Citrus Sinensis ID: 018881
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 349 | ||||||
| 225448769 | 480 | PREDICTED: ribulose-1,5 bisphosphate car | 0.957 | 0.695 | 0.621 | 1e-110 | |
| 297736447 | 487 | unnamed protein product [Vitis vinifera] | 0.957 | 0.685 | 0.609 | 1e-107 | |
| 449464220 | 499 | PREDICTED: ribulose-1,5 bisphosphate car | 0.962 | 0.673 | 0.519 | 1e-100 | |
| 255568191 | 456 | Ribulose-1,5 bisphosphate carboxylase/ox | 0.759 | 0.581 | 0.665 | 1e-100 | |
| 297820264 | 473 | SET domain-containing protein [Arabidops | 0.959 | 0.708 | 0.539 | 1e-98 | |
| 42565948 | 463 | SET domain-containing protein [Arabidops | 0.928 | 0.699 | 0.542 | 2e-95 | |
| 356534483 | 463 | PREDICTED: histone-lysine N-methyltransf | 0.819 | 0.617 | 0.568 | 8e-94 | |
| 357444999 | 451 | Ribulose-1,5 bisphosphate carboxylase/ox | 0.830 | 0.643 | 0.571 | 9e-90 | |
| 449520517 | 923 | PREDICTED: LOW QUALITY PROTEIN: sulfate | 0.661 | 0.250 | 0.646 | 5e-82 | |
| 7329638 | 486 | putative protein [Arabidopsis thaliana] | 0.928 | 0.666 | 0.439 | 5e-69 |
| >gi|225448769|ref|XP_002275729.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/341 (62%), Positives = 257/341 (75%), Gaps = 7/341 (2%)
Query: 1 MLVGARLTGAWCFRHRRPHCAKAKLTFSSSSESKVLHSIDDEYDGDFLPWLERKAGVEIL 60
ML+GAR C HR C + FSS + + H +D + D DFLPWLE+KAGVEI
Sbjct: 1 MLLGARFIDRCCL-HRPIVCLSRRFKFSSPAMPQDSHCVDKDCD-DFLPWLEQKAGVEIS 58
Query: 61 SVLSIGKSAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLHPKIKSLLGDEISNVAKLAI 120
SVLSIGKS YGRSLFAS+ ++TGDCILKVPY Q++PDN+ KI SLLGDE+ N+AKLAI
Sbjct: 59 SVLSIGKSTYGRSLFASKSIQTGDCILKVPYNVQISPDNVPSKINSLLGDEVGNIAKLAI 118
Query: 121 VILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPSSLFEETVTKKDQIESE 180
VI E KMG+DSEWAPYI+RLPQ EMH+TIFWS+ EL +I SS+++ET+ +K QI+ +
Sbjct: 119 VISVEWKMGQDSEWAPYINRLPQPGEMHSTIFWSEGELKMIQQSSVYQETINQKAQIQKD 178
Query: 181 FLA----LECFPE-VFDHIKLKDFMHAYALVESRAWRSTKGESLIPFADFLNHDGLSEAV 235
FLA L F E +F I LK+FMHA ALV SRAW STKG SLIPFADF+NHDG S++V
Sbjct: 179 FLAIKPVLHHFSENLFKDISLKEFMHACALVGSRAWGSTKGLSLIPFADFVNHDGFSDSV 238
Query: 236 VLHDEDKQLSEVIADRDYAPKEEVWITYGKFSNSTLLLDFGFSLPYNSHDEVQIQIKVPD 295
+L DEDKQLSEVIADR+YAP E+V I YGKF N+TLLLDFGF+LPYN +D+VQIQ+ +P
Sbjct: 239 LLGDEDKQLSEVIADRNYAPGEQVLIRYGKFPNATLLLDFGFTLPYNIYDQVQIQVNIPH 298
Query: 296 HDPLLEVKLEVLQSHCLPRARDVNGFKSSNDSFTIKLVAST 336
HD L +KLE+L HC P+ DVN F S +SFTIK V S
Sbjct: 299 HDLLRTLKLELLHRHCPPKIGDVNSFSSMGNSFTIKEVKSA 339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736447|emb|CBI25318.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449464220|ref|XP_004149827.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255568191|ref|XP_002525071.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] gi|223535652|gb|EEF37318.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|297820264|ref|XP_002878015.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323853|gb|EFH54274.