel~r~v~~al~~~-k~~~~s~kvmt~lLgtyt~dna---s~AredA~rcV~~av~dP~~F~fD~Ll  227 (378)
T KOG2753|consen  152 DWLKEWNISVEDQRELLRAVHKALKDN-KSVDESSKVMTELLGTYTEDNA---SEAREDAMRCVVEAVKDPKIFLFDHLL  227 (378)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHhc-chhhhHHHHHHHHHHHhcccch---hHHHHHHHHHHHHHHcCCceeccchhc
Confidence            999999999999999999999999997 4478999999999999999885   689999999999999999999999 99


Q ss_pred             CChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHh
Q 018867          243 DMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKD  322 (349)
Q Consensus       243 ~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~  322 (349)
                      .+|+|++|+++    .+|+||.||.+|.+++|.+|.+.|++++.++|++++++.+||||||||+||+. +++|||.+|++
T Consensus       228 ~L~pV~qLE~d----~i~qLL~IF~s~~L~aYveF~~~N~~Fvqs~gl~~E~~~~KMRLLTlm~LA~e-s~eisy~~l~k  302 (378)
T KOG2753|consen  228 TLPPVKQLEGD----LIHQLLKIFVSGKLDAYVEFVAANSGFVQSQGLVHEQNMAKMRLLTLMSLAEE-SNEISYDTLAK  302 (378)
T ss_pred             cCchHHHhccc----hHHHHHHHHHhcchHHHHHHHHhChHHHHHhcccHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHH
Confidence            99999999987    49999999999999999999999999999999999999999999999999984 89999999999


Q ss_pred             hcCCCCchH--HHHHHhhcccee
Q 018867          323 TLQVYFLTF--LLLDLWYGLFVV  343 (349)
Q Consensus       323 ~l~i~~~ev--e~id~i~~~~~~  343 (349)
                      .|+|.+|||  |+||+|++++|-
T Consensus       303 ~LqI~edeVE~fVIdaI~aklV~  325 (378)
T KOG2753|consen  303 ELQINEDEVELFVIDAIRAKLVE  325 (378)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHH
Confidence            999999987  689999999873

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-50  Score=379.53  Aligned_cols=305  Identities=14%  Similarity=0.167  Sum_probs=263.5

Q ss_pred             ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHh-hHHhhccCChhhHHHHHHHHH-HHhcCCCChhHHHHHHHHHHHHhhc
Q 018867           32 AAEEQVNRLCLEAQESMVMGRWMDLASLMLTS-ADLMFSKVSDKDLECIFTVIC-NLVTKPESLDEVHEMTKLISGKIIQ  109 (349)
Q Consensus        32 ~a~~e~~~~~~~~e~l~~~klwhqLt~~ll~~-~~~~f~~~~~ke~E~~~n~li-~l~~~~~~~~~~~~lv~~l~~~v~~  109 (349)
                      .|.|++...|..+++||++|+|||||.+++.+ .+++|..  ...+..+|..|+ .+-.++ ||   +++|+ ++.++.+
T Consensus        14 ~a~~~l~~ew~~leeLy~eKLW~QLt~~l~~fvd~~~f~~--~~~~l~lY~NFvsefe~kI-Np---lslve-i~l~~~~   86 (380)
T KOG2908|consen   14 SANPSLAAEWDRLEELYEEKLWHQLTLALVDFVDDPPFQA--GDLLLQLYLNFVSEFETKI-NP---LSLVE-ILLVVSE   86 (380)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHhhcc-Ch---HHHHH-HHHHHHH
Confidence            35688999999999999999999999999998 7777875  346678888777 555578 88   78888 6666776


Q ss_pred             CCCCChhhHHHHHHHHHhhccC-CchhHHHHH--HHHHHHHcCCCcchhhhhHHhHHHHHhhc-CCCHHHHHHHHHHHHH
Q 018867          110 QPNDKPAMRLKILFNLYNLLEN-PYSRFFVYM--KALNLAVNGKVTEHIIPSFKKIDSFLKEW-NIDIKDKRALFLGIAN  185 (349)
Q Consensus       110 ~~~~~~~~rl~~L~~Lfn~l~~-~~~r~~v~~--~il~la~~~~~~~~l~~~l~~~~~~L~~w-~~~~~~~~~~y~~~a~  185 (349)
                      +. .+....+++|..+-+.+.. +.+...+|+  .+..+--..|++..++..|++.++.+++. ++++.+|.+||++.+.
T Consensus        87 ~~-~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq  165 (380)
T KOG2908|consen   87 QI-SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ  165 (380)
T ss_pred             Hh-ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence            64 4688899999999998875 333444444  23333337889999999999999999998 7777799999999999


Q ss_pred             HHHHhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeec-CCCChhhhhcccCCCchhHHHHHH
Q 018867          186 VLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLK  264 (349)
Q Consensus       186 ~l~~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~~~~~~l~~LL~  264 (349)
                      ||+. .|+++.||+.+|+||+|.+.++.+ .+|.++.|+.++.+||+|+++|||| ||.||++.+|+|| ++.||+++|.
T Consensus       166 Yyk~-~~d~a~yYr~~L~YL~~~d~~~l~-~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT-~~eWL~dll~  242 (380)
T KOG2908|consen  166 YYKK-IGDFASYYRHALLYLGCSDIDDLS-ESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGT-NREWLKDLLI  242 (380)
T ss_pred             HHHH-HHhHHHHHHHHHHHhccccccccC-HHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCC-cHHHHHHHHH
Confidence            9999 599999999999999999988866 5889999999999999999999999 9999999999997 7999999999


Q ss_pred             HHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhh-hcC--CCCcChHHHHhhcCCCCchHHH--------
Q 018867          265 IFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLG-SNE--SGQIPYGLIKDTLQVYFLTFLL--------  333 (349)
Q Consensus       265 if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La-~~~--~r~isy~~Ia~~l~i~~~eve~--------  333 (349)
                      +|+.||+..|++.+..+.+ ++.++-+++.+++||||||||+++ ++|  .|.+||++||++++||.+|||+        
T Consensus       243 Afn~Gdl~~f~~l~~~~~~-~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~LVMKAlsl  321 (380)
T KOG2908|consen  243 AFNSGDLKRFESLKGVWGK-QPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVELLVMKALSL  321 (380)
T ss_pred             HhccCCHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            9999999999999887765 555666799999999999999999 674  9999999999999999999986        


Q ss_pred             ------HHHhhccceeEEEEe
Q 018867          334 ------LDLWYGLFVVNVLQV  348 (349)
Q Consensus       334 ------id~i~~~~~~~~~~~  348 (349)
                            ||++-+.+-++|||-
T Consensus       322 gLikG~Idqv~~~v~~swvqP  342 (380)
T KOG2908|consen  322 GLIKGSIDQVEGVVYMSWVQP  342 (380)
T ss_pred             cceeeeecccccEEEEecccc
Confidence                  888888899999984

>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.36  E-value=8.3e-13  Score=117.60  Aligned_cols=112  Identities=20%  Similarity=0.268  Sum_probs=95.7