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|42565948|ref|NP_191068.2| SET domain-containing protein [Arabidopsis thaliana] gi|56236044|gb|AAV84478.1| At3g55080 [Arabidopsis thaliana] gi|59958342|gb|AAX12881.1| At3g55080 [Arabidopsis thaliana] gi|332645816|gb|AEE79337.1| SET domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356534483|ref|XP_003535783.1| PREDICTED: histone-lysine N-methyltransferase setd3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357444999|ref|XP_003592777.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula] gi|355481825|gb|AES63028.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449520517|ref|XP_004167280.1| PREDICTED: LOW QUALITY PROTEIN: sulfate transporter 4.1, chloroplastic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|7329638|emb|CAB82703.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 349 | ||||||
| TAIR|locus:2097253 | 463 | AT3G55080 "AT3G55080" [Arabido | 0.928 | 0.699 | 0.542 | 2.5e-88 | |
| TAIR|locus:2077342 | 504 | AT3G07670 [Arabidopsis thalian | 0.676 | 0.468 | 0.303 | 3.3e-20 | |
| TAIR|locus:2014764 | 482 | LSMT-L "lysine methyltransfera | 0.610 | 0.441 | 0.280 | 2.7e-14 | |
| SGD|S000002665 | 494 | RKM4 "Ribosomal lysine methylt | 0.392 | 0.277 | 0.28 | 1.2e-12 | |
| UNIPROTKB|E2RBS6 | 588 | SETD3 "Histone-lysine N-methyl | 0.836 | 0.496 | 0.258 | 1.7e-12 | |
| TAIR|locus:2102549 | 531 | AT3G56570 "AT3G56570" [Arabido | 0.584 | 0.384 | 0.241 | 2.6e-12 | |
| UNIPROTKB|Q86TU7 | 594 | SETD3 "Histone-lysine N-methyl | 0.836 | 0.491 | 0.246 | 2.9e-12 | |
| UNIPROTKB|A9X1D0 | 595 | SETD3 "Histone-lysine N-methyl | 0.836 | 0.490 | 0.246 | 2.9e-12 | |
| UNIPROTKB|B1MTJ4 | 595 | SETD3 "Histone-lysine N-methyl | 0.836 | 0.490 | 0.246 | 2.9e-12 | |
| ASPGD|ASPL0000004144 | 484 | AN6568 [Emericella nidulans (t | 0.369 | 0.266 | 0.292 | 3.4e-12 |
| TAIR|locus:2097253 AT3G55080 "AT3G55080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 179/330 (54%), Positives = 235/330 (71%)
Query: 13 FRHRRPHCAKAKLTFSSSSESKVLHSIDDEYDGDFLPWLERKAGVEILSVLSIGKSAYGR 72
F+ RR + AK FS + + + D +FLPWLER AG +I + LSIGKS YGR
Sbjct: 13 FQQRRNVSSLAK-RFSLAGKLTLELQTQASLDNNFLPWLERIAGAKITNTLSIGKSTYGR 71
Query: 73 SLFASEKLRTGDCILKVPYAAQLTPDNLHPKIKSLLGDEISNVAKLAIVILFEQKMGKDS 132
SLFAS+ + GDC+LKVP+ AQ+TPD L I+ LL +E+ N+ LA V++ E+KMG+ S
Sbjct: 72 SLFASKVIYAGDCMLKVPFNAQITPDELPSDIRVLLSNEVGNIGMLAAVLIREKKMGQKS 131
Query: 133 EWAPYISRLPQLEEMHNTIFWSKDELDLICPSSLFEETVTKKDQIESEF-LALECF---- 187
W PYISRLPQ EMH++IFW +DEL +I S++ +ETV +K QIE +F + F
Sbjct: 132 RWVPYISRLPQPAEMHSSIFWGEDELSMIRCSAVHQETVKQKAQIEKDFSFVAQAFKQHC 191
Query: 188 PEVFDHIKLKDFMHAYALVESRAWRSTKGESLIPFADFLNHDGLSEAVVLHDEDKQLSEV 247
P V + L+DFM+AYALV SRAW ++K SLIPFADF+NHDGLS ++VL DED QLSEV
Sbjct: 192 PIVTERPDLEDFMYAYALVGSRAWENSKRISLIPFADFMNHDGLSASIVLRDEDNQLSEV 251
Query: 248 IADRDYAPKEEVWITYGKFSNSTLLLDFGFSLPYNSHDEVQIQIKVPDHDPLLEVKLEVL 307
ADR+Y+P +EV+I YG+FSN+TL+LDFGF+ PYN HDEVQIQ+ VP+ DPL +KL +L
Sbjct: 252 TADRNYSPGDEVFIKYGEFSNATLMLDFGFTFPYNIHDEVQIQMDVPNDDPLRNMKLGLL 311
Query: 308 QSHCLPRARDVNGFKSSNDSFTIKLVASTL 337
Q+H +D+N F SS D+FTIK V S +
Sbjct: 312 QTHHTRTVKDINIFHSSCDTFTIKEVKSAI 341
|
|
| TAIR|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| SGD|S000002665 RKM4 "Ribosomal lysine methyltransferase specific forRpl42ap and Rpl42bp" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RBS6 SETD3 "Histone-lysine N-methyltransferase setd3" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| TAIR|locus:2102549 AT3G56570 "AT3G56570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000004144 AN6568 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| fgenesh1_pm.C_scaffold_5001582 | annotation not avaliable (473 aa) | |||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 349 | |||
| KOG1338 | 466 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG1337 | 472 | consensus N-methyltransferase [General function pr | 99.97 | |
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.72 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 98.42 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 95.66 | |
| KOG2589 | 453 | consensus Histone tail methylase [Chromatin struct | 95.41 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 95.09 | |
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 92.43 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 90.84 | |
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 90.24 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 88.3 | |
| PF09273 | 128 | Rubis-subs-bind: Rubisco LSMT substrate-binding; I | 84.95 | |
| KOG1082 | 364 | consensus Histone H3 (Lys9) methyltransferase SUV3 | 82.42 |
| >KOG1338 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=289.63 Aligned_cols=292 Identities=33% Similarity=0.513 Sum_probs=239.9
Q ss_pred ccHhhHHHHHhhcCCceeccceEecc-----CCceeEEEEcCCCCCCCEEEEecccCccCCCCcc-----hHHHhhhccC
Q 018881 42 EYDGDFLPWLERKAGVEILSVLSIGK-----SAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLH-----PKIKSLLGDE 111 (349)
Q Consensus 42 ~~~~~l~~Wl~~~G~~~~~~~v~i~~-----~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~-----~~l~~~l~~~ 111 (349)
+....|+.|++..+..+.++++.+.+ ...|+|++|+++|++||.++.+|++++++..+.. ++..+++-++
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~Lne 86 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLLNE 86 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHhhc
Confidence 34788999999999777889888764 1248999999999999999999999999988742 2333433378
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCchHHHhhCCCCCCCCCccCCChhhhhhcCCCcHHHHHHHHHHHHHHHHHH-----hhc
Q 018881 112 ISNVAKLAIVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPSSLFEETVTKKDQIESEFLA-----LEC 186 (349)
Q Consensus 112 ~~~~~~Lal~Ll~E~~~g~~S~w~pYl~~LP~~~~~~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~y~~-----l~~ 186 (349)
.+.|..|++.|++|...+.+|+|+||++.+|++.++++|+||+++|++.|..+..+++..++.+.++++|.. .+.