Q ss_pred             HHHHHHHHhcCCCeeeec-CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHH
Q 018867          223 AVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRL  301 (349)
Q Consensus       223 A~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirL  301 (349)
                      -..+|..|+.+|++|.|+ |+.+|+|.+|.++ .++..++||.+|++|++.||..-.    .-++++   ......|++-
T Consensus        26 l~~lIsqale~P~vf~F~ELl~l~nv~qlae~-~dsa~lrlL~lFa~Gt~~Dy~aea----~rlp~L---s~~q~~kLk~   97 (258)
T KOG3250|consen   26 LEELISQALEAPGVFVFGELLILPNVVQLAEP-IDSAYLRLLELFAYGTYRDYSAEA----LRLPKL---SLAQLNKLKH   97 (258)
T ss_pred             HHHHHHHHhcCCCeeeHHHHHhhhhHHHHccc-ccHHHHHHHHHHhcCchhhhhhhh----hcCCCC---CHHHHHhhhc
Confidence            457899999999999998 9999999999876 689999999999999999996532    234444   4568899999


Q ss_pred             HHHhhhhhcCCCCcChHHHHhhcCCCCc---hHHHHHHhhcccee
Q 018867          302 MSLVDLGSNESGQIPYGLIKDTLQVYFL---TFLLLDLWYGLFVV  343 (349)
Q Consensus       302 LtL~~La~~~~r~isy~~Ia~~l~i~~~---eve~id~i~~~~~~  343 (349)
                      ++.+++|+. .+.|||..+.+.+.+..-   |..+|+|||++++.
T Consensus        98 ltV~slas~-~k~lpy~~Ll~~l~~~nvrelEd~iieamya~Ilr  141 (258)
T KOG3250|consen   98 LTVVSLASF-EKCLPYLVLLRLLPSRNVRELEDLIIEAMYADILR  141 (258)
T ss_pred             ceehhhhhh-chhhhHHHHHhhccCCchhHHHHHHHHHHHHHHHH
Confidence            999999987 899999999999988753   56789999998764

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=98.68  E-value=4.4e-08  Score=78.36  Aligned_cols=85  Identities=25%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHhcCChhhHHHHHhhC-hhhhhhcCCC--hHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchH--
Q 018867          257 ASVYQLLKIFLTQRLDGYLEFQAGN-SALLKSYGLV--HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTF--  331 (349)
Q Consensus       257 ~~l~~LL~if~~G~l~~y~~~~~~~-~~~~~~~~l~--~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~ev--  331 (349)
                      +|+.+|+++|.+|++.+|.++.+.+ +.++.+.++.  .+.+.+|+|..+|..++.. -+.+++++||+.++++.+++  
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~-y~~i~~~~ia~~l~~~~~~vE~   79 (105)
T PF01399_consen    1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKP-YSSISISEIAKALQLSEEEVES   79 (105)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC--SEEEHHHHHHHHTCCHHHHHH
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHhccchHHHHH
Confidence            4899999999999999999999988 6666655543  4899999999999999974 78999999999999999986  


Q ss_pred             HHHHHhhccce
Q 018867          332 LLLDLWYGLFV  342 (349)
Q Consensus       332 e~id~i~~~~~  342 (349)
                      +++++|+.|.+
T Consensus        80 ~l~~~I~~~~i   90 (105)
T PF01399_consen   80 ILIDLISNGLI   90 (105)
T ss_dssp             HHHHHHHTTSS
T ss_pred             HHHHHHHCCCE
Confidence            47888888875

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=96.82  E-value=0.0017  Score=50.48  Aligned_cols=50  Identities=18%  Similarity=0.125  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchH--HHHHHhhccce
Q 018867          292 HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTF--LLLDLWYGLFV  342 (349)
Q Consensus       292 ~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~ev--e~id~i~~~~~  342 (349)
                      .+.+.+|+|..++.++++. .+.|+|++|++.++++.+++  +++++|+.|.+
T Consensus         3 ~~~l~~~~~~~~l~~l~~~-y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l   54 (88)
T smart00088        3 VERLQRKIRLTNLLQLSEP-YSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEI   54 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHH-hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCe
Confidence            4679999999999999975 78999999999999999875  57888888865

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>smart00753 PAM PCI/PINT associated module

Probab=96.82  E-value=0.0017  Score=50.48  Aligned_cols=50  Identities=18%  Similarity=0.125  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchH--HHHHHhhccce
Q 018867          292 HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTF--LLLDLWYGLFV  342 (349)
Q Consensus       292 ~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~ev--e~id~i~~~~~  342 (349)
                      .+.+.+|+|..++.++++. .+.|+|++|++.++++.+++  +++++|+.|.+
T Consensus         3 ~~~l~~~~~~~~l~~l~~~-y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l   54 (88)
T smart00753        3 VERLQRKIRLTNLLQLSEP-YSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEI   54 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHH-hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCe
Confidence            4679999999999999975 78999999999999999875  57888888865

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.68  Score=46.09  Aligned_cols=139  Identities=12%  Similarity=0.117  Sum_probs=89.5

Q ss_pred             ccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHH--HHHHHhcCCCeeeecCCCChhhh-hcccCCCchhHHHHHHHHh
Q 018867          191 RSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVR--TIIEFVKSPDMFQCDLLDMPAIG-QLENDAKYASVYQLLKIFL  267 (349)
Q Consensus       191 ~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~--li~~aL~~p~iy~f~LL~~p~v~-~L~~~~~~~~l~~LL~if~  267 (349)
                      +.+|..+-++++..+.--+...+.  . .++...+  +++.-|.||-- .-..+..|+++ +|      .+.|+|=++.-
T Consensus       260 qldYssA~~~~~qa~rkapq~~al--G-f~q~v~k~~ivv~ll~geiP-ers~F~Qp~~~ksL------~~Yf~Lt~AVr  329 (493)
T KOG2581|consen  260 QLDYSSALEYFLQALRKAPQHAAL--G-FRQQVNKLMIVVELLLGEIP-ERSVFRQPGMRKSL------RPYFKLTQAVR  329 (493)
T ss_pred             hcchhHHHHHHHHHHHhCcchhhh--h-HHHHHHHHHHHHHHHcCCCc-chhhhcCccHHHHH------HHHHHHHHHHH
Confidence            367788888877777765543221  1 2222323  34455555521 11234566663 55      37999999999


Q ss_pred             cCChhhHHHHHhhChhhhhhcC-------CChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCch-HHH--HHHh
Q 018867          268 TQRLDGYLEFQAGNSALLKSYG-------LVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLT-FLL--LDLW  337 (349)
Q Consensus       268 ~G~l~~y~~~~~~~~~~~~~~~-------l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~e-ve~--id~i  337 (349)
                      .||++.|..-..++...+..-|       |.+...+.=||.++   ++   =..||+.+||+.|++..+| +|.  =.||
T Consensus       330 ~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~IS---ls---YSRISl~DIA~kL~l~Seed~EyiVakAI  403 (493)
T KOG2581|consen  330 LGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKIS---LS---YSRISLQDIAKKLGLNSEEDAEYIVAKAI  403 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhee---ee---eeeccHHHHHHHhcCCCchhHHHHHHHHH
Confidence            9999999998888766444422       24555555566543   34   2349999999999998876 664  5789


Q ss_pred             hccceeEE
Q 018867          338 YGLFVVNV  345 (349)
Q Consensus       338 ~~~~~~~~  345 (349)
                      +-|++-.-
T Consensus       404 RDGvIea~  411 (493)
T KOG2581|consen  404 RDGVIEAK  411 (493)
T ss_pred             Hhccceee
Confidence            99987653

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.60  E-value=2.3  Score=40.85  Aligned_cols=188  Identities=15%  Similarity=0.163  Sum_probs=118.5