T Consensus 87 ~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~~~ 166 (466)
T KOG1338|consen 87 VGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFKQH 166 (466)
T ss_pred CCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999877779999999999999999999999999999886666677788889999999988 267
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc----------------CCCCceeeeecccCCCCCC-CCeEEEEcCCCCeEEEEE
Q 018881 187 FPEVFDHIKLKDFMHAYALVESRAWR----------------STKGESLIPFADFLNHDGL-SEAVVLHDEDKQLSEVIA 249 (349)
Q Consensus 187 ~p~~~~~~t~e~f~wA~~~V~SRaf~----------------~~~~~~LvP~~Dm~NH~~~-~~~~~~~d~~~~~~~l~a 249 (349)
+|.+|..+++|+|..+++++.+.+|. +....+|+|.+||+||+.. .|+..+|+. +|+.|+|
T Consensus 167 ~p~vfs~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~--NcL~mva 244 (466)
T KOG1338|consen 167 CPIVFSRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYED--NCLEMVA 244 (466)
T ss_pred CcchhcccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccC--cceeeee
Confidence 89999899999999999999999998 1246799999999999986 788888875 6999999
Q ss_pred ccCCCCCCeeecccCCCChHHHHHhCCCCCCC---------CCCcEEEEeccCCCCCccHHHHHHHHHhCCCCCcccccc
Q 018881 250 DRDYAPKEEVWITYGKFSNSTLLLDFGFSLPY---------NSHDEVQIQIKVPDHDPLLEVKLEVLQSHCLPRARDVNG 320 (349)
Q Consensus 250 ~~~i~~GeEv~i~YG~~sN~~LL~~YGFv~~~---------Np~D~v~l~l~~~~~d~~~~~k~~~L~~~gl~~~~~~~~ 320 (349)
+|+|++||||+++||-++|. |++||.+.-. -=+|.+++-.+++.+++.+..|.-+++.++..+-.+.+-
T Consensus 245 ~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~nt~teld~~e 322 (466)
T KOG1338|consen 245 DRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHNTRTELDINE 322 (466)
T ss_pred cCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhccchhhhhhHH
Confidence 99999999999999999988 7777766432 114555566678888999999988888888877554433
Q ss_pred cccCCCchhHHHhhhHH
Q 018881 321 FKSSNDSFTIKLVASTL 337 (349)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (349)
+-..=+-||-++.+|..
T Consensus 323 ~~~syd~ftkkE~~p~~ 339 (466)
T KOG1338|consen 323 FHSSYDTFTKKEVKPAI 339 (466)
T ss_pred HHHhhhhhhhccccccc
Confidence 33444667776655544
|
|
| >KOG1337 consensus N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices | Back alignment and domain information |
|---|
| >KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 349 | ||||
| 2h21_A | 440 | Structure Of Rubisco Lsmt Bound To Adomet Length = | 2e-20 | ||
| 1mlv_A | 444 | Structure And Catalytic Mechanism Of A Set Domain P | 3e-20 | ||
| 3smt_A | 497 | Crystal Structure Of Human Set Domain-Containing Pr | 1e-11 | ||
| 3qxy_A | 449 | Human Setd6 In Complex With Rela Lys310 Length = 44 | 5e-10 |
| >pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440 | Back alignment and structure |
|
| >pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444 | Back alignment and structure |
| >pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497 | Back alignment and structure |
| >pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310 Length = 449 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 349 | |||
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 4e-51 | |
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 5e-50 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 2e-46 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 1e-04 |
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440 | Back alignment and structure |
|---|
Score = 175 bits (443), Expect = 4e-51
Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 22/305 (7%)
Query: 38 SIDDEYDGDFLPWLERKAGVEILSVLSIGKSAYGRSLFASEKLRTGDCILKVPYAAQLTP 97
S+ F WL+ + + + + G L A + + D IL+VP + P
Sbjct: 1 SLSPAVQ-TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINP 59
Query: 98 DNLHPKIKSLLGDEISNVAKLAIVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDE 157
D + + E+ + + ++ E + +DS W Y LPQ E +TI+WS++E
Sbjct: 60 DAVAASEIGRVCSELKPWLSVILFLIRE-RSREDSVWKHYFGILPQ--ETDSTIYWSEEE 116
Query: 158 LDLICPSSLFEETVTKKDQIESEFLAL------ECFPEVFDHIKLKDFMHAYALVESRAW 211