Q ss_pred             chhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCC
Q 018867          133 YSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGED  212 (349)
Q Consensus       133 ~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~  212 (349)
                      ..+..||+.++.++--.|+...+...++.++..++  .+.+=++|.=|.+-.-.++-+.+++.++-..+..-|+||+...
T Consensus       149 g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE--kGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~E  226 (412)
T COG5187         149 GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE--KGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSE  226 (412)
T ss_pred             ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccc
Confidence            45788999999999888998899999998888887  4555566666677666666655778899999999999998776


Q ss_pred             CCChhHHHHHHHHHHHHHhcCCCeeee-c-CCCChhhhhccc-CCCchhHHHHHHHHhcCChh-hHHHHH----hhC-hh
Q 018867          213 AHTMDEAKEEAVRTIIEFVKSPDMFQC-D-LLDMPAIGQLEN-DAKYASVYQLLKIFLTQRLD-GYLEFQ----AGN-SA  283 (349)
Q Consensus       213 ~~~~~e~~~~A~~li~~aL~~p~iy~f-~-LL~~p~v~~L~~-~~~~~~l~~LL~if~~G~l~-~y~~~~----~~~-~~  283 (349)
                      ..+-+.+...|.-+  .+++-+.. +. . +++.|-|-.+=+ ++.-+.+.+|...+-.-|+. .|....    +.- +.
T Consensus       227 l~sY~~~vrYa~~~--Gl~~leR~-diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d  303 (412)
T COG5187         227 LISYSRAVRYAIFC--GLLRLERR-DIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDD  303 (412)
T ss_pred             cccHHHHHHHHHHh--hhheeehh-hhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccch
Confidence            54333332222222  22333222 33 3 777886644333 33344566666655555555 332222    111 11


Q ss_pred             -hhhhcCCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCc
Q 018867          284 -LLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFL  329 (349)
Q Consensus       284 -~~~~~~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~  329 (349)
                       ++   |-..+...+-||.=.-+.+-.. -|.++.+-.|++.+++.+
T Consensus       304 ~fl---~rh~d~fvREMRrrvYaQlLES-Yr~lsl~sMA~tFgVSV~  346 (412)
T COG5187         304 VFL---GRHVDLFVREMRRRVYAQLLES-YRLLSLESMAQTFGVSVE  346 (412)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCccHH
Confidence             22   2235666677877777777732 567888888888888754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=91.46  E-value=13  Score=35.13  Aligned_cols=139  Identities=12%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHcC-CCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCC
Q 018867          136 FFVYMKALNLAVNG-KVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAH  214 (349)
Q Consensus       136 ~~v~~~il~la~~~-~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~  214 (349)
                      ..++..+.++.... ++.+.......+.-.+...-+ .+.....++..++..+-.. +++.++....-+....+...+..
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhccccc
Confidence            44455555555555 566666666666655665445 6677788888888888875 77777777766655444332222


Q ss_pred             ChhHHHHHHHHHHHHHhcCCCeee----ec-CC-CChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhh
Q 018867          215 TMDEAKEEAVRTIIEFVKSPDMFQ----CD-LL-DMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG  280 (349)
Q Consensus       215 ~~~e~~~~A~~li~~aL~~p~iy~----f~-LL-~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~  280 (349)
                       .-.+++.....++--|..++.-.    |+ .. ..|..   .+|.++.-+.+|+.+|..||.+.|..-...
T Consensus       192 -~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~  259 (282)
T PF14938_consen  192 -KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAE  259 (282)
T ss_dssp             -GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred             -chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence             23466666777766665544322    22 11 12322   335567889999999999999999765433

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=90.86  E-value=17  Score=35.53  Aligned_cols=204  Identities=15%  Similarity=0.119  Sum_probs=133.1

Q ss_pred             HHHHHHHHHhhccCCchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHH
Q 018867          118 RLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDS  197 (349)
Q Consensus       118 rl~~L~~Lfn~l~~~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~  197 (349)
                      .++.+...|..--.-..|..|+..++.++--.++.+.+...++.+++.++  .+.+=++|.=|++---.|.-+-++++++
T Consensus       123 a~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE--~GgDWeRrNRlKvY~Gly~msvR~Fk~A  200 (393)
T KOG0687|consen  123 ALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIE--EGGDWERRNRLKVYQGLYCMSVRNFKEA  200 (393)
T ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hCCChhhhhhHHHHHHHHHHHHHhHHHH
Confidence            34444444443222246888888899999888999999999999998887  3444445544555544454444678899


Q ss_pred             HHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeec-CCCChhhhh-cccCCCchhHHHHHHHHhcCChhhHH
Q 018867          198 FKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LLDMPAIGQ-LENDAKYASVYQLLKIFLTQRLDGYL  275 (349)
Q Consensus       198 y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~-LL~~p~v~~-L~~~~~~~~l~~LL~if~~G~l~~y~  275 (349)
                      -...+.-++||+.-...+-+....-++-++.-+|--|++  =. ++..|-|.. |.+   -+.+.+++..+-.-++++|-
T Consensus       201 a~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dl--ktKVi~~~Evl~vl~~---l~~~~q~l~SLY~C~Y~~Ff  275 (393)
T KOG0687|consen  201 ADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDL--KTKVIKCPEVLEVLHK---LPSVSQLLNSLYECDYSDFF  275 (393)
T ss_pred             HHHHHHHcccccceecccHHHHHHHHHHHhhheeccchH--HhhhcCcHHHHHHhhc---CchHHHHHHHHHhccHHHHH
Confidence            999999999998766543344444444444444433322  14 777787754 432   45788888888887887774


Q ss_pred             HHH-hhChhhhhh---cCCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCc
Q 018867          276 EFQ-AGNSALLKS---YGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFL  329 (349)
Q Consensus       276 ~~~-~~~~~~~~~---~~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~  329 (349)
                      .-. .-....++.   ++-.-....+-||.-+-..+-.. =|.++.+-.|++.||+.+
T Consensus       276 ~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLES-Yrsl~l~~MA~aFgVSVe  332 (393)
T KOG0687|consen  276 NDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLES-YRSLTLESMAKAFGVSVE  332 (393)
T ss_pred             HHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCchHH
Confidence            332 111111111   12225677889999999998843 679999999999999964

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=89.45  E-value=2.7  Score=37.45  Aligned_cols=167  Identities=14%  Similarity=0.160  Sum_probs=91.3

Q ss_pred             CcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCC--CCCChhHHHHHHHHHHH
Q 018867          151 VTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGE--DAHTMDEAKEEAVRTII  228 (349)
Q Consensus       151 ~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~--~~~~~~e~~~~A~~li~  228 (349)
                      ..+.+...+..+..=+.-.++..+....+|..++..+-.. ++..++-+.+.....+|+.-  ..+...+..=.+..+..
T Consensus        30 ~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~-~d~~qf~~c~~~L~~lY~~~~~~~~~~~~~ef~~y~lL~  108 (204)
T PF03399_consen   30 DYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIES-GDLEQFNQCLSQLKELYDDLRDLPPSPNEAEFIAYYLLY  108 (204)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT---TTHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Confidence            3445555555555545555777777888888888777664 44444444444434444331  11111333334555554