L + S L + TV+ K+ +++E L L D + L DF A+ ++ SRA+
Sbjct: 117 LQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAF 176
Query: 212 RSTKG--ESLIPFADFLNHDGLSEAVVLHDE---------DKQLSEVIADRDYAPKEEVW 260
+ ++P AD +NH E L + + E+V+
Sbjct: 177 SRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY 236
Query: 261 ITYG-KFSNSTLLLDFGFSLPYNSHDEVQIQIKVPDHDPLLEVKLEVLQSHCLPRARDVN 319
I Y SN+ L LD+GF P + + +++ + DP + KL+V +S+ + +
Sbjct: 237 IQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFD 296
Query: 320 GFKSS 324
F +
Sbjct: 297 IFYNR 301
|
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 | Back alignment and structure |
|---|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 349 | |||
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 100.0 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 100.0 | |
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 100.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.37 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.34 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 98.36 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 97.79 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 97.63 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 97.54 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 97.44 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 97.29 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 97.23 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 97.18 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 97.01 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 96.99 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 96.97 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 96.92 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 96.84 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 96.8 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 96.72 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 96.71 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 93.34 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 92.89 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 92.52 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 90.54 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 90.31 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 87.74 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 85.58 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 84.0 |
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=429.28 Aligned_cols=285 Identities=25% Similarity=0.406 Sum_probs=237.9
Q ss_pred ccHhhHHHHHhhcCCceecc-ceEeccCCceeEEEEcCCCCCCCEEEEecccCccCCCCcch-HHHhhhccCCCcHHHHH
Q 018881 42 EYDGDFLPWLERKAGVEILS-VLSIGKSAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLHP-KIKSLLGDEISNVAKLA 119 (349)
Q Consensus 42 ~~~~~l~~Wl~~~G~~~~~~-~v~i~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~-~l~~~l~~~~~~~~~La 119 (349)
+..++|++|++++|+. +++ .+.....+.||||+|+++|++||+|++||.+++||..++.. .+...+ .++++|..|+
T Consensus 4 ~~~~~f~~W~~~~G~~-~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~~~~~~~~-~~~~~~~~La 81 (440)
T 2h21_A 4 PAVQTFWKWLQEEGVI-TAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVC-SELKPWLSVI 81 (440)
T ss_dssp HHHHHHHHHHHHTTSS-CTTCSEEEEEETTEEEEEESSCBCTTEEEEEEEGGGCCSHHHHTTSTTHHHH-TTSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCC-cCCceeeeccCCCCCEEEEcccCCCCCEEEEeChhHhccHHHhcchhHHHHH-hccCcHHHHH
Confidence 5789999999999975 543 24443334699999999999999999999999999988652 344443 3567899999
Q ss_pred HHHHHHhhcCCCCCchHHHhhCCCCCCCCCccCCChhhhhhcCCCcHHHHHHHHHHHHHHHHHHh-----hcCCCCCC-C
Q 018881 120 IVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPSSLFEETVTKKDQIESEFLAL-----ECFPEVFD-H 193 (349)
Q Consensus 120 l~Ll~E~~~g~~S~w~pYl~~LP~~~~~~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~y~~l-----~~~p~~~~-~ 193 (349)
++|++|+ .|++|+|+||+++||+. +++|++|+++|++.|+||++...+.++++.++++|..+ ..+|+.|+ .