Q ss_pred             HHhcCCCeeee--cCCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHH--hhChhhhhhcCCChHHHHHHHHHHHH
Q 018867          229 EFVKSPDMFQC--DLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQ--AGNSALLKSYGLVHEDCIAKMRLMSL  304 (349)
Q Consensus       229 ~aL~~p~iy~f--~LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~--~~~~~~~~~~~l~~~~l~~KirLLtL  304 (349)
                      ....++ .=.|  .+..+|.  .+.+++.-.-..++..++..|++..|-...  ++.|.....+   -+....+||.-+|
T Consensus       109 ~l~~~~-~~~~~~~l~~l~~--~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l---~~~~~~~iR~~al  182 (204)
T PF03399_consen  109 LLCQNN-IPDFHMELELLPS--EILSSPYIQFALELCRALMEGNYVRFFRLYRSKSAPYLFACL---MERFFNRIRLRAL  182 (204)
T ss_dssp             TT-T----THHHHHHTTS-H--HHHTSHHHHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHH---HGGGHHHHHHHHH
T ss_pred             HHHccc-chHHHHHHHHCch--hhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHH---HHHHHHHHHHHHH
Confidence            333442 2233  2444442  233443345667888999999999998877  4445443332   3347789999999


Q ss_pred             hhhhhcCCCC-cChHHHHhhcC
Q 018867          305 VDLGSNESGQ-IPYGLIKDTLQ  325 (349)
Q Consensus       305 ~~La~~~~r~-isy~~Ia~~l~  325 (349)
                      -.++.. -+. +|-+.+++-|+
T Consensus       183 ~~i~~a-y~~~i~l~~l~~~L~  203 (204)
T PF03399_consen  183 QSISKA-YRSSIPLSFLAELLG  203 (204)
T ss_dssp             HHHHHH-S-T-EEHHHHHHHTT
T ss_pred             HHHHHH-cCCCCCHHHHHHHcC
Confidence            999954 444 99999888664

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=81.49  E-value=48  Score=31.19  Aligned_cols=217  Identities=14%  Similarity=0.048  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCChhhHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCCCChh
Q 018867           37 VNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPA  116 (349)
Q Consensus        37 ~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~~ke~E~~~n~li~l~~~~~~~~~~~~lv~~l~~~v~~~~~~~~~  116 (349)
                      ...-+.++-+++.+.....-..+.+..+..++.+....+....|.--+.+....+++..+..+...+++..... ..++.
T Consensus        54 A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~-~~d~e  132 (282)
T PF14938_consen   54 AAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ-LGDYE  132 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT-T--HH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-cCCHH
Confidence            33667777777765544444444445566666665545667777877777777777877777777777654332 13455


Q ss_pred             hHHHHHH---HHHhhccCCchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCC-HHHHHHHHHHHHHHHHHhcc
Q 018867          117 MRLKILF---NLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNID-IKDKRALFLGIANVLKESRS  192 (349)
Q Consensus       117 ~rl~~L~---~Lfn~l~~~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~-~~~~~~~y~~~a~~l~~~~~  192 (349)
                      ..+....   .+|..-+.+.....++..+..+..+.+.++.....++++-...-+-++. ...++.++.++.=++.  .|
T Consensus       133 ~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~--~~  210 (282)
T PF14938_consen  133 KAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA--MG  210 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH--cC
Confidence            5555544   3444433334567888888899889998887777777654432222332 3445555555554444  37


Q ss_pred             ChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeee-c-CCCChhhhhcccCCCchhHHHHHHH
Q 018867          193 SSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQC-D-LLDMPAIGQLENDAKYASVYQLLKI  265 (349)
Q Consensus       193 ~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f-~-LL~~p~v~~L~~~~~~~~l~~LL~i  265 (349)
                      |...+-+..-+|.+-.+. -.. ..|. . ...-++.|....+.=.| + +-..+.+..|     .+|...+|-.
T Consensus       211 D~v~A~~~~~~~~~~~~~-F~~-s~E~-~-~~~~l~~A~~~~D~e~f~~av~~~d~~~~l-----d~w~~~~l~~  276 (282)
T PF14938_consen  211 DYVAARKALERYCSQDPS-FAS-SREY-K-FLEDLLEAYEEGDVEAFTEAVAEYDSISRL-----DNWKTKMLLK  276 (282)
T ss_dssp             -HHHHHHHHHHHGTTSTT-STT-SHHH-H-HHHHHHHHHHTT-CCCHHHHCHHHTTSS--------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCC-CCC-cHHH-H-HHHHHHHHHHhCCHHHHHHHHHHHcccCcc-----HHHHHHHHHH
Confidence            776676666667654322 111 1332 3 44555567766555344 2 4444444444     3477766643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169

 Score = 68.4 bits (167), Expect = 5e-14
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 205 LATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLL 263
           +       +       E     IIE    P +F    +L +P + QLE     +    LL
Sbjct: 11  IDQLVKRAS---TCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGT-TDSVYLDLL 66

Query: 264 KIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDT 323
           ++F       Y         L         D I K++ ++++ L  + +  +PY  +   
Sbjct: 67  RLFAHGTWGDYKCNATRLPHL-------SPDQILKLKQLTVLTLAES-NKVLPYDTLMVE 118

Query: 324 LQV 326
           L V
Sbjct: 119 LDV 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 43/400 (10%), Positives = 113/400 (28%), Gaps = 122/400 (30%)

Query: 1   MTTVVPTSEEDPALAVVRFTSEL--AWADAGPEAAEEQVNRL--------CLEAQES--- 47
           + + + T +  P++    +  +    + D     A+  V+RL         L        
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 48  -----MV-MGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTK 101
                ++  G+   +A  +               ++C                ++  +  
Sbjct: 153 VLIDGVLGSGKTW-VALDVC----------LSYKVQCKMD------------FKIFWLN- 188

Query: 102 LISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFK- 160
                      + P   L++L  L   ++  ++    +   + L ++         S + 
Sbjct: 189 --LKNC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---------SIQA 232

Query: 161 KIDSFLKEWN------I--DIKDKRAL--F------------LGIANVL---KESRSSSK 195
           ++   LK         +  ++++ +A   F              + + L     +  S  
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 196 DSFKFLTK-----YLATFSGEDAHTMDEAKEEAVRTIIEFVKSP---DMFQCDLLDMPAI 247
                LT       L  +         +   E + T      +P    +    + D  A 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRP---QDLPREVLTT------NPRRLSIIAESIRDGLA- 342

Query: 248 GQLEN--DAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDC-IAKMRLMSL 304
              +N        +  +++  L   L+   E++     +     +      I  + L  +
Sbjct: 343 -TWDNWKHVNCDKLTTIIESSLNV-LEPA-EYR----KMFDRLSVFPPSAHIPTILLSLI 395

Query: 305 -VDLGSNESGQIPYGLIKDTL-------QVYFLTFLLLDL 336
             D+  ++   +   L K +L           +  + L+L
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	100.0
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	99.94
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	99.32
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	98.25
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	98.08
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	97.93
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	97.73
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	97.12
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	94.71
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	80.28

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-41  Score=335.48  Aligned_cols=315  Identities=13%  Similarity=0.143  Sum_probs=250.7

Q ss_pred             HHHHHhHhhhhcCCCcccchhHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccC-ChhhHHHHHHHHHHHh-cCCCCh
Q 018867           16 VVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKV-SDKDLECIFTVICNLV-TKPESL   93 (349)
Q Consensus        16 ~~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~-~~ke~E~~~n~li~l~-~~~~~~   93 (349)
                      |-.+++.+-.      +++|++++.|.+++++|++|+|||||.+|..    +|... .......+|+.||.-+ .++ ||
T Consensus         7 i~~~l~~~~~------~~~~~l~~~~~~le~~~~~kLWhqlt~~L~~----~~~~~~~~~~~~~ly~~fi~~f~~ki-n~   75 (393)
T 4b4t_O            7 IDTILSTLRM------EADPSLHPLFEQFEKFYEEKLWFQLSESLTK----FFDDAKSTPLRLRLYDNFVSKFYDKI-NQ   75 (393)
T ss_dssp             HHHHHHHHHC------SSCSSCCSSHHHHHHHHCCSSCCSCCCTTHH----HHCCCSSCCCCHHHHHHHHHHHHHHS-CS
T ss_pred             HHHHHHHHHh------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhChhcchHHHHHHHHHHHHHHHhc-CH
Confidence            4455555543      4678899999999999999999999988887    55432 2234478999998444 477 77


Q ss_pred             hHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhccC---C---------chhHHHH--HHHHHHHHcCCCcchhhhhH
Q 018867           94 DEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLEN---P---------YSRFFVY--MKALNLAVNGKVTEHIIPSF  159 (349)
Q Consensus        94 ~~~~~lv~~l~~~v~~~~~~~~~~rl~~L~~Lfn~l~~---~---------~~r~~v~--~~il~la~~~~~~~~l~~~l  159 (349)
                         +++++.++. +..+ ..++..++.+|..++..+..   .         ..++.+|  +.+..+--..|+++.++..+
T Consensus        76 ---L~lv~~~~~-~~~~-~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l  150 (393)
T 4b4t_O           76 ---LSVVKYLLA-SLKD-SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLL  150 (393)
T ss_dssp             ---HHHHHTTHH-HHHH-TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             ---HHHHHHHHH-HHhh-cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence               778875544 3344 35688899999998776521   1         1233444  34444445678999999999


Q ss_pred             HhHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeee
Q 018867          160 KKIDSFLKEW-NIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQ  238 (349)
Q Consensus       160 ~~~~~~L~~w-~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~  238 (349)
                      ++++..+++. ++++.+|.+||.+.+.|++. +++++.+|++.+.||+|++..+..+.++++..|+.+++.||.+|++|+
T Consensus       151 ~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~-~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~  229 (393)
T 4b4t_O          151 DDLEKTLDKKDSIPLRITNSFYSTNSQYFKF-KNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYN  229 (393)
T ss_dssp             HHHHHHHHHSCCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCS
T ss_pred             HHHHHhhhccCCccHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999998 67889999999999999998 599999999999999999875444457888999999999999999999


Q ss_pred             ec-CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhh-hcCCCCcC
Q 018867          239 CD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLG-SNESGQIP  316 (349)
Q Consensus       239 f~-LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La-~~~~r~is  316 (349)
                      || ||.+|.+++|++++++.|+++||++|+.||+.+|.++.+.|.+.++.++.+...+.+|||+++|++|+ +++.|.||
T Consensus       230 f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~  309 (393)
T 4b4t_O          230 FGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLS  309 (393)
T ss_dssp             THHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred             hHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCc
Confidence            98 99999999998877899999999999999999999987777665555666688999999999999999 45688999


Q ss_pred             hHHHHhhcCCCCchHH--H------------HHHhhccceeEEEE
Q 018867          317 YGLIKDTLQVYFLTFL--L------------LDLWYGLFVVNVLQ  347 (349)
Q Consensus       317 y~~Ia~~l~i~~~eve--~------------id~i~~~~~~~~~~  347 (349)
                      |++|+++|+|+.+|||  +            ||++.+.+.|+|||
T Consensus       310 f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~  354 (393)
T 4b4t_O          310 FEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQ  354 (393)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC----
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEecc
Confidence            9999999999999876  4            45555556678876

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}

Probab=99.94  E-value=9.9e-28  Score=209.59  Aligned_cols=113  Identities=24%  Similarity=0.384  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhcCCCeeeec-CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHH
Q 018867          221 EEAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKM  299 (349)
Q Consensus       221 ~~A~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~Ki  299 (349)
                      +.|++++++||.+|++|+|| ||.||+|++|+++ +|+|+++||++|++|++.+|.++.+++|+      ++ +.+.+||
T Consensus        24 ~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~-~~~~~~~LL~iF~~G~~~~y~~~~~~~p~------L~-~~~~~Kl   95 (169)
T 3chm_A           24 EALGPLIIEATSHPSLFAFSEILALPNVAQLEGT-TDSVYLDLLRLFAHGTWGDYKCNATRLPH------LS-PDQILKL   95 (169)
T ss_dssp             GGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTS-TTHHHHHHHHHHHHCCHHHHHHHGGGSCC------CC-HHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCC-ChhHHHHHHHHHhcCCHHHHHHhHHhCcc------hH-HHHHHHH
Confidence            46999999999999999998 9999999999886 69999999999999999999998766663      44 8899999


Q ss_pred             HHHHHhhhhhcCCCCcChHHHHhhcCCC-CchH--HHH-HHhhccce
Q 018867          300 RLMSLVDLGSNESGQIPYGLIKDTLQVY-FLTF--LLL-DLWYGLFV  342 (349)
Q Consensus       300 rLLtL~~La~~~~r~isy~~Ia~~l~i~-~~ev--e~i-d~i~~~~~  342 (349)
                      |+|||++||++ +|+|||++|+++|+|+ .+||  |+| +|||+|+|
T Consensus        96 rlLtL~sLa~~-~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI  141 (169)
T 3chm_A           96 KQLTVLTLAES-NKVLPYDTLMVELDVSNVRELEDFLINECMYAGIV  141 (169)
T ss_dssp             HHHHHHHHHHH-CSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSE
T ss_pred             HHHHHHHHHHh-CCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCe
Confidence            99999999977 8999999999999999 6665  679 99998875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=99.32  E-value=1.2e-09  Score=107.18  Aligned_cols=295  Identities=9%  Similarity=-0.014  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCChhhHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhcCCCCChhhH
Q 018867           40 LCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESL-DEVHEMTKLISGKIIQQPNDKPAMR  118 (349)
Q Consensus        40 ~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~~ke~E~~~n~li~l~~~~~~~-~~~~~lv~~l~~~v~~~~~~~~~~r  118 (349)
                      -..++-++|.+..-.+-+..++...-++|...+-.--+.+...++..+..+++. +....+|....+-..+  ..+--+|
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~r~flr   98 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ--EKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            355566666665555555566777888888777656677778888777776543 2222333322221111  1233333


Q ss_pred             --------------------HHHHHHHHhhccC---CchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHH
Q 018867          119 --------------------LKILFNLYNLLEN---PYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKD  175 (349)
Q Consensus       119 --------------------l~~L~~Lfn~l~~---~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~  175 (349)
                                          ++.+..+...+..   +..-..|++...++....++...++..+.......+....++..
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence                                2233333333322   23457788888888888899999999998888888766678888


Q ss_pred             HHHHHHHHHHHHH-HhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeec-CCCChhhhhcccC
Q 018867          176 KRALFLGIANVLK-ESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LLDMPAIGQLEND  253 (349)
Q Consensus       176 ~~~~y~~~a~~l~-~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~  253 (349)
                      ++.+.....-++- . .+++..++...+....+|+...   ..++...+.-+++.++.+.+.++++ ++.+|..... .+
T Consensus       179 ~a~i~~~~Gi~~l~~-~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~  253 (394)
T 3txn_A          179 QGALDLQSGILHAAD-ERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SG  253 (394)
T ss_dssp             HHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CS
T ss_pred             HHHHHHHhhHHHHHh-ccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CC
Confidence            8888777777777 5 4899999999998888887432   3567788888999999999899997 8888876555 34