T Consensus 82 l~Ll~E~-~g~~S~w~pYl~~LP~~--~~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 158 (440)
T 2h21_A 82 LFLIRER-SREDSVWKHYFGILPQE--TDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDP 158 (440)
T ss_dssp HHHHHHH-HCTTCTTHHHHTTSCSC--CSCTTTCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTCCSC
T ss_pred HHHHHHh-cCCCCcHHHHHHhcCCC--CCCcccCCHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhChhhCCCC
Confidence 9999999 79999999999999995 67999999999999999999999988888899999884 35677775 4
Q ss_pred CCHHHHHHHHHHHHhcccc--CCCCceeeeecccCCCCCCCC---eEEEEcC------CCCeEEEEEccCCCCCCeeecc
Q 018881 194 IKLKDFMHAYALVESRAWR--STKGESLIPFADFLNHDGLSE---AVVLHDE------DKQLSEVIADRDYAPKEEVWIT 262 (349)
Q Consensus 194 ~t~e~f~wA~~~V~SRaf~--~~~~~~LvP~~Dm~NH~~~~~---~~~~~d~------~~~~~~l~a~~~i~~GeEv~i~ 262 (349)
+|+++|.||+++|+||+|. ..+..+|||++||+||++.++ +.+..+. ++++++|+|.++|++||||||+
T Consensus 159 ~t~~~f~wA~~~v~SRaf~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~s 238 (440)
T 2h21_A 159 VTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 238 (440)
T ss_dssp CCHHHHHHHHHHHHHHCBCCC---CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEEC
T ss_pred CCHHHHHHHHHHhcccceeccCCCceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEe
Confidence 8999999999999999997 456789999999999998765 3444332 2468999999999999999999
Q ss_pred cCCC-ChHHHHHhCCCCCCCCCCcEEEEeccCCCCCccHHHHHHHHHhCCCCCcccccccccCCCchhHH
Q 018881 263 YGKF-SNSTLLLDFGFSLPYNSHDEVQIQIKVPDHDPLLEVKLEVLQSHCLPRARDVNGFKSSNDSFTIK 331 (349)
Q Consensus 263 YG~~-sN~~LL~~YGFv~~~Np~D~v~l~l~~~~~d~~~~~k~~~L~~~gl~~~~~~~~~~~~~~~~~~~ 331 (349)
||++ +|++||++|||++++||+|.+.|.++++.+|++++.|+++|+++|+.....|.-...+..+..+.
T Consensus 239 YG~~~~N~~LL~~YGFv~~~n~~d~~~l~l~~~~~d~~~~~k~~~l~~~gl~~~~~f~i~~~~~~~~~ll 308 (440)
T 2h21_A 239 YDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLL 308 (440)
T ss_dssp SCTTCCHHHHHHHSSCCCSCGGGCEEEEEEECCTTSTTHHHHHHHHHTTTCCSEEEEEEETTSCCCTTHH
T ss_pred CCCCCCHHHHHHhCCCCcCCCCCCeEEEEeecCCccccHHHHHHHHHHcCCCCCceEEeecCCCCCHHHH
Confidence 9998 99999999999999999999999999999999999999999999998776653333333444443
|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* | Back alignment and structure |
|---|
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 349 | ||||
| d2h2ja2 | 261 | b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain | 2e-37 |
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: RuBisCo LSMT catalytic domain domain: RuBisCo LSMT catalytic domain species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 132 bits (333), Expect = 2e-37
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 21/256 (8%)
Query: 46 DFLPWLERKAGVEILSVLSIGKSAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLHPKIK 105
F WL+ + + + + G L A + + D IL+VP + PD +
Sbjct: 7 TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEI 66
Query: 106 SLLGDEISNVAKLAIVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPSS 165
+ E+ + + ++ E + +DS W Y LP +E +TI+WS++EL + S
Sbjct: 67 GRVCSELKPWLSVILFLIRE-RSREDSVWKHYFGILP--QETDSTIYWSEEELQELQGSQ 123
Query: 166 LFEETVTKKDQIESEFLAL------ECFPEVFDHIKLKDFMHAYALVESRAWR--STKGE 217
L + TV+ K+ +++E L L D + L DF A+ ++ SRA+ +
Sbjct: 124 LLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENL 183
Query: 218 SLIPFADFLNHDGLSEAVVLHDEDKQLS---------EVIADRDYAPKEEVWITYG-KFS 267
++P AD +NH E K + + + E+V+I Y S
Sbjct: 184 VVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKS 243
Query: 268 NSTLLLDFGFSLPYNS 283
N+ L LD+GF P +
Sbjct: 244 NAELALDYGFIEPNEN 259
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 349 | |||
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 100.0 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 98.33 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 97.66 | |
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 97.12 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 96.97 | |