Q ss_pred             CCchhHHHHHHHHhcCChhhHHHHHhhChhhhh-hc--CCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCch
Q 018867          254 AKYASVYQLLKIFLTQRLDGYLEFQAGNSALLK-SY--GLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLT  330 (349)
Q Consensus       254 ~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~-~~--~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~e  330 (349)
                      |+..|+.+|+.+|..|++.+|......+...+. +.  .-....+.++||..+|..+.. |-+.|+++.||+.+++++++
T Consensus       254 pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~-pYsrIsl~~iA~~l~ls~~e  332 (394)
T 3txn_A          254 RDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIE-PYSRVQVAHVAESIQLPMPQ  332 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCSEEEHHHHHHHHTCCHHH
T ss_pred             ccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhH-hhceeeHHHHHHHHCcCHHH
Confidence            578899999999999999999988877643221 10  111478999999999999985 46789999999999999998


Q ss_pred             HH--HHHHhhccce
Q 018867          331 FL--LLDLWYGLFV  342 (349)
Q Consensus       331 ve--~id~i~~~~~  342 (349)
                      +|  +...|..|.+
T Consensus       333 vE~~L~~lI~dg~I  346 (394)
T 3txn_A          333 VEKKLSQMILDKKF  346 (394)
T ss_dssp             HHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHCCCe
Confidence            75  5666666543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=0.00012  Score=69.77  Aligned_cols=293  Identities=9%  Similarity=0.013  Sum_probs=180.9

Q ss_pred             HHHHHcCCHHHHHHHHHHhhHHhhccCChhhHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHhhcCCCCC---------
Q 018867           45 QESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTK-PESLDEVHEMTKLISGKIIQQPNDK---------  114 (349)
Q Consensus        45 e~l~~~klwhqLt~~ll~~~~~~f~~~~~ke~E~~~n~li~l~~~-~~~~~~~~~lv~~l~~~v~~~~~~~---------  114 (349)
                      +-+...|.|.+....+ ...-.++.+.++...+.....++..+.. .++.+++..+.+.............         
T Consensus        63 ~~y~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  141 (434)
T 4b4t_Q           63 QLYVTMGAKDKLREFI-PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL  141 (434)
T ss_dssp             HHHHHHTCHHHHHHHH-HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHH-HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            3455678888876543 3344455554555555555555555543 4456666665553332222211111         


Q ss_pred             ---------hhhHHHHHHHHHhhccC---CchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHH
Q 018867          115 ---------PAMRLKILFNLYNLLEN---PYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLG  182 (349)
Q Consensus       115 ---------~~~rl~~L~~Lfn~l~~---~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~  182 (349)
                               ....+.++..+......   .+....++..+..+....|+++.....++.........+.+......+|..
T Consensus       142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  221 (434)
T 4b4t_Q          142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM  221 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence                     11122333333333222   345677888888888899999988888888777777777788888999999


Q ss_pred             HHHHHHHhccChHHHHHHHHHHhcccCCCCCC-ChhHHHHHHHHHHHHHhcCCCeeee-cCCCChhhhhcccCCCchhHH
Q 018867          183 IANVLKESRSSSKDSFKFLTKYLATFSGEDAH-TMDEAKEEAVRTIIEFVKSPDMFQC-DLLDMPAIGQLENDAKYASVY  260 (349)
Q Consensus       183 ~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~-~~~e~~~~A~~li~~aL~~p~iy~f-~LL~~p~v~~L~~~~~~~~l~  260 (349)
                      ...++.. .+++.+++++....+.+++..... ....+.....-.++.....+..-.. .++..+........++..++.
T Consensus       222 ~g~~~~~-~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (434)
T 4b4t_Q          222 SGILHCE-DKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMK  300 (434)
T ss_dssp             HHHHTTS-SSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHH
T ss_pred             HHHHHHH-HHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHH
Confidence            9998887 488999999988888877543221 1122333333344444444433222 222222222222233456889


Q ss_pred             HHHHHHhcCChhhHHHHHhhChhhhhhcC---CChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH--HHH
Q 018867          261 QLLKIFLTQRLDGYLEFQAGNSALLKSYG---LVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL--LLD  335 (349)
Q Consensus       261 ~LL~if~~G~l~~y~~~~~~~~~~~~~~~---l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve--~id  335 (349)
                      .|...|..+++..|......+...+....   -....+.+.++-..+..++. +-+.|+++.||+.++++.+++|  +.+
T Consensus       301 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~y~~i~l~~la~~l~~~~~~~E~~l~~  379 (434)
T 4b4t_Q          301 AVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE-PFECVEISHISKIIGLDTQQVEGKLSQ  379 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHS-SCSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHhCcCHHHHHHHHHH
Confidence            99999999999999988776654332211   11456778888888888885 3678999999999999999875  444


Q ss_pred             Hhhcc
Q 018867          336 LWYGL  340 (349)
Q Consensus       336 ~i~~~  340 (349)
                      .|..|
T Consensus       380 lI~~~  384 (434)
T 4b4t_Q          380 MILDK  384 (434)
T ss_dssp             HHHHT
T ss_pred             HHhCC
Confidence            44443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.25  E-value=1.9e-05  Score=78.06  Aligned_cols=208  Identities=12%  Similarity=0.083  Sum_probs=146.1

Q ss_pred             HHHHHHHHhhccCCchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHH
Q 018867          119 LKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSF  198 (349)
Q Consensus       119 l~~L~~Lfn~l~~~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y  198 (349)
                      ++++..+...-..+.....+++.++.++-..++...+...+..+......- .++..+.+ |+.+.-.+....+++..++
T Consensus       151 ~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-~d~~~~~~-lk~~~gl~~l~~r~f~~Aa  228 (429)
T 4b4t_R          151 EKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-GDWERRNR-YKTYYGIHCLAVRNFKEAA  228 (429)
T ss_dssp             HHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CCTHHHHH-HHHHHHHGGGGTSCHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-CCHHHHHH-HHHHHHHHHHHhChHHHHH
Confidence            445555554433456788899999999999999999999998888777642 23333333 3443333333347788888


Q ss_pred             HHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeee-c-CCCChhhhh-cccCCCchhHHHHHHHHhcCChhhHH
Q 018867          199 KFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQC-D-LLDMPAIGQ-LENDAKYASVYQLLKIFLTQRLDGYL  275 (349)
Q Consensus       199 ~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f-~-LL~~p~v~~-L~~~~~~~~l~~LL~if~~G~l~~y~  275 (349)
                      +..+.-+.+++..+   ...+...+..+++.++.+++.-++ . ++..|.+.. ++..|...++.+++..|-.+++..|.
T Consensus       229 ~~f~e~~~t~~~~e---~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~  305 (429)
T 4b4t_R          229 KLLVDSLATFTSIE---LTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYF  305 (429)
T ss_dssp             HHHHHHHHHSCCSC---HHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhccCCccc---hhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHH
Confidence            87776666665433   356778899999999988877666 4 888887754 45444556788899999999988874


Q ss_pred             H-HHhhChhhhh-h--cCCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH
Q 018867          276 E-FQAGNSALLK-S--YGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL  332 (349)
Q Consensus       276 ~-~~~~~~~~~~-~--~~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve  332 (349)
                      . +....+..+. +  +.-..+.+.+.||..++..++. +-+.|+++.+|+.++++.+++|
T Consensus       306 ~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~-~Ys~I~l~~mA~~l~~s~~~~E  365 (429)
T 4b4t_R          306 PYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLE-SYKTLSLKSMASAFGVSVAFLD  365 (429)
T ss_dssp             HHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHH-TCSEEEHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhH-HhceeeHHHHHHHhCcCHHHHH
Confidence            3 3332222111 1  1223688999999999999996 4789999999999999999764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.00016  Score=71.79  Aligned_cols=193  Identities=13%  Similarity=0.027  Sum_probs=133.6