| d2h2ja1 | 176 | RuBisCo LSMT C-terminal, substrate-binding domain | 94.76 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 92.93 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 86.26 |
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: RuBisCo LSMT catalytic domain domain: RuBisCo LSMT catalytic domain species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=100.00 E-value=7.3e-45 Score=333.53 Aligned_cols=237 Identities=28% Similarity=0.445 Sum_probs=196.0
Q ss_pred ccHhhHHHHHhhcCCceeccceEec--cCCceeEEEEcCCCCCCCEEEEecccCccCCCCcch-HHHhhhccCCCcHHHH
Q 018881 42 EYDGDFLPWLERKAGVEILSVLSIG--KSAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLHP-KIKSLLGDEISNVAKL 118 (349)
Q Consensus 42 ~~~~~l~~Wl~~~G~~~~~~~v~i~--~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~-~l~~~l~~~~~~~~~L 118 (349)
.+.+.|++|++++|+. . +.+.+. ..+.||||+|+++|++||+|++||..+++|..++.. .+...+ ....++..|
T Consensus 3 ~~~~~~~~W~~~~g~~-~-~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~~~~~~~-~~~~~~~~l 79 (261)
T d2h2ja2 3 PAVQTFWKWLQEEGVI-T-AKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVC-SELKPWLSV 79 (261)
T ss_dssp HHHHHHHHHHHTTTSS-C-SSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTSGGGTTT-TTSCHHHHH
T ss_pred hHHHHHHHHHHHCCCc-c-CCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhhHHHHHH-hhcCcHHHH
Confidence 3678899999999975 4 445443 456799999999999999999999999999877542 222222 245678899
Q ss_pred HHHHHHHhhcCCCCCchHHHhhCCCCCCCCCccCCChhhhhhcCCCcHHHHHHHHHHHHHHHHHHh-----hcCCCCCC-
Q 018881 119 AIVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPSSLFEETVTKKDQIESEFLAL-----ECFPEVFD- 192 (349)
Q Consensus 119 al~Ll~E~~~g~~S~w~pYl~~LP~~~~~~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~y~~l-----~~~p~~~~- 192 (349)
++++++|+ .+..|.|++|++.||+. ..+|++|+.++++.|+++.+...+...++.++++|..+ ...++.+.
T Consensus 80 ~~~l~~e~-~~~~s~~~~y~~~lp~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
T d2h2ja2 80 ILFLIRER-SREDSVWKHYFGILPQE--TDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPD 156 (261)
T ss_dssp HHHHHHHH-HCTTCTTHHHHTTSCSC--CSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCS
T ss_pred HHHHHHHH-hCCCCchhhhhhccccc--cCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 99999998 59999999999999985 57899999999999999999999988888888888873 23343333
Q ss_pred CCCHHHHHHHHHHHHhcccc--CCCCceeeeecccCCCCCCCCeEEEEcC---------CCCeEEEEEccCCCCCCeeec
Q 018881 193 HIKLKDFMHAYALVESRAWR--STKGESLIPFADFLNHDGLSEAVVLHDE---------DKQLSEVIADRDYAPKEEVWI 261 (349)
Q Consensus 193 ~~t~e~f~wA~~~V~SRaf~--~~~~~~LvP~~Dm~NH~~~~~~~~~~d~---------~~~~~~l~a~~~i~~GeEv~i 261 (349)
.++++.|.||+++|.||+|. .....+|+|++||+||++.+|+.+.++. +++.++|+|.|+|++||||||
T Consensus 157 ~~~~~~~~~a~~~v~sr~~~~~~~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~i 236 (261)
T d2h2ja2 157 PVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 236 (261)
T ss_dssp CCCHHHHHHHHHHHHHHSBCCC---CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEE
T ss_pred ccCHHHHHHHHHHhhcccccccccccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEEE
Confidence 48999999999999999998 4456799999999999999998765543 245799999999999999999
Q ss_pred ccCC-CChHHHHHhCCCCCCC-CCC
Q 018881 262 TYGK-FSNSTLLLDFGFSLPY-NSH 284 (349)
Q Consensus 262 ~YG~-~sN~~LL~~YGFv~~~-Np~ 284 (349)
+||+ ++|++||++||||+++ |||
T Consensus 237 sYG~~~~n~~ll~~yGFv~~~~n~~ 261 (261)
T d2h2ja2 237 QYDLNKSNAELALDYGFIEPNENRH 261 (261)
T ss_dssp CSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred ecCCCCCHHHHHHhCCCCCCCCCCC
Confidence 9995 7999999999999886 886
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| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
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| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
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| >d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
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| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|