Q ss_pred             chhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCC
Q 018867          133 YSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGED  212 (349)
Q Consensus       133 ~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~  212 (349)
                      .....+++..+.++...++.......+..+..-...-...+..+..||...+.++.. .++|.++|++......+++..+
T Consensus       174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~~~~~~  252 (445)
T 4b4t_P          174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH-KREYLEVAQYLQEIYQTDAIKS  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcccccC
Confidence            346788888999999999988888888776655555566778899999999999887 4888888888666655554322


Q ss_pred             CCChhHHHHHH-HHHHHHHhcCCCeeeec-CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCC
Q 018867          213 AHTMDEAKEEA-VRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGL  290 (349)
Q Consensus       213 ~~~~~e~~~~A-~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l  290 (349)
                      .   +.+...+ ..++...+.+|..-..+ ++..+....  ..++.+++.+|+++|..+++..|..+.+.+...+.+..+
T Consensus       253 d---~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~--~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~  327 (445)
T 4b4t_P          253 D---EAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN--NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL  327 (445)
T ss_dssp             C---HHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS--SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred             C---HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc--cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence            1   2233333 44455566777654444 555433321  112466899999999999999998887766554433221


Q ss_pred             -------C--hHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH
Q 018867          291 -------V--HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL  332 (349)
Q Consensus       291 -------~--~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve  332 (349)
                             .  -..+.+.++--.|..++. +-+.|+++.||+.++++.+++|
T Consensus       328 ~~~~~~~~~~~~~L~~~v~ehnl~~i~k-~Ys~I~l~~la~lL~l~~~evE  377 (445)
T 4b4t_P          328 AFGGEANKHHWEDLQKRVIEHNLRVISE-YYSRITLLRLNELLDLTESQTE  377 (445)
T ss_dssp             SCCCSCSSHHHHHHHHHHHHHHHHHHHH-HEEEEEHHHHHHHHTSCHHHHH
T ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHH-HhceeeHHHHHHHhCcCHHHHH
Confidence                   1  245666676666666664 3568999999999999999876

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=97.93  E-value=9.5e-05  Score=65.84  Aligned_cols=158  Identities=12%  Similarity=0.073  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeecCCCChhhhhcc
Q 018867          172 DIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLE  251 (349)
Q Consensus       172 ~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~LL~~p~v~~L~  251 (349)
                      +..++..|+--...++-. ++++.+++..+...+..++.+.   ....+..-.-++...|....+        |.-..++
T Consensus         9 ~~~q~v~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~~~~~~---~~~k~~IL~yLIp~~Ll~G~i--------P~~~ll~   76 (203)
T 3t5x_A            9 STAQRVTYKYYVGRKAMF-DSDFKQAEEYLSFAFEHCHRSS---QKNKRMILIYLLPVKMLLGHM--------PTVELLK   76 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTTCE--------ECHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHcCCC--------CCHHHhh
Confidence            445555555555555555 4789999998888777665432   244545555555555555444        3333333


Q ss_pred             cCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhhhc-----CCCCcChHHHHhhcCC
Q 018867          252 NDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSN-----ESGQIPYGLIKDTLQV  326 (349)
Q Consensus       252 ~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~-----~~r~isy~~Ia~~l~i  326 (349)
                      .- +.....+|.+++-.||+..|++..++|...+.+-|+-  .+.+|+|.+++-.+.++     +...||+++|+.++++
T Consensus        77 ~~-~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~--lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~  153 (203)
T 3t5x_A           77 KY-HLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIF--LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKF  153 (203)
T ss_dssp             HT-TCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCH--HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHH
T ss_pred             hC-chhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChH--HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence            21 2235778999999999999999999998877766653  57899999999888753     3568999999999964


Q ss_pred             ------CCchHH--HHHHhhccceeE
Q 018867          327 ------YFLTFL--LLDLWYGLFVVN  344 (349)
Q Consensus       327 ------~~~eve--~id~i~~~~~~~  344 (349)
                            +.+|||  +.++|+.|.+-.
T Consensus       154 ~~~~~~~~~evE~ila~lI~~G~Ikg  179 (203)
T 3t5x_A          154 MQVEDVDIDEVQCILANLIYMGHVKG  179 (203)
T ss_dssp             TTCTTCCHHHHHHHHHHHHHHTSSCE
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCceEE
Confidence                  566775  678888887744

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.006  Score=60.61  Aligned_cols=220  Identities=14%  Similarity=0.077  Sum_probs=139.6

Q ss_pred             hhhHHHHHHHHHhhccC--C-----c---hh---HHHHHHHHHHHHcCCCcchhhhhHHhHHHHHh--hc-CCCHHHHHH
Q 018867          115 PAMRLKILFNLYNLLEN--P-----Y---SR---FFVYMKALNLAVNGKVTEHIIPSFKKIDSFLK--EW-NIDIKDKRA  178 (349)
Q Consensus       115 ~~~rl~~L~~Lfn~l~~--~-----~---~r---~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~--~w-~~~~~~~~~  178 (349)
                      .+.+-+++...||.--+  +     .   .|   +.+...+.++.-+.|.++.+++.++.++.--.  .. ..+..++..
T Consensus       142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~  221 (455)
T 3t5v_B          142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE  221 (455)
T ss_dssp             HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence            44456888999996422  1     1   12   44444555666689999999999998776411  12 234556666


Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHhcc-cCCCCCC--ChhHHHHHHHHHHHHHhcCCCeeeecCCCChhhhhcccC--
Q 018867          179 LFLGIANVLKESRSSSKDSFKFLTKYLAT-FSGEDAH--TMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLEND--  253 (349)
Q Consensus       179 ~y~~~a~~l~~~~~~~~~~y~~~l~yL~~-~~~~~~~--~~~e~~~~A~~li~~aL~~p~iy~f~LL~~p~v~~L~~~--  253 (349)
                      |+--...++-. ++++.+++..+...+.. .+.+...  .....+..-.-++...|....+        |.-.-+++.  
T Consensus       222 Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~--------P~~~ll~k~~~  292 (455)
T 3t5v_B          222 YRYLLGRYYLL-NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM--------VKWGPLRPFLS  292 (455)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC--------BCHHHHGGGSC
T ss_pred             eeHHHHHHHHH-HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC--------CCHHHHcccch
Confidence            66666666655 48899999988886664 3322100  0122333333444444444322        333333321  


Q ss_pred             CCchh-HHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhhhc-------C--CCCcChHHHHhh
Q 018867          254 AKYAS-VYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSN-------E--SGQIPYGLIKDT  323 (349)
Q Consensus       254 ~~~~~-l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~-------~--~r~isy~~Ia~~  323 (349)
                      +.-.+ ..+|.+++-.||+..|++..++|...+-+-|+ --.+..|+|.+++-.+.++       +  ...||+++|+.+
T Consensus       293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi-ly~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~a  371 (455)
T 3t5v_B          293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL-LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERV  371 (455)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHH
Confidence            11223 66799999999999999999999886666554 1468899999977665532       1  358999999999


Q ss_pred             cC---------------------CCCchHH--HHHHhhccceeE
Q 018867          324 LQ---------------------VYFLTFL--LLDLWYGLFVVN  344 (349)
Q Consensus       324 l~---------------------i~~~eve--~id~i~~~~~~~  344 (349)
                      ++                     ++.+|+|  +..+|+.|++-.
T Consensus       372 L~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkG  415 (455)
T 3t5v_B          372 LQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRA  415 (455)
T ss_dssp             HHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCE
T ss_pred             HhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEE
Confidence            98                     4667776  678899888743

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.02  Score=57.61  Aligned_cols=197  Identities=9%  Similarity=-0.002  Sum_probs=121.2

Q ss_pred             hhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCC
Q 018867          134 SRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDA  213 (349)
Q Consensus       134 ~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~  213 (349)
                      .+..++.-++...-..+..+....-+.+.. +- +-..+..+..+|+.-....+-. +++|.++++++...+...+.+..
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP-~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLE-YP-HTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SC-TTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CC-cccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchh
Confidence            455566666666656666655555444331 11 1135667777777777777776 48899999998887775544332


Q ss_pred             CChhHHHHHHH-HHHHHHhcCCCeeeecCCCChhhh-hcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCC
Q 018867          214 HTMDEAKEEAV-RTIIEFVKSPDMFQCDLLDMPAIG-QLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLV  291 (349)
Q Consensus       214 ~~~~e~~~~A~-~li~~aL~~p~iy~f~LL~~p~v~-~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~  291 (349)
                      .  ..-+..+. -+++--|+...+=...++..|.++ +|      .+.++|.++|..||+..|.+...+|...+..-|.-
T Consensus       306 a--~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L------~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty  377 (523)
T 4b4t_S          306 S--LGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSL------LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY  377 (523)
T ss_dssp             C--SHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHH------HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT
T ss_pred             h--hhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHH------HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh
Confidence            2  22334444 334444443333222344444442 23      36889999999999999999999997766654432


Q ss_pred             hHHHHHHHHHHHHhhhh---hcCCCCcChHHHHhhcCCC-CchHH--HHHHhhcccee
Q 018867          292 HEDCIAKMRLMSLVDLG---SNESGQIPYGLIKDTLQVY-FLTFL--LLDLWYGLFVV  343 (349)
Q Consensus       292 ~~~l~~KirLLtL~~La---~~~~r~isy~~Ia~~l~i~-~~eve--~id~i~~~~~~  343 (349)
                        .+..|+|.-..=...   +..-..||+++|+..++++ ++|+|  +-.+|+.|.+-
T Consensus       378 --~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~  433 (523)
T 4b4t_S          378 --QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIE  433 (523)
T ss_dssp             --HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSC
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCce
Confidence              355555544332222   2224579999999999996 56676  56788888764

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=94.71  E-value=0.39  Score=42.97  Aligned_cols=174  Identities=11%  Similarity=0.036  Sum_probs=99.4

Q ss_pred             CCcchhhhhHHhHHHHHhhcCC-----CH---HHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCC-ChhHHH
Q 018867          150 KVTEHIIPSFKKIDSFLKEWNI-----DI---KDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAH-TMDEAK  220 (349)
Q Consensus       150 ~~~~~l~~~l~~~~~~L~~w~~-----~~---~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~-~~~e~~  220 (349)
                      ++++.+...+..++.-|...++     +.   ...|.+|..-+..--. .+|.++|=++.- -|.++-.+... ...+..
T Consensus        21 ~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~-~~D~~~F~~~~~-qLk~~Y~~~~~~s~~~~e   98 (229)
T 4b0z_A           21 KDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQ-TCDIESFARYAS-QVIPFYHDSLVPSSRMGL   98 (229)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH-HHHHHHSSCCCCCTTHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHH-HHHHHHHccCCCCccHHH
Confidence            4555565666655555544432     11   2346777776655554 366544433333 33333222221 112333


Q ss_pred             HHHHHHHHHHhcCCCeeeec--CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhh-hhhcCCChHHHHH
Q 018867          221 EEAVRTIIEFVKSPDMFQCD--LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSAL-LKSYGLVHEDCIA  297 (349)
Q Consensus       221 ~~A~~li~~aL~~p~iy~f~--LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~-~~~~~l~~~~l~~  297 (349)
                      =.+.++... |...++-.|.  |-.+|.=..+++++--...++|-+++..|++..|-...++.|.- ..-+   .+.+..
T Consensus        99 ~~~~~LL~l-L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~---~~~l~~  174 (229)
T 4b0z_A           99 VTGLNLLYL-LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYF---MKIVMS  174 (229)
T ss_dssp             HHHHHHHHH-HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHH---HHHHHH
T ss_pred             HHHHHHHHH-HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHH---HHHHHH
Confidence            455565554 3344454553  22222212233342224568899999999999998887776531 1222   466889


Q ss_pred             HHHHHHHhhhhhcCCCCcChHHHHhhcCCCCch
Q 018867          298 KMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLT  330 (349)
Q Consensus       298 KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~e  330 (349)
                      ++|.-++..++.. -..||.+++++-|+.+.++
T Consensus       175 ~vR~~~l~~i~ka-Y~~i~l~~~~~~L~f~s~~  206 (229)
T 4b0z_A          175 MVRNEIATCAEKV-YSEIPLSNATSLLYLENTK  206 (229)
T ss_dssp             HHHHHHHHHHHHH-CSEEEHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCHH
Confidence            9999998888854 4679999999999998654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=80.28  E-value=30  Score=30.39  Aligned_cols=176  Identities=11%  Similarity=-0.014  Sum_probs=92.2

Q ss_pred             ccCCCCchhHHHHHHHhHhhhhcC-----CCccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCC-hhh--
Q 018867            5 VPTSEEDPALAVVRFTSELAWADA-----GPEAA-EEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVS-DKD--   75 (349)
Q Consensus         5 ~~~~~e~~~~~~~~~~~~~~~~~~-----~~~~a-~~e~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~-~ke--   75 (349)
                      +|.+.-.|-......+++..+-..     +.... .+....+..+++.++..+.|.+....+...    ....+ ..+  
T Consensus        37 ~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~----l~~~~~~~~~~  112 (293)
T 3u3w_A           37 IESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE----LKKEEYHPEFQ  112 (293)
T ss_dssp             HHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCCCCHHHH
T ss_pred             HHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH----hccccCChHHH
Confidence            355666677777777777665221     12222 234555667788999999998877554442    22211 122  


Q ss_pred             -HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHcCCCc
Q 018867           76 -LECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKP--AMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVT  152 (349)
Q Consensus        76 -~E~~~n~li~l~~~~~~~~~~~~lv~~l~~~v~~~~~~~~--~~rl~~L~~Lfn~l~~~~~r~~v~~~il~la~~~~~~  152 (349)
                       +-..+..+.......++.+++....++... +.....+..  ...+..++.+|...                    |+.
T Consensus       113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~--------------------g~~  171 (293)
T 3u3w_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAEN--------------------GYL  171 (293)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHHHHHHHHHT--------------------TCH
T ss_pred             HHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHc--------------------CCH
Confidence             233344344444444466777665554443 211111111  11234444444443                    344


Q ss_pred             chhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhc
Q 018867          153 EHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLA  206 (349)
Q Consensus       153 ~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~  206 (349)
                      +.....++++-+..+..+........+|..++.+|... |+++++..+.-+.+.
T Consensus       172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            44444444443344444345666777778888888874 777776666555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00